Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861880 | XP_003617304.2 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861880 | sp|Q54PM7|NAGK_DICDI | 35.843 | 332 | 187 | 7 | 34 | 355 | 1 | 316 | 1.33e-58 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861880 | A0A396HWA9 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741250 | Msa0861880 | 0.963884 | 1.235249e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861880 | MtrunA17_Chr5g0442201 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861880 | AT1G30540.1 | 72.050 | 322 | 89 | 1 | 36 | 357 | 29 | 349 | 1.62e-170 | 479 |
| Msa0861880 | AT1G30540.2 | 73.897 | 272 | 71 | 0 | 86 | 357 | 7 | 278 | 1.07e-147 | 419 |
| Msa0861880 | AT1G30540.3 | 73.897 | 272 | 71 | 0 | 86 | 357 | 7 | 278 | 1.07e-147 | 419 |
| Msa0861880 | AT1G30540.4 | 72.453 | 265 | 72 | 1 | 36 | 300 | 29 | 292 | 6.49e-139 | 397 |
Find 118 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCGTCAGCATTGTATT+TGG | 0.215745 | 5_4:+61368663 | None:intergenic |
| TTTAATATTTGCAGTGGATA+TGG | 0.250578 | 5_4:-61368738 | Msa0861880:intron |
| AAGCACCCCAGGAAAGTATT+TGG | 0.301399 | 5_4:+61367639 | None:intergenic |
| TGCATTTCCAAATACTTTCC+TGG | 0.311592 | 5_4:-61367646 | Msa0861880:CDS |
| TATACTGACCTTAGGTCTAA+TGG | 0.311823 | 5_4:+61367615 | None:intergenic |
| AATCTCTTCCTATTCTTTCA+AGG | 0.314650 | 5_4:-61371563 | Msa0861880:CDS |
| ATTCTTTCAAGGGCTGTTGC+TGG | 0.326969 | 5_4:-61371552 | Msa0861880:CDS |
| GCTAAAATCGGCGCAAGAAT+TGG | 0.333697 | 5_4:-61368363 | Msa0861880:CDS |
| TTCTTCTGAGAGATAAAGAT+TGG | 0.354119 | 5_4:+61371929 | None:intergenic |
| GAAGCAAGGGCTGCAGGCGC+AGG | 0.355339 | 5_4:-61369735 | Msa0861880:CDS |
| TTTACTTTACAGCCAAGAAT+TGG | 0.355476 | 5_4:+61367288 | None:intergenic |
| TGCTAATAAAATATAAACTT+TGG | 0.357610 | 5_4:+61367237 | None:intergenic |
| GCAGGCGCAGGACCTGTCTT+AGG | 0.366536 | 5_4:-61369723 | Msa0861880:CDS |
| ATCGTCACATAAATTACTAT+TGG | 0.367997 | 5_4:-61367055 | Msa0861880:three_prime_UTR |
| TTGGATGTACATAAACTATA+TGG | 0.379029 | 5_4:+61367256 | None:intergenic |
| GCATATGGATTTACTGAAGA+TGG | 0.381525 | 5_4:-61369762 | Msa0861880:CDS |
| TCTTCTGCAGAAGAATTGAT+TGG | 0.381604 | 5_4:-61368618 | Msa0861880:CDS |
| TCAAGTGTTAAAGCTGTTGT+AGG | 0.385362 | 5_4:-61368338 | Msa0861880:CDS |
| CAGGACCTGTCTTAGGTGAC+TGG | 0.387073 | 5_4:-61369716 | Msa0861880:CDS |
| GGAGCAATTGATTCTTGATT+CGG | 0.389234 | 5_4:-61371745 | Msa0861880:CDS |
| GGAACAATTGGCAAACTTCA+TGG | 0.391537 | 5_4:-61369816 | Msa0861880:CDS |
| ATACTGACCTTAGGTCTAAT+GGG | 0.413875 | 5_4:+61367616 | None:intergenic |
| AGAATTCTTTGTTGATCTGT+TGG | 0.418135 | 5_4:+61370101 | None:intergenic |
| AAAGAATTCTCAGTTGGCTT+AGG | 0.420781 | 5_4:-61370088 | Msa0861880:intron |
| AAATAAGATCTTGCTAAAAT+CGG | 0.422645 | 5_4:-61368375 | Msa0861880:CDS |
| TTCGGTCCGAGCTGTATGTT+TGG | 0.427209 | 5_4:-61370144 | Msa0861880:CDS |
| CCACACTTTACTCTCATAAG+AGG | 0.440062 | 5_4:+61366986 | None:intergenic |
| ATCTCTTCCTATTCTTTCAA+GGG | 0.442969 | 5_4:-61371562 | Msa0861880:CDS |
| GCATTTCCAAATACTTTCCT+GGG | 0.443620 | 5_4:-61367645 | Msa0861880:CDS |
| ATTCGGAGATGAAGAGGTAT+AGG | 0.444303 | 5_4:-61371728 | Msa0861880:CDS |
| CATGGATGTGTATTAATTGC+TGG | 0.450862 | 5_4:-61369798 | Msa0861880:CDS |
| GCTCTTGCAAGTGGAACAAT+TGG | 0.455844 | 5_4:-61369828 | Msa0861880:CDS |
| TTCTACAGAAATTGCTGCAA+GGG | 0.456074 | 5_4:-61370222 | Msa0861880:intron |
| TGGAACGAGTGCTGCAATGC+GGG | 0.460985 | 5_4:+61368436 | None:intergenic |
| GCAAACACAAAGTGGGATGT+AGG | 0.461172 | 5_4:-61367685 | Msa0861880:CDS |
| TTGGAGCAGCATGGTTAGCT+TGG | 0.461737 | 5_4:-61367418 | Msa0861880:CDS |
| GGACTTACGCAGATCCATCT+TGG | 0.461737 | 5_4:-61368460 | Msa0861880:CDS |
| CTGTCTTAGGTGACTGGGGC+AGG | 0.466961 | 5_4:-61369710 | Msa0861880:intron |
| AGACTTGGATTGTGCGGTAA+AGG | 0.467200 | 5_4:-61368314 | Msa0861880:intron |
| TTAGCAAATGGTACATTGGT+AGG | 0.467427 | 5_4:-61367220 | Msa0861880:three_prime_UTR |
| GACTTACGCAGATCCATCTT+GGG | 0.471146 | 5_4:-61368459 | Msa0861880:CDS |
| GGCACAGGAACCATTGCATA+TGG | 0.473099 | 5_4:-61369777 | Msa0861880:CDS |
| CTTCTGCAGAAGAATTGATT+GGG | 0.475265 | 5_4:-61368617 | Msa0861880:intron |
| TCTAATCATAATAGTGTTGG+AGG | 0.480939 | 5_4:-61371525 | Msa0861880:intron |
| GGTCTAATGGGAAGCACCCC+AGG | 0.482189 | 5_4:+61367628 | None:intergenic |
| GGAAAAGAAGCAAGGGCTGC+AGG | 0.483573 | 5_4:-61369741 | Msa0861880:CDS |
| GCTGTATGTTTGGCTGTATC+CGG | 0.484239 | 5_4:-61370134 | Msa0861880:CDS |
| TTTCCGCTTGTCATGGTTGG+TGG | 0.487092 | 5_4:-61367718 | Msa0861880:CDS |
| GCAACAGCCCTTGAAAGAAT+AGG | 0.488351 | 5_4:+61371555 | None:intergenic |
| AAAGCTGTTGTAGGGAGACT+TGG | 0.491123 | 5_4:-61368329 | Msa0861880:CDS |
| AGAATCAATTGCTCCTTCTC+CGG | 0.496172 | 5_4:+61371753 | None:intergenic |
| ACATATAACCTCACATCACT+TGG | 0.500294 | 5_4:+61369870 | None:intergenic |
| TCTGCACAAGATACTACAAC+TGG | 0.500794 | 5_4:+61368416 | None:intergenic |
| AGGACCTGTCTTAGGTGACT+GGG | 0.506306 | 5_4:-61369715 | Msa0861880:CDS |
| CAATGTTGACGGAGAAGAAA+GGG | 0.507872 | 5_4:+61371815 | None:intergenic |
| GTGCCTCACTTAGCAAGGAC+AGG | 0.508933 | 5_4:+61367185 | None:intergenic |
| GCCGTTGCTGCTCTTGCAAG+TGG | 0.509723 | 5_4:-61369837 | Msa0861880:CDS |
| TGCTCTAATCATAATAGTGT+TGG | 0.509813 | 5_4:-61371528 | Msa0861880:CDS |
| TATGGTTACACTTACACCTC+TGG | 0.510270 | 5_4:+61367092 | None:intergenic |
| GTAGTATCTTGTGCAGAGGC+TGG | 0.511756 | 5_4:-61368410 | Msa0861880:CDS |
| AACCATGCTGCTCCAACAGC+AGG | 0.514568 | 5_4:+61367425 | None:intergenic |
| TCTTCTGAGAGATAAAGATT+GGG | 0.516082 | 5_4:+61371930 | None:intergenic |
| GTGTGGTTCAAAACGATCTT+CGG | 0.516505 | 5_4:-61370162 | Msa0861880:CDS |
| ATCAACAAAGAATTCTCAGT+TGG | 0.518161 | 5_4:-61370094 | Msa0861880:CDS |
| GGAAACATTAGAGCAAGTTA+TGG | 0.525125 | 5_4:-61370201 | Msa0861880:CDS |
| GGTAACTATTTACACAAGCA+AGG | 0.526678 | 5_4:+61367113 | None:intergenic |
| GGTATAGGAATGGTGAAACA+TGG | 0.529685 | 5_4:-61371713 | Msa0861880:CDS |
| CAAACACAAAGTGGGATGTA+GGG | 0.530904 | 5_4:-61367684 | Msa0861880:CDS |
| AACAATGTTTCTGTCTCAGA+TGG | 0.535011 | 5_4:-61371672 | Msa0861880:CDS |
| TCCACTTGCAAGAGCAGCAA+CGG | 0.536786 | 5_4:+61369836 | None:intergenic |
| GCTGCAATGCGGGCCCAAGA+TGG | 0.543762 | 5_4:+61368446 | None:intergenic |
| TTTATTAGCAAATGGTACAT+TGG | 0.546696 | 5_4:-61367224 | Msa0861880:three_prime_UTR |
| TCAATGTTGACGGAGAAGAA+AGG | 0.547686 | 5_4:+61371814 | None:intergenic |
| AATAAGTATCTGAATGATGC+CGG | 0.548052 | 5_4:-61371772 | Msa0861880:exon |
| CTCCCTGTCCTTGCTAAGTG+AGG | 0.554977 | 5_4:-61367188 | Msa0861880:three_prime_UTR |
| TTCTTTGTTGATCTGTTGGA+TGG | 0.558478 | 5_4:+61370105 | None:intergenic |
| GTAACTATTTACACAAGCAA+GGG | 0.563627 | 5_4:+61367114 | None:intergenic |
| GGTGCTTCCCATTAGACCTA+AGG | 0.571799 | 5_4:-61367623 | Msa0861880:intron |
| TTCTTGATTCGGAGATGAAG+AGG | 0.573073 | 5_4:-61371734 | Msa0861880:CDS |
| TTCAGTAAATCCATATGCAA+TGG | 0.574987 | 5_4:+61369767 | None:intergenic |
| CAAGTGTTAAAGCTGTTGTA+GGG | 0.578022 | 5_4:-61368337 | Msa0861880:CDS |
| TATCTGAATGATGCCGGAGA+AGG | 0.578412 | 5_4:-61371766 | Msa0861880:exon |
| ACTGACAATTCATGATGAAG+TGG | 0.578513 | 5_4:-61367355 | Msa0861880:exon |
| GCAGATGCGCTTTCAAAGTG+TGG | 0.579158 | 5_4:-61370179 | Msa0861880:CDS |
| AGTTGTAGTATCTTGTGCAG+AGG | 0.585349 | 5_4:-61368414 | Msa0861880:CDS |
| CGATAAAGACAACTCTCGTA+TGG | 0.585945 | 5_4:+61367074 | None:intergenic |
| GAGATGAAGAGGTATAGGAA+TGG | 0.586169 | 5_4:-61371723 | Msa0861880:CDS |
| TGGATATGGAATATCTGCGC+AGG | 0.586238 | 5_4:-61368724 | Msa0861880:CDS |
| GTATAGGAATGGTGAAACAT+GGG | 0.588471 | 5_4:-61371712 | Msa0861880:CDS |
| CTGCCCCAGTCACCTAAGAC+AGG | 0.590138 | 5_4:+61369711 | None:intergenic |
| TTTCTACAGAAATTGCTGCA+AGG | 0.590652 | 5_4:-61370223 | Msa0861880:intron |
| TTCTTGAAGCAAACACAAAG+TGG | 0.592334 | 5_4:-61367693 | Msa0861880:CDS |
| CTGAAGATGGAAAAGAAGCA+AGG | 0.600282 | 5_4:-61369749 | Msa0861880:CDS |
| ACGCCACCAACCATGACAAG+CGG | 0.606206 | 5_4:+61367715 | None:intergenic |
| TGAAGATGGAAAAGAAGCAA+GGG | 0.610105 | 5_4:-61369748 | Msa0861880:CDS |
| AAACTGTGCCTCACTTAGCA+AGG | 0.617081 | 5_4:+61367180 | None:intergenic |
| ATAGAAGCACATGATGGTCG+TGG | 0.617860 | 5_4:-61368687 | Msa0861880:CDS |
| ATCTGTTGGATGGTTAACAC+CGG | 0.625271 | 5_4:+61370115 | None:intergenic |
| TCTTGAAGCAAACACAAAGT+GGG | 0.629952 | 5_4:-61367692 | Msa0861880:CDS |
| AAACAGGTAGAGCCTGCTGT+TGG | 0.632953 | 5_4:-61367437 | Msa0861880:intron |
| CATTTCCAAATACTTTCCTG+GGG | 0.634649 | 5_4:-61367644 | Msa0861880:CDS |
| ACTTCATCATGAATTGTCAG+TGG | 0.636732 | 5_4:+61367357 | None:intergenic |
| TTTCATGAAAGAATATAACA+AGG | 0.640802 | 5_4:-61367390 | Msa0861880:CDS |
| GCGGTAATAGAAGCACATGA+TGG | 0.649285 | 5_4:-61368693 | Msa0861880:CDS |
| CTTGTGTAAATAGTTACCAG+AGG | 0.649586 | 5_4:-61367108 | Msa0861880:three_prime_UTR |
| TGTGTATTAATTGCTGGCAC+AGG | 0.650395 | 5_4:-61369792 | Msa0861880:CDS |
| CATACAAATACAAACAGTTG+AGG | 0.651810 | 5_4:+61371620 | None:intergenic |
| ATATATTTCCAAGTGATGTG+AGG | 0.653488 | 5_4:-61369878 | Msa0861880:CDS |
| AGCCTGCTGTTGGAGCAGCA+TGG | 0.659631 | 5_4:-61367427 | Msa0861880:CDS |
| ATCTGCGCAGGCACTAACTG+CGG | 0.661132 | 5_4:-61368712 | Msa0861880:CDS |
| TGCCTCACTTAGCAAGGACA+GGG | 0.661481 | 5_4:+61367186 | None:intergenic |
| TTGTGCAGAGGCTGGCGATG+AGG | 0.669812 | 5_4:-61368402 | Msa0861880:CDS |
| ATACAGCCAAACATACAGCT+CGG | 0.679468 | 5_4:+61370138 | None:intergenic |
| CTGGAACGAGTGCTGCAATG+CGG | 0.681899 | 5_4:+61368435 | None:intergenic |
| TGACGGAGAAGAAAGGGACA+AGG | 0.687042 | 5_4:+61371821 | None:intergenic |
| GTAGGGAGACTTGGATTGTG+CGG | 0.692237 | 5_4:-61368320 | Msa0861880:CDS |
| GGACCTGTCTTAGGTGACTG+GGG | 0.694401 | 5_4:-61369714 | Msa0861880:CDS |
| CTCACTTAGCAAGGACAGGG+AGG | 0.703456 | 5_4:+61367189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATTACTTTCATT+TGG | - | chr5_4:61370101-61370120 | Msa0861880:CDS | 10.0% |
| !! | TTAAATTTAAAAGAAATTGA+TGG | - | chr5_4:61371097-61371116 | Msa0861880:intron | 10.0% |
| !!! | ATAGAATGAAATTTTAAATT+TGG | - | chr5_4:61371467-61371486 | Msa0861880:intron | 10.0% |
| !! | AAAAATATTGATAAAAAGAA+AGG | - | chr5_4:61371613-61371632 | Msa0861880:CDS | 10.0% |
| !! | ATTATGTAGTAATACTTATT+TGG | - | chr5_4:61367522-61367541 | Msa0861880:intron | 15.0% |
| !! | ATGTAAGAAATTCATAATTT+AGG | - | chr5_4:61367964-61367983 | Msa0861880:intron | 15.0% |
| !! | AACTTATAGTTTATATGAAA+AGG | + | chr5_4:61369451-61369470 | None:intergenic | 15.0% |
| !!! | GAAAGTAATAATTTTTACAT+TGG | + | chr5_4:61370098-61370117 | None:intergenic | 15.0% |
| !! | TGCTAATAAAATATAAACTT+TGG | + | chr5_4:61371701-61371720 | None:intergenic | 15.0% |
| !!! | GTTTATATTTTATTAGCAAA+TGG | - | chr5_4:61371703-61371722 | Msa0861880:CDS | 15.0% |
| !!! | AGAATTTTGAATGAATGATT+AGG | - | chr5_4:61367552-61367571 | Msa0861880:intron | 20.0% |
| !! | TTGTTTACATTAATAGTGTT+TGG | - | chr5_4:61368157-61368176 | Msa0861880:intron | 20.0% |
| !! | TACAAAGATTTGTCAAATAA+CGG | - | chr5_4:61368327-61368346 | Msa0861880:CDS | 20.0% |
| !!! | CATTTGTTTTATATTGTAGA+AGG | - | chr5_4:61368535-61368554 | Msa0861880:intron | 20.0% |
| !! | AAAAGGTAACATCAATTTAT+AGG | + | chr5_4:61369685-61369704 | None:intergenic | 20.0% |
| !! | ATAGATTTGAAGAAAGAAAA+AGG | + | chr5_4:61369702-61369721 | None:intergenic | 20.0% |
| !! | AAAAATGGATATAATCAAGT+TGG | + | chr5_4:61370162-61370181 | None:intergenic | 20.0% |
| !!! | TCAAAATGGCTTTAAATTAT+AGG | + | chr5_4:61370407-61370426 | None:intergenic | 20.0% |
| !! | AAATAAGATCTTGCTAAAAT+CGG | - | chr5_4:61370560-61370579 | Msa0861880:intron | 20.0% |
| !! | TTTACCTCATATTAATAGTA+TGG | - | chr5_4:61371033-61371052 | Msa0861880:intron | 20.0% |
| !! | TTATCCATACTATTAATATG+AGG | + | chr5_4:61371040-61371059 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAGTAATTGACT+TGG | - | chr5_4:61371058-61371077 | Msa0861880:intron | 20.0% |
| !!! | TGACTGATATTATGTAATTT+TGG | - | chr5_4:61371177-61371196 | Msa0861880:intron | 20.0% |
| !! | TTTCATGAAAGAATATAACA+AGG | - | chr5_4:61371545-61371564 | Msa0861880:CDS | 20.0% |
| ! | AAGAGAAAAATCAATGTTGA+CGG | + | chr5_4:61367134-61367153 | None:intergenic | 25.0% |
| ! | TGAGAAAAATGAATGATCAT+AGG | + | chr5_4:61367341-61367360 | None:intergenic | 25.0% |
| !!! | CATTCATTCTCTCTATTTTT+TGG | - | chr5_4:61367441-61367460 | Msa0861880:intron | 25.0% |
| ! | TTATACTAAACAGCTTATCA+CGG | + | chr5_4:61367728-61367747 | None:intergenic | 25.0% |
| ! | TGATAAGCTGTTTAGTATAA+AGG | - | chr5_4:61367728-61367747 | Msa0861880:CDS | 25.0% |
| ! | TATAAAGGTTTGTCATATAG+TGG | - | chr5_4:61367743-61367762 | Msa0861880:intron | 25.0% |
| ! | GTGATTGATTGTTTAATACT+AGG | - | chr5_4:61367851-61367870 | Msa0861880:intron | 25.0% |
| !! | TTAATACTAGGAGAATTTTG+AGG | - | chr5_4:61367863-61367882 | Msa0861880:intron | 25.0% |
| !!! | GAAAAAGAACTTGTTTTTAC+TGG | - | chr5_4:61367916-61367935 | Msa0861880:intron | 25.0% |
| ! | TAGGAAAATCTGTTATGTTA+TGG | - | chr5_4:61367983-61368002 | Msa0861880:intron | 25.0% |
| !!! | AGTTTTGATTTTTTGTTTCC+TGG | - | chr5_4:61368091-61368110 | Msa0861880:intron | 25.0% |
| !!! | GTTTTGATTTTTTGTTTCCT+GGG | - | chr5_4:61368092-61368111 | Msa0861880:intron | 25.0% |
| ! | TAATCCACAAGAAAAAAAAG+GGG | + | chr5_4:61368207-61368226 | None:intergenic | 25.0% |
| ! | CTAATCCACAAGAAAAAAAA+GGG | + | chr5_4:61368208-61368227 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTCTTGTGGATTA+GGG | - | chr5_4:61368207-61368226 | Msa0861880:intron | 25.0% |
| ! | TATTGCAGAACAATAACAAT+TGG | + | chr5_4:61368297-61368316 | None:intergenic | 25.0% |
| ! | CTAAATGATGAATTTCTAAC+AGG | + | chr5_4:61368588-61368607 | None:intergenic | 25.0% |
| ! | CTGTTAGAAATTCATCATTT+AGG | - | chr5_4:61368586-61368605 | Msa0861880:intron | 25.0% |
| ! | ACTTAAGAGTAATATTAGCA+GGG | + | chr5_4:61368926-61368945 | None:intergenic | 25.0% |
| ! | TACTTAAGAGTAATATTAGC+AGG | + | chr5_4:61368927-61368946 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr5_4:61369345-61369364 | None:intergenic | 25.0% |
| ! | TAAGCTATCTCTATAACAAA+AGG | - | chr5_4:61369410-61369429 | Msa0861880:intron | 25.0% |
| ! | ACATCAATCATAATATGACT+AGG | - | chr5_4:61369743-61369762 | Msa0861880:CDS | 25.0% |
| !!! | ATGACTAGGAATTGTTTTTT+TGG | - | chr5_4:61369757-61369776 | Msa0861880:CDS | 25.0% |
| !!! | TTTTTTGGAAAAAGAACCTT+CGG | - | chr5_4:61369772-61369791 | Msa0861880:CDS | 25.0% |
| !! | TGAATCTTATTGGATGTTTT+TGG | + | chr5_4:61369954-61369973 | None:intergenic | 25.0% |
| ! | CTAACAAAACTGAATCTTAT+TGG | + | chr5_4:61369964-61369983 | None:intergenic | 25.0% |
| !!! | CAATAAGATTCAGTTTTGTT+AGG | - | chr5_4:61369962-61369981 | Msa0861880:intron | 25.0% |
| ! | TTTACATTGGATGAAAATGA+GGG | + | chr5_4:61370085-61370104 | None:intergenic | 25.0% |
| !! | TTTTACATTGGATGAAAATG+AGG | + | chr5_4:61370086-61370105 | None:intergenic | 25.0% |
| ! | GCAAAAATGTCAACAAAAAA+TGG | + | chr5_4:61370177-61370196 | None:intergenic | 25.0% |
| !! | TTTTGCTTTAATATTTGCAG+TGG | - | chr5_4:61370191-61370210 | Msa0861880:CDS | 25.0% |
| ! | TTTAATATTTGCAGTGGATA+TGG | - | chr5_4:61370197-61370216 | Msa0861880:CDS | 25.0% |
| ! | ATTACATGTAGATCTTAATG+TGG | - | chr5_4:61370787-61370806 | Msa0861880:intron | 25.0% |
| !! | AAATTACGATTTTTACTGCT+TGG | - | chr5_4:61370967-61370986 | Msa0861880:intron | 25.0% |
| ! | AATTTAAATGAATGCTCTAG+AGG | + | chr5_4:61371084-61371103 | None:intergenic | 25.0% |
| ! | TACACAAATCATCATCATAT+AGG | + | chr5_4:61371153-61371172 | None:intergenic | 25.0% |
| !! | AAATTTGGTTTATTGCAAAC+AGG | - | chr5_4:61371482-61371501 | Msa0861880:intron | 25.0% |
| ! | TTGGATGTACATAAACTATA+TGG | + | chr5_4:61371682-61371701 | None:intergenic | 25.0% |
| ! | TTTATTAGCAAATGGTACAT+TGG | - | chr5_4:61371711-61371730 | Msa0861880:CDS | 25.0% |
| ! | ATCGTCACATAAATTACTAT+TGG | - | chr5_4:61371880-61371899 | Msa0861880:five_prime_UTR | 25.0% |
| ! | TCTTCTGAGAGATAAAGATT+GGG | + | chr5_4:61367008-61367027 | None:intergenic | 30.0% |
| ! | TTCTTCTGAGAGATAAAGAT+TGG | + | chr5_4:61367009-61367028 | None:intergenic | 30.0% |
| AGAAAAAGAGATTGATACAG+TGG | - | chr5_4:61367025-61367044 | Msa0861880:three_prime_UTR | 30.0% | |
| AATAAGTATCTGAATGATGC+CGG | - | chr5_4:61367163-61367182 | Msa0861880:three_prime_UTR | 30.0% | |
| CATACAAATACAAACAGTTG+AGG | + | chr5_4:61367318-61367337 | None:intergenic | 30.0% | |
| AATCTCTTCCTATTCTTTCA+AGG | - | chr5_4:61367372-61367391 | Msa0861880:exon | 30.0% | |
| ATCTCTTCCTATTCTTTCAA+GGG | - | chr5_4:61367373-61367392 | Msa0861880:CDS | 30.0% | |
| TGCTCTAATCATAATAGTGT+TGG | - | chr5_4:61367407-61367426 | Msa0861880:CDS | 30.0% | |
| ! | TCTAATCATAATAGTGTTGG+AGG | - | chr5_4:61367410-61367429 | Msa0861880:CDS | 30.0% |
| GTACATTGATAAACCTTGTT+TGG | - | chr5_4:61367579-61367598 | Msa0861880:intron | 30.0% | |
| !!! | TTCAATTCCCCCTTTTTTTT+TGG | - | chr5_4:61367618-61367637 | Msa0861880:intron | 30.0% |
| ATCCCCAATCCAAAAAAAAA+GGG | + | chr5_4:61367630-61367649 | None:intergenic | 30.0% | |
| TATCCCCAATCCAAAAAAAA+AGG | + | chr5_4:61367631-61367650 | None:intergenic | 30.0% | |
| TACCATTGTTTAGTCCATAT+TGG | - | chr5_4:61368006-61368025 | Msa0861880:intron | 30.0% | |
| ATCGATAATAACCTCCAATA+TGG | + | chr5_4:61368023-61368042 | None:intergenic | 30.0% | |
| ! | ATCGATTCTCTCTGTTATAT+TGG | - | chr5_4:61368037-61368056 | Msa0861880:intron | 30.0% |
| !!! | TTTTTGTTTTCTGGGTTTGT+TGG | - | chr5_4:61368127-61368146 | Msa0861880:intron | 30.0% |
| !!! | TTTTGTTTTCTGGGTTTGTT+GGG | - | chr5_4:61368128-61368147 | Msa0861880:intron | 30.0% |
| AATCCACAAGAAAAAAAAGG+GGG | + | chr5_4:61368206-61368225 | None:intergenic | 30.0% | |
| CCTAATCCACAAGAAAAAAA+AGG | + | chr5_4:61368209-61368228 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTTCTTGTGGATT+AGG | - | chr5_4:61368206-61368225 | Msa0861880:intron | 30.0% |
| GATTCAATGTTGTCAAATAG+TGG | - | chr5_4:61368245-61368264 | Msa0861880:intron | 30.0% | |
| ! | CGATACACTATTTTGTACAA+AGG | - | chr5_4:61368356-61368375 | Msa0861880:CDS | 30.0% |
| TACAATACTAGGAGAATTTG+AGG | - | chr5_4:61368474-61368493 | Msa0861880:intron | 30.0% | |
| TAGGAAAAACTGCTATGTTA+TGG | - | chr5_4:61368605-61368624 | Msa0861880:intron | 30.0% | |
| ATCATATTTGTCCTAAACGA+TGG | + | chr5_4:61368633-61368652 | None:intergenic | 30.0% | |
| AAAATGAAGATCACATTGCA+AGG | - | chr5_4:61368654-61368673 | Msa0861880:CDS | 30.0% | |
| AGCAATTTCTGTAGAAAAAG+TGG | + | chr5_4:61368709-61368728 | None:intergenic | 30.0% | |
| AGAATTCTTTGTTGATCTGT+TGG | + | chr5_4:61368837-61368856 | None:intergenic | 30.0% | |
| ATCAACAAAGAATTCTCAGT+TGG | - | chr5_4:61368841-61368860 | Msa0861880:intron | 30.0% | |
| TTGCTCTATATTACTGTATC+TGG | - | chr5_4:61368870-61368889 | Msa0861880:intron | 30.0% | |
| ! | GACTTATTTGTGCATTTTTG+TGG | - | chr5_4:61368968-61368987 | Msa0861880:intron | 30.0% |
| ATATATTTCCAAGTGATGTG+AGG | - | chr5_4:61369057-61369076 | Msa0861880:intron | 30.0% | |
| TTCAGTAAATCCATATGCAA+TGG | + | chr5_4:61369171-61369190 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCAATCA+TGG | - | chr5_4:61369468-61369487 | Msa0861880:intron | 30.0% |
| ! | AAAAAAGAGCTAGTTTGGAT+TGG | + | chr5_4:61369585-61369604 | None:intergenic | 30.0% |
| CATGTAAAAAAGAGCTAGTT+TGG | + | chr5_4:61369590-61369609 | None:intergenic | 30.0% | |
| TTTACATGAAAATGAGCTTC+TGG | - | chr5_4:61369602-61369621 | Msa0861880:intron | 30.0% | |
| !! | TTTTTGGAAAAAGAACCTTC+GGG | - | chr5_4:61369773-61369792 | Msa0861880:CDS | 30.0% |
| ! | TGTTAGGTTTGCAGTATTTT+TGG | - | chr5_4:61369978-61369997 | Msa0861880:intron | 30.0% |
| !!! | ATGTTTTAAGGTTTTGGGTA+GGG | + | chr5_4:61370025-61370044 | None:intergenic | 30.0% |
| !!! | AATGTTTTAAGGTTTTGGGT+AGG | + | chr5_4:61370026-61370045 | None:intergenic | 30.0% |
| TACCCAAAACCTTAAAACAT+TGG | - | chr5_4:61370025-61370044 | Msa0861880:intron | 30.0% | |
| ACCCAAAACCTTAAAACATT+GGG | - | chr5_4:61370026-61370045 | Msa0861880:intron | 30.0% | |
| !!! | ACCCAATGTTTTAAGGTTTT+GGG | + | chr5_4:61370030-61370049 | None:intergenic | 30.0% |
| !!! | TACCCAATGTTTTAAGGTTT+TGG | + | chr5_4:61370031-61370050 | None:intergenic | 30.0% |
| ACCTTAAAACATTGGGTATA+CGG | - | chr5_4:61370033-61370052 | Msa0861880:intron | 30.0% | |
| ! | AGTAGTATTTTACAAACGCT+TGG | - | chr5_4:61370290-61370309 | Msa0861880:intron | 30.0% |
| !! | AATTTAAAGCCATTTTGAGC+TGG | - | chr5_4:61370409-61370428 | Msa0861880:intron | 30.0% |
| !! | TGAAGTAAGATTTTGTTGTG+AGG | + | chr5_4:61370751-61370770 | None:intergenic | 30.0% |
| ACTGACATTTACAATTGAAG+GGG | + | chr5_4:61370938-61370957 | None:intergenic | 30.0% | |
| CACTGACATTTACAATTGAA+GGG | + | chr5_4:61370939-61370958 | None:intergenic | 30.0% | |
| TAATATGAGGTAAAGTTTGC+AGG | + | chr5_4:61371027-61371046 | None:intergenic | 30.0% | |
| !! | GTAATTTTGGCAGATGAAAA+AGG | - | chr5_4:61371190-61371209 | Msa0861880:intron | 30.0% |
| TCATTCTATGCTAAAGATTC+TGG | + | chr5_4:61371456-61371475 | None:intergenic | 30.0% | |
| GAAGTGAAAAATCCAATTCT+TGG | - | chr5_4:61371635-61371654 | Msa0861880:CDS | 30.0% | |
| TTTACTTTACAGCCAAGAAT+TGG | + | chr5_4:61371650-61371669 | None:intergenic | 30.0% | |
| GTAACTATTTACACAAGCAA+GGG | + | chr5_4:61371824-61371843 | None:intergenic | 30.0% | |
| ! | GGAGCAATTGATTCTTGATT+CGG | - | chr5_4:61367190-61367209 | Msa0861880:three_prime_UTR | 35.0% |
| GTATAGGAATGGTGAAACAT+GGG | - | chr5_4:61367223-61367242 | Msa0861880:three_prime_UTR | 35.0% | |
| ! | AACAATGTTTCTGTCTCAGA+TGG | - | chr5_4:61367263-61367282 | Msa0861880:three_prime_UTR | 35.0% |
| AGTCAACACTAAACCAAACA+AGG | + | chr5_4:61367595-61367614 | None:intergenic | 35.0% | |
| !!! | TTCCCCCTTTTTTTTTGGAT+TGG | - | chr5_4:61367623-61367642 | Msa0861880:intron | 35.0% |
| !!! | TCCCCCTTTTTTTTTGGATT+GGG | - | chr5_4:61367624-61367643 | Msa0861880:CDS | 35.0% |
| TCCCCAATCCAAAAAAAAAG+GGG | + | chr5_4:61367629-61367648 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGGATTGGGGATAG+TGG | - | chr5_4:61367632-61367651 | Msa0861880:CDS | 35.0% |
| !!! | TTTTTTGGATTGGGGATAGT+GGG | - | chr5_4:61367633-61367652 | Msa0861880:CDS | 35.0% |
| AAACAATCAATCACAGATCG+CGG | + | chr5_4:61367845-61367864 | None:intergenic | 35.0% | |
| !!! | AATTTTGAGGATGCTGGTTT+TGG | - | chr5_4:61367876-61367895 | Msa0861880:intron | 35.0% |
| !!! | CTTGTTTTTACTGGAGAAAG+TGG | - | chr5_4:61367925-61367944 | Msa0861880:intron | 35.0% |
| ! | CTCCAATATGGACTAAACAA+TGG | + | chr5_4:61368011-61368030 | None:intergenic | 35.0% |
| CATTGTTTAGTCCATATTGG+AGG | - | chr5_4:61368009-61368028 | Msa0861880:intron | 35.0% | |
| !!! | GGCTGTTTGACTTCATTTTT+TGG | - | chr5_4:61368058-61368077 | Msa0861880:intron | 35.0% |
| !! | TTTTTGTTTCCTGGGTTTGT+TGG | - | chr5_4:61368100-61368119 | Msa0861880:intron | 35.0% |
| !! | TTTTGTTTCCTGGGTTTGTT+GGG | - | chr5_4:61368101-61368120 | Msa0861880:intron | 35.0% |
| !!! | TTGGGGTGTTTTTGTTTTCT+GGG | - | chr5_4:61368119-61368138 | Msa0861880:intron | 35.0% |
| !!! | TTTGTTTTCTGGGTTTGTTG+GGG | - | chr5_4:61368129-61368148 | Msa0861880:intron | 35.0% |
| !!! | ATTCCCCCTTTTTTTTCTTG+TGG | - | chr5_4:61368200-61368219 | Msa0861880:intron | 35.0% |
| TTGTAACTAATCGCAGATTG+TGG | + | chr5_4:61368459-61368478 | None:intergenic | 35.0% | |
| ! | CTGCGATTAGTTACAATACT+AGG | - | chr5_4:61368463-61368482 | Msa0861880:CDS | 35.0% |
| ATGTTATGGTACCATCGTTT+AGG | - | chr5_4:61368619-61368638 | Msa0861880:CDS | 35.0% | |
| TTTCTACAGAAATTGCTGCA+AGG | - | chr5_4:61368712-61368731 | Msa0861880:CDS | 35.0% | |
| TTCTACAGAAATTGCTGCAA+GGG | - | chr5_4:61368713-61368732 | Msa0861880:CDS | 35.0% | |
| GGAAACATTAGAGCAAGTTA+TGG | - | chr5_4:61368734-61368753 | Msa0861880:intron | 35.0% | |
| TTCTTTGTTGATCTGTTGGA+TGG | + | chr5_4:61368833-61368852 | None:intergenic | 35.0% | |
| ! | AAAGAATTCTCAGTTGGCTT+AGG | - | chr5_4:61368847-61368866 | Msa0861880:intron | 35.0% |
| !! | TGTTTCTCTGCTACTTTAAC+AGG | - | chr5_4:61369033-61369052 | Msa0861880:intron | 35.0% |
| !! | GTTTCTCTGCTACTTTAACA+GGG | - | chr5_4:61369034-61369053 | Msa0861880:intron | 35.0% |
| ACATATAACCTCACATCACT+TGG | + | chr5_4:61369068-61369087 | None:intergenic | 35.0% | |
| CATGGATGTGTATTAATTGC+TGG | - | chr5_4:61369137-61369156 | Msa0861880:intron | 35.0% | |
| GCATATGGATTTACTGAAGA+TGG | - | chr5_4:61369173-61369192 | Msa0861880:intron | 35.0% | |
| TGAAGATGGAAAAGAAGCAA+GGG | - | chr5_4:61369187-61369206 | Msa0861880:intron | 35.0% | |
| TGCTAAGAAATAGAGAGAGA+GGG | + | chr5_4:61369291-61369310 | None:intergenic | 35.0% | |
| !!! | GAAAGCATTTTCCTGCTAAT+TGG | + | chr5_4:61369659-61369678 | None:intergenic | 35.0% |
| !! | TTTTGGAAAAAGAACCTTCG+GGG | - | chr5_4:61369774-61369793 | Msa0861880:CDS | 35.0% |
| GAGTAACCACTTAAGTGATT+TGG | - | chr5_4:61369851-61369870 | Msa0861880:CDS | 35.0% | |
| CACATCTACACTCAAAACTA+GGG | - | chr5_4:61369878-61369897 | Msa0861880:CDS | 35.0% | |
| ACATCTACACTCAAAACTAG+GGG | - | chr5_4:61369879-61369898 | Msa0861880:CDS | 35.0% | |
| !!! | TTTTTTGCCGCAAAATCGAT+CGG | + | chr5_4:61369922-61369941 | None:intergenic | 35.0% |
| !!! | TGTTTTAAGGTTTTGGGTAG+GGG | + | chr5_4:61370024-61370043 | None:intergenic | 35.0% |
| CCTTAAAACATTGGGTATAC+GGG | - | chr5_4:61370034-61370053 | Msa0861880:intron | 35.0% | |
| GTTGAGCAACATATAAGTGA+AGG | + | chr5_4:61370061-61370080 | None:intergenic | 35.0% | |
| TCTTCTGCAGAAGAATTGAT+TGG | - | chr5_4:61370317-61370336 | Msa0861880:intron | 35.0% | |
| CTTCTGCAGAAGAATTGATT+GGG | - | chr5_4:61370318-61370337 | Msa0861880:intron | 35.0% | |
| TCAAGTGTTAAAGCTGTTGT+AGG | - | chr5_4:61370597-61370616 | Msa0861880:intron | 35.0% | |
| CAAGTGTTAAAGCTGTTGTA+GGG | - | chr5_4:61370598-61370617 | Msa0861880:intron | 35.0% | |
| ! | GCACTGACATTTACAATTGA+AGG | + | chr5_4:61370940-61370959 | None:intergenic | 35.0% |
| TTCTTGAAGCAAACACAAAG+TGG | - | chr5_4:61371242-61371261 | Msa0861880:intron | 35.0% | |
| TCTTGAAGCAAACACAAAGT+GGG | - | chr5_4:61371243-61371262 | Msa0861880:intron | 35.0% | |
| TGCATTTCCAAATACTTTCC+TGG | - | chr5_4:61371289-61371308 | Msa0861880:intron | 35.0% | |
| GCATTTCCAAATACTTTCCT+GGG | - | chr5_4:61371290-61371309 | Msa0861880:intron | 35.0% | |
| CATTTCCAAATACTTTCCTG+GGG | - | chr5_4:61371291-61371310 | Msa0861880:intron | 35.0% | |
| ATACTGACCTTAGGTCTAAT+GGG | + | chr5_4:61371322-61371341 | None:intergenic | 35.0% | |
| TATACTGACCTTAGGTCTAA+TGG | + | chr5_4:61371323-61371342 | None:intergenic | 35.0% | |
| TGACGATATATACTGACCTT+AGG | + | chr5_4:61371331-61371350 | None:intergenic | 35.0% | |
| ATTTACTAAGCCTCTAAGCA+AGG | + | chr5_4:61371425-61371444 | None:intergenic | 35.0% | |
| ACTTCATCATGAATTGTCAG+TGG | + | chr5_4:61371581-61371600 | None:intergenic | 35.0% | |
| ACTGACAATTCATGATGAAG+TGG | - | chr5_4:61371580-61371599 | Msa0861880:CDS | 35.0% | |
| TTAGCAAATGGTACATTGGT+AGG | - | chr5_4:61371715-61371734 | Msa0861880:CDS | 35.0% | |
| ! | TTACACAAGCAAGGGTTTTA+AGG | + | chr5_4:61371816-61371835 | None:intergenic | 35.0% |
| GGTAACTATTTACACAAGCA+AGG | + | chr5_4:61371825-61371844 | None:intergenic | 35.0% | |
| CTTGTGTAAATAGTTACCAG+AGG | - | chr5_4:61371827-61371846 | Msa0861880:five_prime_UTR | 35.0% | |
| CAATGTTGACGGAGAAGAAA+GGG | + | chr5_4:61367123-61367142 | None:intergenic | 40.0% | |
| TCAATGTTGACGGAGAAGAA+AGG | + | chr5_4:61367124-61367143 | None:intergenic | 40.0% | |
| AGAATCAATTGCTCCTTCTC+CGG | + | chr5_4:61367185-61367204 | None:intergenic | 40.0% | |
| !! | TTCTTGATTCGGAGATGAAG+AGG | - | chr5_4:61367201-61367220 | Msa0861880:three_prime_UTR | 40.0% |
| ! | ATTCGGAGATGAAGAGGTAT+AGG | - | chr5_4:61367207-61367226 | Msa0861880:three_prime_UTR | 40.0% |
| ! | GAGATGAAGAGGTATAGGAA+TGG | - | chr5_4:61367212-61367231 | Msa0861880:three_prime_UTR | 40.0% |
| GGTATAGGAATGGTGAAACA+TGG | - | chr5_4:61367222-61367241 | Msa0861880:three_prime_UTR | 40.0% | |
| ! | TGTCTCAGATGGTGTTTTGT+TGG | - | chr5_4:61367274-61367293 | Msa0861880:three_prime_UTR | 40.0% |
| !! | GTCTCAGATGGTGTTTTGTT+GGG | - | chr5_4:61367275-61367294 | Msa0861880:three_prime_UTR | 40.0% |
| !! | GGTGTTTTGTTGGGTTTAGA+TGG | - | chr5_4:61367284-61367303 | Msa0861880:three_prime_UTR | 40.0% |
| !! | GTTTTGTTGGGTTTAGATGG+TGG | - | chr5_4:61367287-61367306 | Msa0861880:three_prime_UTR | 40.0% |
| CCCCAATCCAAAAAAAAAGG+GGG | + | chr5_4:61367628-61367647 | None:intergenic | 40.0% | |
| !!! | CCCCCTTTTTTTTTGGATTG+GGG | - | chr5_4:61367625-61367644 | Msa0861880:CDS | 40.0% |
| TGGGTGGGAAGAATTCAAAT+AGG | - | chr5_4:61367652-61367671 | Msa0861880:CDS | 40.0% | |
| GGGTGGGAAGAATTCAAATA+GGG | - | chr5_4:61367653-61367672 | Msa0861880:CDS | 40.0% | |
| GGTGGGAAGAATTCAAATAG+GGG | - | chr5_4:61367654-61367673 | Msa0861880:CDS | 40.0% | |
| !! | TAGGAGAATTTTGAGGATGC+TGG | - | chr5_4:61367870-61367889 | Msa0861880:intron | 40.0% |
| !!! | TGGTTTTGGCTTAGGCAATT+TGG | - | chr5_4:61367890-61367909 | Msa0861880:intron | 40.0% |
| !!! | TTTTGGCTTAGGCAATTTGG+TGG | - | chr5_4:61367893-61367912 | Msa0861880:intron | 40.0% |
| ! | TTTGGCTTAGGCAATTTGGT+GGG | - | chr5_4:61367894-61367913 | Msa0861880:intron | 40.0% |
| !! | TTTGTTTCCTGGGTTTGTTG+GGG | - | chr5_4:61368102-61368121 | Msa0861880:intron | 40.0% |
| !!! | GTTGGGGTGTTTTTGTTTTC+TGG | - | chr5_4:61368118-61368137 | Msa0861880:intron | 40.0% |
| !! | TTCTTGTGGATTAGGGATAG+TGG | - | chr5_4:61368214-61368233 | Msa0861880:intron | 40.0% |
| !! | TCTTGTGGATTAGGGATAGT+GGG | - | chr5_4:61368215-61368234 | Msa0861880:intron | 40.0% |
| CTAGGAGAATTTGAGGATGT+TGG | - | chr5_4:61368481-61368500 | Msa0861880:intron | 40.0% | |
| GAATTTGAGGATGTTGGTCA+TGG | - | chr5_4:61368487-61368506 | Msa0861880:intron | 40.0% | |
| GTGTGGTTCAAAACGATCTT+CGG | - | chr5_4:61368773-61368792 | Msa0861880:intron | 40.0% | |
| ATACAGCCAAACATACAGCT+CGG | + | chr5_4:61368800-61368819 | None:intergenic | 40.0% | |
| ATCTGTTGGATGGTTAACAC+CGG | + | chr5_4:61368823-61368842 | None:intergenic | 40.0% | |
| GGAACAATTGGCAAACTTCA+TGG | - | chr5_4:61369119-61369138 | Msa0861880:intron | 40.0% | |
| TGTGTATTAATTGCTGGCAC+AGG | - | chr5_4:61369143-61369162 | Msa0861880:intron | 40.0% | |
| CTGAAGATGGAAAAGAAGCA+AGG | - | chr5_4:61369186-61369205 | Msa0861880:intron | 40.0% | |
| GTGCTAAGAAATAGAGAGAG+AGG | + | chr5_4:61369292-61369311 | None:intergenic | 40.0% | |
| TGTTTATCCAAACAAGGCCA+AGG | + | chr5_4:61369339-61369358 | None:intergenic | 40.0% | |
| AGACTGAGAATCCAATTAGC+AGG | - | chr5_4:61369645-61369664 | Msa0861880:intron | 40.0% | |
| ACTTGAGAGATCTCGACATT+GGG | - | chr5_4:61369824-61369843 | Msa0861880:CDS | 40.0% | |
| TGGTGTCCAAATCACTTAAG+TGG | + | chr5_4:61369860-61369879 | None:intergenic | 40.0% | |
| !!! | CCTAGTTTTGAGTGTAGATG+TGG | + | chr5_4:61369880-61369899 | None:intergenic | 40.0% |
| CCACATCTACACTCAAAACT+AGG | - | chr5_4:61369877-61369896 | Msa0861880:CDS | 40.0% | |
| CATCTACACTCAAAACTAGG+GGG | - | chr5_4:61369880-61369899 | Msa0861880:CDS | 40.0% | |
| !! | ATCAGTTCCGATCGATTTTG+CGG | - | chr5_4:61369912-61369931 | Msa0861880:intron | 40.0% |
| !!! | CAGTATTTTTGGACCGCATT+TGG | - | chr5_4:61369989-61370008 | Msa0861880:intron | 40.0% |
| ! | CCCGTATACCCAATGTTTTA+AGG | + | chr5_4:61370037-61370056 | None:intergenic | 40.0% |
| CTACTCGTCAGCATTGTATT+TGG | + | chr5_4:61370275-61370294 | None:intergenic | 40.0% | |
| ! | TACCCGTCTCTTTGAAAATC+AGG | - | chr5_4:61370451-61370470 | Msa0861880:intron | 40.0% |
| ! | CACCTGATTTTCAAAGAGAC+GGG | + | chr5_4:61370456-61370475 | None:intergenic | 40.0% |
| ! | CCACCTGATTTTCAAAGAGA+CGG | + | chr5_4:61370457-61370476 | None:intergenic | 40.0% |
| TCTGCACAAGATACTACAAC+TGG | + | chr5_4:61370522-61370541 | None:intergenic | 40.0% | |
| AGTTGTAGTATCTTGTGCAG+AGG | - | chr5_4:61370521-61370540 | Msa0861880:intron | 40.0% | |
| TGACAAATTCCACGAAGCAT+CGG | + | chr5_4:61370687-61370706 | None:intergenic | 40.0% | |
| CATGTGTCAACTTATCAGTG+TGG | + | chr5_4:61370854-61370873 | None:intergenic | 40.0% | |
| AATACGTGCTGTATCTGTGT+AGG | - | chr5_4:61370902-61370921 | Msa0861880:intron | 40.0% | |
| CAAACACAAAGTGGGATGTA+GGG | - | chr5_4:61371251-61371270 | Msa0861880:intron | 40.0% | |
| CCTGCAATAAAGACGTAGAA+AGG | + | chr5_4:61371370-61371389 | None:intergenic | 40.0% | |
| CCTTTCTACGTCTTTATTGC+AGG | - | chr5_4:61371367-61371386 | Msa0861880:intron | 40.0% | |
| TATGGTTACACTTACACCTC+TGG | + | chr5_4:61371846-61371865 | None:intergenic | 40.0% | |
| CGATAAAGACAACTCTCGTA+TGG | + | chr5_4:61371864-61371883 | None:intergenic | 40.0% | |
| TATCTGAATGATGCCGGAGA+AGG | - | chr5_4:61367169-61367188 | Msa0861880:three_prime_UTR | 45.0% | |
| GCAACAGCCCTTGAAAGAAT+AGG | + | chr5_4:61367383-61367402 | None:intergenic | 45.0% | |
| ATTCTTTCAAGGGCTGTTGC+TGG | - | chr5_4:61367383-61367402 | Msa0861880:CDS | 45.0% | |
| AAAAACACCCCAACAAACCC+AGG | + | chr5_4:61368112-61368131 | None:intergenic | 45.0% | |
| TGGTCATGGCTTAGGCAATT+TGG | - | chr5_4:61368501-61368520 | Msa0861880:intron | 45.0% | |
| CATGGCTTAGGCAATTTGGT+AGG | - | chr5_4:61368505-61368524 | Msa0861880:intron | 45.0% | |
| GCTGTATGTTTGGCTGTATC+CGG | - | chr5_4:61368801-61368820 | Msa0861880:intron | 45.0% | |
| GCTCTTGCAAGTGGAACAAT+TGG | - | chr5_4:61369107-61369126 | Msa0861880:intron | 45.0% | |
| AGAGAGAGAGGGAAAAGATG+AGG | + | chr5_4:61369280-61369299 | None:intergenic | 45.0% | |
| AAACAAGGCCAAGGTGTAGA+GGG | + | chr5_4:61369330-61369349 | None:intergenic | 45.0% | |
| AATGAGCTTCTGGTGAAGCA+AGG | - | chr5_4:61369612-61369631 | Msa0861880:intron | 45.0% | |
| AAAAAGAACCTTCGGGGTGT+TGG | - | chr5_4:61369780-61369799 | Msa0861880:CDS | 45.0% | |
| ! | AAAAGAACCTTCGGGGTGTT+GGG | - | chr5_4:61369781-61369800 | Msa0861880:CDS | 45.0% |
| CACTTGAGAGATCTCGACAT+TGG | - | chr5_4:61369823-61369842 | Msa0861880:CDS | 45.0% | |
| CTTTCATTTGGCACCCTAAC+AGG | - | chr5_4:61370113-61370132 | Msa0861880:CDS | 45.0% | |
| AAAGACCTTCCCTCCTGTTA+GGG | + | chr5_4:61370129-61370148 | None:intergenic | 45.0% | |
| TGGATATGGAATATCTGCGC+AGG | - | chr5_4:61370211-61370230 | Msa0861880:CDS | 45.0% | |
| ! | GCGGTAATAGAAGCACATGA+TGG | - | chr5_4:61370242-61370261 | Msa0861880:intron | 45.0% |
| ! | ATAGAAGCACATGATGGTCG+TGG | - | chr5_4:61370248-61370267 | Msa0861880:intron | 45.0% |
| !! | AGCCATTTTGAGCTGGATAC+AGG | - | chr5_4:61370416-61370435 | Msa0861880:intron | 45.0% |
| !! | GCCATTTTGAGCTGGATACA+GGG | - | chr5_4:61370417-61370436 | Msa0861880:intron | 45.0% |
| ACCCTGTATCCAGCTCAAAA+TGG | + | chr5_4:61370421-61370440 | None:intergenic | 45.0% | |
| ! | CCGTCTCTTTGAAAATCAGG+TGG | - | chr5_4:61370454-61370473 | Msa0861880:intron | 45.0% |
| GACTTACGCAGATCCATCTT+GGG | - | chr5_4:61370476-61370495 | Msa0861880:intron | 45.0% | |
| GCTAAAATCGGCGCAAGAAT+TGG | - | chr5_4:61370572-61370591 | Msa0861880:intron | 45.0% | |
| AAAGCTGTTGTAGGGAGACT+TGG | - | chr5_4:61370606-61370625 | Msa0861880:intron | 45.0% | |
| AGACTTGGATTGTGCGGTAA+AGG | - | chr5_4:61370621-61370640 | Msa0861880:intron | 45.0% | |
| CTGTATCTGTGTAGGACACT+GGG | - | chr5_4:61370910-61370929 | Msa0861880:intron | 45.0% | |
| GCAAACACAAAGTGGGATGT+AGG | - | chr5_4:61371250-61371269 | Msa0861880:intron | 45.0% | |
| !! | AAGCACCCCAGGAAAGTATT+TGG | + | chr5_4:61371299-61371318 | None:intergenic | 45.0% |
| GATGCACTAACCTTGCTTAG+AGG | - | chr5_4:61371412-61371431 | Msa0861880:intron | 45.0% | |
| AAACTGTGCCTCACTTAGCA+AGG | + | chr5_4:61371758-61371777 | None:intergenic | 45.0% | |
| !!! | TTTTTATTATTTTTATTTTC+TGG | - | chr5_4:61367476-61367495 | Msa0861880:intron | 5.0% |
| !!! | TTTTATTATTTTTATTTTCT+GGG | - | chr5_4:61367477-61367496 | Msa0861880:intron | 5.0% |
| TGACGGAGAAGAAAGGGACA+AGG | + | chr5_4:61367117-61367136 | None:intergenic | 50.0% | |
| !! | TTTGGATTGGGGATAGTGGG+TGG | - | chr5_4:61367636-61367655 | Msa0861880:CDS | 50.0% |
| !! | TTGGATTGGGGATAGTGGGT+GGG | - | chr5_4:61367637-61367656 | Msa0861880:CDS | 50.0% |
| TCACAGATCGCGGAAAACAG+TGG | + | chr5_4:61367835-61367854 | None:intergenic | 50.0% | |
| !!! | GAGGATGCTGGTTTTGGCTT+AGG | - | chr5_4:61367882-61367901 | Msa0861880:intron | 50.0% |
| !! | TGGATTAGGGATAGTGGGCA+GGG | - | chr5_4:61368220-61368239 | Msa0861880:intron | 50.0% |
| AGTGGCTGTAGCAGCTATAG+TGG | - | chr5_4:61368263-61368282 | Msa0861880:intron | 50.0% | |
| GAGGATGTTGGTCATGGCTT+AGG | - | chr5_4:61368493-61368512 | Msa0861880:intron | 50.0% | |
| GCAGATGCGCTTTCAAAGTG+TGG | - | chr5_4:61368756-61368775 | Msa0861880:intron | 50.0% | |
| TTCGGTCCGAGCTGTATGTT+TGG | - | chr5_4:61368791-61368810 | Msa0861880:intron | 50.0% | |
| TCCACTTGCAAGAGCAGCAA+CGG | + | chr5_4:61369102-61369121 | None:intergenic | 50.0% | |
| GGCACAGGAACCATTGCATA+TGG | - | chr5_4:61369158-61369177 | Msa0861880:intron | 50.0% | |
| AGGACCTGTCTTAGGTGACT+GGG | - | chr5_4:61369220-61369239 | Msa0861880:intron | 50.0% | |
| ! | GGTGTAGAGGGGCGTAAAAT+AGG | + | chr5_4:61369318-61369337 | None:intergenic | 50.0% |
| ! | TTTTACGCCCCTCTACACCT+TGG | - | chr5_4:61369319-61369338 | Msa0861880:intron | 50.0% |
| AACAAGGCCAAGGTGTAGAG+GGG | + | chr5_4:61369329-61369348 | None:intergenic | 50.0% | |
| CAAACAAGGCCAAGGTGTAG+AGG | + | chr5_4:61369331-61369350 | None:intergenic | 50.0% | |
| !! | CTCTACACCTTGGCCTTGTT+TGG | - | chr5_4:61369329-61369348 | Msa0861880:intron | 50.0% |
| !! | CTGGTGAAGCAAGGTGTTGT+TGG | - | chr5_4:61369621-61369640 | Msa0861880:intron | 50.0% |
| ! | GGGGTGTTCACATCCAAATG+CGG | + | chr5_4:61370005-61370024 | None:intergenic | 50.0% |
| TCATTTGGCACCCTAACAGG+AGG | - | chr5_4:61370116-61370135 | Msa0861880:CDS | 50.0% | |
| CATTTGGCACCCTAACAGGA+GGG | - | chr5_4:61370117-61370136 | Msa0861880:CDS | 50.0% | |
| GAAAGACCTTCCCTCCTGTT+AGG | + | chr5_4:61370130-61370149 | None:intergenic | 50.0% | |
| GGACTTACGCAGATCCATCT+TGG | - | chr5_4:61370475-61370494 | Msa0861880:intron | 50.0% | |
| GTAGTATCTTGTGCAGAGGC+TGG | - | chr5_4:61370525-61370544 | Msa0861880:intron | 50.0% | |
| GTAGGGAGACTTGGATTGTG+CGG | - | chr5_4:61370615-61370634 | Msa0861880:intron | 50.0% | |
| CACACATTACCGATGCTTCG+TGG | - | chr5_4:61370675-61370694 | Msa0861880:intron | 50.0% | |
| GCTGTATCTGTGTAGGACAC+TGG | - | chr5_4:61370909-61370928 | Msa0861880:intron | 50.0% | |
| ! | GCTTTTCCGCTTGTCATGGT+TGG | - | chr5_4:61371214-61371233 | Msa0861880:intron | 50.0% |
| TTTCCGCTTGTCATGGTTGG+TGG | - | chr5_4:61371217-61371236 | Msa0861880:intron | 50.0% | |
| GGTGCTTCCCATTAGACCTA+AGG | - | chr5_4:61371312-61371331 | Msa0861880:intron | 50.0% | |
| AAACAGGTAGAGCCTGCTGT+TGG | - | chr5_4:61371498-61371517 | Msa0861880:intron | 50.0% | |
| ! | TTGGAGCAGCATGGTTAGCT+TGG | - | chr5_4:61371517-61371536 | Msa0861880:intron | 50.0% |
| TGCCTCACTTAGCAAGGACA+GGG | + | chr5_4:61371752-61371771 | None:intergenic | 50.0% | |
| !! | GTGGATTAGGGATAGTGGGC+AGG | - | chr5_4:61368219-61368238 | Msa0861880:intron | 55.0% |
| !! | ATTAGGGATAGTGGGCAGGG+AGG | - | chr5_4:61368223-61368242 | Msa0861880:intron | 55.0% |
| GGAAAAGAAGCAAGGGCTGC+AGG | - | chr5_4:61369194-61369213 | Msa0861880:intron | 55.0% | |
| CAGGACCTGTCTTAGGTGAC+TGG | - | chr5_4:61369219-61369238 | Msa0861880:intron | 55.0% | |
| GGACCTGTCTTAGGTGACTG+GGG | - | chr5_4:61369221-61369240 | Msa0861880:intron | 55.0% | |
| !! | TTCGGGGTGTTGGGTCACAA+GGG | - | chr5_4:61369790-61369809 | Msa0861880:CDS | 55.0% |
| ATCTGCGCAGGCACTAACTG+CGG | - | chr5_4:61370223-61370242 | Msa0861880:intron | 55.0% | |
| ! | TGGAACGAGTGCTGCAATGC+GGG | + | chr5_4:61370502-61370521 | None:intergenic | 55.0% |
| ! | CTGGAACGAGTGCTGCAATG+CGG | + | chr5_4:61370503-61370522 | None:intergenic | 55.0% |
| ! | AGGCGCTTTTCCGCTTGTCA+TGG | - | chr5_4:61371210-61371229 | Msa0861880:intron | 55.0% |
| ACGCCACCAACCATGACAAG+CGG | + | chr5_4:61371223-61371242 | None:intergenic | 55.0% | |
| AACCATGCTGCTCCAACAGC+AGG | + | chr5_4:61371513-61371532 | None:intergenic | 55.0% | |
| CTCACTTAGCAAGGACAGGG+AGG | + | chr5_4:61371749-61371768 | None:intergenic | 55.0% | |
| CTCCCTGTCCTTGCTAAGTG+AGG | - | chr5_4:61371747-61371766 | Msa0861880:CDS | 55.0% | |
| GTGCCTCACTTAGCAAGGAC+AGG | + | chr5_4:61371753-61371772 | None:intergenic | 55.0% | |
| GCCGTTGCTGCTCTTGCAAG+TGG | - | chr5_4:61369098-61369117 | Msa0861880:intron | 60.0% | |
| CTGCCCCAGTCACCTAAGAC+AGG | + | chr5_4:61369227-61369246 | None:intergenic | 60.0% | |
| CTGTCTTAGGTGACTGGGGC+AGG | - | chr5_4:61369225-61369244 | Msa0861880:intron | 60.0% | |
| CTTGTGACCCAACACCCCGA+AGG | + | chr5_4:61369791-61369810 | None:intergenic | 60.0% | |
| !! | CTTCGGGGTGTTGGGTCACA+AGG | - | chr5_4:61369789-61369808 | Msa0861880:CDS | 60.0% |
| !! | TCGGGGTGTTGGGTCACAAG+GGG | - | chr5_4:61369791-61369810 | Msa0861880:CDS | 60.0% |
| TGGCACCCTAACAGGAGGGA+AGG | - | chr5_4:61370121-61370140 | Msa0861880:CDS | 60.0% | |
| TTGTGCAGAGGCTGGCGATG+AGG | - | chr5_4:61370533-61370552 | Msa0861880:intron | 60.0% | |
| !! | GGTCTAATGGGAAGCACCCC+AGG | + | chr5_4:61371310-61371329 | None:intergenic | 60.0% |
| AGCCTGCTGTTGGAGCAGCA+TGG | - | chr5_4:61371508-61371527 | Msa0861880:intron | 60.0% | |
| GCAGGCGCAGGACCTGTCTT+AGG | - | chr5_4:61369212-61369231 | Msa0861880:intron | 65.0% | |
| GCTGCAATGCGGGCCCAAGA+TGG | + | chr5_4:61370492-61370511 | None:intergenic | 65.0% | |
| GAAGCAAGGGCTGCAGGCGC+AGG | - | chr5_4:61369200-61369219 | Msa0861880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 61366996 | 61371961 | 61366996 | ID=Msa0861880;Name=Msa0861880 |
| chr5_4 | mRNA | 61366996 | 61371961 | 61366996 | ID=Msa0861880-mRNA-1;Parent=Msa0861880;Name=Msa0861880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=180|1|1|1|0.83|0.85|7|377|368 |
| chr5_4 | exon | 61366996 | 61367453 | 61366996 | ID=Msa0861880-mRNA-1:exon:19001;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61367624 | 61367754 | 61367624 | ID=Msa0861880-mRNA-1:exon:19000;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61368315 | 61368484 | 61368315 | ID=Msa0861880-mRNA-1:exon:18999;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61368618 | 61368746 | 61368618 | ID=Msa0861880-mRNA-1:exon:18998;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61369711 | 61369902 | 61369711 | ID=Msa0861880-mRNA-1:exon:18997;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61370089 | 61370236 | 61370089 | ID=Msa0861880-mRNA-1:exon:18996;Parent=Msa0861880-mRNA-1 |
| chr5_4 | exon | 61371526 | 61371961 | 61371526 | ID=Msa0861880-mRNA-1:exon:18995;Parent=Msa0861880-mRNA-1 |
| chr5_4 | five_prime_UTR | 61371782 | 61371961 | 61371782 | ID=Msa0861880-mRNA-1:five_prime_utr;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61371526 | 61371781 | 61371526 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61370089 | 61370236 | 61370089 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61369711 | 61369902 | 61369711 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61368618 | 61368746 | 61368618 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61368315 | 61368484 | 61368315 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61367624 | 61367754 | 61367624 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | CDS | 61367373 | 61367453 | 61367373 | ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1 |
| chr5_4 | three_prime_UTR | 61366996 | 61367372 | 61366996 | ID=Msa0861880-mRNA-1:three_prime_utr;Parent=Msa0861880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
