AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861490 MtrunA17_Chr5g0395281 98.662 299 4 0 1 299 1 299 0.0 614
Msa0861490 MtrunA17_Chr4g0039971 51.429 350 114 11 1 299 2 346 4.84e-109 320
Msa0861490 MtrunA17_Chr5g0395231 60.976 246 70 6 78 299 5 248 5.02e-93 276
Msa0861490 MtrunA17_Chr3g0115821 76.510 149 29 1 1 143 1 149 2.57e-82 252
Msa0861490 MtrunA17_Chr5g0410961 42.105 342 147 10 1 299 1 334 2.05e-73 229
Msa0861490 MtrunA17_Chr6g0453471 51.174 213 83 3 1 192 1 213 9.48e-69 217
Msa0861490 MtrunA17_Chr2g0323411 67.347 147 46 1 1 147 1 145 5.45e-68 214
Msa0861490 MtrunA17_Chr4g0048511 68.571 140 43 1 1 139 1 140 6.23e-68 215
Msa0861490 MtrunA17_Chr2g0281071 71.538 130 36 1 1 129 1 130 1.28e-67 214
Msa0861490 MtrunA17_Chr7g0217741 66.917 133 44 0 1 133 1 133 1.88e-65 207
Msa0861490 MtrunA17_Chr4g0042671 67.424 132 43 0 1 132 1 132 4.11e-64 207
Msa0861490 MtrunA17_Chr8g0349261 70.769 130 36 2 1 128 1 130 9.25e-64 202
Msa0861490 MtrunA17_Chr7g0274581 70.339 118 35 0 1 118 1 118 3.89e-60 190
Msa0861490 MtrunA17_Chr1g0187761 72.881 118 32 0 1 118 1 118 1.48e-59 191
Msa0861490 MtrunA17_Chr7g0270891 70.833 120 35 0 12 131 12 131 1.55e-59 194
Msa0861490 MtrunA17_Chr3g0110351 66.142 127 43 0 1 127 1 127 7.30e-59 191
Msa0861490 MtrunA17_Chr5g0434571 64.844 128 45 0 1 128 37 164 7.58e-59 192
Msa0861490 MtrunA17_Chr4g0057031 64.062 128 46 0 1 128 1 128 1.67e-58 188
Msa0861490 MtrunA17_Chr1g0193371 68.333 120 38 0 12 131 12 131 3.72e-58 190
Msa0861490 MtrunA17_Chr4g0037141 62.500 128 48 0 1 128 1 128 5.11e-58 187
Msa0861490 MtrunA17_Chr1g0193801 68.333 120 38 0 12 131 12 131 6.34e-58 190
Msa0861490 MtrunA17_Chr1g0211161 66.400 125 42 0 12 136 13 137 7.15e-58 185
Msa0861490 MtrunA17_Chr1g0203411 68.644 118 37 0 1 118 1 118 1.46e-57 187
Msa0861490 MtrunA17_Chr3g0131121 61.832 131 50 0 1 131 1 131 4.11e-57 186
Msa0861490 MtrunA17_Chr3g0117091 65.600 125 43 0 12 136 12 136 4.64e-57 187
Msa0861490 MtrunA17_Chr4g0058631 67.500 120 39 0 12 131 12 131 8.01e-57 187
Msa0861490 MtrunA17_Chr5g0435101 61.111 126 49 0 2 127 1 126 8.87e-57 182
Msa0861490 MtrunA17_Chr7g0261281 67.797 118 38 0 1 118 1 118 4.62e-56 182
Msa0861490 MtrunA17_Chr1g0167661 68.376 117 37 0 1 117 1 117 5.70e-56 181
Msa0861490 MtrunA17_Chr1g0167691 67.521 117 38 0 1 117 1 117 7.85e-56 181
Msa0861490 MtrunA17_Chr8g0385321 60.938 128 50 0 1 128 1 128 1.07e-55 182
Msa0861490 MtrunA17_Chr6g0452271 54.225 142 65 0 1 142 1 142 1.80e-55 182
Msa0861490 MtrunA17_Chr2g0309911 66.087 115 39 0 12 126 11 125 2.36e-55 181
Msa0861490 MtrunA17_Chr7g0228891 57.718 149 63 0 1 149 1 149 9.74e-55 179
Msa0861490 MtrunA17_Chr7g0217221 65.254 118 41 0 1 118 1 118 1.84e-54 178
Msa0861490 MtrunA17_Chr3g0121241 61.290 124 48 0 5 128 35 158 2.80e-54 178
Msa0861490 MtrunA17_Chr3g0103281 60.938 128 50 0 1 128 1 128 7.15e-54 178
Msa0861490 MtrunA17_Chr3g0092401 63.025 119 44 0 1 119 2 120 1.36e-53 177
Msa0861490 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 3.80e-53 177
Msa0861490 MtrunA17_Chr5g0417821 61.667 120 46 0 11 130 6 125 1.31e-52 174
Msa0861490 MtrunA17_Chr7g0254411 63.200 125 44 1 1 123 1 125 1.60e-52 175
Msa0861490 MtrunA17_Chr7g0275911 64.655 116 41 0 1 116 1 116 1.62e-52 172
Msa0861490 MtrunA17_Chr7g0271241 66.667 123 41 0 12 134 12 134 3.01e-52 175
Msa0861490 MtrunA17_Chr4g0060721 62.931 116 43 0 1 116 2 117 1.31e-51 172
Msa0861490 MtrunA17_Chr2g0323351 62.712 118 44 0 1 118 1 118 1.97e-51 169
Msa0861490 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 3.07e-51 171
Msa0861490 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 1.55e-50 169
Msa0861490 MtrunA17_Chr4g0044421 60.317 126 49 1 2 126 1 126 2.09e-50 165
Msa0861490 MtrunA17_Chr4g0070641 63.025 119 44 0 1 119 1 119 2.24e-50 164
Msa0861490 MtrunA17_Chr2g0330041 61.017 118 46 0 8 125 8 125 2.35e-50 171
Msa0861490 MtrunA17_Chr4g0070611 63.025 119 44 0 1 119 1 119 5.85e-50 167
Msa0861490 MtrunA17_Chr8g0342521 60.331 121 48 0 12 132 12 132 9.18e-50 168
Msa0861490 MtrunA17_Chr1g0151941 45.411 207 89 7 1 198 1 192 1.19e-49 165
Msa0861490 MtrunA17_Chr8g0387421 65.138 109 38 0 8 116 8 116 4.72e-49 166
Msa0861490 MtrunA17_Chr4g0022931 60.684 117 45 1 1 116 1 117 5.27e-49 164
Msa0861490 MtrunA17_Chr4g0028311 59.231 130 51 2 1 129 1 129 5.87e-49 165
Msa0861490 MtrunA17_Chr8g0342541 60.345 116 46 0 8 123 8 123 6.04e-49 166
Msa0861490 MtrunA17_Chr2g0311221 66.972 109 36 0 3 111 5 113 7.57e-49 165
Msa0861490 MtrunA17_Chr4g0022891 62.832 113 42 0 1 113 1 113 9.80e-49 162
Msa0861490 MtrunA17_Chr4g0022881 59.649 114 46 0 1 114 1 114 1.07e-48 162
Msa0861490 MtrunA17_Chr4g0022911 61.017 118 45 1 1 117 1 118 1.41e-48 163
Msa0861490 MtrunA17_Chr5g0395221 84.091 88 14 0 1 88 1 88 2.58e-48 156
Msa0861490 MtrunA17_Chr1g0194951 57.364 129 55 0 1 129 1 129 2.76e-48 165
Msa0861490 MtrunA17_Chr4g0022901 60.169 118 46 1 1 117 1 118 4.64e-48 161
Msa0861490 MtrunA17_Chr7g0264641 54.610 141 60 3 1 140 1 138 5.16e-48 161
Msa0861490 MtrunA17_Chr5g0397231 66.019 103 35 0 8 110 8 110 5.58e-47 160
Msa0861490 MtrunA17_Chr3g0135311 59.322 118 47 1 1 117 1 118 8.08e-46 158
Msa0861490 MtrunA17_Chr4g0032401 52.778 144 55 2 2 132 1 144 1.51e-45 157
Msa0861490 MtrunA17_Chr1g0152011 59.322 118 47 1 1 117 1 118 1.66e-45 157
Msa0861490 MtrunA17_Chr5g0400821 58.475 118 48 1 1 117 1 118 3.14e-45 155
Msa0861490 MtrunA17_Chr1g0203441 63.208 106 39 0 13 118 14 119 5.88e-45 153
Msa0861490 MtrunA17_Chr2g0328771 62.857 105 39 0 12 116 20 124 7.06e-45 154
Msa0861490 MtrunA17_Chr2g0327351 60.360 111 43 1 1 110 1 111 1.27e-44 154
Msa0861490 MtrunA17_Chr7g0247131 74.419 86 22 0 43 128 9 94 1.47e-44 152
Msa0861490 MtrunA17_Chr3g0099131 61.468 109 42 0 10 118 39 147 1.96e-44 158
Msa0861490 MtrunA17_Chr3g0080861 62.500 104 39 0 12 115 37 140 3.38e-44 157
Msa0861490 MtrunA17_Chr1g0194291 57.143 119 51 0 4 122 13 131 3.67e-44 151
Msa0861490 MtrunA17_Chr8g0342481 60.360 111 43 1 8 117 8 118 5.30e-44 154
Msa0861490 MtrunA17_Chr3g0088461 63.303 109 40 0 8 116 18 126 5.49e-44 153
Msa0861490 MtrunA17_Chr1g0209661 53.279 122 57 0 6 127 21 142 5.66e-44 152
Msa0861490 MtrunA17_Chr7g0228231 58.407 113 47 0 6 118 8 120 6.85e-44 149
Msa0861490 MtrunA17_Chr1g0186061 56.481 108 47 0 8 115 16 123 7.51e-44 150
Msa0861490 MtrunA17_Chr6g0450101 57.895 114 48 0 6 119 8 121 1.33e-43 148
Msa0861490 MtrunA17_Chr8g0354661 39.111 225 117 6 12 224 37 253 1.41e-43 156
Msa0861490 MtrunA17_Chr1g0168661 56.481 108 47 0 8 115 17 124 1.95e-43 149
Msa0861490 MtrunA17_Chr1g0154031 64.423 104 37 0 12 115 76 179 2.43e-43 153
Msa0861490 MtrunA17_Chr4g0055981 58.772 114 47 0 12 125 55 168 4.03e-43 147
Msa0861490 MtrunA17_Chr7g0269831 61.207 116 45 0 1 116 1 116 1.31e-42 149
Msa0861490 MtrunA17_Chr6g0470971 60.748 107 42 0 9 115 11 117 1.53e-42 147
Msa0861490 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 2.54e-42 147
Msa0861490 MtrunA17_Chr6g0487491 55.556 126 47 2 1 117 1 126 1.80e-41 144
Msa0861490 MtrunA17_Chr2g0322521 63.208 106 39 0 10 115 27 132 2.11e-41 147
Msa0861490 MtrunA17_Chr1g0194301 50.820 122 60 0 8 129 29 150 6.00e-41 143
Msa0861490 MtrunA17_Chr4g0072751 57.658 111 46 1 1 110 1 111 6.07e-41 145
Msa0861490 MtrunA17_Chr8g0343831 55.932 118 48 1 1 118 1 114 6.54e-41 142
Msa0861490 MtrunA17_Chr5g0434931 54.054 111 51 0 11 121 34 144 9.62e-41 143
Msa0861490 MtrunA17_Chr7g0240821 59.406 101 41 0 16 116 5 105 1.24e-40 141
Msa0861490 MtrunA17_Chr5g0434911 56.075 107 47 0 11 117 20 126 2.50e-40 141
Msa0861490 MtrunA17_Chr5g0434831 57.944 107 45 0 11 117 6 112 2.93e-40 139
Msa0861490 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 7.06e-39 132
Msa0861490 MtrunA17_Chr7g0220341 55.963 109 46 1 11 117 24 132 1.63e-38 137
Msa0861490 MtrunA17_Chr2g0293911 55.556 117 52 0 6 122 18 134 9.44e-38 136
Msa0861490 MtrunA17_Chr7g0228991 54.206 107 49 0 11 117 28 134 1.42e-37 134
Msa0861490 MtrunA17_Chr5g0434841 55.140 107 48 0 11 117 19 125 2.86e-37 134
Msa0861490 MtrunA17_Chr1g0180391 56.190 105 46 0 12 116 19 123 3.03e-37 132
Msa0861490 MtrunA17_Chr5g0440781 48.855 131 63 3 13 142 13 140 3.64e-37 130
Msa0861490 MtrunA17_Chr4g0068921 53.913 115 53 0 8 122 20 134 1.64e-36 129
Msa0861490 MtrunA17_Chr8g0360111 54.902 102 46 0 11 112 24 125 2.11e-36 131
Msa0861490 MtrunA17_Chr5g0440761 48.855 131 63 3 13 142 13 140 2.46e-36 130
Msa0861490 MtrunA17_Chr5g0441141 48.855 131 63 3 13 142 13 140 3.28e-36 130
Msa0861490 MtrunA17_Chr2g0327821 53.846 104 48 0 12 115 6 109 1.07e-35 128
Msa0861490 MtrunA17_Chr2g0294811 59.783 92 37 0 1 92 1 92 4.63e-35 123
Msa0861490 MtrunA17_Chr3g0099141 59.770 87 35 0 8 94 36 122 7.73e-35 123
Msa0861490 MtrunA17_Chr2g0323321 57.447 94 39 1 1 94 1 93 1.61e-34 121
Msa0861490 MtrunA17_Chr5g0441131 43.605 172 83 6 13 182 10 169 1.84e-34 124
Msa0861490 MtrunA17_Chr4g0030881 50.442 113 49 1 13 118 8 120 4.08e-34 125
Msa0861490 MtrunA17_Chr1g0192411 48.760 121 61 1 1 121 1 120 5.48e-34 128
Msa0861490 MtrunA17_Chr4g0013361 53.846 104 47 1 12 114 10 113 6.35e-34 125
Msa0861490 MtrunA17_Chr8g0334881 49.541 109 54 1 7 114 5 113 1.07e-33 125
Msa0861490 MtrunA17_Chr8g0342531 55.056 89 40 0 1 89 1 89 1.19e-32 118
Msa0861490 MtrunA17_Chr8g0342511 64.474 76 27 0 12 87 12 87 1.36e-32 116
Msa0861490 MtrunA17_Chr3g0093811 49.565 115 47 2 43 156 13 117 7.53e-32 119
Msa0861490 MtrunA17_Chr4g0008551 50.877 114 49 3 14 126 38 145 7.86e-31 118
Msa0861490 MtrunA17_Chr6g0454921 51.351 111 53 1 14 124 15 124 1.22e-30 114
Msa0861490 MtrunA17_Chr5g0401731 50.909 110 51 2 14 122 15 122 1.07e-29 115
Msa0861490 MtrunA17_Chr4g0053431 52.830 106 41 2 14 115 5 105 1.36e-29 113
Msa0861490 MtrunA17_Chr8g0342461 61.039 77 29 1 14 89 14 90 3.95e-29 108
Msa0861490 MtrunA17_Chr8g0342471 61.039 77 29 1 14 89 14 90 1.20e-28 107
Msa0861490 MtrunA17_Chr7g0238631 52.830 106 47 2 12 116 111 214 1.11e-27 112
Msa0861490 MtrunA17_Chr3g0133601 49.020 102 51 1 14 115 37 137 1.23e-27 107
Msa0861490 MtrunA17_Chr3g0139671 49.057 106 51 2 12 116 83 186 8.12e-27 110
Msa0861490 MtrunA17_Chr3g0139671 35.000 100 63 2 14 112 33 131 4.57e-14 72.8
Msa0861490 MtrunA17_Chr7g0229101 63.380 71 26 0 43 113 3 73 3.39e-26 102
Msa0861490 MtrunA17_Chr1g0157731 48.113 106 52 2 12 116 89 192 4.71e-26 108
Msa0861490 MtrunA17_Chr1g0157731 35.000 100 63 2 14 112 39 137 5.84e-14 72.4
Msa0861490 MtrunA17_Chr5g0429661 44.762 105 55 2 12 115 120 222 4.97e-26 105
Msa0861490 MtrunA17_Chr3g0117511 47.115 104 52 2 14 116 183 284 6.85e-26 106
Msa0861490 MtrunA17_Chr7g0229131 58.667 75 31 0 43 117 3 77 7.59e-26 100
Msa0861490 MtrunA17_Chr4g0058991 46.602 103 52 2 14 115 209 309 8.18e-26 106
Msa0861490 MtrunA17_Chr6g0480581 38.686 137 80 3 14 149 4 137 2.12e-24 99.0
Msa0861490 MtrunA17_Chr5g0434901 56.338 71 31 0 43 113 4 74 3.89e-24 94.7
Msa0861490 MtrunA17_Chr5g0437321 48.598 107 51 3 8 112 12 116 9.12e-24 98.2
Msa0861490 MtrunA17_Chr7g0228531 44.118 102 55 2 14 115 220 319 1.56e-23 99.8
Msa0861490 MtrunA17_Chr4g0042501 46.226 106 54 2 14 118 105 208 2.59e-23 99.0
Msa0861490 MtrunA17_Chr5g0425591 50.000 82 40 1 13 93 10 91 1.34e-22 89.7
Msa0861490 MtrunA17_Chr6g0453751 48.913 92 38 2 11 93 19 110 2.08e-22 90.5
Msa0861490 MtrunA17_Chr5g0417621 43.636 110 59 2 10 118 130 237 4.38e-22 95.5
Msa0861490 MtrunA17_Chr6g0460661 45.918 98 50 2 14 110 16 111 5.54e-22 90.1
Msa0861490 MtrunA17_Chr5g0397841 42.857 98 55 1 12 109 108 204 3.11e-21 93.2
Msa0861490 MtrunA17_Chr1g0177901 47.126 87 45 1 24 110 4 89 7.02e-21 88.6
Msa0861490 MtrunA17_Chr3g0125801 42.478 113 62 2 4 115 6 116 1.29e-20 89.7
Msa0861490 MtrunA17_Chr7g0228401 42.969 128 62 5 25 149 290 409 1.73e-20 91.3
Msa0861490 MtrunA17_Chr7g0228481 41.237 97 55 2 14 110 220 314 1.34e-19 88.6
Msa0861490 MtrunA17_Chr6g0460671 40.187 107 61 2 14 119 99 203 4.00e-19 86.3
Msa0861490 MtrunA17_Chr7g0238651 37.624 101 61 1 17 115 10 110 6.48e-19 85.9
Msa0861490 MtrunA17_Chr7g0254261 43.689 103 55 2 14 115 89 189 1.56e-18 84.7
Msa0861490 MtrunA17_Chr7g0233061 42.000 100 49 3 14 110 180 273 4.43e-18 83.6
Msa0861490 MtrunA17_Chr1g0193901 51.471 68 32 1 2 68 1 68 1.18e-16 74.3
Msa0861490 MtrunA17_Chr1g0193891 51.471 68 32 1 2 68 1 68 1.18e-16 74.3
Msa0861490 MtrunA17_Chr1g0193871 51.471 68 32 1 2 68 1 68 1.18e-16 74.3
Msa0861490 MtrunA17_Chr1g0193881 51.471 68 32 1 2 68 1 68 1.18e-16 74.3
Msa0861490 MtrunA17_Chr5g0416341 38.095 105 64 1 17 121 29 132 1.19e-16 79.7
Msa0861490 MtrunA17_Chr4g0042621 68.889 45 14 0 88 132 14 58 1.67e-16 78.6
Msa0861490 MtrunA17_Chr7g0247141 61.702 47 17 1 1 46 1 47 2.26e-15 69.3
Msa0861490 MtrunA17_Chr8g0362231 34.513 113 69 2 7 115 11 122 2.26e-14 73.2
Msa0861490 MtrunA17_Chr5g0434871 56.818 44 19 0 74 117 2 45 1.79e-13 64.7
Msa0861490 MtrunA17_Chr3g0145551 70.270 37 11 0 92 128 2 38 7.30e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861490 AT5G16770.4 50.150 333 124 10 1 299 1 325 1.86e-93 280
Msa0861490 AT5G16770.3 50.150 333 124 10 1 299 1 325 1.86e-93 280
Msa0861490 AT5G16770.1 50.150 333 124 10 1 299 1 325 3.32e-93 280
Msa0861490 AT5G16770.2 50.150 333 124 10 1 299 1 325 3.32e-93 280
Msa0861490 AT3G02940.2 49.057 318 135 8 1 299 1 310 5.34e-90 270
Msa0861490 AT3G02940.1 49.057 318 135 8 1 299 1 310 1.61e-89 270
Msa0861490 AT3G02940.3 49.057 318 135 8 1 299 1 310 1.61e-89 270
Msa0861490 AT5G10280.1 50.362 276 106 6 1 249 1 272 9.35e-82 250
Msa0861490 AT1G34670.1 76.923 143 30 1 1 143 1 140 5.70e-78 241
Msa0861490 AT5G65230.1 79.389 131 27 0 1 131 1 131 2.06e-76 236
Msa0861490 AT4G21440.1 68.707 147 46 0 1 147 1 147 1.42e-72 227
Msa0861490 AT4G17785.2 38.567 363 145 9 1 299 1 349 1.46e-71 224
Msa0861490 AT4G17785.1 38.292 363 146 9 1 299 1 349 6.48e-71 223
Msa0861490 AT3G61250.1 74.219 128 33 0 1 128 1 128 6.99e-70 219
Msa0861490 AT5G15310.4 69.466 131 40 0 1 131 1 131 3.34e-68 213
Msa0861490 AT5G15310.1 69.466 131 40 0 1 131 1 131 9.96e-68 214
Msa0861490 AT5G15310.2 69.466 131 40 0 1 131 1 131 1.23e-67 213
Msa0861490 AT3G01140.2 68.421 133 42 0 1 133 1 133 1.48e-67 214
Msa0861490 AT3G01140.1 67.669 133 43 0 1 133 44 176 2.42e-66 213
Msa0861490 AT4G05100.1 69.231 130 39 1 1 129 1 130 1.31e-65 209
Msa0861490 AT4G28110.1 68.992 129 40 0 1 129 1 129 1.62e-64 204
Msa0861490 AT5G54230.1 53.646 192 73 2 12 203 12 187 2.32e-64 205
Msa0861490 AT5G60890.1 65.625 128 44 0 1 128 1 128 3.59e-61 196
Msa0861490 AT4G22680.1 67.188 128 42 0 1 128 1 128 4.36e-60 192
Msa0861490 AT1G22640.1 56.376 149 65 0 1 149 1 149 5.14e-60 192
Msa0861490 AT1G57560.2 51.412 177 80 2 1 172 1 176 6.47e-60 192
Msa0861490 AT1G66230.1 65.625 128 44 0 1 128 1 128 6.61e-60 192
Msa0861490 AT1G57560.1 67.500 120 39 0 12 131 12 131 1.06e-59 193
Msa0861490 AT1G18570.1 61.268 142 54 1 1 141 1 142 1.67e-59 194
Msa0861490 AT5G61420.2 64.844 128 45 0 1 128 1 128 2.58e-59 194
Msa0861490 AT5G26660.1 59.864 147 58 1 12 157 12 158 4.35e-59 192
Msa0861490 AT5G16600.1 65.152 132 46 0 1 132 1 132 4.41e-59 192
Msa0861490 AT4G12350.1 65.625 128 44 0 1 128 1 128 9.36e-59 190
Msa0861490 AT5G07690.1 64.844 128 45 0 1 128 1 128 2.88e-58 190
Msa0861490 AT4G34990.1 63.281 128 47 0 1 128 1 128 4.70e-58 187
Msa0861490 AT4G09460.1 63.780 127 46 0 1 127 1 127 7.44e-58 186
Msa0861490 AT1G09540.1 70.085 117 35 0 12 128 12 128 1.61e-57 189
Msa0861490 AT1G74080.1 62.595 131 49 0 1 131 1 131 1.84e-57 188
Msa0861490 AT4G38620.1 44.186 215 100 5 1 214 1 196 2.31e-57 186
Msa0861490 AT5G07700.1 63.281 128 47 0 1 128 1 128 3.79e-57 187
Msa0861490 AT5G07700.2 63.281 128 47 0 1 128 1 128 3.79e-57 187
Msa0861490 AT2G16720.1 62.205 127 48 0 1 127 1 127 6.16e-57 184
Msa0861490 AT1G35515.1 61.905 126 48 0 1 126 1 126 1.61e-56 182
Msa0861490 AT3G13540.1 62.400 125 47 0 4 128 15 139 4.56e-56 182
Msa0861490 AT3G23250.1 68.966 116 36 0 1 116 1 116 5.70e-56 182
Msa0861490 AT3G12720.1 68.696 115 36 0 12 126 22 136 5.90e-56 183
Msa0861490 AT2G31180.1 47.208 197 83 3 1 180 1 193 1.68e-55 180
Msa0861490 AT4G01680.3 63.359 131 48 0 1 131 1 131 1.70e-55 180
Msa0861490 AT1G06180.1 69.828 116 35 0 1 116 1 116 3.72e-55 179
Msa0861490 AT5G62320.1 60.606 132 45 1 3 127 4 135 9.04e-55 178
Msa0861490 AT4G01680.1 67.500 120 39 0 12 131 12 131 1.01e-54 181
Msa0861490 AT5G56110.1 60.156 128 51 0 1 128 1 128 3.59e-54 179
Msa0861490 AT1G56160.1 38.436 307 154 8 3 297 5 288 7.16e-54 177
Msa0861490 AT5G14340.1 61.069 131 51 0 1 131 13 143 1.34e-53 176
Msa0861490 AT3G28910.1 63.115 122 45 0 1 122 1 122 1.36e-53 177
Msa0861490 AT3G47600.1 63.866 119 43 0 1 119 1 119 2.90e-53 177
Msa0861490 AT1G74430.1 60.769 130 51 0 1 130 1 130 1.78e-52 173
Msa0861490 AT1G08810.1 55.862 145 61 1 1 145 1 142 6.29e-52 172
Msa0861490 AT5G62470.2 62.185 119 45 0 1 119 1 119 7.31e-52 174
Msa0861490 AT4G01680.2 61.364 132 39 1 12 131 12 143 2.70e-51 172
Msa0861490 AT1G18710.1 59.398 133 54 0 1 133 1 133 4.85e-51 169
Msa0861490 AT1G79180.1 65.517 116 40 0 3 118 5 120 8.78e-51 169
Msa0861490 AT1G74650.1 63.025 119 44 0 1 119 1 119 9.38e-51 171
Msa0861490 AT5G49330.1 62.931 116 43 0 1 116 1 116 2.03e-50 170
Msa0861490 AT5G62470.1 62.185 119 44 1 1 119 1 118 3.53e-50 169
Msa0861490 AT3G13890.2 60.156 128 51 0 12 139 12 139 6.07e-50 169
Msa0861490 AT1G63910.1 56.296 135 59 0 8 142 8 142 1.16e-49 169
Msa0861490 AT1G16490.1 64.912 114 40 0 3 116 5 118 2.84e-49 165
Msa0861490 AT3G62610.1 62.931 116 43 0 1 116 1 116 3.86e-49 167
Msa0861490 AT2G47460.1 62.931 116 43 0 1 116 1 116 6.08e-49 167
Msa0861490 AT3G12820.1 63.793 116 42 0 3 118 5 120 9.59e-49 162
Msa0861490 AT3G28470.1 56.115 139 61 0 1 139 1 139 4.39e-47 160
Msa0861490 AT2G36890.1 58.268 127 52 1 1 126 1 127 5.53e-47 160
Msa0861490 AT3G13890.1 56.204 137 51 1 12 139 12 148 7.28e-47 161
Msa0861490 AT2G36890.2 58.268 127 52 1 1 126 42 168 9.52e-47 160
Msa0861490 AT5G40330.1 58.621 116 48 0 1 116 1 116 1.11e-46 156
Msa0861490 AT5G65790.1 61.017 118 45 1 1 117 1 118 2.41e-46 160
Msa0861490 AT5G23000.1 58.475 118 48 1 1 117 1 118 3.97e-46 158
Msa0861490 AT5G14750.1 58.261 115 46 1 4 116 6 120 9.58e-46 154
Msa0861490 AT5G57620.1 60.169 118 46 1 1 117 1 118 2.37e-45 156
Msa0861490 AT5G06100.1 41.951 205 107 6 8 208 28 224 2.78e-45 159
Msa0861490 AT3G49690.1 60.169 118 46 1 1 117 1 118 3.44e-45 155
Msa0861490 AT5G12870.1 62.963 108 40 0 12 119 18 125 5.11e-45 154
Msa0861490 AT4G37780.1 56.780 118 50 1 1 117 1 118 8.62e-45 154
Msa0861490 AT3G24310.1 59.813 107 43 0 9 115 15 121 1.00e-44 153
Msa0861490 AT5G06100.5 41.951 205 107 6 8 208 28 224 1.27e-44 159
Msa0861490 AT5G06100.2 41.951 205 107 6 8 208 28 224 1.27e-44 159
Msa0861490 AT5G06100.3 41.951 205 107 6 8 208 28 224 1.27e-44 159
Msa0861490 AT5G06100.4 41.951 205 107 6 8 208 28 224 1.27e-44 159
Msa0861490 AT3G11440.2 61.321 106 41 0 10 115 39 144 1.30e-44 158
Msa0861490 AT1G79180.2 50.336 149 41 1 3 118 5 153 1.56e-44 154
Msa0861490 AT3G27810.1 59.091 110 45 0 9 118 17 126 5.18e-44 150
Msa0861490 AT3G11440.3 61.321 106 41 0 10 115 39 144 5.58e-44 157
Msa0861490 AT3G11440.4 61.321 106 41 0 10 115 39 144 5.58e-44 157
Msa0861490 AT3G11440.1 61.321 106 41 0 10 115 39 144 5.58e-44 157
Msa0861490 AT3G01530.1 58.716 109 45 0 8 116 21 129 5.81e-44 149
Msa0861490 AT2G32460.2 54.400 125 56 1 11 135 5 128 9.12e-44 155
Msa0861490 AT3G08500.1 61.818 110 42 0 7 116 25 134 1.05e-43 152
Msa0861490 AT5G40350.1 57.143 112 48 0 9 120 14 125 1.14e-43 149
Msa0861490 AT2G32460.1 54.400 125 56 1 11 135 17 140 1.15e-43 155
Msa0861490 AT3G30210.1 60.577 104 41 0 11 114 26 129 1.44e-43 150
Msa0861490 AT5G35550.1 61.062 113 44 0 4 116 6 118 1.84e-43 149
Msa0861490 AT3G27920.1 54.622 119 51 1 2 117 1 119 4.42e-43 147
Msa0861490 AT4G13480.1 57.944 107 45 0 9 115 3 109 2.02e-42 147
Msa0861490 AT5G55020.1 60.000 110 43 1 12 121 26 134 5.27e-42 152
Msa0861490 AT5G52600.1 57.944 107 45 0 9 115 9 115 7.28e-42 144
Msa0861490 AT2G26960.1 55.833 120 48 2 6 121 10 128 1.40e-41 149
Msa0861490 AT1G48000.1 51.128 133 63 1 12 142 32 164 1.51e-41 144
Msa0861490 AT4G26930.1 61.165 103 40 0 12 114 19 121 2.66e-41 147
Msa0861490 AT5G26660.2 59.649 114 45 1 45 157 14 127 3.16e-41 145
Msa0861490 AT2G47190.1 51.667 120 57 1 4 122 11 130 2.59e-40 142
Msa0861490 AT3G48920.1 58.824 102 42 0 13 114 19 120 2.82e-40 141
Msa0861490 AT1G25340.1 51.304 115 56 0 13 127 19 133 1.65e-39 140
Msa0861490 AT1G68320.1 54.054 111 51 0 12 122 19 129 1.66e-39 140
Msa0861490 AT5G52260.1 61.321 106 41 0 13 118 13 118 2.17e-39 139
Msa0861490 AT1G66370.1 57.143 105 45 0 11 115 7 111 6.97e-39 137
Msa0861490 AT4G25560.1 59.434 106 43 0 13 118 11 116 7.33e-39 138
Msa0861490 AT3G46130.1 52.727 110 52 0 9 118 6 115 7.60e-38 135
Msa0861490 AT3G06490.1 56.522 115 50 0 8 122 15 129 3.24e-37 135
Msa0861490 AT5G59780.3 52.830 106 50 0 13 118 9 114 3.95e-37 132
Msa0861490 AT1G66380.1 60.000 105 42 0 11 115 7 111 8.30e-37 128
Msa0861490 AT3G53200.1 56.075 107 47 0 9 115 6 112 1.56e-36 131
Msa0861490 AT5G49620.1 52.101 119 57 0 4 122 18 136 9.62e-36 130
Msa0861490 AT1G56650.1 59.048 105 43 0 11 115 7 111 2.61e-35 128
Msa0861490 AT1G25340.2 48.696 115 54 1 13 127 19 128 6.17e-35 128
Msa0861490 AT3G60460.1 50.000 114 56 1 2 114 1 114 9.93e-35 128
Msa0861490 AT1G66390.1 58.095 105 44 0 11 115 7 111 9.94e-35 126
Msa0861490 AT1G25340.3 48.696 115 54 1 13 127 19 128 1.14e-34 128
Msa0861490 AT2G26950.1 41.379 174 88 5 1 160 1 174 4.06e-34 128
Msa0861490 AT3G47600.2 68.000 75 24 0 45 119 39 113 2.30e-32 122
Msa0861490 AT5G49620.2 46.617 133 57 1 4 122 18 150 4.41e-32 121
Msa0861490 AT5G14750.3 62.821 78 26 1 39 116 12 86 6.65e-31 114
Msa0861490 AT1G18960.1 47.541 122 55 3 10 128 6 121 6.89e-31 118
Msa0861490 AT3G12820.2 69.014 71 22 0 48 118 2 72 1.08e-30 114
Msa0861490 AT5G35550.2 65.385 78 27 0 39 116 44 121 1.40e-30 116
Msa0861490 AT1G22640.3 54.945 91 41 0 59 149 2 92 5.58e-30 112
Msa0861490 AT3G27810.2 63.514 74 27 0 45 118 4 77 1.83e-29 110
Msa0861490 AT5G40350.2 61.842 76 29 0 45 120 5 80 2.90e-29 110
Msa0861490 AT4G37260.1 53.922 102 46 1 14 115 13 113 2.32e-28 111
Msa0861490 AT5G02320.1 52.830 106 47 2 12 116 125 228 2.76e-28 114
Msa0861490 AT5G02320.2 52.830 106 47 2 12 116 125 228 2.76e-28 114
Msa0861490 AT5G40360.1 37.500 160 86 4 1 160 145 290 2.81e-28 112
Msa0861490 AT5G02320.3 52.830 106 47 2 12 116 65 168 3.14e-28 113
Msa0861490 AT3G55730.1 50.909 110 45 2 14 119 56 160 3.52e-28 112
Msa0861490 AT2G23290.1 53.922 102 46 1 14 115 13 113 3.60e-28 110
Msa0861490 AT3G46130.3 60.000 75 30 0 44 118 9 83 3.73e-28 108
Msa0861490 AT5G59780.2 60.811 74 29 0 45 118 20 93 6.20e-28 107
Msa0861490 AT3G46130.4 60.811 74 29 0 45 118 20 93 8.18e-28 108
Msa0861490 AT3G53200.2 64.789 71 25 0 45 115 9 79 1.24e-27 107
Msa0861490 AT2G39880.1 50.943 106 43 2 14 115 50 150 1.61e-27 110
Msa0861490 AT4G18770.1 41.667 120 69 1 9 128 212 330 3.18e-27 110
Msa0861490 AT1G71030.1 51.111 90 43 1 38 127 7 95 4.23e-27 105
Msa0861490 AT3G27785.1 44.860 107 58 1 9 115 184 289 7.96e-27 109
Msa0861490 AT1G71030.2 54.545 77 35 0 51 127 5 81 8.30e-27 103
Msa0861490 AT3G09370.1 48.739 119 54 3 12 125 128 244 8.43e-27 109
Msa0861490 AT3G09370.2 48.739 119 54 3 12 125 133 249 8.52e-27 109
Msa0861490 AT3G09370.3 48.739 119 54 3 12 125 141 257 1.17e-26 109
Msa0861490 AT3G09230.1 47.222 108 48 2 14 117 55 157 1.71e-26 107
Msa0861490 AT3G50060.1 50.000 102 50 1 14 115 6 106 6.53e-26 104
Msa0861490 AT4G32730.1 48.113 106 52 2 12 116 85 188 8.91e-26 107
Msa0861490 AT4G32730.1 35.000 100 63 2 14 112 35 133 1.60e-14 74.3
Msa0861490 AT4G32730.5 48.113 106 52 2 12 116 85 188 9.07e-26 107
Msa0861490 AT4G32730.5 35.000 100 63 2 14 112 35 133 1.67e-14 74.3
Msa0861490 AT4G32730.4 48.113 106 52 2 12 116 85 188 9.07e-26 107
Msa0861490 AT4G32730.4 35.000 100 63 2 14 112 35 133 1.67e-14 74.3
Msa0861490 AT4G32730.3 48.113 106 52 2 12 116 85 188 9.07e-26 107
Msa0861490 AT4G32730.3 35.000 100 63 2 14 112 35 133 1.67e-14 74.3
Msa0861490 AT4G32730.2 48.113 106 52 2 12 116 85 188 9.07e-26 107
Msa0861490 AT4G32730.2 35.000 100 63 2 14 112 35 133 1.67e-14 74.3
Msa0861490 AT5G58850.1 46.667 105 53 2 12 115 103 205 9.65e-26 106
Msa0861490 AT5G11510.3 45.133 113 58 2 12 121 79 190 1.43e-25 107
Msa0861490 AT5G11510.3 31.000 100 67 2 14 112 29 127 6.22e-11 63.5
Msa0861490 AT5G11510.1 45.133 113 58 2 12 121 79 190 1.43e-25 107
Msa0861490 AT5G11510.1 31.000 100 67 2 14 112 29 127 6.22e-11 63.5
Msa0861490 AT5G11510.4 45.133 113 58 2 12 121 79 190 1.43e-25 107
Msa0861490 AT5G11510.4 31.000 100 67 2 14 112 29 127 6.22e-11 63.5
Msa0861490 AT5G11510.2 45.133 113 58 2 12 121 79 190 1.85e-25 106
Msa0861490 AT5G11510.2 31.000 100 67 2 14 112 29 127 5.75e-11 63.5
Msa0861490 AT5G11510.5 45.133 113 58 2 12 121 79 190 1.89e-25 106
Msa0861490 AT5G11510.5 31.000 100 67 2 14 112 29 127 5.69e-11 63.5
Msa0861490 AT5G67300.1 51.456 103 47 2 14 115 6 106 2.29e-25 103
Msa0861490 AT5G11050.1 45.631 103 53 2 14 115 105 205 2.71e-25 104
Msa0861490 AT1G66380.3 64.384 73 26 0 43 115 6 78 5.38e-25 97.1
Msa0861490 AT3G23250.2 70.690 58 17 0 59 116 2 59 3.13e-24 98.6
Msa0861490 AT1G17950.1 41.880 117 61 3 14 129 5 115 8.26e-23 95.1
Msa0861490 AT1G69560.1 42.342 111 61 2 9 118 102 210 1.09e-22 96.3
Msa0861490 AT1G69560.2 42.342 111 61 2 9 118 118 226 1.32e-22 96.3
Msa0861490 AT1G66380.2 48.980 98 49 1 11 107 7 104 1.38e-22 90.5
Msa0861490 AT5G14750.4 62.069 58 22 0 59 116 2 59 5.16e-22 90.1
Msa0861490 AT5G14750.2 62.069 58 22 0 59 116 2 59 5.16e-22 90.1
Msa0861490 AT1G26780.1 44.444 108 57 2 12 118 96 201 1.15e-21 92.8
Msa0861490 AT3G29020.1 39.200 125 69 2 14 132 65 188 1.22e-21 91.7
Msa0861490 AT1G26780.2 44.444 108 57 2 12 118 96 201 1.86e-21 93.2
Msa0861490 AT3G29020.2 39.200 125 69 2 14 132 67 190 7.64e-21 90.9
Msa0861490 AT1G73410.1 42.735 117 58 3 14 129 6 114 8.86e-21 89.4
Msa0861490 AT1G73410.2 44.340 106 56 2 14 118 6 109 2.06e-20 87.4
Msa0861490 AT4G33450.1 39.091 110 64 2 7 115 12 119 4.21e-20 87.8
Msa0861490 AT2G25230.1 39.496 119 67 3 9 124 21 137 6.14e-20 87.0
Msa0861490 AT5G61420.1 72.917 48 13 0 81 128 2 49 7.59e-20 87.8
Msa0861490 AT4G00540.2 42.857 112 58 3 12 119 101 210 2.15e-19 88.2
Msa0861490 AT5G17800.1 40.000 105 62 1 14 118 93 196 3.28e-19 86.7
Msa0861490 AT4G00540.1 42.857 112 58 3 12 119 99 208 3.45e-19 87.8
Msa0861490 AT5G15310.3 72.727 44 12 0 88 131 9 52 4.21e-18 82.0
Msa0861490 AT2G37630.1 38.614 101 60 1 17 115 7 107 6.26e-18 83.6
Msa0861490 AT1G14350.2 41.414 99 57 1 17 115 28 125 5.83e-17 81.3
Msa0861490 AT1G14350.1 41.414 99 57 1 17 115 28 125 5.83e-17 81.3
Msa0861490 AT2G02820.3 38.095 105 64 1 17 121 33 136 8.45e-17 79.7
Msa0861490 AT2G02820.1 40.404 99 58 1 17 115 33 130 1.38e-16 80.1
Msa0861490 AT2G02820.2 40.404 99 58 1 17 115 33 130 1.46e-16 80.1
Msa0861490 AT5G40430.1 35.294 102 64 1 9 110 49 148 4.40e-16 76.6
Msa0861490 AT4G28110.2 69.048 42 13 0 88 129 4 45 7.77e-16 75.1
Msa0861490 AT1G74650.3 69.767 43 13 0 77 119 1 43 1.35e-14 72.4
Msa0861490 AT4G25560.2 64.583 48 17 0 71 118 3 50 1.84e-14 71.6
Msa0861490 AT3G28910.2 63.043 46 17 0 77 122 1 46 5.44e-14 70.9
Msa0861490 AT1G22640.2 46.774 62 33 0 88 149 16 77 1.49e-13 68.2
Msa0861490 AT5G14340.2 61.364 44 17 0 88 131 10 53 2.98e-13 67.4
Msa0861490 AT5G59780.1 56.522 46 20 0 73 118 4 49 3.40e-13 67.0
Msa0861490 AT3G46130.2 56.522 46 20 0 73 118 4 49 4.59e-13 67.0
Msa0861490 AT5G39700.1 36.458 96 60 1 15 110 57 151 1.26e-12 65.9
Msa0861490 AT1G74430.2 51.852 54 26 0 77 130 8 61 1.89e-12 65.5

Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAATTTGGTGAACAAAT+TGG 0.188234 5_4:+60844688 Msa0861490:CDS
ATCAATTTACATTCAGTTCT+TGG 0.192562 5_4:+60843489 Msa0861490:CDS
TTTGAGTGCTCTCAGAAATT+TGG 0.230778 5_4:+60844676 Msa0861490:CDS
TTGAGAAGAAATACCAATAT+TGG 0.243128 5_4:-60844593 None:intergenic
ATGATGCAAATGATGCTTAT+TGG 0.261081 5_4:+60844887 Msa0861490:CDS
AAGTTTGGTAAATGATGTTT+TGG 0.283929 5_4:+60844534 Msa0861490:CDS
TTCACTTCTCCCACAAAGTT+TGG 0.285823 5_4:+60844519 Msa0861490:CDS
CTTCCAACAGCTTTGAAACT+TGG 0.298815 5_4:+60844848 Msa0861490:CDS
CTGTTCAATCCTGCAAGCTT+TGG 0.320153 5_4:-60843375 None:intergenic
TAAGATGGAATAATTATCTA+AGG 0.371636 5_4:+60843418 Msa0861490:CDS
GTTCTTGGCCTGTGTGTCAC+TGG 0.373245 5_4:-60844394 None:intergenic
AGAGCTCTTCCAAAGCTTGC+AGG 0.374930 5_4:+60843366 Msa0861490:CDS
ACATAAATAATAATGCTCTA+AGG 0.382840 5_4:+60844488 Msa0861490:CDS
ATCAAATTCACTTCCAAAGC+TGG 0.387270 5_4:+60844738 Msa0861490:CDS
TCAGTTTCACCTCAACGTTC+AGG 0.388670 5_4:+60844763 Msa0861490:CDS
ATTATTATTTATGTCACAAT+TGG 0.389221 5_4:-60844479 None:intergenic
GCTATAGCAACTCATCTTCC+AGG 0.393434 5_4:+60844298 Msa0861490:CDS
TTTGTTGTAGATTACTAAGA+AGG 0.414081 5_4:-60844429 None:intergenic
ATTTCATTATCAGTCCTTCC+TGG 0.418769 5_4:-60844316 None:intergenic
TTCCAACAGCTTTGAAACTT+GGG 0.419224 5_4:+60844849 Msa0861490:CDS
AAGCCACTTTCATCATTGCT+TGG 0.426214 5_4:-60843267 None:intergenic
AGAAGAAGATAAAATATTAG+TGG 0.429587 5_4:+60843311 Msa0861490:CDS
AGGTCTAGGTGATCTGTTCT+TGG 0.441362 5_4:-60844409 None:intergenic
TTATCTTCTTCTGGACTCCA+TGG 0.442300 5_4:-60843300 None:intergenic
ACATCATTTACCAAACTTTG+TGG 0.442943 5_4:-60844529 None:intergenic
TCCCCAAGTTTCAAAGCTGT+TGG 0.451141 5_4:-60844851 None:intergenic
GGTGAAACTGAAACCAGCTT+TGG 0.451442 5_4:-60844751 None:intergenic
CATCATTTACCAAACTTTGT+GGG 0.451886 5_4:-60844528 None:intergenic
AGAAACATGGTCATGGAAGT+TGG 0.468034 5_4:+60843343 Msa0861490:CDS
GAAAGAGTTGTAGACTAAGA+TGG 0.479581 5_4:+60843403 Msa0861490:CDS
TCAACGTTCAGGAACAGTTA+AGG 0.503558 5_4:+60844774 Msa0861490:CDS
GTAGATTACTAAGAAGGTCT+AGG 0.504439 5_4:-60844423 None:intergenic
TGATGAAAGTGGCTTGAAGA+AGG 0.511342 5_4:+60843275 Msa0861490:CDS
TCCAACAGCTTTGAAACTTG+GGG 0.538039 5_4:+60844850 Msa0861490:CDS
GTGGTAGTAATTGCTGAAGA+GGG 0.540930 5_4:-60844648 None:intergenic
TGTGGTAGTAATTGCTGAAG+AGG 0.554185 5_4:-60844649 None:intergenic
GATGAAAGTGGCTTGAAGAA+GGG 0.567181 5_4:+60843276 Msa0861490:CDS
GTGGCTTGAAGAAGGGTCCA+TGG 0.567632 5_4:+60843283 Msa0861490:CDS
ACACCAAGCAATGATGAAAG+TGG 0.569545 5_4:+60843264 Msa0861490:CDS
CTAAGGCCTGATATTAGAAG+AGG 0.576748 5_4:+60843435 Msa0861490:CDS
CACATTCAGAAACATGGTCA+TGG 0.577172 5_4:+60843336 Msa0861490:CDS
TGAGAGCACTCAAATTCTTG+TGG 0.582345 5_4:-60844667 None:intergenic
CTTGCAGGATTGAACAGATG+TGG 0.598027 5_4:+60843381 Msa0861490:CDS
TGGTAGTAATTGCTGAAGAG+GGG 0.633640 5_4:-60844647 None:intergenic
CGTTCAGGAACAGTTAAGGT+AGG 0.636839 5_4:+60844778 Msa0861490:CDS
GGTTAGATCCAGTGACACAC+AGG 0.640850 5_4:+60844386 Msa0861490:CDS
TAGCAACTCATCTTCCAGGA+AGG 0.644421 5_4:+60844302 Msa0861490:CDS
TTAACTGTTCCTGAACGTTG+AGG 0.645603 5_4:-60844772 None:intergenic
GTGGATCACATTCAGAAACA+TGG 0.652058 5_4:+60843330 Msa0861490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAATTATTTTTTTTTTTG+AGG - chr5_4:60843615-60843634 None:intergenic 10.0%
!!! AAAAAAAATAGTTTTAATTG+TGG - chr5_4:60843724-60843743 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG + chr5_4:60844329-60844348 Msa0861490:CDS 10.0%
!!! CTAAATTATTTTTTTTTTTG+AGG - chr5_4:60843615-60843634 None:intergenic 10.0%
!!! AAAAAAAATAGTTTTAATTG+TGG - chr5_4:60843724-60843743 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG + chr5_4:60844329-60844348 Msa0861490:CDS 10.0%
!! TAAATATTCAGCTATAAATA+AGG + chr5_4:60843744-60843763 Msa0861490:intron 15.0%
!! AAATATTCAGCTATAAATAA+GGG + chr5_4:60843745-60843764 Msa0861490:intron 15.0%
!! TTCATATTTCTTTAATAATC+CGG - chr5_4:60843875-60843894 None:intergenic 15.0%
!! TTATAATATGCAATAACAAA+TGG + chr5_4:60844071-60844090 Msa0861490:intron 15.0%
!! ATTATTATTTATGTCACAAT+TGG - chr5_4:60844482-60844501 None:intergenic 15.0%
!! TAAATATTCAGCTATAAATA+AGG + chr5_4:60843744-60843763 Msa0861490:intron 15.0%
!! AAATATTCAGCTATAAATAA+GGG + chr5_4:60843745-60843764 Msa0861490:intron 15.0%
!! TTCATATTTCTTTAATAATC+CGG - chr5_4:60843875-60843894 None:intergenic 15.0%
!! TTATAATATGCAATAACAAA+TGG + chr5_4:60844071-60844090 Msa0861490:intron 15.0%
!! ATTATTATTTATGTCACAAT+TGG - chr5_4:60844482-60844501 None:intergenic 15.0%
!!! ACTAATATTTTATCTTCTTC+TGG - chr5_4:60843312-60843331 None:intergenic 20.0%
!! AGAAGAAGATAAAATATTAG+TGG + chr5_4:60843311-60843330 Msa0861490:CDS 20.0%
!! TAAGATGGAATAATTATCTA+AGG + chr5_4:60843418-60843437 Msa0861490:CDS 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG + chr5_4:60843527-60843546 Msa0861490:intron 20.0%
!!! TTTTTTGTCAAATAATCTAG+TGG - chr5_4:60844173-60844192 None:intergenic 20.0%
!!! ATGAATATGGTTGATTTATT+AGG + chr5_4:60844269-60844288 Msa0861490:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG + chr5_4:60844488-60844507 Msa0861490:CDS 20.0%
!!! AACATACAAAGTTTTTATGA+TGG + chr5_4:60844568-60844587 Msa0861490:CDS 20.0%
!!! ACTAATATTTTATCTTCTTC+TGG - chr5_4:60843312-60843331 None:intergenic 20.0%
!! AGAAGAAGATAAAATATTAG+TGG + chr5_4:60843311-60843330 Msa0861490:CDS 20.0%
!! TAAGATGGAATAATTATCTA+AGG + chr5_4:60843418-60843437 Msa0861490:CDS 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG + chr5_4:60843527-60843546 Msa0861490:intron 20.0%
!!! TTTTTTGTCAAATAATCTAG+TGG - chr5_4:60844173-60844192 None:intergenic 20.0%
!!! ATGAATATGGTTGATTTATT+AGG + chr5_4:60844269-60844288 Msa0861490:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG + chr5_4:60844488-60844507 Msa0861490:CDS 20.0%
!!! AACATACAAAGTTTTTATGA+TGG + chr5_4:60844568-60844587 Msa0861490:CDS 20.0%
!! AATTTTCCTCTTCTAATATC+AGG - chr5_4:60843444-60843463 None:intergenic 25.0%
! ATCAATTTACATTCAGTTCT+TGG + chr5_4:60843489-60843508 Msa0861490:CDS 25.0%
!! TACTTTTGAATGTTCTTATC+CGG + chr5_4:60843853-60843872 Msa0861490:intron 25.0%
!! AATATGGTTGATTTATTAGG+TGG + chr5_4:60844272-60844291 Msa0861490:intron 25.0%
!! ATATGGTTGATTTATTAGGT+GGG + chr5_4:60844273-60844292 Msa0861490:intron 25.0%
! AAGAAAAAGCTAATGCAAAT+GGG + chr5_4:60844364-60844383 Msa0861490:CDS 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG - chr5_4:60844432-60844451 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG + chr5_4:60844534-60844553 Msa0861490:CDS 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG + chr5_4:60844535-60844554 Msa0861490:CDS 25.0%
!! TTTTATGATGGTTCCAATAT+TGG + chr5_4:60844580-60844599 Msa0861490:CDS 25.0%
! TTGAGAAGAAATACCAATAT+TGG - chr5_4:60844596-60844615 None:intergenic 25.0%
!! AATTTTCCTCTTCTAATATC+AGG - chr5_4:60843444-60843463 None:intergenic 25.0%
! ATCAATTTACATTCAGTTCT+TGG + chr5_4:60843489-60843508 Msa0861490:CDS 25.0%
!! TACTTTTGAATGTTCTTATC+CGG + chr5_4:60843853-60843872 Msa0861490:intron 25.0%
!! AATATGGTTGATTTATTAGG+TGG + chr5_4:60844272-60844291 Msa0861490:intron 25.0%
!! ATATGGTTGATTTATTAGGT+GGG + chr5_4:60844273-60844292 Msa0861490:intron 25.0%
! AAGAAAAAGCTAATGCAAAT+GGG + chr5_4:60844364-60844383 Msa0861490:CDS 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG - chr5_4:60844432-60844451 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG + chr5_4:60844534-60844553 Msa0861490:CDS 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG + chr5_4:60844535-60844554 Msa0861490:CDS 25.0%
!! TTTTATGATGGTTCCAATAT+TGG + chr5_4:60844580-60844599 Msa0861490:CDS 25.0%
! TTGAGAAGAAATACCAATAT+TGG - chr5_4:60844596-60844615 None:intergenic 25.0%
!! ACATTTTAAGTGTGAAGAAG+TGG - chr5_4:60844140-60844159 None:intergenic 30.0%
CGTGATTGTGAATATGAATA+TGG + chr5_4:60844256-60844275 Msa0861490:intron 30.0%
GAAGAAAAAGCTAATGCAAA+TGG + chr5_4:60844363-60844382 Msa0861490:CDS 30.0%
AGAAAAAGCTAATGCAAATG+GGG + chr5_4:60844365-60844384 Msa0861490:CDS 30.0%
CATCATTTACCAAACTTTGT+GGG - chr5_4:60844531-60844550 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG - chr5_4:60844532-60844551 None:intergenic 30.0%
! GCTTCAAAGTTTTGCAAATT+AGG - chr5_4:60844628-60844647 None:intergenic 30.0%
! CAGAAATTTGGTGAACAAAT+TGG + chr5_4:60844688-60844707 Msa0861490:CDS 30.0%
ATGATGCAAATGATGCTTAT+TGG + chr5_4:60844887-60844906 Msa0861490:CDS 30.0%
!! ACATTTTAAGTGTGAAGAAG+TGG - chr5_4:60844140-60844159 None:intergenic 30.0%
CGTGATTGTGAATATGAATA+TGG + chr5_4:60844256-60844275 Msa0861490:intron 30.0%
GAAGAAAAAGCTAATGCAAA+TGG + chr5_4:60844363-60844382 Msa0861490:CDS 30.0%
AGAAAAAGCTAATGCAAATG+GGG + chr5_4:60844365-60844384 Msa0861490:CDS 30.0%
CATCATTTACCAAACTTTGT+GGG - chr5_4:60844531-60844550 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG - chr5_4:60844532-60844551 None:intergenic 30.0%
! GCTTCAAAGTTTTGCAAATT+AGG - chr5_4:60844628-60844647 None:intergenic 30.0%
! CAGAAATTTGGTGAACAAAT+TGG + chr5_4:60844688-60844707 Msa0861490:CDS 30.0%
ATGATGCAAATGATGCTTAT+TGG + chr5_4:60844887-60844906 Msa0861490:CDS 30.0%
GAAAGAGTTGTAGACTAAGA+TGG + chr5_4:60843403-60843422 Msa0861490:CDS 35.0%
ATTTCATTATCAGTCCTTCC+TGG - chr5_4:60844319-60844338 None:intergenic 35.0%
GTAGATTACTAAGAAGGTCT+AGG - chr5_4:60844426-60844445 None:intergenic 35.0%
TTTGAGTGCTCTCAGAAATT+TGG + chr5_4:60844676-60844695 Msa0861490:CDS 35.0%
ATCAAATTCACTTCCAAAGC+TGG + chr5_4:60844738-60844757 Msa0861490:CDS 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG + chr5_4:60844849-60844868 Msa0861490:CDS 35.0%
GAAAGAGTTGTAGACTAAGA+TGG + chr5_4:60843403-60843422 Msa0861490:CDS 35.0%
ATTTCATTATCAGTCCTTCC+TGG - chr5_4:60844319-60844338 None:intergenic 35.0%
GTAGATTACTAAGAAGGTCT+AGG - chr5_4:60844426-60844445 None:intergenic 35.0%
TTTGAGTGCTCTCAGAAATT+TGG + chr5_4:60844676-60844695 Msa0861490:CDS 35.0%
ATCAAATTCACTTCCAAAGC+TGG + chr5_4:60844738-60844757 Msa0861490:CDS 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG + chr5_4:60844849-60844868 Msa0861490:CDS 35.0%
ACACCAAGCAATGATGAAAG+TGG + chr5_4:60843264-60843283 Msa0861490:CDS 40.0%
! AAGCCACTTTCATCATTGCT+TGG - chr5_4:60843270-60843289 None:intergenic 40.0%
TGATGAAAGTGGCTTGAAGA+AGG + chr5_4:60843275-60843294 Msa0861490:CDS 40.0%
GATGAAAGTGGCTTGAAGAA+GGG + chr5_4:60843276-60843295 Msa0861490:CDS 40.0%
TTATCTTCTTCTGGACTCCA+TGG - chr5_4:60843303-60843322 None:intergenic 40.0%
GTGGATCACATTCAGAAACA+TGG + chr5_4:60843330-60843349 Msa0861490:CDS 40.0%
CACATTCAGAAACATGGTCA+TGG + chr5_4:60843336-60843355 Msa0861490:CDS 40.0%
AGAAACATGGTCATGGAAGT+TGG + chr5_4:60843343-60843362 Msa0861490:CDS 40.0%
CTAAGGCCTGATATTAGAAG+AGG + chr5_4:60843435-60843454 Msa0861490:CDS 40.0%
! CTGCGTTCGAACATAGTTTT+AGG - chr5_4:60844099-60844118 None:intergenic 40.0%
CTAAAACTATGTTCGAACGC+AGG + chr5_4:60844097-60844116 Msa0861490:intron 40.0%
TTCACTTCTCCCACAAAGTT+TGG + chr5_4:60844519-60844538 Msa0861490:CDS 40.0%
TGGTAGTAATTGCTGAAGAG+GGG - chr5_4:60844650-60844669 None:intergenic 40.0%
GTGGTAGTAATTGCTGAAGA+GGG - chr5_4:60844651-60844670 None:intergenic 40.0%
TGTGGTAGTAATTGCTGAAG+AGG - chr5_4:60844652-60844671 None:intergenic 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG - chr5_4:60844670-60844689 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG - chr5_4:60844775-60844794 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG + chr5_4:60844774-60844793 Msa0861490:CDS 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG + chr5_4:60844848-60844867 Msa0861490:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG + chr5_4:60844850-60844869 Msa0861490:CDS 40.0%
ACACCAAGCAATGATGAAAG+TGG + chr5_4:60843264-60843283 Msa0861490:CDS 40.0%
! AAGCCACTTTCATCATTGCT+TGG - chr5_4:60843270-60843289 None:intergenic 40.0%
TGATGAAAGTGGCTTGAAGA+AGG + chr5_4:60843275-60843294 Msa0861490:CDS 40.0%
GATGAAAGTGGCTTGAAGAA+GGG + chr5_4:60843276-60843295 Msa0861490:CDS 40.0%
TTATCTTCTTCTGGACTCCA+TGG - chr5_4:60843303-60843322 None:intergenic 40.0%
GTGGATCACATTCAGAAACA+TGG + chr5_4:60843330-60843349 Msa0861490:CDS 40.0%
CACATTCAGAAACATGGTCA+TGG + chr5_4:60843336-60843355 Msa0861490:CDS 40.0%
AGAAACATGGTCATGGAAGT+TGG + chr5_4:60843343-60843362 Msa0861490:CDS 40.0%
CTAAGGCCTGATATTAGAAG+AGG + chr5_4:60843435-60843454 Msa0861490:CDS 40.0%
! CTGCGTTCGAACATAGTTTT+AGG - chr5_4:60844099-60844118 None:intergenic 40.0%
CTAAAACTATGTTCGAACGC+AGG + chr5_4:60844097-60844116 Msa0861490:intron 40.0%
TTCACTTCTCCCACAAAGTT+TGG + chr5_4:60844519-60844538 Msa0861490:CDS 40.0%
TGGTAGTAATTGCTGAAGAG+GGG - chr5_4:60844650-60844669 None:intergenic 40.0%
GTGGTAGTAATTGCTGAAGA+GGG - chr5_4:60844651-60844670 None:intergenic 40.0%
TGTGGTAGTAATTGCTGAAG+AGG - chr5_4:60844652-60844671 None:intergenic 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG - chr5_4:60844670-60844689 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG - chr5_4:60844775-60844794 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG + chr5_4:60844774-60844793 Msa0861490:CDS 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG + chr5_4:60844848-60844867 Msa0861490:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG + chr5_4:60844850-60844869 Msa0861490:CDS 40.0%
CTGTTCAATCCTGCAAGCTT+TGG - chr5_4:60843378-60843397 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG + chr5_4:60843381-60843400 Msa0861490:CDS 45.0%
GCTATAGCAACTCATCTTCC+AGG + chr5_4:60844298-60844317 Msa0861490:CDS 45.0%
TAGCAACTCATCTTCCAGGA+AGG + chr5_4:60844302-60844321 Msa0861490:CDS 45.0%
AGGTCTAGGTGATCTGTTCT+TGG - chr5_4:60844412-60844431 None:intergenic 45.0%
GGTGAAACTGAAACCAGCTT+TGG - chr5_4:60844754-60844773 None:intergenic 45.0%
TCAGTTTCACCTCAACGTTC+AGG + chr5_4:60844763-60844782 Msa0861490:CDS 45.0%
CGTTCAGGAACAGTTAAGGT+AGG + chr5_4:60844778-60844797 Msa0861490:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG - chr5_4:60844854-60844873 None:intergenic 45.0%
CTGTTCAATCCTGCAAGCTT+TGG - chr5_4:60843378-60843397 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG + chr5_4:60843381-60843400 Msa0861490:CDS 45.0%
GCTATAGCAACTCATCTTCC+AGG + chr5_4:60844298-60844317 Msa0861490:CDS 45.0%
TAGCAACTCATCTTCCAGGA+AGG + chr5_4:60844302-60844321 Msa0861490:CDS 45.0%
AGGTCTAGGTGATCTGTTCT+TGG - chr5_4:60844412-60844431 None:intergenic 45.0%
GGTGAAACTGAAACCAGCTT+TGG - chr5_4:60844754-60844773 None:intergenic 45.0%
TCAGTTTCACCTCAACGTTC+AGG + chr5_4:60844763-60844782 Msa0861490:CDS 45.0%
CGTTCAGGAACAGTTAAGGT+AGG + chr5_4:60844778-60844797 Msa0861490:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG - chr5_4:60844854-60844873 None:intergenic 45.0%
!! CAAAAAATAAATAAATTAAT+AGG + chr5_4:60844186-60844205 Msa0861490:intron 5.0%
!! CAAAAAATAAATAAATTAAT+AGG + chr5_4:60844186-60844205 Msa0861490:intron 5.0%
AGAGCTCTTCCAAAGCTTGC+AGG + chr5_4:60843366-60843385 Msa0861490:CDS 50.0%
GGTTAGATCCAGTGACACAC+AGG + chr5_4:60844386-60844405 Msa0861490:CDS 50.0%
AGAGCTCTTCCAAAGCTTGC+AGG + chr5_4:60843366-60843385 Msa0861490:CDS 50.0%
GGTTAGATCCAGTGACACAC+AGG + chr5_4:60844386-60844405 Msa0861490:CDS 50.0%
GTGGCTTGAAGAAGGGTCCA+TGG + chr5_4:60843283-60843302 Msa0861490:CDS 55.0%
GTTCTTGGCCTGTGTGTCAC+TGG - chr5_4:60844397-60844416 None:intergenic 55.0%
GTGGCTTGAAGAAGGGTCCA+TGG + chr5_4:60843283-60843302 Msa0861490:CDS 55.0%
GTTCTTGGCCTGTGTGTCAC+TGG - chr5_4:60844397-60844416 None:intergenic 55.0%
CGAACGCAGGTTCGAACACG+TGG + chr5_4:60844110-60844129 Msa0861490:intron 60.0%
CGAACGCAGGTTCGAACACG+TGG + chr5_4:60844110-60844129 Msa0861490:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60843255 60844927 60843255 ID=Msa0861490;Name=Msa0861490
chr5_4 mRNA 60843255 60844927 60843255 ID=Msa0861490-mRNA-1;Parent=Msa0861490;Name=Msa0861490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|299
chr5_4 exon 60843255 60843517 60843255 ID=Msa0861490-mRNA-1:exon:18758;Parent=Msa0861490-mRNA-1
chr5_4 exon 60844291 60844927 60844291 ID=Msa0861490-mRNA-1:exon:18759;Parent=Msa0861490-mRNA-1
chr5_4 CDS 60843255 60843517 60843255 ID=Msa0861490-mRNA-1:cds;Parent=Msa0861490-mRNA-1
chr5_4 CDS 60844291 60844927 60844291 ID=Msa0861490-mRNA-1:cds;Parent=Msa0861490-mRNA-1
Gene Sequence

>Msa0861490

ATGATGAGAACACCAAGCAATGATGAAAGTGGCTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAACTCATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAACAAATAATATTGAATGCTGCAAACATTGTCACCAATTGTGACATAAATAATAATGCTCTAAGGCTACAATATTCACTTCTCCCACAAAGTTTGGTAAATGATGTTTTGGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAGCCTAATTTGCAAAACTTTGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAATATCATCAAATTCACTTCCAAAGCTGGTTTCAGTTTCACCTCAACGTTCAGGAACAGTTAAGGTAGGAGAAGAAAACATGATGATAGATGCAAAAGAGTGTTGTAACACTTCTTCTTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAGTAA
Protein sequence

>Msa0861490

MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTNCDINNNALRLQYSLLPQSLVNDVLGFNNNIQSFYDGSNIGISSQTIQPNLQNFEAPLQQLLPQEFECSQKFGEQIGNTNFASTISSNSLPKLVSVSPQRSGTVKVGEENMMIDAKECCNTSSSNSFETWGDFINDDANDAYWKDFIE*