AlfalfaGEDB | Msa1071300

M. sativa cultivar zhongmu-4 / Msa1071300

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071300	XP_003610818.3	98.662	299	4	0	1	299	1	299	0.0	614

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071300	sp\|Q9SBF3\|MYB92_ARATH	50.362	276	106	6	1	249	1	272	9.20e-81	250

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071300	A0A396HJ86	98.662	299	4	0	1	299	1	299	0.0	614

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TFs/TRs:

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Gene ID	Type	Classification
Msa1071300	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0861490	Msa1071300	0.906522	1.356351e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071300	MtrunA17_Chr5g0395281	98.662	299	4	0	1	299	1	299	0.0	614
Msa1071300	MtrunA17_Chr4g0039971	51.429	350	114	11	1	299	2	346	4.84e-109	320
Msa1071300	MtrunA17_Chr5g0395231	60.976	246	70	6	78	299	5	248	5.02e-93	276
Msa1071300	MtrunA17_Chr3g0115821	76.510	149	29	1	1	143	1	149	2.57e-82	252
Msa1071300	MtrunA17_Chr5g0410961	42.105	342	147	10	1	299	1	334	2.05e-73	229
Msa1071300	MtrunA17_Chr6g0453471	51.174	213	83	3	1	192	1	213	9.48e-69	217
Msa1071300	MtrunA17_Chr2g0323411	67.347	147	46	1	1	147	1	145	5.45e-68	214
Msa1071300	MtrunA17_Chr4g0048511	68.571	140	43	1	1	139	1	140	6.23e-68	215
Msa1071300	MtrunA17_Chr2g0281071	71.538	130	36	1	1	129	1	130	1.28e-67	214
Msa1071300	MtrunA17_Chr7g0217741	66.917	133	44	0	1	133	1	133	1.88e-65	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071300	AT5G16770.4	50.150	333	124	10	1	299	1	325	1.86e-93	280
Msa1071300	AT5G16770.3	50.150	333	124	10	1	299	1	325	1.86e-93	280
Msa1071300	AT5G16770.1	50.150	333	124	10	1	299	1	325	3.32e-93	280
Msa1071300	AT5G16770.2	50.150	333	124	10	1	299	1	325	3.32e-93	280
Msa1071300	AT3G02940.2	49.057	318	135	8	1	299	1	310	5.34e-90	270
Msa1071300	AT3G02940.1	49.057	318	135	8	1	299	1	310	1.61e-89	270
Msa1071300	AT3G02940.3	49.057	318	135	8	1	299	1	310	1.61e-89	270
Msa1071300	AT5G10280.1	50.362	276	106	6	1	249	1	272	9.35e-82	250
Msa1071300	AT1G34670.1	76.923	143	30	1	1	143	1	140	5.70e-78	241
Msa1071300	AT5G65230.1	79.389	131	27	0	1	131	1	131	2.06e-76	236

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Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCACTTTCATCATTGCT+TGG	0.426214	7_2:+67771032	None:intergenic
AAGTTTGGTAAATGATGTTT+TGG	0.283929	7_2:-67769765	Msa1071300:CDS
ACACCAAGCAATGATGAAAG+TGG	0.569545	7_2:-67771035	Msa1071300:CDS
ACATAAATAATAATGCTCTA+AGG	0.382840	7_2:-67769811	Msa1071300:CDS
ACATCATTTACCAAACTTTG+TGG	0.442943	7_2:+67769770	None:intergenic
AGAAACATGGTCATGGAAGT+TGG	0.468034	7_2:-67770956	Msa1071300:CDS
AGAAGAAGATAAAATATTAG+TGG	0.429587	7_2:-67770988	Msa1071300:CDS
AGAGCTCTTCCAAAGCTTGC+AGG	0.374930	7_2:-67770933	Msa1071300:CDS
AGGTCTAGGTGATCTGTTCT+TGG	0.441362	7_2:+67769890	None:intergenic
ATCAAATTCACTTCCAAAGC+TGG	0.387270	7_2:-67769561	Msa1071300:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTGATTGTGAATATGAATA+TGG	-	chr7_2:67770395-67770414	Msa1071300:intron	30.0%
GAAGAAAAAGCTAATGCAAA+TGG	-	chr7_2:67770502-67770521	Msa1071300:intron	30.0%
AGAAAAAGCTAATGCAAATG+GGG	-	chr7_2:67770504-67770523	Msa1071300:intron	30.0%
CATCATTTACCAAACTTTGT+GGG	+	chr7_2:67770670-67770689	None:intergenic	30.0%
ACATCATTTACCAAACTTTG+TGG	+	chr7_2:67770671-67770690	None:intergenic	30.0%
ATGATGCAAATGATGCTTAT+TGG	-	chr7_2:67771026-67771045	Msa1071300:CDS	30.0%
CGTGATTGTGAATATGAATA+TGG	-	chr7_2:67770395-67770414	Msa1071300:intron	30.0%
GAAGAAAAAGCTAATGCAAA+TGG	-	chr7_2:67770502-67770521	Msa1071300:intron	30.0%
AGAAAAAGCTAATGCAAATG+GGG	-	chr7_2:67770504-67770523	Msa1071300:intron	30.0%
CATCATTTACCAAACTTTGT+GGG	+	chr7_2:67770670-67770689	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	67769394	67771066	67769394	ID=Msa1071300;Name=Msa1071300
chr7_2	mRNA	67769394	67771066	67769394	ID=Msa1071300-mRNA-1;Parent=Msa1071300;Name=Msa1071300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|299
chr7_2	exon	67770804	67771066	67770804	ID=Msa1071300-mRNA-1:exon:14711;Parent=Msa1071300-mRNA-1
chr7_2	exon	67769394	67770030	67769394	ID=Msa1071300-mRNA-1:exon:14710;Parent=Msa1071300-mRNA-1
chr7_2	CDS	67770804	67771066	67770804	ID=Msa1071300-mRNA-1:cds;Parent=Msa1071300-mRNA-1
chr7_2	CDS	67769394	67770030	67769394	ID=Msa1071300-mRNA-1:cds;Parent=Msa1071300-mRNA-1

Gene Sequence

>Msa1071300

ATGATGAGAACACCAAGCAATGATGAAAGTGGCTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAACTCATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAACAAATAATATTGAATGCTGCAAACATTGTCACCAATTGTGACATAAATAATAATGCTCTAAGGCTACAATATTCACTTCTCCCACAAAGTTTGGTAAATGATGTTTTGGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAGCCTAATTTGCAAAACTTTGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAATATCATCAAATTCACTTCCAAAGCTGGTTTCAGTTTCACCTCAACGTTCAGGAACAGTTAAGGTAGGAGAAGAAAACATGATGATAGATGCAAAAGAGTGTTGTAACACTTCTTCTTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAGTAA

Protein sequence

>Msa1071300

MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTNCDINNNALRLQYSLLPQSLVNDVLGFNNNIQSFYDGSNIGISSQTIQPNLQNFEAPLQQLLPQEFECSQKFGEQIGNTNFASTISSNSLPKLVSVSPQRSGTVKVGEENMMIDAKECCNTSSSNSFETWGDFINDDANDAYWKDFIE*