Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306110 | XP_003616933.3 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306110 | sp|Q7Y175|PUX5_ARATH | 55.981 | 418 | 149 | 11 | 31 | 419 | 9 | 420 | 2.99e-128 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306110 | A0A396HVH4 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114540 | Msa0306110 | 0.807633 | 4.595023e-50 | -8.615850e-47 |
| Msa0223410 | Msa0306110 | 0.820205 | 7.756917e-53 | -8.615850e-47 |
| Msa0306110 | Msa0306300 | -0.803197 | 3.910748e-49 | -8.615850e-47 |
| Msa0306110 | Msa0414950 | 0.818359 | 2.043029e-52 | -8.615850e-47 |
| Msa0306110 | Msa0459770 | 0.826425 | 2.731558e-54 | -8.615850e-47 |
| Msa0306110 | Msa0739590 | 0.814571 | 1.439397e-51 | -8.615850e-47 |
| Msa0306110 | Msa0802470 | 0.825606 | 4.278150e-54 | -8.615850e-47 |
| Msa0306110 | Msa0860290 | 0.869713 | 2.519286e-66 | -8.615850e-47 |
| Msa0306110 | Msa0932780 | 0.829658 | 4.549954e-55 | -8.615850e-47 |
| Msa0306110 | Msa0977180 | 0.801603 | 8.330223e-49 | -8.615850e-47 |
| Msa0306110 | Msa1075220 | 0.820823 | 5.594282e-53 | -8.615850e-47 |
| Msa0306110 | Msa1116130 | 0.808915 | 2.449026e-50 | -8.615850e-47 |
| Msa0306110 | Msa1139000 | 0.805192 | 1.502899e-49 | -8.615850e-47 |
| Msa0306110 | Msa1364470 | 0.802463 | 5.543952e-49 | -8.615850e-47 |
| Msa0306110 | Msa1429360 | 0.800468 | 1.421057e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306110 | MtrunA17_Chr5g0439401 | 97.852 | 419 | 9 | 0 | 2 | 420 | 4 | 422 | 0.0 | 831 |
| Msa0306110 | MtrunA17_Chr2g0289211 | 64.120 | 301 | 96 | 7 | 126 | 419 | 7 | 302 | 3.58e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306110 | AT4G15410.1 | 55.981 | 418 | 149 | 11 | 31 | 419 | 9 | 420 | 3.04e-129 | 379 |
| Msa0306110 | AT4G04210.1 | 60.403 | 298 | 113 | 4 | 125 | 419 | 7 | 302 | 1.25e-110 | 327 |
| Msa0306110 | AT4G22150.1 | 59.386 | 293 | 108 | 5 | 132 | 419 | 15 | 301 | 2.63e-106 | 317 |
| Msa0306110 | AT3G21660.2 | 47.475 | 198 | 79 | 4 | 222 | 419 | 265 | 437 | 8.75e-49 | 172 |
| Msa0306110 | AT3G21660.2 | 33.333 | 186 | 89 | 6 | 105 | 290 | 62 | 212 | 6.43e-12 | 67.4 |
| Msa0306110 | AT3G21660.1 | 43.434 | 198 | 84 | 4 | 222 | 419 | 265 | 434 | 1.81e-40 | 149 |
| Msa0306110 | AT3G21660.1 | 33.333 | 186 | 89 | 6 | 105 | 290 | 62 | 212 | 6.26e-12 | 67.4 |
Find 128 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAATGGAAAACTAAAT+AGG | 0.198035 | 2_3:-64556266 | None:intergenic |
| ATCAGTTGGTTCAAGCTCTT+TGG | 0.246690 | 2_3:-64555681 | None:intergenic |
| CGTGGGGTTGGAAGAACTTT+AGG | 0.259691 | 2_3:+64555884 | Msa0306110:CDS |
| TTTGAATGGAAAACTAAATA+GGG | 0.295823 | 2_3:-64556265 | None:intergenic |
| TCCCAAACAACTTACTGATT+TGG | 0.297389 | 2_3:+64556171 | Msa0306110:CDS |
| CATAGTGATTTCAATTTGAA+TGG | 0.310575 | 2_3:-64556279 | None:intergenic |
| CTGTCAATGATGGTCCTTTA+CGG | 0.328650 | 2_3:+64554208 | Msa0306110:CDS |
| TTACACATGTGGTCACCTTT+TGG | 0.333647 | 2_3:+64554172 | Msa0306110:CDS |
| GAATCGCTTGATGAGGGTTT+CGG | 0.349947 | 2_3:-64551893 | None:intergenic |
| GTCCAAATCAGTAAGTTGTT+TGG | 0.365932 | 2_3:-64556173 | None:intergenic |
| GGAACCGCCAGATTGCTTTC+CGG | 0.374244 | 2_3:+64554111 | Msa0306110:CDS |
| AAAGAAAAGAGCTTCTTGTT+TGG | 0.382173 | 2_3:-64551957 | None:intergenic |
| TCAATCACCACCATGCAATC+AGG | 0.385554 | 2_3:+64556074 | Msa0306110:CDS |
| AAGTAGATCAATCAATGTTT+AGG | 0.391059 | 2_3:-64556308 | None:intergenic |
| TCAGTTGGTTCAAGCTCTTT+GGG | 0.394997 | 2_3:-64555680 | None:intergenic |
| TCCAAATCAGTAAGTTGTTT+GGG | 0.395118 | 2_3:-64556172 | None:intergenic |
| AGAGTAGCGGTGTCGTTTAG+AGG | 0.401868 | 2_3:-64552046 | None:intergenic |
| TTCACGAAAGCAATTCTGTA+TGG | 0.409401 | 2_3:-64556364 | None:intergenic |
| TGCCTCGCCGGAAAGCAATC+TGG | 0.411044 | 2_3:-64554118 | None:intergenic |
| TACCACCCCTGGTAGGATCT+TGG | 0.413499 | 2_3:-64554002 | None:intergenic |
| CTCCTGCTGAAAACTCTTCA+AGG | 0.416506 | 2_3:+64554073 | Msa0306110:CDS |
| GAATTTCACGGAATACTCAT+TGG | 0.417957 | 2_3:+64556335 | Msa0306110:three_prime_UTR |
| GTAGTAGGCAAAGTGGGATT+CGG | 0.455964 | 2_3:+64552221 | Msa0306110:CDS |
| CTGAAAACTCTTCAAGGTCT+AGG | 0.458449 | 2_3:+64554079 | Msa0306110:CDS |
| AGAAAAGCGGCTCTGGTAGT+AGG | 0.460070 | 2_3:+64552206 | Msa0306110:CDS |
| TACCAGCTTGCTCTATAGTC+TGG | 0.461193 | 2_3:-64556195 | None:intergenic |
| AGCAGATGGCACTGCCTCGC+CGG | 0.463954 | 2_3:-64554130 | None:intergenic |
| TGGTAATTTCTTGCCCCACC+AGG | 0.468820 | 2_3:-64556127 | None:intergenic |
| GCAGTATTGCGTGGCTTCAC+GGG | 0.469573 | 2_3:-64555857 | None:intergenic |
| TACCATCAGATAACCTTAGC+TGG | 0.471996 | 2_3:-64556033 | None:intergenic |
| AGCAGTATTGCGTGGCTTCA+CGG | 0.477508 | 2_3:-64555858 | None:intergenic |
| ACGTGAAGAAACAGAAAGAA+TGG | 0.478497 | 2_3:+64551859 | Msa0306110:CDS |
| AATTACCAACTGCAGACAAT+GGG | 0.481202 | 2_3:+64556142 | Msa0306110:CDS |
| ACTAAACCCATTGCTGGCGC+TGG | 0.481482 | 2_3:-64555980 | None:intergenic |
| GAATCATCGGGATGAAACTC+AGG | 0.481708 | 2_3:-64552109 | None:intergenic |
| CTTCGAGATCGAAGCTCATA+CGG | 0.482804 | 2_3:-64552172 | None:intergenic |
| CTTCGATCTCGAAGGTCGAT+TGG | 0.483202 | 2_3:+64552181 | Msa0306110:CDS |
| TGCTTGTCCAAGATCCTACC+AGG | 0.483934 | 2_3:+64553995 | Msa0306110:CDS |
| TCTACAACTAAACCCATTGC+TGG | 0.487368 | 2_3:-64555986 | None:intergenic |
| ACTGCTCCAGCGCCAGCAAT+GGG | 0.489106 | 2_3:+64555974 | Msa0306110:CDS |
| TTAGGTGACAGCAGTTCAAA+TGG | 0.492099 | 2_3:+64555902 | Msa0306110:CDS |
| ATTGGTAAGAAAAGCGGCTC+TGG | 0.495571 | 2_3:+64552199 | Msa0306110:CDS |
| TTGAATGGAAAACTAAATAG+GGG | 0.501687 | 2_3:-64556264 | None:intergenic |
| GGTTGAGACGGACAGAAGTT+CGG | 0.505855 | 2_3:-64555706 | None:intergenic |
| TGCGGTGGAATCGCTTGATG+AGG | 0.508482 | 2_3:-64551900 | None:intergenic |
| ACAGAAGTTCGGCGATCAGT+TGG | 0.512498 | 2_3:-64555695 | None:intergenic |
| TGTAACTGATTCTACTGGCT+GGG | 0.513304 | 2_3:-64554154 | None:intergenic |
| TACTGCTCCAGCGCCAGCAA+TGG | 0.515865 | 2_3:+64555973 | Msa0306110:CDS |
| AGCAGTAAGTGGGGAAGCAC+CGG | 0.520572 | 2_3:-64555957 | None:intergenic |
| GTGTAACTGATTCTACTGGC+TGG | 0.522415 | 2_3:-64554155 | None:intergenic |
| GCTGGCGCTGGAGCAGTAAG+TGG | 0.525015 | 2_3:-64555968 | None:intergenic |
| CCGTCTCAACCTCACAAGGC+GGG | 0.529508 | 2_3:+64555718 | Msa0306110:CDS |
| TGCGAAGGAGGAGAATCATC+GGG | 0.531443 | 2_3:-64552121 | None:intergenic |
| CGGTTCATCAGAATCAGAAT+CGG | 0.532241 | 2_3:-64552275 | None:intergenic |
| AAACTCAGGGGAAAGAGAAT+CGG | 0.532439 | 2_3:-64552095 | None:intergenic |
| TTCTGATTCTGATGAACCGC+AGG | 0.535431 | 2_3:+64552279 | Msa0306110:CDS |
| CACGCAATACTGCTTTCCGT+GGG | 0.535644 | 2_3:+64555867 | Msa0306110:CDS |
| AGAAAACCCATTCCTCCAAA+AGG | 0.536739 | 2_3:-64554187 | None:intergenic |
| TCTACTGGCTGGGGAGCAGA+TGG | 0.544488 | 2_3:-64554144 | None:intergenic |
| TTGCGAAGGAGGAGAATCAT+CGG | 0.546136 | 2_3:-64552122 | None:intergenic |
| TGTGACGGTGATTGCGAAGG+AGG | 0.549095 | 2_3:-64552133 | None:intergenic |
| GTTGTCTAAGAAAGATGAAA+CGG | 0.549818 | 2_3:-64552011 | None:intergenic |
| AATACTGCTTTCCGTGGGGT+TGG | 0.550672 | 2_3:+64555872 | Msa0306110:CDS |
| GCGGTGGAATCGCTTGATGA+GGG | 0.553705 | 2_3:-64551899 | None:intergenic |
| CGCCAGATTGCTTTCCGGCG+AGG | 0.554024 | 2_3:+64554116 | Msa0306110:CDS |
| CTTAGCTGGATTGAGGTCAC+TGG | 0.555623 | 2_3:-64556019 | None:intergenic |
| CAATCACCACCATGCAATCA+GGG | 0.555905 | 2_3:+64556075 | Msa0306110:CDS |
| CCCGCCTTGTGAGGTTGAGA+CGG | 0.558341 | 2_3:-64555718 | None:intergenic |
| GGACCTAGTCAAACTACTGC+CGG | 0.558354 | 2_3:+64555938 | Msa0306110:CDS |
| AGATAACCTTAGCTGGATTG+AGG | 0.560345 | 2_3:-64556026 | None:intergenic |
| GGATCTTCCGACCTCCGTAA+AGG | 0.566377 | 2_3:-64554222 | None:intergenic |
| ATCCACAGAATTACCACCCC+TGG | 0.567943 | 2_3:-64554013 | None:intergenic |
| CTGGCGCTGGAGCAGTAAGT+GGG | 0.569503 | 2_3:-64555967 | None:intergenic |
| ACATGTGTAACTGATTCTAC+TGG | 0.569920 | 2_3:-64554159 | None:intergenic |
| TGATGCATCAAGACCTGGTG+GGG | 0.572769 | 2_3:+64556114 | Msa0306110:CDS |
| AAGAGAATCGGAAGGTGAAA+CGG | 0.572938 | 2_3:-64552083 | None:intergenic |
| TGATGGTCCTTTACGGAGGT+CGG | 0.576642 | 2_3:+64554215 | Msa0306110:CDS |
| GAAAACCCATTGTCTGCAGT+TGG | 0.578693 | 2_3:-64556147 | None:intergenic |
| TTCATTGATGCATCAAGACC+TGG | 0.579125 | 2_3:+64556109 | Msa0306110:CDS |
| GAGTAGCGGTGTCGTTTAGA+GGG | 0.585153 | 2_3:-64552045 | None:intergenic |
| CCACGCAATACTGCTTTCCG+TGG | 0.590418 | 2_3:+64555866 | Msa0306110:CDS |
| CTGTCCGTCTCAACCTCACA+AGG | 0.592041 | 2_3:+64555714 | Msa0306110:CDS |
| GACTGTGACGGTGATTGCGA+AGG | 0.592144 | 2_3:-64552136 | None:intergenic |
| AAATTACCAACTGCAGACAA+TGG | 0.595134 | 2_3:+64556141 | Msa0306110:CDS |
| CTCGAATATCCCTGATTGCA+TGG | 0.595950 | 2_3:-64556084 | None:intergenic |
| GTTATCTGATGGTACACGAA+TGG | 0.596346 | 2_3:+64556042 | Msa0306110:CDS |
| AGCTCATACGGAGCACGTGA+CGG | 0.596713 | 2_3:-64552160 | None:intergenic |
| CAGTGACCTCAATCCAGCTA+AGG | 0.597831 | 2_3:+64556020 | Msa0306110:CDS |
| TACCAGGGGTGGTAATTCTG+TGG | 0.600555 | 2_3:+64554011 | Msa0306110:CDS |
| AAATCAGTAAGTTGTTTGGG+AGG | 0.610070 | 2_3:-64556169 | None:intergenic |
| TCAAATGGTGAAGCTGCTAG+TGG | 0.617236 | 2_3:+64555917 | Msa0306110:CDS |
| AATCATCGGGATGAAACTCA+GGG | 0.618053 | 2_3:-64552108 | None:intergenic |
| GAACCGCAGGAGTATTATGC+TGG | 0.618612 | 2_3:+64552292 | Msa0306110:CDS |
| GCTCTGGTAGTAGGCAAAGT+GGG | 0.620239 | 2_3:+64552215 | Msa0306110:CDS |
| GCACCGGCAGTAGTTTGACT+AGG | 0.626229 | 2_3:-64555941 | None:intergenic |
| GGTGTCGTTTAGAGGGATAG+TGG | 0.627335 | 2_3:-64552038 | None:intergenic |
| TTGATGCATCAAGACCTGGT+GGG | 0.628623 | 2_3:+64556113 | Msa0306110:CDS |
| GGCTCTGGTAGTAGGCAAAG+TGG | 0.629593 | 2_3:+64552214 | Msa0306110:CDS |
| GACCAGACTATAGAGCAAGC+TGG | 0.629775 | 2_3:+64556193 | Msa0306110:CDS |
| GCACGTGACGGCGACTGTGA+CGG | 0.630121 | 2_3:-64552148 | None:intergenic |
| ATCCAGCTAAGGTTATCTGA+TGG | 0.632636 | 2_3:+64556031 | Msa0306110:CDS |
| GTCCAAGATCCTACCAGGGG+TGG | 0.635356 | 2_3:+64554000 | Msa0306110:CDS |
| CTCGCCGGAAAGCAATCTGG+CGG | 0.637134 | 2_3:-64554115 | None:intergenic |
| TCCGTCTCAACCTCACAAGG+CGG | 0.638683 | 2_3:+64555717 | Msa0306110:CDS |
| CCGCAGGAGTATTATGCTGG+TGG | 0.640112 | 2_3:+64552295 | Msa0306110:CDS |
| ATTATGCTGGTGGTCAGAAG+AGG | 0.640404 | 2_3:+64552305 | Msa0306110:CDS |
| CTAAAGTTCTTCCAACCCCA+CGG | 0.643931 | 2_3:-64555883 | None:intergenic |
| AGGTCGATTGGTAAGAAAAG+CGG | 0.647196 | 2_3:+64552193 | Msa0306110:CDS |
| GAATGAGTTGATTAGTGCGG+TGG | 0.648943 | 2_3:-64551915 | None:intergenic |
| GTAACTGATTCTACTGGCTG+GGG | 0.650058 | 2_3:-64554153 | None:intergenic |
| ATTGATGCATCAAGACCTGG+TGG | 0.651831 | 2_3:+64556112 | Msa0306110:CDS |
| TGAATGGAAAACTAAATAGG+GGG | 0.653528 | 2_3:-64556263 | None:intergenic |
| ACAGAATTACCACCCCTGGT+AGG | 0.657209 | 2_3:-64554009 | None:intergenic |
| CGTATGAGCTTCGATCTCGA+AGG | 0.657519 | 2_3:+64552173 | Msa0306110:CDS |
| ACGCAATACTGCTTTCCGTG+GGG | 0.663360 | 2_3:+64555868 | Msa0306110:CDS |
| CCACGGAAAGCAGTATTGCG+TGG | 0.679106 | 2_3:-64555866 | None:intergenic |
| TGGCGCTGGAGCAGTAAGTG+GGG | 0.688489 | 2_3:-64555966 | None:intergenic |
| CCACCAGCATAATACTCCTG+CGG | 0.690867 | 2_3:-64552295 | None:intergenic |
| TCAATGATGGTCCTTTACGG+AGG | 0.691556 | 2_3:+64554211 | Msa0306110:CDS |
| GCTTGTCCAAGATCCTACCA+GGG | 0.692331 | 2_3:+64553996 | Msa0306110:CDS |
| AGTAGAATCAGTTACACATG+TGG | 0.699388 | 2_3:+64554161 | Msa0306110:CDS |
| GCAAAATGCAGAATTCCTTG+AGG | 0.705055 | 2_3:+64554245 | Msa0306110:CDS |
| CTTGTCCAAGATCCTACCAG+GGG | 0.706116 | 2_3:+64553997 | Msa0306110:CDS |
| TCAGGGGAAAGAGAATCGGA+AGG | 0.707018 | 2_3:-64552091 | None:intergenic |
| AAGGCGGGATGAAAACTACC+CGG | 0.710643 | 2_3:+64555733 | Msa0306110:CDS |
| GATGAATGAGTTGATTAGTG+CGG | 0.723819 | 2_3:-64551918 | None:intergenic |
| ATCATCGGGATGAAACTCAG+GGG | 0.744127 | 2_3:-64552107 | None:intergenic |
| GAATATCCCTGATTGCATGG+TGG | 0.750491 | 2_3:-64556081 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGCAAATAAATAAATTTTT+AGG | + | chr2_3:64552733-64552752 | Msa0306110:intron | 10.0% |
| !!! | TTTAAAAAAAAAAGAGATTT+TGG | + | chr2_3:64553087-64553106 | Msa0306110:intron | 10.0% |
| !!! | AAAATGATTTTTTTAACAAA+AGG | + | chr2_3:64553134-64553153 | Msa0306110:intron | 10.0% |
| !! | TTGTTAAAATTTACAAAATA+TGG | - | chr2_3:64554326-64554345 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAGGTAAATATT+TGG | - | chr2_3:64555085-64555104 | None:intergenic | 10.0% |
| !!! | TTTAAAGAATTTAAAATTCT+AGG | - | chr2_3:64555318-64555337 | None:intergenic | 10.0% |
| !! | TAATGATTAATTGTGATATT+AGG | + | chr2_3:64552411-64552430 | Msa0306110:intron | 15.0% |
| !!! | TTTTTACGTCAAAAAAATTT+AGG | + | chr2_3:64552476-64552495 | Msa0306110:intron | 15.0% |
| !! | AAAGTGATTTATTAAACAAA+TGG | + | chr2_3:64552616-64552635 | Msa0306110:intron | 15.0% |
| !!! | TTTTTTTGATAGTAAACAAA+GGG | - | chr2_3:64553012-64553031 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGATAGTAAACAA+AGG | - | chr2_3:64553013-64553032 | None:intergenic | 15.0% |
| !!! | TCTAGTAAAATAATGATTTT+TGG | + | chr2_3:64553182-64553201 | Msa0306110:intron | 15.0% |
| !! | CTAAATTTAATTGAAAATGA+AGG | - | chr2_3:64554987-64555006 | None:intergenic | 15.0% |
| !! | CTATATTTAATTGAAAATGA+AGG | - | chr2_3:64555557-64555576 | None:intergenic | 15.0% |
| !!! | TTACTTATCTATTTTCTTTT+TGG | + | chr2_3:64555817-64555836 | Msa0306110:intron | 15.0% |
| !! | GAAGAAAAATTATGTTTAAA+TGG | + | chr2_3:64556384-64556403 | Msa0306110:three_prime_UTR | 15.0% |
| !! | TTAATTGTGATATTAGGTTT+AGG | + | chr2_3:64552417-64552436 | Msa0306110:intron | 20.0% |
| !! | AAAAAAGAATATACTTAGAG+TGG | + | chr2_3:64552540-64552559 | Msa0306110:intron | 20.0% |
| !!! | GCTTTTATATAGAATTCATA+AGG | - | chr2_3:64552828-64552847 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTATAAGCCATCT+TGG | - | chr2_3:64553337-64553356 | None:intergenic | 20.0% |
| !!! | AAAGCTTTTTTATTTGATGT+AGG | + | chr2_3:64553587-64553606 | Msa0306110:intron | 20.0% |
| !! | ATAAGATGTTTATACAAACA+GGG | - | chr2_3:64553613-64553632 | None:intergenic | 20.0% |
| !! | AATAAGATGTTTATACAAAC+AGG | - | chr2_3:64553614-64553633 | None:intergenic | 20.0% |
| !! | AATAAGTCTTTCTAAGTTAA+GGG | - | chr2_3:64553854-64553873 | None:intergenic | 20.0% |
| !!! | TTTTATTTGATGTAATTGAC+AGG | + | chr2_3:64553915-64553934 | Msa0306110:intron | 20.0% |
| !! | ATTTATTGAAAACTATTGCT+TGG | + | chr2_3:64554362-64554381 | Msa0306110:intron | 20.0% |
| !! | ATAACATAAAATACAAGATG+TGG | - | chr2_3:64554548-64554567 | None:intergenic | 20.0% |
| !!! | TGGAGAATTTATTTTTACAA+AGG | + | chr2_3:64554771-64554790 | Msa0306110:intron | 20.0% |
| !!! | TATTTTTACAAAGGTTTTGT+TGG | + | chr2_3:64554780-64554799 | Msa0306110:intron | 20.0% |
| !!! | ATTTTTACAAAGGTTTTGTT+GGG | + | chr2_3:64554781-64554800 | Msa0306110:intron | 20.0% |
| !!! | TAAATATTTGGTTCAAAAGA+GGG | - | chr2_3:64555073-64555092 | None:intergenic | 20.0% |
| !! | TTTGAATGGAAAACTAAATA+GGG | - | chr2_3:64556268-64556287 | None:intergenic | 20.0% |
| !! | ATTTGAATGGAAAACTAAAT+AGG | - | chr2_3:64556269-64556288 | None:intergenic | 20.0% |
| !!! | ATCTACTTTTATGAATTTCA+CGG | + | chr2_3:64556323-64556342 | Msa0306110:three_prime_UTR | 20.0% |
| !! | GAAAAATTATGTTTAAATGG+AGG | + | chr2_3:64556387-64556406 | Msa0306110:three_prime_UTR | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+AGG | + | chr2_3:64552868-64552887 | Msa0306110:intron | 25.0% |
| ! | CTCTTAGAAACTATTTGAAT+TGG | + | chr2_3:64552891-64552910 | Msa0306110:intron | 25.0% |
| !!! | TAAGTTTTGTGAAACTGTTT+GGG | + | chr2_3:64553247-64553266 | Msa0306110:intron | 25.0% |
| !!! | TAAGCTCTTTTATTTGAAGT+AGG | + | chr2_3:64553416-64553435 | Msa0306110:intron | 25.0% |
| ! | GACATTTGTTTATTCAAACA+GGG | - | chr2_3:64553442-64553461 | None:intergenic | 25.0% |
| ! | AGACATTTGTTTATTCAAAC+AGG | - | chr2_3:64553443-64553462 | None:intergenic | 25.0% |
| ! | ATACAATACAAATATAGCCA+TGG | - | chr2_3:64553517-64553536 | None:intergenic | 25.0% |
| ! | ATTGTATCGTATACTTATTG+TGG | + | chr2_3:64553535-64553554 | Msa0306110:intron | 25.0% |
| ! | TTGTATCGTATACTTATTGT+GGG | + | chr2_3:64553536-64553555 | Msa0306110:intron | 25.0% |
| ! | AAAACAACTTATGAACATCA+TGG | + | chr2_3:64553750-64553769 | Msa0306110:intron | 25.0% |
| ! | AAACAACTTATGAACATCAT+GGG | + | chr2_3:64553751-64553770 | Msa0306110:intron | 25.0% |
| !! | AATATTTTGTGAGACTGTTT+GGG | - | chr2_3:64553794-64553813 | None:intergenic | 25.0% |
| !! | TAATATTTTGTGAGACTGTT+TGG | - | chr2_3:64553795-64553814 | None:intergenic | 25.0% |
| ! | CAATAAGTCTTTCTAAGTTA+AGG | - | chr2_3:64553855-64553874 | None:intergenic | 25.0% |
| ! | CTTAACTTAGAAAGACTTAT+TGG | + | chr2_3:64553853-64553872 | Msa0306110:intron | 25.0% |
| !! | AAGACTTATTGGTAACTTAT+TGG | + | chr2_3:64553864-64553883 | Msa0306110:intron | 25.0% |
| ! | ATAAAACTAAGTTCCAAGAT+GGG | - | chr2_3:64553901-64553920 | None:intergenic | 25.0% |
| ! | AATAAAACTAAGTTCCAAGA+TGG | - | chr2_3:64553902-64553921 | None:intergenic | 25.0% |
| !! | AAAACAAAAGGTACATTAAC+AGG | - | chr2_3:64553959-64553978 | None:intergenic | 25.0% |
| ! | TTATTCATGTCATCTTCTAA+TGG | + | chr2_3:64554410-64554429 | Msa0306110:intron | 25.0% |
| ! | TATTCATGTCATCTTCTAAT+GGG | + | chr2_3:64554411-64554430 | Msa0306110:intron | 25.0% |
| !! | GGAAAATTGTTATTGACAAA+TGG | + | chr2_3:64554821-64554840 | Msa0306110:intron | 25.0% |
| !! | AAATATTTGGTTCAAAAGAG+GGG | - | chr2_3:64555072-64555091 | None:intergenic | 25.0% |
| !! | GTAAATATTTGGTTCAAAAG+AGG | - | chr2_3:64555074-64555093 | None:intergenic | 25.0% |
| !!! | TAAGGGGAGAAATTTTAATT+AGG | - | chr2_3:64555096-64555115 | None:intergenic | 25.0% |
| !!! | CTTTTTGGCAATATATGTAT+AGG | + | chr2_3:64555832-64555851 | Msa0306110:intron | 25.0% |
| !! | TTTTTGGATAACAACTGAAT+TGG | - | chr2_3:64556224-64556243 | None:intergenic | 25.0% |
| ! | AGTTGTTATCCAAAAACAAT+AGG | + | chr2_3:64556228-64556247 | Msa0306110:CDS | 25.0% |
| ! | TTGAATGGAAAACTAAATAG+GGG | - | chr2_3:64556267-64556286 | None:intergenic | 25.0% |
| ! | CATAGTGATTTCAATTTGAA+TGG | - | chr2_3:64556282-64556301 | None:intergenic | 25.0% |
| ! | AAGTAGATCAATCAATGTTT+AGG | - | chr2_3:64556311-64556330 | None:intergenic | 25.0% |
| AAAGAAAAGAGCTTCTTGTT+TGG | - | chr2_3:64551960-64551979 | None:intergenic | 30.0% | |
| GTTGTCTAAGAAAGATGAAA+CGG | - | chr2_3:64552014-64552033 | None:intergenic | 30.0% | |
| TAAAATGTGTGTGATTGCTT+AGG | + | chr2_3:64552381-64552400 | Msa0306110:intron | 30.0% | |
| AGAATATACTTAGAGTGGTT+TGG | + | chr2_3:64552545-64552564 | Msa0306110:intron | 30.0% | |
| !! | ATAAGCTCTTTTGTTTGACT+TGG | + | chr2_3:64552666-64552685 | Msa0306110:intron | 30.0% |
| !! | TAAGCTCTTTTGTTTGACTT+GGG | + | chr2_3:64552667-64552686 | Msa0306110:intron | 30.0% |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr2_3:64552693-64552712 | None:intergenic | 30.0% | |
| TAGAATTCATAAGGTTGTCA+AGG | - | chr2_3:64552819-64552838 | None:intergenic | 30.0% | |
| ! | GAATTGGCTTATTTGAGTTT+AGG | + | chr2_3:64552907-64552926 | Msa0306110:intron | 30.0% |
| TTAACCTGAAAATGAAAAGC+TGG | - | chr2_3:64553115-64553134 | None:intergenic | 30.0% | |
| ! | CACAAAACTTACGTTTGTTT+TGG | - | chr2_3:64553238-64553257 | None:intergenic | 30.0% |
| !! | GTAAGTTTTGTGAAACTGTT+TGG | + | chr2_3:64553246-64553265 | Msa0306110:intron | 30.0% |
| ! | GCTTTTGATAAACTAAGACA+TGG | - | chr2_3:64553572-64553591 | None:intergenic | 30.0% |
| TATTTGCAGATTATAGCACA+AGG | + | chr2_3:64553630-64553649 | Msa0306110:intron | 30.0% | |
| ! | GTAACTTATTGGTTAGTTAG+AGG | + | chr2_3:64553875-64553894 | Msa0306110:intron | 30.0% |
| !!! | TTTTGTTTTCATTGTTGCAG+CGG | + | chr2_3:64553970-64553989 | Msa0306110:intron | 30.0% |
| !! | TGTGGATGATATTTTTGATC+AGG | + | chr2_3:64554029-64554048 | Msa0306110:CDS | 30.0% |
| !! | TATTTTTGATCAGGCTAAAC+AGG | + | chr2_3:64554038-64554057 | Msa0306110:CDS | 30.0% |
| TAACAAGTTAAGTTACCTCA+AGG | - | chr2_3:64554263-64554282 | None:intergenic | 30.0% | |
| ATCCACAAGTTGCAAATAAT+GGG | - | chr2_3:64554389-64554408 | None:intergenic | 30.0% | |
| ! | ACTTTCTGTTTCTCTTGAAT+CGG | + | chr2_3:64555007-64555026 | Msa0306110:intron | 30.0% |
| AGGAATGTAATGTAATGTTG+AGG | + | chr2_3:64555248-64555267 | Msa0306110:intron | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | + | chr2_3:64555266-64555285 | Msa0306110:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | + | chr2_3:64555267-64555286 | Msa0306110:intron | 30.0% | |
| ! | AGTTTCTGTTTCTCTTGAAT+CGG | + | chr2_3:64555577-64555596 | Msa0306110:intron | 30.0% |
| ATCTGATGACAATAAACAAG+AGG | - | chr2_3:64555763-64555782 | None:intergenic | 30.0% | |
| TCCAAATCAGTAAGTTGTTT+GGG | - | chr2_3:64556175-64556194 | None:intergenic | 30.0% | |
| TGAATGGAAAACTAAATAGG+GGG | - | chr2_3:64556266-64556285 | None:intergenic | 30.0% | |
| !!! | GAGGTATTTTTTTGCGTAAA+TGG | + | chr2_3:64556406-64556425 | Msa0306110:three_prime_UTR | 30.0% |
| !!! | GTATTTTTTTGCGTAAATGG+AGG | + | chr2_3:64556409-64556428 | Msa0306110:three_prime_UTR | 30.0% |
| ACGTGAAGAAACAGAAAGAA+TGG | + | chr2_3:64551859-64551878 | Msa0306110:CDS | 35.0% | |
| !! | GATGAATGAGTTGATTAGTG+CGG | - | chr2_3:64551921-64551940 | None:intergenic | 35.0% |
| ! | ATAGTTTCTAAGAGCCTGTT+TGG | - | chr2_3:64552885-64552904 | None:intergenic | 35.0% |
| ! | TGTGATAAGCTGTTTCCATA+AGG | - | chr2_3:64553276-64553295 | None:intergenic | 35.0% |
| ACAGCTTATCACATGTTCAT+TGG | + | chr2_3:64553283-64553302 | Msa0306110:intron | 35.0% | |
| ! | TTTTCGTAAGTTGTCCAAGA+TGG | + | chr2_3:64553320-64553339 | Msa0306110:intron | 35.0% |
| AGCTTATACATAAGCGATCT+AGG | + | chr2_3:64553386-64553405 | Msa0306110:intron | 35.0% | |
| ATCCATAACATGACACACAT+CGG | + | chr2_3:64553491-64553510 | Msa0306110:intron | 35.0% | |
| GCTGCAACAATGAAAACAAA+AGG | - | chr2_3:64553971-64553990 | None:intergenic | 35.0% | |
| ! | ACATGTGTAACTGATTCTAC+TGG | - | chr2_3:64554162-64554181 | None:intergenic | 35.0% |
| AGTAGAATCAGTTACACATG+TGG | + | chr2_3:64554161-64554180 | Msa0306110:CDS | 35.0% | |
| !! | AATGGGTTTTCTGTCAATGA+TGG | + | chr2_3:64554198-64554217 | Msa0306110:CDS | 35.0% |
| ! | TCAAGGAATTCTGCATTTTG+CGG | - | chr2_3:64554246-64554265 | None:intergenic | 35.0% |
| TGTTTCCATGAGTTAAGACT+TGG | + | chr2_3:64554290-64554309 | Msa0306110:intron | 35.0% | |
| CATCCACAAGTTGCAAATAA+TGG | - | chr2_3:64554390-64554409 | None:intergenic | 35.0% | |
| ! | TGTCATCTTCTAATGGGTAT+TGG | + | chr2_3:64554417-64554436 | Msa0306110:intron | 35.0% |
| ! | GTCATCTTCTAATGGGTATT+GGG | + | chr2_3:64554418-64554437 | Msa0306110:intron | 35.0% |
| !! | TTCTAATGGGTATTGGGTTT+GGG | + | chr2_3:64554424-64554443 | Msa0306110:intron | 35.0% |
| TTCTATGAAGAGCTTTGCTT+TGG | + | chr2_3:64554932-64554951 | Msa0306110:intron | 35.0% | |
| ! | AGCTTTGCTTTGGATTTACA+AGG | + | chr2_3:64554942-64554961 | Msa0306110:intron | 35.0% |
| ! | GCTTTGCTTTGGATTTACAA+GGG | + | chr2_3:64554943-64554962 | Msa0306110:intron | 35.0% |
| ! | CTTTCTGTTTCTCTTGAATC+GGG | + | chr2_3:64555008-64555027 | Msa0306110:intron | 35.0% |
| TGAGGGAATGTAATGTTATG+AGG | + | chr2_3:64555186-64555205 | Msa0306110:intron | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | + | chr2_3:64555187-64555206 | Msa0306110:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr2_3:64555205-64555224 | Msa0306110:intron | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | + | chr2_3:64555222-64555241 | Msa0306110:intron | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | + | chr2_3:64555228-64555247 | Msa0306110:intron | 35.0% | |
| TACATTCCTCATCCAAACAA+TGG | - | chr2_3:64555237-64555256 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr2_3:64555205-64555224 | Msa0306110:intron | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | - | chr2_3:64555345-64555364 | None:intergenic | 35.0% | |
| TTCTATGAAGAGCTTTGCTT+TGG | + | chr2_3:64554932-64554951 | Msa0306110:intron | 35.0% | |
| TCTATGAAGAGCTTTGCTTT+GGG | + | chr2_3:64554933-64554952 | Msa0306110:intron | 35.0% | |
| ! | GTTTCTGTTTCTCTTGAATC+GGG | + | chr2_3:64555578-64555597 | Msa0306110:intron | 35.0% |
| ! | ACAATAAACAAGAGGCATAC+CGG | - | chr2_3:64555755-64555774 | None:intergenic | 35.0% |
| AAATTACCAACTGCAGACAA+TGG | + | chr2_3:64556141-64556160 | Msa0306110:CDS | 35.0% | |
| AATTACCAACTGCAGACAAT+GGG | + | chr2_3:64556142-64556161 | Msa0306110:CDS | 35.0% | |
| AAATCAGTAAGTTGTTTGGG+AGG | - | chr2_3:64556172-64556191 | None:intergenic | 35.0% | |
| ! | TCCCAAACAACTTACTGATT+TGG | + | chr2_3:64556171-64556190 | Msa0306110:CDS | 35.0% |
| GTCCAAATCAGTAAGTTGTT+TGG | - | chr2_3:64556176-64556195 | None:intergenic | 35.0% | |
| GAATTTCACGGAATACTCAT+TGG | + | chr2_3:64556335-64556354 | Msa0306110:three_prime_UTR | 35.0% | |
| TTCACGAAAGCAATTCTGTA+TGG | - | chr2_3:64556367-64556386 | None:intergenic | 35.0% | |
| AAGAGAATCGGAAGGTGAAA+CGG | - | chr2_3:64552086-64552105 | None:intergenic | 40.0% | |
| AAACTCAGGGGAAAGAGAAT+CGG | - | chr2_3:64552098-64552117 | None:intergenic | 40.0% | |
| AATCATCGGGATGAAACTCA+GGG | - | chr2_3:64552111-64552130 | None:intergenic | 40.0% | |
| AGGTCGATTGGTAAGAAAAG+CGG | + | chr2_3:64552193-64552212 | Msa0306110:CDS | 40.0% | |
| CGGTTCATCAGAATCAGAAT+CGG | - | chr2_3:64552278-64552297 | None:intergenic | 40.0% | |
| ! | GGAACCAGCTTTTCATTTTC+AGG | + | chr2_3:64553108-64553127 | Msa0306110:intron | 40.0% |
| AAATCAGCTTGTATCACTGG+TGG | - | chr2_3:64553468-64553487 | None:intergenic | 40.0% | |
| CTGAAAACTCTTCAAGGTCT+AGG | + | chr2_3:64554079-64554098 | Msa0306110:CDS | 40.0% | |
| ! | TCAAGGTCTAGGAGTTTTAC+TGG | + | chr2_3:64554090-64554109 | Msa0306110:CDS | 40.0% |
| ! | TGTAACTGATTCTACTGGCT+GGG | - | chr2_3:64554157-64554176 | None:intergenic | 40.0% |
| ! | TTACACATGTGGTCACCTTT+TGG | + | chr2_3:64554172-64554191 | Msa0306110:CDS | 40.0% |
| AGAAAACCCATTCCTCCAAA+AGG | - | chr2_3:64554190-64554209 | None:intergenic | 40.0% | |
| CTGTCAATGATGGTCCTTTA+CGG | + | chr2_3:64554208-64554227 | Msa0306110:CDS | 40.0% | |
| GCAAAATGCAGAATTCCTTG+AGG | + | chr2_3:64554245-64554264 | Msa0306110:CDS | 40.0% | |
| TTCCATGAGTTAAGACTTGG+TGG | + | chr2_3:64554293-64554312 | Msa0306110:intron | 40.0% | |
| AACCACCAAGTCTTAACTCA+TGG | - | chr2_3:64554298-64554317 | None:intergenic | 40.0% | |
| GTCCCATTATTTGCAACTTG+TGG | + | chr2_3:64554384-64554403 | Msa0306110:intron | 40.0% | |
| !! | CTTCTAATGGGTATTGGGTT+TGG | + | chr2_3:64554423-64554442 | Msa0306110:intron | 40.0% |
| ! | CTCTATTCAGACTAGTTGCT+GGG | - | chr2_3:64554454-64554473 | None:intergenic | 40.0% |
| ! | TCTCTATTCAGACTAGTTGC+TGG | - | chr2_3:64554455-64554474 | None:intergenic | 40.0% |
| TACAGCATAGCAAGGAGTTA+AGG | - | chr2_3:64554604-64554623 | None:intergenic | 40.0% | |
| AAACGCAATACAGCATAGCA+AGG | - | chr2_3:64554612-64554631 | None:intergenic | 40.0% | |
| ! | TGGGTTAGATGCATCAAGAT+CGG | + | chr2_3:64554800-64554819 | Msa0306110:intron | 40.0% |
| CAAATGGTTTGATCTGTCGA+AGG | + | chr2_3:64554837-64554856 | Msa0306110:intron | 40.0% | |
| ! | ATTTGGTTCAAAAGAGGGGA+GGG | - | chr2_3:64555068-64555087 | None:intergenic | 40.0% |
| ! | TATTTGGTTCAAAAGAGGGG+AGG | - | chr2_3:64555069-64555088 | None:intergenic | 40.0% |
| CTCTGTATAGTTCAACGGAT+GGG | - | chr2_3:64555133-64555152 | None:intergenic | 40.0% | |
| TCTCTGTATAGTTCAACGGA+TGG | - | chr2_3:64555134-64555153 | None:intergenic | 40.0% | |
| AGGGTCTCTGTATAGTTCAA+CGG | - | chr2_3:64555138-64555157 | None:intergenic | 40.0% | |
| TTACCTCATCCAAACACACT+CGG | + | chr2_3:64555347-64555366 | Msa0306110:intron | 40.0% | |
| !!! | CTTTGTTTGGGAGTTTTGAG+TGG | + | chr2_3:64555371-64555390 | Msa0306110:intron | 40.0% |
| TTTGGGAGGTGAGGAATATA+GGG | + | chr2_3:64555409-64555428 | Msa0306110:intron | 40.0% | |
| ! | AGCTTTGCTTTGGGTTTACA+AGG | + | chr2_3:64555512-64555531 | Msa0306110:intron | 40.0% |
| ! | GCTTTGCTTTGGGTTTACAA+GGG | + | chr2_3:64555513-64555532 | Msa0306110:intron | 40.0% |
| CTTCTTTATGCTCTGCATTG+AGG | - | chr2_3:64555651-64555670 | None:intergenic | 40.0% | |
| ! | TCAGTTGGTTCAAGCTCTTT+GGG | - | chr2_3:64555683-64555702 | None:intergenic | 40.0% |
| ! | ATCAGTTGGTTCAAGCTCTT+TGG | - | chr2_3:64555684-64555703 | None:intergenic | 40.0% |
| ! | CAATAAACAAGAGGCATACC+GGG | - | chr2_3:64555754-64555773 | None:intergenic | 40.0% |
| TTAGGTGACAGCAGTTCAAA+TGG | + | chr2_3:64555902-64555921 | Msa0306110:CDS | 40.0% | |
| TCTACAACTAAACCCATTGC+TGG | - | chr2_3:64555989-64556008 | None:intergenic | 40.0% | |
| AGATAACCTTAGCTGGATTG+AGG | - | chr2_3:64556029-64556048 | None:intergenic | 40.0% | |
| ATCCAGCTAAGGTTATCTGA+TGG | + | chr2_3:64556031-64556050 | Msa0306110:CDS | 40.0% | |
| TACCATCAGATAACCTTAGC+TGG | - | chr2_3:64556036-64556055 | None:intergenic | 40.0% | |
| GTTATCTGATGGTACACGAA+TGG | + | chr2_3:64556042-64556061 | Msa0306110:CDS | 40.0% | |
| TTCATTGATGCATCAAGACC+TGG | + | chr2_3:64556109-64556128 | Msa0306110:CDS | 40.0% | |
| AAAACTAAATAGGGGGAGAG+GGG | - | chr2_3:64556259-64556278 | None:intergenic | 40.0% | |
| GAAAACTAAATAGGGGGAGA+GGG | - | chr2_3:64556260-64556279 | None:intergenic | 40.0% | |
| GAATCGCTTGATGAGGGTTT+CGG | - | chr2_3:64551896-64551915 | None:intergenic | 45.0% | |
| !! | GAATGAGTTGATTAGTGCGG+TGG | - | chr2_3:64551918-64551937 | None:intergenic | 45.0% |
| !!! | GTCGTTTTGAGGAAGAGTAG+CGG | - | chr2_3:64552062-64552081 | None:intergenic | 45.0% |
| ATCATCGGGATGAAACTCAG+GGG | - | chr2_3:64552110-64552129 | None:intergenic | 45.0% | |
| GAATCATCGGGATGAAACTC+AGG | - | chr2_3:64552112-64552131 | None:intergenic | 45.0% | |
| TTGCGAAGGAGGAGAATCAT+CGG | - | chr2_3:64552125-64552144 | None:intergenic | 45.0% | |
| CTTCGAGATCGAAGCTCATA+CGG | - | chr2_3:64552175-64552194 | None:intergenic | 45.0% | |
| ATTGGTAAGAAAAGCGGCTC+TGG | + | chr2_3:64552199-64552218 | Msa0306110:CDS | 45.0% | |
| GTAGTAGGCAAAGTGGGATT+CGG | + | chr2_3:64552221-64552240 | Msa0306110:CDS | 45.0% | |
| TTCTGATTCTGATGAACCGC+AGG | + | chr2_3:64552279-64552298 | Msa0306110:CDS | 45.0% | |
| ATTATGCTGGTGGTCAGAAG+AGG | + | chr2_3:64552305-64552324 | Msa0306110:CDS | 45.0% | |
| !! | TTGTTTGACTTGGGCCTGTT+TGG | + | chr2_3:64552676-64552695 | Msa0306110:intron | 45.0% |
| ! | AAACTGTTTGGGACGCCTTA+TGG | + | chr2_3:64553258-64553277 | Msa0306110:intron | 45.0% |
| CGCAAATCAGCTTGTATCAC+TGG | - | chr2_3:64553471-64553490 | None:intergenic | 45.0% | |
| ! | CTTGAAGAGTTTTCAGCAGG+AGG | - | chr2_3:64554075-64554094 | None:intergenic | 45.0% |
| CTCCTGCTGAAAACTCTTCA+AGG | + | chr2_3:64554073-64554092 | Msa0306110:CDS | 45.0% | |
| ! | GACCTTGAAGAGTTTTCAGC+AGG | - | chr2_3:64554078-64554097 | None:intergenic | 45.0% |
| ! | GTAACTGATTCTACTGGCTG+GGG | - | chr2_3:64554156-64554175 | None:intergenic | 45.0% |
| ! | GTGTAACTGATTCTACTGGC+TGG | - | chr2_3:64554158-64554177 | None:intergenic | 45.0% |
| !! | TGGTCACCTTTTGGAGGAAT+GGG | + | chr2_3:64554181-64554200 | Msa0306110:CDS | 45.0% |
| TCAATGATGGTCCTTTACGG+AGG | + | chr2_3:64554211-64554230 | Msa0306110:CDS | 45.0% | |
| TATAGTTCAACGGATGGGAG+GGG | - | chr2_3:64555128-64555147 | None:intergenic | 45.0% | |
| GTATAGTTCAACGGATGGGA+GGG | - | chr2_3:64555129-64555148 | None:intergenic | 45.0% | |
| TGTATAGTTCAACGGATGGG+AGG | - | chr2_3:64555130-64555149 | None:intergenic | 45.0% | |
| AGAGACCCTTAGAGTGTGTT+TGG | + | chr2_3:64555149-64555168 | Msa0306110:intron | 45.0% | |
| ACCCTTAGAGTGTGTTTGGA+TGG | + | chr2_3:64555153-64555172 | Msa0306110:intron | 45.0% | |
| CCCATCCAAACACACTCTAA+GGG | - | chr2_3:64555157-64555176 | None:intergenic | 45.0% | |
| CCCTTAGAGTGTGTTTGGAT+GGG | + | chr2_3:64555154-64555173 | Msa0306110:intron | 45.0% | |
| CCTTAGAGTGTGTTTGGATG+GGG | + | chr2_3:64555155-64555174 | Msa0306110:intron | 45.0% | |
| CTTAGAGTGTGTTTGGATGG+GGG | + | chr2_3:64555156-64555175 | Msa0306110:intron | 45.0% | |
| ! | TTGGATGGGGGAATGTTTTG+AGG | + | chr2_3:64555168-64555187 | Msa0306110:intron | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | + | chr2_3:64555169-64555188 | Msa0306110:intron | 45.0% |
| TACCTCATCCAAACACACTC+GGG | + | chr2_3:64555348-64555367 | Msa0306110:intron | 45.0% | |
| AAACAAAGCCCGAGTGTGTT+TGG | - | chr2_3:64555359-64555378 | None:intergenic | 45.0% | |
| !! | AAACACACTCGGGCTTTGTT+TGG | + | chr2_3:64555358-64555377 | Msa0306110:intron | 45.0% |
| !! | AACACACTCGGGCTTTGTTT+GGG | + | chr2_3:64555359-64555378 | Msa0306110:intron | 45.0% |
| !!! | TGTTTGGGAGTTTTGAGTGG+AGG | + | chr2_3:64555374-64555393 | Msa0306110:intron | 45.0% |
| !!! | GTTTGGGAGTTTTGAGTGGA+GGG | + | chr2_3:64555375-64555394 | Msa0306110:intron | 45.0% |
| !!! | TTTGGGAGTTTTGAGTGGAG+GGG | + | chr2_3:64555376-64555395 | Msa0306110:intron | 45.0% |
| ! | CTTTGGGAGGTGAGGAATAT+AGG | + | chr2_3:64555408-64555427 | Msa0306110:intron | 45.0% |
| TTGGGAGGTGAGGAATATAG+GGG | + | chr2_3:64555410-64555429 | Msa0306110:intron | 45.0% | |
| CTAAAGTTCTTCCAACCCCA+CGG | - | chr2_3:64555886-64555905 | None:intergenic | 45.0% | |
| TCAAATGGTGAAGCTGCTAG+TGG | + | chr2_3:64555917-64555936 | Msa0306110:CDS | 45.0% | |
| TCAATCACCACCATGCAATC+AGG | + | chr2_3:64556074-64556093 | Msa0306110:CDS | 45.0% | |
| CAATCACCACCATGCAATCA+GGG | + | chr2_3:64556075-64556094 | Msa0306110:CDS | 45.0% | |
| GAATATCCCTGATTGCATGG+TGG | - | chr2_3:64556084-64556103 | None:intergenic | 45.0% | |
| CTCGAATATCCCTGATTGCA+TGG | - | chr2_3:64556087-64556106 | None:intergenic | 45.0% | |
| ATTGATGCATCAAGACCTGG+TGG | + | chr2_3:64556112-64556131 | Msa0306110:CDS | 45.0% | |
| TTGATGCATCAAGACCTGGT+GGG | + | chr2_3:64556113-64556132 | Msa0306110:CDS | 45.0% | |
| GAAAACCCATTGTCTGCAGT+TGG | - | chr2_3:64556150-64556169 | None:intergenic | 45.0% | |
| ! | TACCAGCTTGCTCTATAGTC+TGG | - | chr2_3:64556198-64556217 | None:intergenic | 45.0% |
| AAACTAAATAGGGGGAGAGG+GGG | - | chr2_3:64556258-64556277 | None:intergenic | 45.0% | |
| GGAAAACTAAATAGGGGGAG+AGG | - | chr2_3:64556261-64556280 | None:intergenic | 45.0% | |
| !!! | TAAATTATTTTATATATTTG+TGG | + | chr2_3:64554751-64554770 | Msa0306110:intron | 5.0% |
| !! | GGTGTCGTTTAGAGGGATAG+TGG | - | chr2_3:64552041-64552060 | None:intergenic | 50.0% |
| !! | GAGTAGCGGTGTCGTTTAGA+GGG | - | chr2_3:64552048-64552067 | None:intergenic | 50.0% |
| !! | AGAGTAGCGGTGTCGTTTAG+AGG | - | chr2_3:64552049-64552068 | None:intergenic | 50.0% |
| !!! | GGTGAAACGGTGTCGTTTTG+AGG | - | chr2_3:64552073-64552092 | None:intergenic | 50.0% |
| TCAGGGGAAAGAGAATCGGA+AGG | - | chr2_3:64552094-64552113 | None:intergenic | 50.0% | |
| TGCGAAGGAGGAGAATCATC+GGG | - | chr2_3:64552124-64552143 | None:intergenic | 50.0% | |
| CGTATGAGCTTCGATCTCGA+AGG | + | chr2_3:64552173-64552192 | Msa0306110:CDS | 50.0% | |
| CTTCGATCTCGAAGGTCGAT+TGG | + | chr2_3:64552181-64552200 | Msa0306110:CDS | 50.0% | |
| ! | AGAAAAGCGGCTCTGGTAGT+AGG | + | chr2_3:64552206-64552225 | Msa0306110:CDS | 50.0% |
| GCTCTGGTAGTAGGCAAAGT+GGG | + | chr2_3:64552215-64552234 | Msa0306110:CDS | 50.0% | |
| !! | GAACCGCAGGAGTATTATGC+TGG | + | chr2_3:64552292-64552311 | Msa0306110:CDS | 50.0% |
| CCACCAGCATAATACTCCTG+CGG | - | chr2_3:64552298-64552317 | None:intergenic | 50.0% | |
| ! | TGACTTGGGCCTGTTTGGAT+TGG | + | chr2_3:64552681-64552700 | Msa0306110:intron | 50.0% |
| GGCCGATGTGTGTCATGTTA+TGG | - | chr2_3:64553496-64553515 | None:intergenic | 50.0% | |
| AACATGACACACATCGGCCA+TGG | + | chr2_3:64553497-64553516 | Msa0306110:intron | 50.0% | |
| ! | GGTTAGTTAGAGGCCCATCT+TGG | + | chr2_3:64553885-64553904 | Msa0306110:intron | 50.0% |
| TGCTTGTCCAAGATCCTACC+AGG | + | chr2_3:64553995-64554014 | Msa0306110:CDS | 50.0% | |
| GCTTGTCCAAGATCCTACCA+GGG | + | chr2_3:64553996-64554015 | Msa0306110:CDS | 50.0% | |
| CTTGTCCAAGATCCTACCAG+GGG | + | chr2_3:64553997-64554016 | Msa0306110:CDS | 50.0% | |
| ACAGAATTACCACCCCTGGT+AGG | - | chr2_3:64554012-64554031 | None:intergenic | 50.0% | |
| TACCAGGGGTGGTAATTCTG+TGG | + | chr2_3:64554011-64554030 | Msa0306110:CDS | 50.0% | |
| ATCCACAGAATTACCACCCC+TGG | - | chr2_3:64554016-64554035 | None:intergenic | 50.0% | |
| ! | CACATGTGGTCACCTTTTGG+AGG | + | chr2_3:64554175-64554194 | Msa0306110:CDS | 50.0% |
| !! | GTGGTCACCTTTTGGAGGAA+TGG | + | chr2_3:64554180-64554199 | Msa0306110:CDS | 50.0% |
| TGATGGTCCTTTACGGAGGT+CGG | + | chr2_3:64554215-64554234 | Msa0306110:CDS | 50.0% | |
| TGACACGTGAGTTGCGCTAT+AGG | - | chr2_3:64554863-64554882 | None:intergenic | 50.0% | |
| GTTCAAAAGAGGGGAGGGTA+GGG | - | chr2_3:64555063-64555082 | None:intergenic | 50.0% | |
| !! | GGAGGGGAGGGATTTTTAAG+GGG | - | chr2_3:64555112-64555131 | None:intergenic | 50.0% |
| ! | GGGAGGGGAGGGATTTTTAA+GGG | - | chr2_3:64555113-64555132 | None:intergenic | 50.0% |
| ! | TGGGAGGGGAGGGATTTTTA+AGG | - | chr2_3:64555114-64555133 | None:intergenic | 50.0% |
| CCCCATCCAAACACACTCTA+AGG | - | chr2_3:64555158-64555177 | None:intergenic | 50.0% | |
| !!! | GAGTTTTGAGTGGAGGGGAA+GGG | + | chr2_3:64555381-64555400 | Msa0306110:intron | 50.0% |
| ACAGAAGTTCGGCGATCAGT+TGG | - | chr2_3:64555698-64555717 | None:intergenic | 50.0% | |
| GGTTGAGACGGACAGAAGTT+CGG | - | chr2_3:64555709-64555728 | None:intergenic | 50.0% | |
| ! | AGTTTTCATCCCGCCTTGTG+AGG | - | chr2_3:64555730-64555749 | None:intergenic | 50.0% |
| AAGGCGGGATGAAAACTACC+CGG | + | chr2_3:64555733-64555752 | Msa0306110:CDS | 50.0% | |
| AGCAGTATTGCGTGGCTTCA+CGG | - | chr2_3:64555861-64555880 | None:intergenic | 50.0% | |
| CACGCAATACTGCTTTCCGT+GGG | + | chr2_3:64555867-64555886 | Msa0306110:CDS | 50.0% | |
| ACGCAATACTGCTTTCCGTG+GGG | + | chr2_3:64555868-64555887 | Msa0306110:CDS | 50.0% | |
| AATACTGCTTTCCGTGGGGT+TGG | + | chr2_3:64555872-64555891 | Msa0306110:CDS | 50.0% | |
| CGTGGGGTTGGAAGAACTTT+AGG | + | chr2_3:64555884-64555903 | Msa0306110:CDS | 50.0% | |
| GGACCTAGTCAAACTACTGC+CGG | + | chr2_3:64555938-64555957 | Msa0306110:CDS | 50.0% | |
| CTTAGCTGGATTGAGGTCAC+TGG | - | chr2_3:64556022-64556041 | None:intergenic | 50.0% | |
| CAGTGACCTCAATCCAGCTA+AGG | + | chr2_3:64556020-64556039 | Msa0306110:CDS | 50.0% | |
| TGATGCATCAAGACCTGGTG+GGG | + | chr2_3:64556114-64556133 | Msa0306110:CDS | 50.0% | |
| TGGTAATTTCTTGCCCCACC+AGG | - | chr2_3:64556130-64556149 | None:intergenic | 50.0% | |
| GACCAGACTATAGAGCAAGC+TGG | + | chr2_3:64556193-64556212 | Msa0306110:CDS | 50.0% | |
| ! | GGGGGGGAACCTATTGTTTT+TGG | - | chr2_3:64556240-64556259 | None:intergenic | 50.0% |
| AACTAAATAGGGGGAGAGGG+GGG | - | chr2_3:64556257-64556276 | None:intergenic | 50.0% | |
| GCGGTGGAATCGCTTGATGA+GGG | - | chr2_3:64551902-64551921 | None:intergenic | 55.0% | |
| TGCGGTGGAATCGCTTGATG+AGG | - | chr2_3:64551903-64551922 | None:intergenic | 55.0% | |
| TGTGACGGTGATTGCGAAGG+AGG | - | chr2_3:64552136-64552155 | None:intergenic | 55.0% | |
| GACTGTGACGGTGATTGCGA+AGG | - | chr2_3:64552139-64552158 | None:intergenic | 55.0% | |
| AGCTCATACGGAGCACGTGA+CGG | - | chr2_3:64552163-64552182 | None:intergenic | 55.0% | |
| ! | GGCTCTGGTAGTAGGCAAAG+TGG | + | chr2_3:64552214-64552233 | Msa0306110:CDS | 55.0% |
| !! | CCGCAGGAGTATTATGCTGG+TGG | + | chr2_3:64552295-64552314 | Msa0306110:CDS | 55.0% |
| TACCACCCCTGGTAGGATCT+TGG | - | chr2_3:64554005-64554024 | None:intergenic | 55.0% | |
| GGAACCGCCAGATTGCTTTC+CGG | + | chr2_3:64554111-64554130 | Msa0306110:CDS | 55.0% | |
| GGATCTTCCGACCTCCGTAA+AGG | - | chr2_3:64554225-64554244 | None:intergenic | 55.0% | |
| GGTTCAAAAGAGGGGAGGGT+AGG | - | chr2_3:64555064-64555083 | None:intergenic | 55.0% | |
| AGCCCGAGTGTGTTTGGATG+AGG | - | chr2_3:64555353-64555372 | None:intergenic | 55.0% | |
| !!! | GGAGTTTTGAGTGGAGGGGA+AGG | + | chr2_3:64555380-64555399 | Msa0306110:intron | 55.0% |
| TTTGAGTGGAGGGGAAGGGA+AGG | + | chr2_3:64555385-64555404 | Msa0306110:intron | 55.0% | |
| CTGTCCGTCTCAACCTCACA+AGG | + | chr2_3:64555714-64555733 | Msa0306110:CDS | 55.0% | |
| TCCGTCTCAACCTCACAAGG+CGG | + | chr2_3:64555717-64555736 | Msa0306110:CDS | 55.0% | |
| GCAGTATTGCGTGGCTTCAC+GGG | - | chr2_3:64555860-64555879 | None:intergenic | 55.0% | |
| CCACGGAAAGCAGTATTGCG+TGG | - | chr2_3:64555869-64555888 | None:intergenic | 55.0% | |
| CCACGCAATACTGCTTTCCG+TGG | + | chr2_3:64555866-64555885 | Msa0306110:CDS | 55.0% | |
| ! | GCACCGGCAGTAGTTTGACT+AGG | - | chr2_3:64555944-64555963 | None:intergenic | 55.0% |
| ! | AGCAGTAAGTGGGGAAGCAC+CGG | - | chr2_3:64555960-64555979 | None:intergenic | 55.0% |
| ACTAAACCCATTGCTGGCGC+TGG | - | chr2_3:64555983-64556002 | None:intergenic | 55.0% | |
| ACTAAATAGGGGGAGAGGGG+GGG | - | chr2_3:64556256-64556275 | None:intergenic | 55.0% | |
| GTCCAAGATCCTACCAGGGG+TGG | + | chr2_3:64554000-64554019 | Msa0306110:CDS | 60.0% | |
| CTCGCCGGAAAGCAATCTGG+CGG | - | chr2_3:64554118-64554137 | None:intergenic | 60.0% | |
| TGCCTCGCCGGAAAGCAATC+TGG | - | chr2_3:64554121-64554140 | None:intergenic | 60.0% | |
| ! | TCTACTGGCTGGGGAGCAGA+TGG | - | chr2_3:64554147-64554166 | None:intergenic | 60.0% |
| GTTCAACGGATGGGAGGGGA+GGG | - | chr2_3:64555124-64555143 | None:intergenic | 60.0% | |
| AGTTCAACGGATGGGAGGGG+AGG | - | chr2_3:64555125-64555144 | None:intergenic | 60.0% | |
| TGGAGGGGAAGGGAAGGCTT+TGG | + | chr2_3:64555391-64555410 | Msa0306110:intron | 60.0% | |
| GGAGGGGAAGGGAAGGCTTT+GGG | + | chr2_3:64555392-64555411 | Msa0306110:intron | 60.0% | |
| !! | AGGGAAGGCTTTGGGAGGTG+AGG | + | chr2_3:64555400-64555419 | Msa0306110:intron | 60.0% |
| CCCGCCTTGTGAGGTTGAGA+CGG | - | chr2_3:64555721-64555740 | None:intergenic | 60.0% | |
| CCGTCTCAACCTCACAAGGC+GGG | + | chr2_3:64555718-64555737 | Msa0306110:CDS | 60.0% | |
| ! | TGGCGCTGGAGCAGTAAGTG+GGG | - | chr2_3:64555969-64555988 | None:intergenic | 60.0% |
| ! | CTGGCGCTGGAGCAGTAAGT+GGG | - | chr2_3:64555970-64555989 | None:intergenic | 60.0% |
| TACTGCTCCAGCGCCAGCAA+TGG | + | chr2_3:64555973-64555992 | Msa0306110:CDS | 60.0% | |
| ACTGCTCCAGCGCCAGCAAT+GGG | + | chr2_3:64555974-64555993 | Msa0306110:CDS | 60.0% | |
| GCACGTGACGGCGACTGTGA+CGG | - | chr2_3:64552151-64552170 | None:intergenic | 65.0% | |
| CGCCAGATTGCTTTCCGGCG+AGG | + | chr2_3:64554116-64554135 | Msa0306110:CDS | 65.0% | |
| AGCAGATGGCACTGCCTCGC+CGG | - | chr2_3:64554133-64554152 | None:intergenic | 65.0% | |
| !! | GGGGAAGGGAAGGCTTTGGG+AGG | + | chr2_3:64555395-64555414 | Msa0306110:intron | 65.0% |
| ! | GCTGGCGCTGGAGCAGTAAG+TGG | - | chr2_3:64555971-64555990 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 64551818 | 64556443 | 64551818 | ID=Msa0306110;Name=Msa0306110 |
| chr2_3 | mRNA | 64551818 | 64556443 | 64551818 | ID=Msa0306110-mRNA-1;Parent=Msa0306110;Name=Msa0306110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=15|1|1|1|1|1|4|194|420 |
| chr2_3 | exon | 64551818 | 64552326 | 64551818 | ID=Msa0306110-mRNA-1:exon:21511;Parent=Msa0306110-mRNA-1 |
| chr2_3 | exon | 64553990 | 64554266 | 64553990 | ID=Msa0306110-mRNA-1:exon:21512;Parent=Msa0306110-mRNA-1 |
| chr2_3 | exon | 64555659 | 64555754 | 64555659 | ID=Msa0306110-mRNA-1:exon:21513;Parent=Msa0306110-mRNA-1 |
| chr2_3 | exon | 64555854 | 64556443 | 64555854 | ID=Msa0306110-mRNA-1:exon:21514;Parent=Msa0306110-mRNA-1 |
| chr2_3 | five_prime_UTR | 64551818 | 64551832 | 64551818 | ID=Msa0306110-mRNA-1:five_prime_utr;Parent=Msa0306110-mRNA-1 |
| chr2_3 | CDS | 64551833 | 64552326 | 64551833 | ID=Msa0306110-mRNA-1:cds;Parent=Msa0306110-mRNA-1 |
| chr2_3 | CDS | 64553990 | 64554266 | 64553990 | ID=Msa0306110-mRNA-1:cds;Parent=Msa0306110-mRNA-1 |
| chr2_3 | CDS | 64555659 | 64555754 | 64555659 | ID=Msa0306110-mRNA-1:cds;Parent=Msa0306110-mRNA-1 |
| chr2_3 | CDS | 64555854 | 64556249 | 64555854 | ID=Msa0306110-mRNA-1:cds;Parent=Msa0306110-mRNA-1 |
| chr2_3 | three_prime_UTR | 64556250 | 64556443 | 64556250 | ID=Msa0306110-mRNA-1:three_prime_utr;Parent=Msa0306110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
