AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861020 MtrunA17_Chr5g0440631 98.018 454 9 0 242 695 455 908 0.0 937
Msa0861020 MtrunA17_Chr5g0440631 99.142 233 2 0 1 233 99 331 1.32e-156 476
Msa0861020 MtrunA17_Chr3g0118281 86.414 449 59 2 248 695 545 992 0.0 827
Msa0861020 MtrunA17_Chr3g0118281 77.826 230 50 1 1 230 188 416 2.17e-121 386
Msa0861020 MtrunA17_Chr5g0440641 87.004 454 53 3 242 695 445 892 0.0 815
Msa0861020 MtrunA17_Chr5g0440641 83.691 233 28 2 1 233 99 321 7.75e-126 395
Msa0861020 MtrunA17_Chr6g0467081 79.956 454 87 2 242 695 450 899 0.0 761
Msa0861020 MtrunA17_Chr6g0467081 79.828 233 43 1 1 233 98 326 1.97e-121 384
Msa0861020 MtrunA17_Chr3g0121101 62.987 462 157 4 242 694 453 909 0.0 595
Msa0861020 MtrunA17_Chr3g0121101 59.402 234 91 3 1 233 98 328 3.26e-75 260
Msa0861020 MtrunA17_Chr3g0080331 60.102 391 128 3 242 626 256 624 1.80e-165 489
Msa0861020 MtrunA17_Chr3g0080331 58.772 114 45 1 121 234 22 133 5.95e-35 140
Msa0861020 MtrunA17_Chr4g0027701 40.546 476 235 12 248 694 551 1007 7.03e-97 321
Msa0861020 MtrunA17_Chr4g0027701 31.739 230 132 5 7 230 217 427 7.61e-18 88.2
Msa0861020 MtrunA17_Chr2g0308031 40.043 467 245 12 251 694 460 914 1.46e-95 315
Msa0861020 MtrunA17_Chr2g0308031 29.870 231 132 6 7 230 123 330 1.81e-23 106
Msa0861020 MtrunA17_Chr6g0481121 40.741 486 233 14 251 694 636 1108 8.47e-95 317
Msa0861020 MtrunA17_Chr6g0481121 31.169 231 130 7 7 230 298 506 1.22e-21 100
Msa0861020 MtrunA17_Chr4g0027691 39.323 473 247 14 248 694 512 970 1.14e-94 314
Msa0861020 MtrunA17_Chr4g0027691 33.621 232 131 6 7 233 178 391 3.90e-21 99.0
Msa0861020 MtrunA17_Chr1g0204551 39.662 474 248 11 251 694 512 977 1.62e-94 314
Msa0861020 MtrunA17_Chr1g0204551 30.303 231 132 6 7 230 174 382 6.70e-22 101
Msa0861020 MtrunA17_Chr1g0166341 39.787 470 248 12 251 694 518 978 2.50e-93 310
Msa0861020 MtrunA17_Chr1g0166341 29.870 231 133 6 7 230 179 387 1.19e-21 100
Msa0861020 MtrunA17_Chr4g0062941 38.675 468 250 12 251 694 421 875 6.86e-91 302
Msa0861020 MtrunA17_Chr4g0062941 29.915 234 128 9 7 230 84 291 1.59e-18 90.5
Msa0861020 MtrunA17_Chr5g0418071 34.664 476 266 16 248 694 556 1015 9.83e-71 249
Msa0861020 MtrunA17_Chr5g0418071 28.139 231 134 6 9 225 216 428 2.80e-17 86.7
Msa0861020 MtrunA17_Chr4g0043461 35.306 490 258 17 195 647 452 919 5.72e-65 232
Msa0861020 MtrunA17_Chr2g0291701 31.792 519 289 16 219 695 534 1029 7.31e-61 221
Msa0861020 MtrunA17_Chr7g0268301 71.875 96 13 1 269 364 2 83 5.31e-37 134
Msa0861020 MtrunA17_Chr3g0080321 55.462 119 43 2 3 121 81 189 2.49e-29 115
Msa0861020 MtrunA17_Chr5g0448711 60.274 73 25 1 623 695 38 106 9.75e-20 86.3
Msa0861020 MtrunA17_Chr1g0164751 33.140 172 96 5 390 559 124 278 1.84e-14 74.7
Msa0861020 MtrunA17_Chr6g0464401 51.562 64 31 0 383 446 9 72 2.57e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861020 AT2G27040.1 74.107 448 113 3 248 694 478 923 0.0 714
Msa0861020 AT2G27040.1 70.130 231 69 0 1 231 115 345 2.48e-111 358
Msa0861020 AT2G27040.2 74.107 448 113 3 248 694 478 923 0.0 714
Msa0861020 AT2G27040.2 70.130 231 69 0 1 231 115 345 2.48e-111 358
Msa0861020 AT5G21150.1 72.991 448 118 3 248 694 450 895 0.0 699
Msa0861020 AT5G21150.1 66.667 234 70 2 1 233 96 322 1.99e-98 323
Msa0861020 AT2G32940.1 62.584 449 153 2 248 694 442 877 0.0 587
Msa0861020 AT2G32940.1 51.931 233 105 3 3 233 87 314 8.46e-58 211
Msa0861020 AT5G21030.2 63.193 451 134 10 248 694 431 853 0.0 555
Msa0861020 AT5G21030.2 58.621 232 80 2 1 231 84 300 2.68e-77 265
Msa0861020 AT5G21030.1 63.193 451 130 11 248 694 431 849 0.0 549
Msa0861020 AT5G21030.1 58.621 232 80 2 1 231 84 300 2.62e-77 265
Msa0861020 AT2G27880.1 41.631 466 235 12 251 694 546 996 5.02e-101 332
Msa0861020 AT2G27880.1 30.213 235 130 7 7 230 207 418 4.88e-17 86.3
Msa0861020 AT5G43810.4 39.916 476 239 13 251 694 527 987 3.15e-93 311
Msa0861020 AT5G43810.4 29.487 234 137 5 7 233 188 400 4.35e-22 102
Msa0861020 AT5G43810.1 39.916 476 239 13 251 694 527 987 3.15e-93 311
Msa0861020 AT5G43810.1 29.487 234 137 5 7 233 188 400 4.35e-22 102
Msa0861020 AT5G43810.2 39.916 476 239 13 251 694 527 987 3.15e-93 311
Msa0861020 AT5G43810.2 29.487 234 137 5 7 233 188 400 4.35e-22 102
Msa0861020 AT5G43810.3 39.916 476 239 13 251 694 527 987 3.15e-93 311
Msa0861020 AT5G43810.3 29.487 234 137 5 7 233 188 400 4.35e-22 102
Msa0861020 AT1G48410.1 40.042 477 233 11 258 694 584 1047 4.41e-92 309
Msa0861020 AT1G48410.1 29.437 231 134 7 7 230 239 447 4.03e-19 92.8
Msa0861020 AT1G48410.3 40.042 477 233 11 258 694 586 1049 5.02e-92 308
Msa0861020 AT1G48410.3 29.310 232 135 7 7 230 239 449 5.36e-19 92.4
Msa0861020 AT1G48410.2 40.042 477 233 11 258 694 586 1049 5.02e-92 308
Msa0861020 AT1G48410.2 29.310 232 135 7 7 230 239 449 5.36e-19 92.4
Msa0861020 AT1G69440.1 36.629 445 251 14 264 694 562 989 4.95e-74 258
Msa0861020 AT1G69440.1 25.941 239 144 8 3 225 206 427 5.78e-11 66.6
Msa0861020 AT1G31290.3 35.322 419 229 13 254 649 666 1065 2.75e-63 228
Msa0861020 AT1G31290.2 35.322 419 229 13 254 649 704 1103 3.24e-63 228
Msa0861020 AT1G31290.1 35.322 419 229 13 254 649 740 1139 3.49e-63 228
Msa0861020 AT1G31280.1 34.783 414 229 13 254 647 565 957 2.01e-62 225

Find 184 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCCTACTCTCATTT+TGG 0.125101 5_4:+60180396 Msa0861020:CDS
GAAGTTCCATCTCCCATTTC+TGG 0.140891 5_4:-60179552 None:intergenic
GGCAACAATCACCATAAATT+TGG 0.147348 5_4:-60181424 None:intergenic
GCAGACATTGTCCATCAATT+TGG 0.191316 5_4:-60182350 None:intergenic
GCCATCGCTAATGCCTTAAA+AGG 0.218227 5_4:+60177123 Msa0861020:CDS
TTTGACTTACAGTTGAAGTT+TGG 0.257080 5_4:+60179509 Msa0861020:intron
ACTTATGGTTCTGAGCTTAA+TGG 0.263665 5_4:+60176781 Msa0861020:CDS
AACTCATTATCATGTCCTTT+TGG 0.270857 5_4:+60181911 Msa0861020:CDS
TCATCCTCCTTATCTGATAC+TGG 0.280966 5_4:-60180686 None:intergenic
GATCATTGTGGAAGAAATTC+TGG 0.281342 5_4:-60177323 None:intergenic
AGAATTATCAAGAAGCGATT+AGG 0.292990 5_4:+60177157 Msa0861020:CDS
CCTACATCCGTGAAATTCTT+AGG 0.297424 5_4:-60177345 None:intergenic
AGGAAGAACTCTGATCTTTA+TGG 0.298034 5_4:+60180011 Msa0861020:CDS
CAGACATTGTCCATCAATTT+GGG 0.298038 5_4:-60182349 None:intergenic
TTTCAGTCTTGACTGGAATA+AGG 0.302768 5_4:+60177597 Msa0861020:CDS
TGCAAAGTAAATAACAAGTT+TGG 0.304203 5_4:-60182410 None:intergenic
GCAACAATCACCATAAATTT+GGG 0.306455 5_4:-60181423 None:intergenic
AACCAAGAGTACAAAATTAC+TGG 0.311607 5_4:+60177787 Msa0861020:CDS
ATTTGACAACCTCAATGATT+TGG 0.317059 5_4:-60181304 None:intergenic
GGCCCTTGATATCTAAATAT+AGG 0.320167 5_4:+60180609 Msa0861020:CDS
AAAGTGGAACCCCAAATTTA+TGG 0.327746 5_4:+60181413 Msa0861020:CDS
TGAAAGGATCTCTCACATTC+TGG 0.330147 5_4:-60177579 None:intergenic
CATGTTCTTTGTTTGAGTTA+TGG 0.334860 5_4:+60182378 Msa0861020:exon
GAGGGCTGCATTCCAGCTTC+AGG 0.336895 5_4:+60177388 Msa0861020:CDS
CTCTTCCTGTCAGTATCATT+TGG 0.339440 5_4:-60177030 None:intergenic
GCCCTTGATATCTAAATATA+GGG 0.341173 5_4:+60180610 Msa0861020:CDS
TCCAATCTGCTATGCCCATT+TGG 0.342609 5_4:+60182219 Msa0861020:CDS
CTTATGGTTCTGAGCTTAAT+GGG 0.348524 5_4:+60176782 Msa0861020:CDS
GAGGTGGTGCACGCCTAAAC+TGG 0.353469 5_4:-60179905 None:intergenic
CCCACAGTTGCCCAAATTGA+TGG 0.357282 5_4:+60182339 Msa0861020:CDS
TTGACTTACAGTTGAAGTTT+GGG 0.363727 5_4:+60179510 Msa0861020:intron
AACCTGTTAAAATAGAGAAA+TGG 0.366755 5_4:+60179684 Msa0861020:CDS
CTCAGTGTATTGCTCCTACC+AGG 0.367615 5_4:+60180164 Msa0861020:CDS
AAAGCTGATTTCAACTTTGT+AGG 0.368467 5_4:-60177079 None:intergenic
ACTTTGTGTGATGATTCTTC+TGG 0.369516 5_4:-60181446 None:intergenic
CTGAAAATTATGATATTGTC+TGG 0.384283 5_4:-60181056 None:intergenic
GCAAATTTCTTGATGAAAAG+TGG 0.388890 5_4:+60181397 Msa0861020:CDS
GAGAAGACTCTGTTTACTAT+TGG 0.391306 5_4:+60176826 Msa0861020:CDS
TGCCCTATATTTAGATATCA+AGG 0.395995 5_4:-60180612 None:intergenic
GAATTATCAAGAAGCGATTA+GGG 0.397722 5_4:+60177158 Msa0861020:CDS
TTGAAGAAAACGGCCAGTTT+AGG 0.399457 5_4:+60179892 Msa0861020:CDS
GAAGACTTCAATCCCAGAAA+TGG 0.400873 5_4:+60179539 Msa0861020:CDS
AAGTTCCATCTCCCATTTCT+GGG 0.401631 5_4:-60179551 None:intergenic
ACCTGTTAAAATAGAGAAAT+GGG 0.413540 5_4:+60179685 Msa0861020:CDS
ACTTTGTGTGGTCCTGAAGC+TGG 0.418099 5_4:-60177400 None:intergenic
AGGAGGATGAAGGAATAATA+AGG 0.420217 5_4:+60180699 Msa0861020:CDS
CATGTAGAAATCATAATTCC+GGG 0.422697 5_4:-60181629 None:intergenic
GATGTAGGAGGTGGTGTTCT+TGG 0.424732 5_4:+60177360 Msa0861020:CDS
TTTGGACTTCCATGTCCATC+AGG 0.425248 5_4:-60177012 None:intergenic
TTTGATTGCTTTGAAGAAAA+CGG 0.426012 5_4:+60179882 Msa0861020:CDS
AGTGGGCTGTCTTTGAATAT+AGG 0.426346 5_4:+60177420 Msa0861020:CDS
AAAGGACTCTAAAGAATTTG+AGG 0.426856 5_4:+60177746 Msa0861020:CDS
TATTATTACCGCAGCAATTG+AGG 0.427660 5_4:-60180461 None:intergenic
GGGAAAGACCTTGCGTATGA+TGG 0.430816 5_4:+60176802 Msa0861020:CDS
ACATGTAGAAATCATAATTC+CGG 0.431069 5_4:-60181630 None:intergenic
TCACCAGGAGGCACATTATC+CGG 0.432944 5_4:-60181486 None:intergenic
TTGAAGATGTCACTTCAAAC+AGG 0.437609 5_4:+60176887 Msa0861020:CDS
CAACCTTAGCACCCTGAGTT+CGG 0.437681 5_4:-60180640 None:intergenic
CTTTGTGTGATGATTCTTCT+GGG 0.439440 5_4:-60181445 None:intergenic
TGGATGAATGTTAATATTTG+TGG 0.442336 5_4:+60182577 Msa0861020:three_prime_UTR
GCAAAACATTGGTCAGATAC+TGG 0.446295 5_4:-60180195 None:intergenic
ATGACCTTTGCTGCAAGGTC+GGG 0.446337 5_4:+60182483 Msa0861020:three_prime_UTR
AGGCATTAGCGATGGCCTGC+AGG 0.446982 5_4:-60177116 None:intergenic
GTTCTTCCAGCCTGGATCTC+CGG 0.448860 5_4:+60181467 Msa0861020:CDS
GTTTAGGCGTGCACCACCTC+TGG 0.450520 5_4:+60179908 Msa0861020:CDS
GATGAACCTTTGCTGATGTC+TGG 0.453254 5_4:+60182457 Msa0861020:three_prime_UTR
ACAAGCTCTTGAAGATCATC+TGG 0.455050 5_4:-60181951 None:intergenic
CCACTTGAGAAGCAGCCAAA+TGG 0.455401 5_4:-60182234 None:intergenic
TCAGTTCAATGTTCAAAACT+TGG 0.460356 5_4:-60181280 None:intergenic
CACTTGAGAAGCAGCCAAAT+GGG 0.461002 5_4:-60182233 None:intergenic
TGCCTCAAAGATTCCCCTGC+AGG 0.463684 5_4:+60177101 Msa0861020:CDS
TAGGGCATGCGTCCGAACTC+AGG 0.467508 5_4:+60180628 Msa0861020:CDS
GAGATCCTTTCAGTCTTGAC+TGG 0.474223 5_4:+60177590 Msa0861020:CDS
CCATTTGGCTGCTTCTCAAG+TGG 0.476182 5_4:+60182234 Msa0861020:CDS
AAGTCCTCGCACATCACAAC+GGG 0.476378 5_4:-60179726 None:intergenic
GGCATTAGCGATGGCCTGCA+GGG 0.477897 5_4:-60177115 None:intergenic
GTGGTTTGCTGAAAGATCCT+TGG 0.481132 5_4:+60182596 Msa0861020:three_prime_UTR
GGCACATTATCCGGAGATCC+AGG 0.482891 5_4:-60181477 None:intergenic
TTGGGCATGGATGTTTCTCA+TGG 0.483692 5_4:+60180415 Msa0861020:CDS
GATGACCTTTGCTGCAAGGT+CGG 0.484760 5_4:+60182482 Msa0861020:three_prime_UTR
AGCAGACAAAGGAGAAACTT+AGG 0.485208 5_4:-60179981 None:intergenic
CACGTTCAGTCTAAACTACC+AGG 0.486546 5_4:+60179954 Msa0861020:CDS
GGAAAGACCTTGCGTATGAT+GGG 0.488113 5_4:+60176803 Msa0861020:CDS
ACAACCATGATTGTTCATCC+TGG 0.488945 5_4:+60177529 Msa0861020:CDS
AAAATCCAATCTCATCCAAA+AGG 0.492267 5_4:-60181926 None:intergenic
AGATCAGAGTTCTTCCTCTC+AGG 0.495404 5_4:-60180005 None:intergenic
CACACAAAGTTCTTCCAGCC+TGG 0.495690 5_4:+60181459 Msa0861020:CDS
GGCCTGCAGGGGAATCTTTG+AGG 0.495878 5_4:-60177103 None:intergenic
AAGAAATCAACCACAGGCCC+AGG 0.495949 5_4:-60177547 None:intergenic
AAGACTTCAATCCCAGAAAT+GGG 0.497285 5_4:+60179540 Msa0861020:CDS
CATTTGGCTGCTTCTCAAGT+GGG 0.502960 5_4:+60182235 Msa0861020:CDS
GCCAAATGGGCATAGCAGAT+TGG 0.505414 5_4:-60182220 None:intergenic
ATTATTACCGCAGCAATTGA+GGG 0.505728 5_4:-60180460 None:intergenic
ATGATAATGAGTTGGCCTAC+TGG 0.506108 5_4:-60181901 None:intergenic
GAGGGAATTTCAGTTTGTCC+AGG 0.509678 5_4:-60180442 None:intergenic
ATTTGAAATGTGAAGGTCCA+TGG 0.512015 5_4:+60180107 Msa0861020:intron
CAATGATCCTAAGAATTTCA+CGG 0.514283 5_4:+60177338 Msa0861020:CDS
CAACAAGTATTCTCAAACCA+AGG 0.518831 5_4:-60182613 None:intergenic
CAACTTTGTAGGTCTTTGAT+CGG 0.519218 5_4:-60177068 None:intergenic
CATTATCCGGAGATCCAGGC+TGG 0.525864 5_4:-60181473 None:intergenic
TCCATCAATTTGGGCAACTG+TGG 0.526082 5_4:-60182340 None:intergenic
AATTTGGGCAACTGTGGGAT+GGG 0.530026 5_4:-60182334 None:intergenic
TTTGAAACAATAGGGATGGA+TGG 0.531152 5_4:-60180376 None:intergenic
CCTAAGAATTTCACGGATGT+AGG 0.535096 5_4:+60177345 Msa0861020:CDS
GGGCAACTGTGGGATGGGAG+AGG 0.535595 5_4:-60182329 None:intergenic
CAATTTGGGCAACTGTGGGA+TGG 0.535890 5_4:-60182335 None:intergenic
CAACCATGATTGTTCATCCT+GGG 0.535985 5_4:+60177530 Msa0861020:CDS
ATAAAATGTGGAGGAATGAA+AGG 0.536134 5_4:+60179761 Msa0861020:CDS
AACGGGAATGCTAGCCCTGA+TGG 0.537473 5_4:+60176997 Msa0861020:CDS
CAAATGATACTGACAGGAAG+AGG 0.538365 5_4:+60177031 Msa0861020:CDS
AGTCTGCTGAATGTGCTGCT+TGG 0.538423 5_4:+60179307 Msa0861020:intron
GAACCTTTGCTGATGTCTGG+TGG 0.539236 5_4:+60182460 Msa0861020:three_prime_UTR
AAAACCCGACCTTGCAGCAA+AGG 0.539948 5_4:-60182487 None:intergenic
CGTCCGAACTCAGGGTGCTA+AGG 0.540192 5_4:+60180637 Msa0861020:CDS
GTGATGTGCGAGGACTTGTA+AGG 0.542125 5_4:+60179732 Msa0861020:CDS
GGTGGTGTTCTTGGATGCAG+AGG 0.543916 5_4:+60177369 Msa0861020:CDS
GATGTTTCTCATGGTTCACC+TGG 0.546335 5_4:+60180424 Msa0861020:CDS
GAAGTCCAAATGATACTGAC+AGG 0.546381 5_4:+60177025 Msa0861020:CDS
ATTGATCTTCAGCAAAACAT+TGG 0.550562 5_4:-60180206 None:intergenic
GGTGGATGACCTTTGCTGCA+AGG 0.552587 5_4:+60182478 Msa0861020:three_prime_UTR
AGGAGAAACTTAGGAGCCCC+TGG 0.553396 5_4:-60179972 None:intergenic
TCATCTAGCCATGGTGGCAG+CGG 0.556067 5_4:+60182292 Msa0861020:CDS
TGAACTGAGCCAAATCATTG+AGG 0.559983 5_4:+60181295 Msa0861020:CDS
TATTACAGGTTGTAAGCTCA+AGG 0.560495 5_4:+60180582 Msa0861020:intron
CCATCGCTAATGCCTTAAAA+GGG 0.560542 5_4:+60177124 Msa0861020:CDS
AGTACTACTGCTATCTCTGT+TGG 0.560841 5_4:+60182112 Msa0861020:CDS
AAAAGGACATGATAATGAGT+TGG 0.562000 5_4:-60181909 None:intergenic
TATCACGACCGCTGCCACCA+TGG 0.564045 5_4:-60182300 None:intergenic
TCCTTTGTCTGCTTCCTGAG+AGG 0.565365 5_4:+60179991 Msa0861020:CDS
AGGGCATGCGTCCGAACTCA+GGG 0.566072 5_4:+60180629 Msa0861020:CDS
AATTACAGCTGGTCTTTGCA+AGG 0.567257 5_4:-60177823 None:intergenic
AATGCTAGCCCTGATGGACA+TGG 0.567961 5_4:+60177003 Msa0861020:CDS
CAGATACTGGTCGTTCACCC+TGG 0.568760 5_4:-60180182 None:intergenic
TTACAGTTGAAGTTTGGGAA+TGG 0.569594 5_4:+60179515 Msa0861020:intron
AGCTTCAGGACCACACAAAG+TGG 0.572451 5_4:+60177402 Msa0861020:CDS
TTCTTGGCCACAGGTATCAG+AGG 0.572451 5_4:+60182089 Msa0861020:intron
GTTCAAGCCAGTATCAGATA+AGG 0.579234 5_4:+60180679 Msa0861020:CDS
CAAAGACAGCCCACTTTGTG+TGG 0.579631 5_4:-60177412 None:intergenic
AAGAATTTCACGGATGTAGG+AGG 0.581022 5_4:+60177348 Msa0861020:CDS
GTGGTGTTCTTGGATGCAGA+GGG 0.581678 5_4:+60177370 Msa0861020:CDS
TTCTACATGTGTGCTCATGC+GGG 0.581923 5_4:+60181643 Msa0861020:CDS
TCAATCCCAGAAATGGGAGA+TGG 0.583790 5_4:+60179546 Msa0861020:CDS
TTATTCCAGTCAAGACTGAA+AGG 0.584520 5_4:-60177595 None:intergenic
CATAACTCAAACAAAGAACA+TGG 0.585795 5_4:-60182377 None:intergenic
AGGCCCAGGATGAACAATCA+TGG 0.587236 5_4:-60177533 None:intergenic
GTATCAGATAAGGAGGATGA+AGG 0.587451 5_4:+60180689 Msa0861020:CDS
GATTGTTCATCCTGGGCCTG+TGG 0.588790 5_4:+60177537 Msa0861020:CDS
AGGTTGTAAGCTCAAGGCAA+TGG 0.590895 5_4:+60180588 Msa0861020:intron
TCCTCTCAGGAAGCAGACAA+AGG 0.594522 5_4:-60179992 None:intergenic
CGTGACACGTGCATGTCTGA+AGG 0.596984 5_4:-60182533 None:intergenic
TGAAATTCTTAGGATCATTG+TGG 0.598281 5_4:-60177335 None:intergenic
TTGGACTTCCATGTCCATCA+GGG 0.598571 5_4:-60177011 None:intergenic
TCTCCGGATAATGTGCCTCC+TGG 0.601087 5_4:+60181483 Msa0861020:CDS
GTAAGGGATCTGATAAAATG+TGG 0.602054 5_4:+60179749 Msa0861020:CDS
AATTTCACGGATGTAGGAGG+TGG 0.603434 5_4:+60177351 Msa0861020:CDS
TTTCTACATGTGTGCTCATG+CGG 0.606897 5_4:+60181642 Msa0861020:CDS
GCCCTATATTTAGATATCAA+GGG 0.609362 5_4:-60180611 None:intergenic
ACAACAAAATCTGTCATCCC+CGG 0.609557 5_4:+60181611 Msa0861020:CDS
CCATCAATTTGGGCAACTGT+GGG 0.610368 5_4:-60182339 None:intergenic
CAAGCCAGTATCAGATAAGG+AGG 0.610634 5_4:+60180682 Msa0861020:CDS
TCCATGCCCAAAATGAGAGT+AGG 0.612941 5_4:-60180403 None:intergenic
TTTGCTGAAGATCAATGCAA+AGG 0.619675 5_4:+60180213 Msa0861020:CDS
TCAGTGTATTGCTCCTACCA+GGG 0.624276 5_4:+60180165 Msa0861020:CDS
TCTTCTCCCCATCATACGCA+AGG 0.627331 5_4:-60176810 None:intergenic
GCAATCAAGAAATCAACCAC+AGG 0.627952 5_4:-60177553 None:intergenic
TCTGAAACTTCATCTAGCCA+TGG 0.629684 5_4:+60182283 Msa0861020:CDS
TAAAATAGAGAAATGGGCTG+TGG 0.646383 5_4:+60179691 Msa0861020:CDS
TCTGCCCGTTGTGATGTGCG+AGG 0.647167 5_4:+60179722 Msa0861020:CDS
CAACAATCACCATAAATTTG+GGG 0.647316 5_4:-60181422 None:intergenic
GCATTAGCGATGGCCTGCAG+GGG 0.658024 5_4:-60177114 None:intergenic
GCTTCAGGACCACACAAAGT+GGG 0.658254 5_4:+60177403 Msa0861020:CDS
AGGGATCTGATAAAATGTGG+AGG 0.659465 5_4:+60179752 Msa0861020:CDS
TGAAATTCCCTCAATTGCTG+CGG 0.660780 5_4:+60180453 Msa0861020:CDS
ACGTTCAGTCTAAACTACCA+GGG 0.661828 5_4:+60179955 Msa0861020:CDS
CATCCACCAGACATCAGCAA+AGG 0.661951 5_4:-60182463 None:intergenic
TCTGTTCTCAGGGTACCAGT+AGG 0.664166 5_4:+60181886 Msa0861020:intron
GAAAGACCTTGCGTATGATG+GGG 0.671091 5_4:+60176804 Msa0861020:CDS
CAAGTCCTCGCACATCACAA+CGG 0.675833 5_4:-60179727 None:intergenic
CGTTCAGTCTAAACTACCAG+GGG 0.678350 5_4:+60179956 Msa0861020:CDS
TACTGGTCGTTCACCCTGGT+AGG 0.679221 5_4:-60180178 None:intergenic
GAAACTTCATCTAGCCATGG+TGG 0.683294 5_4:+60182286 Msa0861020:CDS
TGATGTGCGAGGACTTGTAA+GGG 0.687534 5_4:+60179733 Msa0861020:CDS
ATGTAGAAATCATAATTCCG+GGG 0.690302 5_4:-60181628 None:intergenic
GAGATGGAACTTCAATAACA+AGG 0.719372 5_4:+60179562 Msa0861020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACATTTATAATAATGAA+AGG - chr5_4:60177228-60177247 None:intergenic 10.0%
!! TTTCAAATAAAATTTCATTA+AGG - chr5_4:60180095-60180114 None:intergenic 10.0%
!! CAACTTTATATATAAAATAA+TGG - chr5_4:60181539-60181558 None:intergenic 10.0%
!!! CATTATTTTATATATAAAGT+TGG + chr5_4:60181537-60181556 Msa0861020:intron 10.0%
!! TACACAAATAAAATATACAA+AGG - chr5_4:60177721-60177740 None:intergenic 15.0%
!!! TTTGTATATTTTATTTGTGT+AGG + chr5_4:60177720-60177739 Msa0861020:intron 15.0%
!!! AGTAAGTATTTTTCTTAAAT+AGG - chr5_4:60178332-60178351 None:intergenic 15.0%
!! ACATAAATTTCATCAAATAA+TGG - chr5_4:60179207-60179226 None:intergenic 15.0%
!!! AAATTTTATTTGAAATGTGA+AGG + chr5_4:60180100-60180119 Msa0861020:intron 15.0%
!! ATATGGAAAATAATATTTCA+AGG - chr5_4:60180747-60180766 None:intergenic 15.0%
!!! TATTATTTTCCATATCTATT+TGG + chr5_4:60180752-60180771 Msa0861020:intron 15.0%
!!! ATTGATTTTTATAATAGTTC+TGG + chr5_4:60181023-60181042 Msa0861020:CDS 15.0%
!!! TTGATTTTTATAATAGTTCT+GGG + chr5_4:60181024-60181043 Msa0861020:CDS 15.0%
!!! ATCTTATTCTTTTAAATTCT+AGG + chr5_4:60181371-60181390 Msa0861020:intron 15.0%
!!! TTTTTTTTTATCAGCTATTT+TGG + chr5_4:60182557-60182576 Msa0861020:three_prime_UTR 15.0%
!! AATAAAATATACAAAGGATC+AGG - chr5_4:60177715-60177734 None:intergenic 20.0%
!!! ATAAGCTAATACACAATTTT+AGG - chr5_4:60178162-60178181 None:intergenic 20.0%
!! TCAGCTATTATGTATAATTT+AGG + chr5_4:60178206-60178225 Msa0861020:intron 20.0%
!! CATATTTGAAAAGAATTGAA+GGG + chr5_4:60178286-60178305 Msa0861020:intron 20.0%
!! CAACTTATCTACATTAAATA+CGG - chr5_4:60178523-60178542 None:intergenic 20.0%
!! AAGTAGGTTAATTAATTCAT+TGG - chr5_4:60178570-60178589 None:intergenic 20.0%
!!! CTGCTTTTATTATTGTTTTT+TGG + chr5_4:60178989-60179008 Msa0861020:intron 20.0%
!!! GATCTACATTTTTAATTTTC+TGG + chr5_4:60179601-60179620 Msa0861020:intron 20.0%
!! GATAATATAAAAGAAACCAA+AGG - chr5_4:60180252-60180271 None:intergenic 20.0%
!!! GCTATTAATGTTGTATTTTA+TGG + chr5_4:60180499-60180518 Msa0861020:intron 20.0%
!!! AATGTTGTATTTTATGGTTT+CGG + chr5_4:60180505-60180524 Msa0861020:intron 20.0%
!! GAAAATAATATTTCAAGGAA+AGG - chr5_4:60180742-60180761 None:intergenic 20.0%
!!! ATGGATCTTTTTTCTTAAAA+AGG - chr5_4:60180838-60180857 None:intergenic 20.0%
!! GTAATACAACAATCTAAAAA+TGG - chr5_4:60180857-60180876 None:intergenic 20.0%
!! ATTACATATGTATAATCTTG+CGG + chr5_4:60180872-60180891 Msa0861020:intron 20.0%
!!! TTGATGGCTTAATTTATTTT+TGG + chr5_4:60180969-60180988 Msa0861020:intron 20.0%
!! TAAATATATGATTGCTTACT+TGG + chr5_4:60181340-60181359 Msa0861020:intron 20.0%
!! ATGAAAAAAAATCAGTATAC+AGG - chr5_4:60181726-60181745 None:intergenic 20.0%
!! CAACTAAAATAAGTATCATA+TGG - chr5_4:60181860-60181879 None:intergenic 20.0%
!!! CTTACAAATTTTTTGTTTCT+TGG + chr5_4:60182073-60182092 Msa0861020:intron 20.0%
!!! ACTTATTTTATGTGCTATTT+TGG + chr5_4:60182657-60182676 Msa0861020:three_prime_UTR 20.0%
!!! GATGTATGCTTTTGAAATTT+GGG + chr5_4:60176922-60176941 Msa0861020:intron 25.0%
!!! ATTTAACTTGACCTTTTTTC+AGG + chr5_4:60176971-60176990 Msa0861020:intron 25.0%
!!! TTTTATTTGTGTAGGCTAAA+AGG + chr5_4:60177728-60177747 Msa0861020:intron 25.0%
! ACAATTCCAAACAGTAAAAA+TGG - chr5_4:60177878-60177897 None:intergenic 25.0%
!! GTTGTTATTAATGAAGATGT+TGG + chr5_4:60177928-60177947 Msa0861020:intron 25.0%
!! CCTTCAATTCTTTTCAAATA+TGG - chr5_4:60178288-60178307 None:intergenic 25.0%
! CCATATTTGAAAAGAATTGA+AGG + chr5_4:60178285-60178304 Msa0861020:intron 25.0%
! ACTCATACATAATTGAGAAA+AGG + chr5_4:60178384-60178403 Msa0861020:intron 25.0%
! AAGAAAAGAAAACAGAAAGT+AGG - chr5_4:60178586-60178605 None:intergenic 25.0%
!!! AATATTATTTGCTGTTTTGC+AGG + chr5_4:60178854-60178873 Msa0861020:intron 25.0%
!!! CATTCCTTATTTTTTTTTCC+TGG + chr5_4:60179013-60179032 Msa0861020:intron 25.0%
! ACAACCAGGAAAAAAAAATA+AGG - chr5_4:60179020-60179039 None:intergenic 25.0%
! AAATAATGGTGAATAGCAAT+GGG - chr5_4:60179193-60179212 None:intergenic 25.0%
! AACCTGTTAAAATAGAGAAA+TGG + chr5_4:60179684-60179703 Msa0861020:CDS 25.0%
! ACCTGTTAAAATAGAGAAAT+GGG + chr5_4:60179685-60179704 Msa0861020:CDS 25.0%
! AAAAAGCAAACAAAACAGAA+TGG - chr5_4:60179843-60179862 None:intergenic 25.0%
!! TTTTCTTCAAAGCAATCAAA+AGG - chr5_4:60179882-60179901 None:intergenic 25.0%
!!! TTTGATTGCTTTGAAGAAAA+CGG + chr5_4:60179882-60179901 Msa0861020:CDS 25.0%
!! TTACAAAAAGGTATATAGCA+TGG - chr5_4:60180056-60180075 None:intergenic 25.0%
!!! CAAACAAATGGATTACAAAA+AGG - chr5_4:60180068-60180087 None:intergenic 25.0%
! CATTAAGGAAATCAAACAAA+TGG - chr5_4:60180080-60180099 None:intergenic 25.0%
!! GATTTTATTCTTTTGTAGCT+TGG + chr5_4:60180319-60180338 Msa0861020:intron 25.0%
! TGTGAATGCTTAAATATTAC+AGG + chr5_4:60180568-60180587 Msa0861020:intron 25.0%
! AATATCTTTGAATACAGATG+TGG - chr5_4:60180779-60180798 None:intergenic 25.0%
! ACATCTGTATTCAAAGATAT+TGG + chr5_4:60180778-60180797 Msa0861020:intron 25.0%
!!! GCTTAATTTATTTTTGGAGT+TGG + chr5_4:60180975-60180994 Msa0861020:intron 25.0%
! CTGAAAATTATGATATTGTC+TGG - chr5_4:60181059-60181078 None:intergenic 25.0%
!! CAGACAATATCATAATTTTC+AGG + chr5_4:60181057-60181076 Msa0861020:CDS 25.0%
! GAAATAGAATGGTAGAAAAT+TGG - chr5_4:60181094-60181113 None:intergenic 25.0%
! AATAAGTCGAAGAAATAGAA+TGG - chr5_4:60181105-60181124 None:intergenic 25.0%
! GTAAGCAATCATATATTTAC+AGG - chr5_4:60181339-60181358 None:intergenic 25.0%
!! CAAAAAAAATATGGTTAGCT+AGG - chr5_4:60181570-60181589 None:intergenic 25.0%
!!! CTAGCTAACCATATTTTTTT+TGG + chr5_4:60181568-60181587 Msa0861020:intron 25.0%
! CTGCAAAACCAAAAAAAATA+TGG - chr5_4:60181579-60181598 None:intergenic 25.0%
!!! CATATTTTTTTTGGTTTTGC+AGG + chr5_4:60181577-60181596 Msa0861020:intron 25.0%
! ACATGTAGAAATCATAATTC+CGG - chr5_4:60181633-60181652 None:intergenic 25.0%
!!! GTTAACCATTGATTTTCATT+TGG + chr5_4:60181792-60181811 Msa0861020:intron 25.0%
! CATGATAATTGCAAACAAAA+AGG - chr5_4:60181821-60181840 None:intergenic 25.0%
!!! CTTTTTGTTTGCAATTATCA+TGG + chr5_4:60181819-60181838 Msa0861020:intron 25.0%
! TTTGTTTGAATTATGTTTCC+TGG + chr5_4:60182015-60182034 Msa0861020:intron 25.0%
! TGCAAAGTAAATAACAAGTT+TGG - chr5_4:60182413-60182432 None:intergenic 25.0%
! TGGATGAATGTTAATATTTG+TGG + chr5_4:60182577-60182596 Msa0861020:three_prime_UTR 25.0%
!!! GGATGTATGCTTTTGAAATT+TGG + chr5_4:60176921-60176940 Msa0861020:intron 30.0%
! AAAGCTGATTTCAACTTTGT+AGG - chr5_4:60177082-60177101 None:intergenic 30.0%
AGAATTATCAAGAAGCGATT+AGG + chr5_4:60177157-60177176 Msa0861020:CDS 30.0%
GAATTATCAAGAAGCGATTA+GGG + chr5_4:60177158-60177177 Msa0861020:CDS 30.0%
TCTTTGTAATAATCTACTGC+AGG + chr5_4:60177283-60177302 Msa0861020:intron 30.0%
CTTTGTAATAATCTACTGCA+GGG + chr5_4:60177284-60177303 Msa0861020:intron 30.0%
TTTGTAATAATCTACTGCAG+GGG + chr5_4:60177285-60177304 Msa0861020:intron 30.0%
TGAAATTCTTAGGATCATTG+TGG - chr5_4:60177338-60177357 None:intergenic 30.0%
CAATGATCCTAAGAATTTCA+CGG + chr5_4:60177338-60177357 Msa0861020:CDS 30.0%
! AAAGGACTCTAAAGAATTTG+AGG + chr5_4:60177746-60177765 Msa0861020:CDS 30.0%
! AGTAATTTTGTACTCTTGGT+TGG - chr5_4:60177788-60177807 None:intergenic 30.0%
! AACCAAGAGTACAAAATTAC+TGG + chr5_4:60177787-60177806 Msa0861020:CDS 30.0%
! AACCAGTAATTTTGTACTCT+TGG - chr5_4:60177792-60177811 None:intergenic 30.0%
AATGAAGATGTTGGTATTGT+AGG + chr5_4:60177937-60177956 Msa0861020:intron 30.0%
ATCTGCCATGTATTAATGTT+GGG + chr5_4:60178069-60178088 Msa0861020:intron 30.0%
! GCTTGACAATTCATTTTCTA+TGG + chr5_4:60178542-60178561 Msa0861020:intron 30.0%
!!! TTTTACTTAGCTTTGCTCAT+TGG + chr5_4:60178670-60178689 Msa0861020:intron 30.0%
TGTGGAATTTCAATAACATC+TGG + chr5_4:60178921-60178940 Msa0861020:intron 30.0%
TAATAAAAGCAGAATACCCT+AGG - chr5_4:60178981-60179000 None:intergenic 30.0%
ACTAACAGCTTCTCAATAAA+GGG - chr5_4:60179049-60179068 None:intergenic 30.0%
TACTAACAGCTTCTCAATAA+AGG - chr5_4:60179050-60179069 None:intergenic 30.0%
!! TCTTTTGTTGAGCTATTTTC+AGG + chr5_4:60179070-60179089 Msa0861020:intron 30.0%
CAAATAATGGTGAATAGCAA+TGG - chr5_4:60179194-60179213 None:intergenic 30.0%
! TTTGACTTACAGTTGAAGTT+TGG + chr5_4:60179509-60179528 Msa0861020:intron 30.0%
TTGACTTACAGTTGAAGTTT+GGG + chr5_4:60179510-60179529 Msa0861020:intron 30.0%
ATAAAATGTGGAGGAATGAA+AGG + chr5_4:60179761-60179780 Msa0861020:CDS 30.0%
ATTTACTGACAAGCATAGAA+AGG + chr5_4:60179809-60179828 Msa0861020:intron 30.0%
AAAAAGAATCTTGCAGAGTT+TGG + chr5_4:60180133-60180152 Msa0861020:CDS 30.0%
ATTGATCTTCAGCAAAACAT+TGG - chr5_4:60180209-60180228 None:intergenic 30.0%
! TTTATTCTTTTGTAGCTTGG+CGG + chr5_4:60180322-60180341 Msa0861020:intron 30.0%
!!! TAGGAGCTTTTGAAACAATA+GGG - chr5_4:60180387-60180406 None:intergenic 30.0%
GCCCTTGATATCTAAATATA+GGG + chr5_4:60180610-60180629 Msa0861020:CDS 30.0%
GCCCTATATTTAGATATCAA+GGG - chr5_4:60180614-60180633 None:intergenic 30.0%
TGCCCTATATTTAGATATCA+AGG - chr5_4:60180615-60180634 None:intergenic 30.0%
!! GCAAACTTTGAAACAGTATA+GGG - chr5_4:60180925-60180944 None:intergenic 30.0%
!! AGCAAACTTTGAAACAGTAT+AGG - chr5_4:60180926-60180945 None:intergenic 30.0%
!!! AGTTGGTTTTATGATATGCA+GGG + chr5_4:60180992-60181011 Msa0861020:intron 30.0%
TCAGTTCAATGTTCAAAACT+TGG - chr5_4:60181283-60181302 None:intergenic 30.0%
ATTTGACAACCTCAATGATT+TGG - chr5_4:60181307-60181326 None:intergenic 30.0%
ATATATGATTGCTTACTTGG+TGG + chr5_4:60181343-60181362 Msa0861020:intron 30.0%
TATATGATTGCTTACTTGGT+GGG + chr5_4:60181344-60181363 Msa0861020:intron 30.0%
! CTTTTCATCAAGAAATTTGC+AGG - chr5_4:60181397-60181416 None:intergenic 30.0%
GCAAATTTCTTGATGAAAAG+TGG + chr5_4:60181397-60181416 Msa0861020:CDS 30.0%
CAACAATCACCATAAATTTG+GGG - chr5_4:60181425-60181444 None:intergenic 30.0%
GCAACAATCACCATAAATTT+GGG - chr5_4:60181426-60181445 None:intergenic 30.0%
ATGTAGAAATCATAATTCCG+GGG - chr5_4:60181631-60181650 None:intergenic 30.0%
CATGTAGAAATCATAATTCC+GGG - chr5_4:60181632-60181651 None:intergenic 30.0%
GGATTCCAAATGAAAATCAA+TGG - chr5_4:60181800-60181819 None:intergenic 30.0%
! AAAAGGACATGATAATGAGT+TGG - chr5_4:60181912-60181931 None:intergenic 30.0%
! AACTCATTATCATGTCCTTT+TGG + chr5_4:60181911-60181930 Msa0861020:CDS 30.0%
AAAATCCAATCTCATCCAAA+AGG - chr5_4:60181929-60181948 None:intergenic 30.0%
CATAACTCAAACAAAGAACA+TGG - chr5_4:60182380-60182399 None:intergenic 30.0%
! CATGTTCTTTGTTTGAGTTA+TGG + chr5_4:60182378-60182397 Msa0861020:exon 30.0%
!! ACTTATGGTTCTGAGCTTAA+TGG + chr5_4:60176781-60176800 Msa0861020:CDS 35.0%
!! CTTATGGTTCTGAGCTTAAT+GGG + chr5_4:60176782-60176801 Msa0861020:CDS 35.0%
GAGAAGACTCTGTTTACTAT+TGG + chr5_4:60176826-60176845 Msa0861020:CDS 35.0%
! TTGAAGATGTCACTTCAAAC+AGG + chr5_4:60176887-60176906 Msa0861020:CDS 35.0%
! TTCAAACAGGTTGAAATGTG+TGG + chr5_4:60176900-60176919 Msa0861020:intron 35.0%
!!! TGACCTTTTTTCAGGAACAA+CGG + chr5_4:60176979-60176998 Msa0861020:intron 35.0%
CAACTTTGTAGGTCTTTGAT+CGG - chr5_4:60177071-60177090 None:intergenic 35.0%
GATCATTGTGGAAGAAATTC+TGG - chr5_4:60177326-60177345 None:intergenic 35.0%
GATGAGAATACAGACAGAAA+AGG - chr5_4:60177458-60177477 None:intergenic 35.0%
TTATTCCAGTCAAGACTGAA+AGG - chr5_4:60177598-60177617 None:intergenic 35.0%
TTTCAGTCTTGACTGGAATA+AGG + chr5_4:60177597-60177616 Msa0861020:CDS 35.0%
GAGCAATTGAGCATAACAAA+TGG - chr5_4:60177670-60177689 None:intergenic 35.0%
ATATACAAAGGATCAGGTCT+AGG - chr5_4:60177709-60177728 None:intergenic 35.0%
!! TTTTGTACTCTTGGTTGGTT+GGG - chr5_4:60177783-60177802 None:intergenic 35.0%
! ATTTTGTACTCTTGGTTGGT+TGG - chr5_4:60177784-60177803 None:intergenic 35.0%
GGGATAGAAAAAATTACAGC+TGG - chr5_4:60177837-60177856 None:intergenic 35.0%
!! GCGTATCCATTTTTACTGTT+TGG + chr5_4:60177869-60177888 Msa0861020:intron 35.0%
! ACTGCAGAGAAATTTTTCTG+CGG - chr5_4:60178040-60178059 None:intergenic 35.0%
GATCTGCCATGTATTAATGT+TGG + chr5_4:60178068-60178087 Msa0861020:intron 35.0%
GCCTTAAAAACAAGTGACTA+TGG + chr5_4:60178876-60178895 Msa0861020:intron 35.0%
!!! GCCATAGTCACTTGTTTTTA+AGG - chr5_4:60178880-60178899 None:intergenic 35.0%
GAGCTAACTAACTATCAAAC+AGG - chr5_4:60179159-60179178 None:intergenic 35.0%
TGATAGTTAGTTAGCTCACA+TGG + chr5_4:60179162-60179181 Msa0861020:intron 35.0%
! TGCAAAATACTTGCTACTGA+TGG + chr5_4:60179465-60179484 Msa0861020:intron 35.0%
TTACAGTTGAAGTTTGGGAA+TGG + chr5_4:60179515-60179534 Msa0861020:intron 35.0%
AAGACTTCAATCCCAGAAAT+GGG + chr5_4:60179540-60179559 Msa0861020:CDS 35.0%
GAGATGGAACTTCAATAACA+AGG + chr5_4:60179562-60179581 Msa0861020:CDS 35.0%
! TAACAGGTTGCACAATTTTC+TGG - chr5_4:60179673-60179692 None:intergenic 35.0%
!!! GCCCATTTCTCTATTTTAAC+AGG - chr5_4:60179689-60179708 None:intergenic 35.0%
!! TAAAATAGAGAAATGGGCTG+TGG + chr5_4:60179691-60179710 Msa0861020:CDS 35.0%
GTAAGGGATCTGATAAAATG+TGG + chr5_4:60179749-60179768 Msa0861020:CDS 35.0%
!!! ATTTTTTCAACTCTGACCAG+AGG - chr5_4:60179927-60179946 None:intergenic 35.0%
AGGAAGAACTCTGATCTTTA+TGG + chr5_4:60180011-60180030 Msa0861020:CDS 35.0%
! ATTTGAAATGTGAAGGTCCA+TGG + chr5_4:60180107-60180126 Msa0861020:intron 35.0%
! GCAAGATTCTTTTTCTTCCA+TGG - chr5_4:60180127-60180146 None:intergenic 35.0%
TTTGCTGAAGATCAATGCAA+AGG + chr5_4:60180213-60180232 Msa0861020:CDS 35.0%
! AGGTATTTTCACTCTTCCTT+TGG + chr5_4:60180233-60180252 Msa0861020:intron 35.0%
GTAGTACGAAAGGAAATTTC+TGG - chr5_4:60180291-60180310 None:intergenic 35.0%
TCCTTTCGTACTACAATTGA+AGG + chr5_4:60180297-60180316 Msa0861020:intron 35.0%
TCCTTCAATTGTAGTACGAA+AGG - chr5_4:60180301-60180320 None:intergenic 35.0%
! TTTGAAACAATAGGGATGGA+TGG - chr5_4:60180379-60180398 None:intergenic 35.0%
!!! AGCTTTTGAAACAATAGGGA+TGG - chr5_4:60180383-60180402 None:intergenic 35.0%
!!! GTAGGAGCTTTTGAAACAAT+AGG - chr5_4:60180388-60180407 None:intergenic 35.0%
! AAAAGCTCCTACTCTCATTT+TGG + chr5_4:60180396-60180415 Msa0861020:CDS 35.0%
! AAAGCTCCTACTCTCATTTT+GGG + chr5_4:60180397-60180416 Msa0861020:CDS 35.0%
ATTATTACCGCAGCAATTGA+GGG - chr5_4:60180463-60180482 None:intergenic 35.0%
TATTATTACCGCAGCAATTG+AGG - chr5_4:60180464-60180483 None:intergenic 35.0%
TATTACAGGTTGTAAGCTCA+AGG + chr5_4:60180582-60180601 Msa0861020:intron 35.0%
GGCCCTTGATATCTAAATAT+AGG + chr5_4:60180609-60180628 Msa0861020:CDS 35.0%
AGGAGGATGAAGGAATAATA+AGG + chr5_4:60180699-60180718 Msa0861020:CDS 35.0%
AGATGTGGACCAAATAGATA+TGG - chr5_4:60180764-60180783 None:intergenic 35.0%
TTACAACAGTTCTCACTTGA+TGG + chr5_4:60180953-60180972 Msa0861020:intron 35.0%
!!! GAGTTGGTTTTATGATATGC+AGG + chr5_4:60180991-60181010 Msa0861020:intron 35.0%
TTCAGTAAAGCACAACAGAA+GGG - chr5_4:60181205-60181224 None:intergenic 35.0%
!! TCCTTTTTGCTGATTGATGT+AGG + chr5_4:60181231-60181250 Msa0861020:intron 35.0%
!! CCTTTTTGCTGATTGATGTA+GGG + chr5_4:60181232-60181251 Msa0861020:intron 35.0%
AAAGTGGAACCCCAAATTTA+TGG + chr5_4:60181413-60181432 Msa0861020:CDS 35.0%
GGCAACAATCACCATAAATT+TGG - chr5_4:60181427-60181446 None:intergenic 35.0%
CTTTGTGTGATGATTCTTCT+GGG - chr5_4:60181448-60181467 None:intergenic 35.0%
ACTTTGTGTGATGATTCTTC+TGG - chr5_4:60181449-60181468 None:intergenic 35.0%
AGTTGTGAAAATCTGTTCTC+AGG + chr5_4:60181875-60181894 Msa0861020:intron 35.0%
GTTGTGAAAATCTGTTCTCA+GGG + chr5_4:60181876-60181895 Msa0861020:intron 35.0%
!!! ATTTTTTGTTTCTTGGCCAC+AGG + chr5_4:60182080-60182099 Msa0861020:intron 35.0%
CAGACATTGTCCATCAATTT+GGG - chr5_4:60182352-60182371 None:intergenic 35.0%
CAACAAGTATTCTCAAACCA+AGG - chr5_4:60182616-60182635 None:intergenic 35.0%
!!! GACCTTTTTTCAGGAACAAC+GGG + chr5_4:60176980-60176999 Msa0861020:intron 40.0%
TTCCCGTTGTTCCTGAAAAA+AGG - chr5_4:60176985-60177004 None:intergenic 40.0%
GAAGTCCAAATGATACTGAC+AGG + chr5_4:60177025-60177044 Msa0861020:CDS 40.0%
CTCTTCCTGTCAGTATCATT+TGG - chr5_4:60177033-60177052 None:intergenic 40.0%
CAAATGATACTGACAGGAAG+AGG + chr5_4:60177031-60177050 Msa0861020:CDS 40.0%
CCATCGCTAATGCCTTAAAA+GGG + chr5_4:60177124-60177143 Msa0861020:CDS 40.0%
! CTCAGTTTCATGCCCTTTTA+AGG - chr5_4:60177139-60177158 None:intergenic 40.0%
CCTACATCCGTGAAATTCTT+AGG - chr5_4:60177348-60177367 None:intergenic 40.0%
CCTAAGAATTTCACGGATGT+AGG + chr5_4:60177345-60177364 Msa0861020:CDS 40.0%
AAGAATTTCACGGATGTAGG+AGG + chr5_4:60177348-60177367 Msa0861020:CDS 40.0%
!! AGTGGGCTGTCTTTGAATAT+AGG + chr5_4:60177420-60177439 Msa0861020:CDS 40.0%
ACAACCATGATTGTTCATCC+TGG + chr5_4:60177529-60177548 Msa0861020:CDS 40.0%
CAACCATGATTGTTCATCCT+GGG + chr5_4:60177530-60177549 Msa0861020:CDS 40.0%
GCAATCAAGAAATCAACCAC+AGG - chr5_4:60177556-60177575 None:intergenic 40.0%
TGAAAGGATCTCTCACATTC+TGG - chr5_4:60177582-60177601 None:intergenic 40.0%
! AAAGGATCAGGTCTAGGTTT+TGG - chr5_4:60177703-60177722 None:intergenic 40.0%
!! AATTACAGCTGGTCTTTGCA+AGG - chr5_4:60177826-60177845 None:intergenic 40.0%
GGATACGCATCAACAGAAAT+GGG - chr5_4:60177857-60177876 None:intergenic 40.0%
TGGATACGCATCAACAGAAA+TGG - chr5_4:60177858-60177877 None:intergenic 40.0%
! GTAGTTGCTGTTCTTCATGA+TGG + chr5_4:60177903-60177922 Msa0861020:intron 40.0%
GGCTTCCCAACATTAATACA+TGG - chr5_4:60178077-60178096 None:intergenic 40.0%
GCATCTAAGTTACCTCAACT+GGG - chr5_4:60178118-60178137 None:intergenic 40.0%
AGCATCTAAGTTACCTCAAC+TGG - chr5_4:60178119-60178138 None:intergenic 40.0%
! AGCTTTTGGACACATGACTT+AGG - chr5_4:60178479-60178498 None:intergenic 40.0%
! ATACGGAGAAAGACTTGCTT+AGG - chr5_4:60178506-60178525 None:intergenic 40.0%
!! AGATCTTTGAAGTGTGGACA+GGG - chr5_4:60178720-60178739 None:intergenic 40.0%
!! AAGATCTTTGAAGTGTGGAC+AGG - chr5_4:60178721-60178740 None:intergenic 40.0%
!! AAGGGAAGATCTTTGAAGTG+TGG - chr5_4:60178726-60178745 None:intergenic 40.0%
ACTTCAAAGATCTTCCCTTG+TGG + chr5_4:60178727-60178746 Msa0861020:intron 40.0%
ATTCCACAGTTACGTAGCAT+GGG - chr5_4:60178909-60178928 None:intergenic 40.0%
AATTCCACAGTTACGTAGCA+TGG - chr5_4:60178910-60178929 None:intergenic 40.0%
ATAAAGGGTGAATGACAACC+AGG - chr5_4:60179034-60179053 None:intergenic 40.0%
ACATGCATTCAGCTTACAGA+TGG - chr5_4:60179395-60179414 None:intergenic 40.0%
GAAGACTTCAATCCCAGAAA+TGG + chr5_4:60179539-60179558 Msa0861020:CDS 40.0%
AAGTTCCATCTCCCATTTCT+GGG - chr5_4:60179554-60179573 None:intergenic 40.0%
AGGGATCTGATAAAATGTGG+AGG + chr5_4:60179752-60179771 Msa0861020:CDS 40.0%
TTGAAGAAAACGGCCAGTTT+AGG + chr5_4:60179892-60179911 Msa0861020:CDS 40.0%
ACGTTCAGTCTAAACTACCA+GGG + chr5_4:60179955-60179974 Msa0861020:CDS 40.0%
AGCAGACAAAGGAGAAACTT+AGG - chr5_4:60179984-60180003 None:intergenic 40.0%
GCAAAACATTGGTCAGATAC+TGG - chr5_4:60180198-60180217 None:intergenic 40.0%
TGAAATTCCCTCAATTGCTG+CGG + chr5_4:60180453-60180472 Msa0861020:CDS 40.0%
GTTCAAGCCAGTATCAGATA+AGG + chr5_4:60180679-60180698 Msa0861020:CDS 40.0%
TCATCCTCCTTATCTGATAC+TGG - chr5_4:60180689-60180708 None:intergenic 40.0%
GTATCAGATAAGGAGGATGA+AGG + chr5_4:60180689-60180708 Msa0861020:CDS 40.0%
GTTCAGTAAAGCACAACAGA+AGG - chr5_4:60181206-60181225 None:intergenic 40.0%
CCCTACATCAATCAGCAAAA+AGG - chr5_4:60181235-60181254 None:intergenic 40.0%
! TTTGCTGATTGATGTAGGGA+TGG + chr5_4:60181236-60181255 Msa0861020:intron 40.0%
TGAACTGAGCCAAATCATTG+AGG + chr5_4:60181295-60181314 Msa0861020:CDS 40.0%
ACAACAAAATCTGTCATCCC+CGG + chr5_4:60181611-60181630 Msa0861020:CDS 40.0%
TTTCTACATGTGTGCTCATG+CGG + chr5_4:60181642-60181661 Msa0861020:CDS 40.0%
! ATGATAATGAGTTGGCCTAC+TGG - chr5_4:60181904-60181923 None:intergenic 40.0%
! CATGTCCTTTTGGATGAGAT+TGG + chr5_4:60181921-60181940 Msa0861020:CDS 40.0%
ACAAGCTCTTGAAGATCATC+TGG - chr5_4:60181954-60181973 None:intergenic 40.0%
CTCTCTCTCATATGTGTAAG+TGG + chr5_4:60181977-60181996 Msa0861020:intron 40.0%
TCATTGAGCATCTGAATACC+AGG - chr5_4:60182036-60182055 None:intergenic 40.0%
AGTACTACTGCTATCTCTGT+TGG + chr5_4:60182112-60182131 Msa0861020:CDS 40.0%
! TCTGAAACTTCATCTAGCCA+TGG + chr5_4:60182283-60182302 Msa0861020:CDS 40.0%
GCAGACATTGTCCATCAATT+TGG - chr5_4:60182353-60182372 None:intergenic 40.0%
GGAAAGACCTTGCGTATGAT+GGG + chr5_4:60176803-60176822 Msa0861020:CDS 45.0%
GAAAGACCTTGCGTATGATG+GGG + chr5_4:60176804-60176823 Msa0861020:CDS 45.0%
TTGGACTTCCATGTCCATCA+GGG - chr5_4:60177014-60177033 None:intergenic 45.0%
TTTGGACTTCCATGTCCATC+AGG - chr5_4:60177015-60177034 None:intergenic 45.0%
GCCATCGCTAATGCCTTAAA+AGG + chr5_4:60177123-60177142 Msa0861020:CDS 45.0%
!!! CCCTTTTAAGGCATTAGCGA+TGG - chr5_4:60177127-60177146 None:intergenic 45.0%
AATTTCACGGATGTAGGAGG+TGG + chr5_4:60177351-60177370 Msa0861020:CDS 45.0%
GAGATCCTTTCAGTCTTGAC+TGG + chr5_4:60177590-60177609 Msa0861020:CDS 45.0%
! AGGTTCACTCTGAAGAAGAG+AGG + chr5_4:60177957-60177976 Msa0861020:intron 45.0%
TCCTCTGTATCATCTTCTCC+GGG - chr5_4:60177990-60178009 None:intergenic 45.0%
CTCCTCTGTATCATCTTCTC+CGG - chr5_4:60177991-60178010 None:intergenic 45.0%
ACCAACATTTGTCCCAGTTG+AGG + chr5_4:60178103-60178122 Msa0861020:intron 45.0%
ACCTCAACTGGGACAAATGT+TGG - chr5_4:60178107-60178126 None:intergenic 45.0%
! CTTGCTTAGGCACAAGCTTT+TGG - chr5_4:60178493-60178512 None:intergenic 45.0%
! GGCTTTGGTATAGCGTTGAA+GGG - chr5_4:60178699-60178718 None:intergenic 45.0%
CTTCCCTTGTGGAAAAGTCT+AGG + chr5_4:60178738-60178757 Msa0861020:intron 45.0%
! CTGCCTAGACTTTTCCACAA+GGG - chr5_4:60178744-60178763 None:intergenic 45.0%
! TCTGCCTAGACTTTTCCACA+AGG - chr5_4:60178745-60178764 None:intergenic 45.0%
! TCTGGCTTCACACAAGTTGA+CGG + chr5_4:60178939-60178958 Msa0861020:intron 45.0%
TCAATCCCAGAAATGGGAGA+TGG + chr5_4:60179546-60179565 Msa0861020:CDS 45.0%
GAAGTTCCATCTCCCATTTC+TGG - chr5_4:60179555-60179574 None:intergenic 45.0%
TGATGTGCGAGGACTTGTAA+GGG + chr5_4:60179733-60179752 Msa0861020:CDS 45.0%
! TTTTCAACTCTGACCAGAGG+TGG - chr5_4:60179924-60179943 None:intergenic 45.0%
CACGTTCAGTCTAAACTACC+AGG + chr5_4:60179954-60179973 Msa0861020:CDS 45.0%
CGTTCAGTCTAAACTACCAG+GGG + chr5_4:60179956-60179975 Msa0861020:CDS 45.0%
AGATCAGAGTTCTTCCTCTC+AGG - chr5_4:60180008-60180027 None:intergenic 45.0%
TCAGTGTATTGCTCCTACCA+GGG + chr5_4:60180165-60180184 Msa0861020:CDS 45.0%
! GGCGGCATGAATTCTCTTTT+AGG + chr5_4:60180340-60180359 Msa0861020:CDS 45.0%
! TCCTACTCTCATTTTGGGCA+TGG + chr5_4:60180402-60180421 Msa0861020:CDS 45.0%
TCCATGCCCAAAATGAGAGT+AGG - chr5_4:60180406-60180425 None:intergenic 45.0%
TTGGGCATGGATGTTTCTCA+TGG + chr5_4:60180415-60180434 Msa0861020:CDS 45.0%
GATGTTTCTCATGGTTCACC+TGG + chr5_4:60180424-60180443 Msa0861020:CDS 45.0%
GAGGGAATTTCAGTTTGTCC+AGG - chr5_4:60180445-60180464 None:intergenic 45.0%
AGGTTGTAAGCTCAAGGCAA+TGG + chr5_4:60180588-60180607 Msa0861020:intron 45.0%
CAAGCCAGTATCAGATAAGG+AGG + chr5_4:60180682-60180701 Msa0861020:CDS 45.0%
!! TGGTTTTGCAGGTACTGTTG+TGG + chr5_4:60181588-60181607 Msa0861020:intron 45.0%
TTCTACATGTGTGCTCATGC+GGG + chr5_4:60181643-60181662 Msa0861020:CDS 45.0%
TAGTACTCCTCTGATACCTG+TGG - chr5_4:60182099-60182118 None:intergenic 45.0%
TCCAATCTGCTATGCCCATT+TGG + chr5_4:60182219-60182238 Msa0861020:CDS 45.0%
CACTTGAGAAGCAGCCAAAT+GGG - chr5_4:60182236-60182255 None:intergenic 45.0%
CATTTGGCTGCTTCTCAAGT+GGG + chr5_4:60182235-60182254 Msa0861020:CDS 45.0%
GAAACTTCATCTAGCCATGG+TGG + chr5_4:60182286-60182305 Msa0861020:CDS 45.0%
AATTTGGGCAACTGTGGGAT+GGG - chr5_4:60182337-60182356 None:intergenic 45.0%
CCATCAATTTGGGCAACTGT+GGG - chr5_4:60182342-60182361 None:intergenic 45.0%
TCCATCAATTTGGGCAACTG+TGG - chr5_4:60182343-60182362 None:intergenic 45.0%
GATGAACCTTTGCTGATGTC+TGG + chr5_4:60182457-60182476 Msa0861020:three_prime_UTR 45.0%
!! GTGGTTTGCTGAAAGATCCT+TGG + chr5_4:60182596-60182615 Msa0861020:three_prime_UTR 45.0%
!! TTATTTAATATAAAATAACA+AGG + chr5_4:60177251-60177270 Msa0861020:intron 5.0%
!! TATTTAATATAAAATAACAA+GGG + chr5_4:60177252-60177271 Msa0861020:intron 5.0%
GGGAAAGACCTTGCGTATGA+TGG + chr5_4:60176802-60176821 Msa0861020:CDS 50.0%
TCTTCTCCCCATCATACGCA+AGG - chr5_4:60176813-60176832 None:intergenic 50.0%
! AATGCTAGCCCTGATGGACA+TGG + chr5_4:60177003-60177022 Msa0861020:CDS 50.0%
GATGTAGGAGGTGGTGTTCT+TGG + chr5_4:60177360-60177379 Msa0861020:CDS 50.0%
GTGGTGTTCTTGGATGCAGA+GGG + chr5_4:60177370-60177389 Msa0861020:CDS 50.0%
ACTTTGTGTGGTCCTGAAGC+TGG - chr5_4:60177403-60177422 None:intergenic 50.0%
AGCTTCAGGACCACACAAAG+TGG + chr5_4:60177402-60177421 Msa0861020:CDS 50.0%
GCTTCAGGACCACACAAAGT+GGG + chr5_4:60177403-60177422 Msa0861020:CDS 50.0%
CAAAGACAGCCCACTTTGTG+TGG - chr5_4:60177415-60177434 None:intergenic 50.0%
AGGCCCAGGATGAACAATCA+TGG - chr5_4:60177536-60177555 None:intergenic 50.0%
AAGAAATCAACCACAGGCCC+AGG - chr5_4:60177550-60177569 None:intergenic 50.0%
!! AAGAAGAGAGGTGCTGTTCC+CGG + chr5_4:60177969-60177988 Msa0861020:intron 50.0%
TCCCGGAGAAGATGATACAG+AGG + chr5_4:60177986-60178005 Msa0861020:intron 50.0%
GGGACAAATGTTGGTCGCTT+TGG - chr5_4:60178098-60178117 None:intergenic 50.0%
! GGGCTTTGGTATAGCGTTGA+AGG - chr5_4:60178700-60178719 None:intergenic 50.0%
TTGAAGTGTGGACAGGGCTT+TGG - chr5_4:60178714-60178733 None:intergenic 50.0%
! CTGGCTTCACACAAGTTGAC+GGG + chr5_4:60178940-60178959 Msa0861020:intron 50.0%
! CTTCACACAAGTTGACGGGA+GGG + chr5_4:60178944-60178963 Msa0861020:intron 50.0%
! AGTCTGCTGAATGTGCTGCT+TGG + chr5_4:60179307-60179326 Msa0861020:intron 50.0%
AAGTCCTCGCACATCACAAC+GGG - chr5_4:60179729-60179748 None:intergenic 50.0%
CAAGTCCTCGCACATCACAA+CGG - chr5_4:60179730-60179749 None:intergenic 50.0%
GTGATGTGCGAGGACTTGTA+AGG + chr5_4:60179732-60179751 Msa0861020:CDS 50.0%
TCCTTTGTCTGCTTCCTGAG+AGG + chr5_4:60179991-60180010 Msa0861020:CDS 50.0%
TCCTCTCAGGAAGCAGACAA+AGG - chr5_4:60179995-60180014 None:intergenic 50.0%
CTCAGTGTATTGCTCCTACC+AGG + chr5_4:60180164-60180183 Msa0861020:CDS 50.0%
CAACCTTAGCACCCTGAGTT+CGG - chr5_4:60180643-60180662 None:intergenic 50.0%
CACACAAAGTTCTTCCAGCC+TGG + chr5_4:60181459-60181478 Msa0861020:CDS 50.0%
! TCACCAGGAGGCACATTATC+CGG - chr5_4:60181489-60181508 None:intergenic 50.0%
! TCTGTTCTCAGGGTACCAGT+AGG + chr5_4:60181886-60181905 Msa0861020:intron 50.0%
TTCTTGGCCACAGGTATCAG+AGG + chr5_4:60182089-60182108 Msa0861020:intron 50.0%
GCCAAATGGGCATAGCAGAT+TGG - chr5_4:60182223-60182242 None:intergenic 50.0%
CCACTTGAGAAGCAGCCAAA+TGG - chr5_4:60182237-60182256 None:intergenic 50.0%
CCATTTGGCTGCTTCTCAAG+TGG + chr5_4:60182234-60182253 Msa0861020:CDS 50.0%
CAATTTGGGCAACTGTGGGA+TGG - chr5_4:60182338-60182357 None:intergenic 50.0%
CCCACAGTTGCCCAAATTGA+TGG + chr5_4:60182339-60182358 Msa0861020:CDS 50.0%
GAACCTTTGCTGATGTCTGG+TGG + chr5_4:60182460-60182479 Msa0861020:three_prime_UTR 50.0%
CATCCACCAGACATCAGCAA+AGG - chr5_4:60182466-60182485 None:intergenic 50.0%
GATGACCTTTGCTGCAAGGT+CGG + chr5_4:60182482-60182501 Msa0861020:three_prime_UTR 50.0%
ATGACCTTTGCTGCAAGGTC+GGG + chr5_4:60182483-60182502 Msa0861020:three_prime_UTR 50.0%
AAAACCCGACCTTGCAGCAA+AGG - chr5_4:60182490-60182509 None:intergenic 50.0%
AACGGGAATGCTAGCCCTGA+TGG + chr5_4:60176997-60177016 Msa0861020:CDS 55.0%
TGCCTCAAAGATTCCCCTGC+AGG + chr5_4:60177101-60177120 Msa0861020:CDS 55.0%
GGTGGTGTTCTTGGATGCAG+AGG + chr5_4:60177369-60177388 Msa0861020:CDS 55.0%
GATTGTTCATCCTGGGCCTG+TGG + chr5_4:60177537-60177556 Msa0861020:CDS 55.0%
CTAGGCAGAAGCCACAAGAG+CGG + chr5_4:60178756-60178775 Msa0861020:intron 55.0%
AGAAGCCACAAGAGCGGATG+AGG + chr5_4:60178762-60178781 Msa0861020:intron 55.0%
GAAGCCACAAGAGCGGATGA+GGG + chr5_4:60178763-60178782 Msa0861020:intron 55.0%
AAGACCCTCATCCGCTCTTG+TGG - chr5_4:60178770-60178789 None:intergenic 55.0%
AGAGCGGATGAGGGTCTTGA+CGG + chr5_4:60178772-60178791 Msa0861020:intron 55.0%
GAGCCCATGCTACGTAACTG+TGG + chr5_4:60178903-60178922 Msa0861020:intron 55.0%
! GCTTCACACAAGTTGACGGG+AGG + chr5_4:60178943-60178962 Msa0861020:intron 55.0%
! AGTTGACGGGAGGGTTTTGC+AGG + chr5_4:60178953-60178972 Msa0861020:intron 55.0%
! GAGGGTTTTGCAGGCTCCTA+GGG + chr5_4:60178962-60178981 Msa0861020:intron 55.0%
AGGAGAAACTTAGGAGCCCC+TGG - chr5_4:60179975-60179994 None:intergenic 55.0%
TACTGGTCGTTCACCCTGGT+AGG - chr5_4:60180181-60180200 None:intergenic 55.0%
CAGATACTGGTCGTTCACCC+TGG - chr5_4:60180185-60180204 None:intergenic 55.0%
GTTCTTCCAGCCTGGATCTC+CGG + chr5_4:60181467-60181486 Msa0861020:CDS 55.0%
CATTATCCGGAGATCCAGGC+TGG - chr5_4:60181476-60181495 None:intergenic 55.0%
GGCACATTATCCGGAGATCC+AGG - chr5_4:60181480-60181499 None:intergenic 55.0%
TCTCCGGATAATGTGCCTCC+TGG + chr5_4:60181483-60181502 Msa0861020:CDS 55.0%
!! TTCTGAAGCAGCAGCTCACC+AGG - chr5_4:60181504-60181523 None:intergenic 55.0%
TCATCTAGCCATGGTGGCAG+CGG + chr5_4:60182292-60182311 Msa0861020:CDS 55.0%
GGTGGATGACCTTTGCTGCA+AGG + chr5_4:60182478-60182497 Msa0861020:three_prime_UTR 55.0%
CGTGACACGTGCATGTCTGA+AGG - chr5_4:60182536-60182555 None:intergenic 55.0%
GGCCTGCAGGGGAATCTTTG+AGG - chr5_4:60177106-60177125 None:intergenic 60.0%
GCATTAGCGATGGCCTGCAG+GGG - chr5_4:60177117-60177136 None:intergenic 60.0%
GGCATTAGCGATGGCCTGCA+GGG - chr5_4:60177118-60177137 None:intergenic 60.0%
AGGCATTAGCGATGGCCTGC+AGG - chr5_4:60177119-60177138 None:intergenic 60.0%
GAGGGCTGCATTCCAGCTTC+AGG + chr5_4:60177388-60177407 Msa0861020:CDS 60.0%
! GGAGGGTTTTGCAGGCTCCT+AGG + chr5_4:60178961-60178980 Msa0861020:intron 60.0%
TCTGCCCGTTGTGATGTGCG+AGG + chr5_4:60179722-60179741 Msa0861020:CDS 60.0%
GAGGTGGTGCACGCCTAAAC+TGG - chr5_4:60179908-60179927 None:intergenic 60.0%
GTTTAGGCGTGCACCACCTC+TGG + chr5_4:60179908-60179927 Msa0861020:CDS 60.0%
TAGGGCATGCGTCCGAACTC+AGG + chr5_4:60180628-60180647 Msa0861020:CDS 60.0%
AGGGCATGCGTCCGAACTCA+GGG + chr5_4:60180629-60180648 Msa0861020:CDS 60.0%
! CGTCCGAACTCAGGGTGCTA+AGG + chr5_4:60180637-60180656 Msa0861020:CDS 60.0%
TGAAGCAGCAGCTCACCAGG+AGG - chr5_4:60181501-60181520 None:intergenic 60.0%
TATCACGACCGCTGCCACCA+TGG - chr5_4:60182303-60182322 None:intergenic 60.0%
GGGCAACTGTGGGATGGGAG+AGG - chr5_4:60182332-60182351 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60176772 60182722 60176772 ID=Msa0861020;Name=Msa0861020
chr5_4 mRNA 60176772 60182722 60176772 ID=Msa0861020-mRNA-1;Parent=Msa0861020;Name=Msa0861020-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.88|0.89|0.94|1|1|19|329|695
chr5_4 exon 60176772 60176908 60176772 ID=Msa0861020-mRNA-1:exon:18542;Parent=Msa0861020-mRNA-1
chr5_4 exon 60176993 60177217 60176993 ID=Msa0861020-mRNA-1:exon:18543;Parent=Msa0861020-mRNA-1
chr5_4 exon 60177305 60177441 60177305 ID=Msa0861020-mRNA-1:exon:18544;Parent=Msa0861020-mRNA-1
chr5_4 exon 60177521 60177618 60177521 ID=Msa0861020-mRNA-1:exon:18545;Parent=Msa0861020-mRNA-1
chr5_4 exon 60177742 60177839 60177742 ID=Msa0861020-mRNA-1:exon:18546;Parent=Msa0861020-mRNA-1
chr5_4 exon 60179309 60179354 60179309 ID=Msa0861020-mRNA-1:exon:18547;Parent=Msa0861020-mRNA-1
chr5_4 exon 60179521 60179583 60179521 ID=Msa0861020-mRNA-1:exon:18548;Parent=Msa0861020-mRNA-1
chr5_4 exon 60179674 60179787 60179674 ID=Msa0861020-mRNA-1:exon:18549;Parent=Msa0861020-mRNA-1
chr5_4 exon 60179867 60180032 60179867 ID=Msa0861020-mRNA-1:exon:18550;Parent=Msa0861020-mRNA-1
chr5_4 exon 60180122 60180234 60180122 ID=Msa0861020-mRNA-1:exon:18551;Parent=Msa0861020-mRNA-1
chr5_4 exon 60180337 60180474 60180337 ID=Msa0861020-mRNA-1:exon:18552;Parent=Msa0861020-mRNA-1
chr5_4 exon 60180590 60180720 60180590 ID=Msa0861020-mRNA-1:exon:18553;Parent=Msa0861020-mRNA-1
chr5_4 exon 60181013 60181078 60181013 ID=Msa0861020-mRNA-1:exon:18554;Parent=Msa0861020-mRNA-1
chr5_4 exon 60181253 60181316 60181253 ID=Msa0861020-mRNA-1:exon:18555;Parent=Msa0861020-mRNA-1
chr5_4 exon 60181393 60181504 60181393 ID=Msa0861020-mRNA-1:exon:18556;Parent=Msa0861020-mRNA-1
chr5_4 exon 60181599 60181672 60181599 ID=Msa0861020-mRNA-1:exon:18557;Parent=Msa0861020-mRNA-1
chr5_4 exon 60181897 60181991 60181897 ID=Msa0861020-mRNA-1:exon:18558;Parent=Msa0861020-mRNA-1
chr5_4 exon 60182102 60182133 60182102 ID=Msa0861020-mRNA-1:exon:18559;Parent=Msa0861020-mRNA-1
chr5_4 exon 60182215 60182722 60182215 ID=Msa0861020-mRNA-1:exon:18560;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60176772 60176908 60176772 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60176993 60177217 60176993 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60177305 60177441 60177305 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60177521 60177618 60177521 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60177742 60177839 60177742 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60179309 60179354 60179309 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60179521 60179583 60179521 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60179674 60179787 60179674 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60179867 60180032 60179867 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60180122 60180234 60180122 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60180337 60180474 60180337 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60180590 60180720 60180590 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60181013 60181078 60181013 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60181253 60181316 60181253 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60181393 60181504 60181393 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60181599 60181672 60181599 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60181897 60181991 60181897 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60182102 60182133 60182102 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 CDS 60182215 60182393 60182215 ID=Msa0861020-mRNA-1:cds;Parent=Msa0861020-mRNA-1
chr5_4 three_prime_UTR 60182394 60182722 60182394 ID=Msa0861020-mRNA-1:three_prime_utr;Parent=Msa0861020-mRNA-1
Gene Sequence

>Msa0861020

GTTCAAGAAACTTATGGTTCTGAGCTTAATGGGAAAGACCTTGCGTATGATGGGGAGAAGACTCTGTTTACTATTGGCTCACTTGCTCAGAACAAGCTCGAGTTTACTGTTGTTCTTGAAGATGTCACTTCAAACAGGAACAACGGGAATGCTAGCCCTGATGGACATGGAAGTCCAAATGATACTGACAGGAAGAGGTTGAAAAAATCATACCGATCAAAGACCTACAAAGTTGAAATCAGCTTTGCCTCAAAGATTCCCCTGCAGGCCATCGCTAATGCCTTAAAAGGGCATGAAACTGAGAATTATCAAGAAGCGATTAGGGTTCTTGACATTATCTTGAGACAACATGCTGCTAAACAGGGCTGTCTGCTCGTTCGCCAGAATTTCTTCCACAATGATCCTAAGAATTTCACGGATGTAGGAGGTGGTGTTCTTGGATGCAGAGGGCTGCATTCCAGCTTCAGGACCACACAAAGTGGGCTGTCTTTGAATATAGACGTGTCAACAACCATGATTGTTCATCCTGGGCCTGTGGTTGATTTCTTGATTGCAAACCAGAATGTGAGAGATCCTTTCAGTCTTGACTGGAATAAGGCTAAAAGGACTCTAAAGAATTTGAGGATCACTACTAGCCCAACCAACCAAGAGTACAAAATTACTGGTTTAAGTGAAATGCCTTGCAAAGACCAGCTTCTGCTGAATGTGCTGCTTGGTTTGATTGTTTGTCAGCTTGAAAATTTGAAGTTTGGGAATGGCGAAGACTTCAATCCCAGAAATGGGAGATGGAACTTCAATAACAAGAAAATTGTGCAACCTGTTAAAATAGAGAAATGGGCTGTGGTGAACTTTTCTGCCCGTTGTGATGTGCGAGGACTTGTAAGGGATCTGATAAAATGTGGAGGAATGAAAGGAATTCAAGTTGAGCAGCCTTTTGATTGCTTTGAAGAAAACGGCCAGTTTAGGCGTGCACCACCTCTGGTCAGAGTTGAAAAAATGTTCGAACACGTTCAGTCTAAACTACCAGGGGCTCCTAAGTTTCTCCTTTGTCTGCTTCCTGAGAGGAAGAACTCTGATCTTTATGGTCCATGGAAGAAAAAGAATCTTGCAGAGTTTGGAATTGTTACTCAGTGTATTGCTCCTACCAGGGTGAACGACCAGTATCTGACCAATGTTTTGCTGAAGATCAATGCAAAGCTTGGCGGCATGAATTCTCTTTTAGGTGTTGAACACTCTCCATCCATCCCTATTGTTTCAAAAGCTCCTACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGACAAACTGAAATTCCCTCAATTGCTGCGGTTGTAAGCTCAAGGCAATGGCCCTTGATATCTAAATATAGGGCATGCGTCCGAACTCAGGGTGCTAAGGTTGAAATGATTGACAATCTGTTCAAGCCAGTATCAGATAAGGAGGATGAAGGAATAATAAGGGAACTTTTGATTGATTTTTATAATAGTTCTGGGAACAGAAAACCAGACAATATCATAATTTTCAGGGATGGTGTCAGCGAGTCTCAGTTCAACCAAGTTTTGAACATTGAACTGAGCCAAATCATTGAGGCCTGCAAATTTCTTGATGAAAAGTGGAACCCCAAATTTATGGTGATTGTTGCCCAGAAGAATCATCACACAAAGTTCTTCCAGCCTGGATCTCCGGATAATGTGCCTCCTGGTACTGTTGTGGACAACAAAATCTGTCATCCCCGGAATTATGATTTCTACATGTGTGCTCATGCGGGAATGATTGGTACCAGTAGGCCAACTCATTATCATGTCCTTTTGGATGAGATTGGATTTTCTCCAGATGATCTTCAAGAGCTTGTGCACTCTCTCTCATATGTGTATCAGAGGAGTACTACTGCTATCTCTGTTGTTGCTCCAATCTGCTATGCCCATTTGGCTGCTTCTCAAGTGGGACAGTTCATGAAGTTTGAAGACAAGTCTGAAACTTCATCTAGCCATGGTGGCAGCGGTCGTGATATCAATGCCTCTCCCATCCCACAGTTGCCCAAATTGATGGACAATGTCTGCAACTCCATGTTCTTTGTTTGA
Protein sequence

>Msa0861020

VQETYGSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLEDVTSNRNNGNASPDGHGSPNDTDRKRLKKSYRSKTYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFTDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVHPGPVVDFLIANQNVRDPFSLDWNKAKRTLKNLRITTSPTNQEYKITGLSEMPCKDQLLLNVLLGLIVCQLENLKFGNGEDFNPRNGRWNFNNKKIVQPVKIEKWAVVNFSARCDVRGLVRDLIKCGGMKGIQVEQPFDCFEENGQFRRAPPLVRVEKMFEHVQSKLPGAPKFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQTEIPSIAAVVSSRQWPLISKYRACVRTQGAKVEMIDNLFKPVSDKEDEGIIRELLIDFYNSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDEKWNPKFMVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLMDNVCNSMFFV*