AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861880 MtrunA17_Chr5g0442201 98.098 368 7 0 1 368 1 368 0.0 739
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861880 AT1G30540.1 72.050 322 89 1 36 357 29 349 1.62e-170 479
Msa0861880 AT1G30540.2 73.897 272 71 0 86 357 7 278 1.07e-147 419
Msa0861880 AT1G30540.3 73.897 272 71 0 86 357 7 278 1.07e-147 419
Msa0861880 AT1G30540.4 72.453 265 72 1 36 300 29 292 6.49e-139 397

Find 118 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCGTCAGCATTGTATT+TGG 0.215745 5_4:+61368663 None:intergenic
TTTAATATTTGCAGTGGATA+TGG 0.250578 5_4:-61368738 Msa0861880:intron
AAGCACCCCAGGAAAGTATT+TGG 0.301399 5_4:+61367639 None:intergenic
TGCATTTCCAAATACTTTCC+TGG 0.311592 5_4:-61367646 Msa0861880:CDS
TATACTGACCTTAGGTCTAA+TGG 0.311823 5_4:+61367615 None:intergenic
AATCTCTTCCTATTCTTTCA+AGG 0.314650 5_4:-61371563 Msa0861880:CDS
ATTCTTTCAAGGGCTGTTGC+TGG 0.326969 5_4:-61371552 Msa0861880:CDS
GCTAAAATCGGCGCAAGAAT+TGG 0.333697 5_4:-61368363 Msa0861880:CDS
TTCTTCTGAGAGATAAAGAT+TGG 0.354119 5_4:+61371929 None:intergenic
GAAGCAAGGGCTGCAGGCGC+AGG 0.355339 5_4:-61369735 Msa0861880:CDS
TTTACTTTACAGCCAAGAAT+TGG 0.355476 5_4:+61367288 None:intergenic
TGCTAATAAAATATAAACTT+TGG 0.357610 5_4:+61367237 None:intergenic
GCAGGCGCAGGACCTGTCTT+AGG 0.366536 5_4:-61369723 Msa0861880:CDS
ATCGTCACATAAATTACTAT+TGG 0.367997 5_4:-61367055 Msa0861880:three_prime_UTR
TTGGATGTACATAAACTATA+TGG 0.379029 5_4:+61367256 None:intergenic
GCATATGGATTTACTGAAGA+TGG 0.381525 5_4:-61369762 Msa0861880:CDS
TCTTCTGCAGAAGAATTGAT+TGG 0.381604 5_4:-61368618 Msa0861880:CDS
TCAAGTGTTAAAGCTGTTGT+AGG 0.385362 5_4:-61368338 Msa0861880:CDS
CAGGACCTGTCTTAGGTGAC+TGG 0.387073 5_4:-61369716 Msa0861880:CDS
GGAGCAATTGATTCTTGATT+CGG 0.389234 5_4:-61371745 Msa0861880:CDS
GGAACAATTGGCAAACTTCA+TGG 0.391537 5_4:-61369816 Msa0861880:CDS
ATACTGACCTTAGGTCTAAT+GGG 0.413875 5_4:+61367616 None:intergenic
AGAATTCTTTGTTGATCTGT+TGG 0.418135 5_4:+61370101 None:intergenic
AAAGAATTCTCAGTTGGCTT+AGG 0.420781 5_4:-61370088 Msa0861880:intron
AAATAAGATCTTGCTAAAAT+CGG 0.422645 5_4:-61368375 Msa0861880:CDS
TTCGGTCCGAGCTGTATGTT+TGG 0.427209 5_4:-61370144 Msa0861880:CDS
CCACACTTTACTCTCATAAG+AGG 0.440062 5_4:+61366986 None:intergenic
ATCTCTTCCTATTCTTTCAA+GGG 0.442969 5_4:-61371562 Msa0861880:CDS
GCATTTCCAAATACTTTCCT+GGG 0.443620 5_4:-61367645 Msa0861880:CDS
ATTCGGAGATGAAGAGGTAT+AGG 0.444303 5_4:-61371728 Msa0861880:CDS
CATGGATGTGTATTAATTGC+TGG 0.450862 5_4:-61369798 Msa0861880:CDS
GCTCTTGCAAGTGGAACAAT+TGG 0.455844 5_4:-61369828 Msa0861880:CDS
TTCTACAGAAATTGCTGCAA+GGG 0.456074 5_4:-61370222 Msa0861880:intron
TGGAACGAGTGCTGCAATGC+GGG 0.460985 5_4:+61368436 None:intergenic
GCAAACACAAAGTGGGATGT+AGG 0.461172 5_4:-61367685 Msa0861880:CDS
TTGGAGCAGCATGGTTAGCT+TGG 0.461737 5_4:-61367418 Msa0861880:CDS
GGACTTACGCAGATCCATCT+TGG 0.461737 5_4:-61368460 Msa0861880:CDS
CTGTCTTAGGTGACTGGGGC+AGG 0.466961 5_4:-61369710 Msa0861880:intron
AGACTTGGATTGTGCGGTAA+AGG 0.467200 5_4:-61368314 Msa0861880:intron
TTAGCAAATGGTACATTGGT+AGG 0.467427 5_4:-61367220 Msa0861880:three_prime_UTR
GACTTACGCAGATCCATCTT+GGG 0.471146 5_4:-61368459 Msa0861880:CDS
GGCACAGGAACCATTGCATA+TGG 0.473099 5_4:-61369777 Msa0861880:CDS
CTTCTGCAGAAGAATTGATT+GGG 0.475265 5_4:-61368617 Msa0861880:intron
TCTAATCATAATAGTGTTGG+AGG 0.480939 5_4:-61371525 Msa0861880:intron
GGTCTAATGGGAAGCACCCC+AGG 0.482189 5_4:+61367628 None:intergenic
GGAAAAGAAGCAAGGGCTGC+AGG 0.483573 5_4:-61369741 Msa0861880:CDS
GCTGTATGTTTGGCTGTATC+CGG 0.484239 5_4:-61370134 Msa0861880:CDS
TTTCCGCTTGTCATGGTTGG+TGG 0.487092 5_4:-61367718 Msa0861880:CDS
GCAACAGCCCTTGAAAGAAT+AGG 0.488351 5_4:+61371555 None:intergenic
AAAGCTGTTGTAGGGAGACT+TGG 0.491123 5_4:-61368329 Msa0861880:CDS
AGAATCAATTGCTCCTTCTC+CGG 0.496172 5_4:+61371753 None:intergenic
ACATATAACCTCACATCACT+TGG 0.500294 5_4:+61369870 None:intergenic
TCTGCACAAGATACTACAAC+TGG 0.500794 5_4:+61368416 None:intergenic
AGGACCTGTCTTAGGTGACT+GGG 0.506306 5_4:-61369715 Msa0861880:CDS
CAATGTTGACGGAGAAGAAA+GGG 0.507872 5_4:+61371815 None:intergenic
GTGCCTCACTTAGCAAGGAC+AGG 0.508933 5_4:+61367185 None:intergenic
GCCGTTGCTGCTCTTGCAAG+TGG 0.509723 5_4:-61369837 Msa0861880:CDS
TGCTCTAATCATAATAGTGT+TGG 0.509813 5_4:-61371528 Msa0861880:CDS
TATGGTTACACTTACACCTC+TGG 0.510270 5_4:+61367092 None:intergenic
GTAGTATCTTGTGCAGAGGC+TGG 0.511756 5_4:-61368410 Msa0861880:CDS
AACCATGCTGCTCCAACAGC+AGG 0.514568 5_4:+61367425 None:intergenic
TCTTCTGAGAGATAAAGATT+GGG 0.516082 5_4:+61371930 None:intergenic
GTGTGGTTCAAAACGATCTT+CGG 0.516505 5_4:-61370162 Msa0861880:CDS
ATCAACAAAGAATTCTCAGT+TGG 0.518161 5_4:-61370094 Msa0861880:CDS
GGAAACATTAGAGCAAGTTA+TGG 0.525125 5_4:-61370201 Msa0861880:CDS
GGTAACTATTTACACAAGCA+AGG 0.526678 5_4:+61367113 None:intergenic
GGTATAGGAATGGTGAAACA+TGG 0.529685 5_4:-61371713 Msa0861880:CDS
CAAACACAAAGTGGGATGTA+GGG 0.530904 5_4:-61367684 Msa0861880:CDS
AACAATGTTTCTGTCTCAGA+TGG 0.535011 5_4:-61371672 Msa0861880:CDS
TCCACTTGCAAGAGCAGCAA+CGG 0.536786 5_4:+61369836 None:intergenic
GCTGCAATGCGGGCCCAAGA+TGG 0.543762 5_4:+61368446 None:intergenic
TTTATTAGCAAATGGTACAT+TGG 0.546696 5_4:-61367224 Msa0861880:three_prime_UTR
TCAATGTTGACGGAGAAGAA+AGG 0.547686 5_4:+61371814 None:intergenic
AATAAGTATCTGAATGATGC+CGG 0.548052 5_4:-61371772 Msa0861880:exon
CTCCCTGTCCTTGCTAAGTG+AGG 0.554977 5_4:-61367188 Msa0861880:three_prime_UTR
TTCTTTGTTGATCTGTTGGA+TGG 0.558478 5_4:+61370105 None:intergenic
GTAACTATTTACACAAGCAA+GGG 0.563627 5_4:+61367114 None:intergenic
GGTGCTTCCCATTAGACCTA+AGG 0.571799 5_4:-61367623 Msa0861880:intron
TTCTTGATTCGGAGATGAAG+AGG 0.573073 5_4:-61371734 Msa0861880:CDS
TTCAGTAAATCCATATGCAA+TGG 0.574987 5_4:+61369767 None:intergenic
CAAGTGTTAAAGCTGTTGTA+GGG 0.578022 5_4:-61368337 Msa0861880:CDS
TATCTGAATGATGCCGGAGA+AGG 0.578412 5_4:-61371766 Msa0861880:exon
ACTGACAATTCATGATGAAG+TGG 0.578513 5_4:-61367355 Msa0861880:exon
GCAGATGCGCTTTCAAAGTG+TGG 0.579158 5_4:-61370179 Msa0861880:CDS
AGTTGTAGTATCTTGTGCAG+AGG 0.585349 5_4:-61368414 Msa0861880:CDS
CGATAAAGACAACTCTCGTA+TGG 0.585945 5_4:+61367074 None:intergenic
GAGATGAAGAGGTATAGGAA+TGG 0.586169 5_4:-61371723 Msa0861880:CDS
TGGATATGGAATATCTGCGC+AGG 0.586238 5_4:-61368724 Msa0861880:CDS
GTATAGGAATGGTGAAACAT+GGG 0.588471 5_4:-61371712 Msa0861880:CDS
CTGCCCCAGTCACCTAAGAC+AGG 0.590138 5_4:+61369711 None:intergenic
TTTCTACAGAAATTGCTGCA+AGG 0.590652 5_4:-61370223 Msa0861880:intron
TTCTTGAAGCAAACACAAAG+TGG 0.592334 5_4:-61367693 Msa0861880:CDS
CTGAAGATGGAAAAGAAGCA+AGG 0.600282 5_4:-61369749 Msa0861880:CDS
ACGCCACCAACCATGACAAG+CGG 0.606206 5_4:+61367715 None:intergenic
TGAAGATGGAAAAGAAGCAA+GGG 0.610105 5_4:-61369748 Msa0861880:CDS
AAACTGTGCCTCACTTAGCA+AGG 0.617081 5_4:+61367180 None:intergenic
ATAGAAGCACATGATGGTCG+TGG 0.617860 5_4:-61368687 Msa0861880:CDS
ATCTGTTGGATGGTTAACAC+CGG 0.625271 5_4:+61370115 None:intergenic
TCTTGAAGCAAACACAAAGT+GGG 0.629952 5_4:-61367692 Msa0861880:CDS
AAACAGGTAGAGCCTGCTGT+TGG 0.632953 5_4:-61367437 Msa0861880:intron
CATTTCCAAATACTTTCCTG+GGG 0.634649 5_4:-61367644 Msa0861880:CDS
ACTTCATCATGAATTGTCAG+TGG 0.636732 5_4:+61367357 None:intergenic
TTTCATGAAAGAATATAACA+AGG 0.640802 5_4:-61367390 Msa0861880:CDS
GCGGTAATAGAAGCACATGA+TGG 0.649285 5_4:-61368693 Msa0861880:CDS
CTTGTGTAAATAGTTACCAG+AGG 0.649586 5_4:-61367108 Msa0861880:three_prime_UTR
TGTGTATTAATTGCTGGCAC+AGG 0.650395 5_4:-61369792 Msa0861880:CDS
CATACAAATACAAACAGTTG+AGG 0.651810 5_4:+61371620 None:intergenic
ATATATTTCCAAGTGATGTG+AGG 0.653488 5_4:-61369878 Msa0861880:CDS
AGCCTGCTGTTGGAGCAGCA+TGG 0.659631 5_4:-61367427 Msa0861880:CDS
ATCTGCGCAGGCACTAACTG+CGG 0.661132 5_4:-61368712 Msa0861880:CDS
TGCCTCACTTAGCAAGGACA+GGG 0.661481 5_4:+61367186 None:intergenic
TTGTGCAGAGGCTGGCGATG+AGG 0.669812 5_4:-61368402 Msa0861880:CDS
ATACAGCCAAACATACAGCT+CGG 0.679468 5_4:+61370138 None:intergenic
CTGGAACGAGTGCTGCAATG+CGG 0.681899 5_4:+61368435 None:intergenic
TGACGGAGAAGAAAGGGACA+AGG 0.687042 5_4:+61371821 None:intergenic
GTAGGGAGACTTGGATTGTG+CGG 0.692237 5_4:-61368320 Msa0861880:CDS
GGACCTGTCTTAGGTGACTG+GGG 0.694401 5_4:-61369714 Msa0861880:CDS
CTCACTTAGCAAGGACAGGG+AGG 0.703456 5_4:+61367189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATTACTTTCATT+TGG - chr5_4:61370101-61370120 Msa0861880:CDS 10.0%
!! TTAAATTTAAAAGAAATTGA+TGG - chr5_4:61371097-61371116 Msa0861880:intron 10.0%
!!! ATAGAATGAAATTTTAAATT+TGG - chr5_4:61371467-61371486 Msa0861880:intron 10.0%
!! AAAAATATTGATAAAAAGAA+AGG - chr5_4:61371613-61371632 Msa0861880:CDS 10.0%
!! ATTATGTAGTAATACTTATT+TGG - chr5_4:61367522-61367541 Msa0861880:intron 15.0%
!! ATGTAAGAAATTCATAATTT+AGG - chr5_4:61367964-61367983 Msa0861880:intron 15.0%
!! AACTTATAGTTTATATGAAA+AGG + chr5_4:61369451-61369470 None:intergenic 15.0%
!!! GAAAGTAATAATTTTTACAT+TGG + chr5_4:61370098-61370117 None:intergenic 15.0%
!! TGCTAATAAAATATAAACTT+TGG + chr5_4:61371701-61371720 None:intergenic 15.0%
!!! GTTTATATTTTATTAGCAAA+TGG - chr5_4:61371703-61371722 Msa0861880:CDS 15.0%
!!! AGAATTTTGAATGAATGATT+AGG - chr5_4:61367552-61367571 Msa0861880:intron 20.0%
!! TTGTTTACATTAATAGTGTT+TGG - chr5_4:61368157-61368176 Msa0861880:intron 20.0%
!! TACAAAGATTTGTCAAATAA+CGG - chr5_4:61368327-61368346 Msa0861880:CDS 20.0%
!!! CATTTGTTTTATATTGTAGA+AGG - chr5_4:61368535-61368554 Msa0861880:intron 20.0%
!! AAAAGGTAACATCAATTTAT+AGG + chr5_4:61369685-61369704 None:intergenic 20.0%
!! ATAGATTTGAAGAAAGAAAA+AGG + chr5_4:61369702-61369721 None:intergenic 20.0%
!! AAAAATGGATATAATCAAGT+TGG + chr5_4:61370162-61370181 None:intergenic 20.0%
!!! TCAAAATGGCTTTAAATTAT+AGG + chr5_4:61370407-61370426 None:intergenic 20.0%
!! AAATAAGATCTTGCTAAAAT+CGG - chr5_4:61370560-61370579 Msa0861880:intron 20.0%
!! TTTACCTCATATTAATAGTA+TGG - chr5_4:61371033-61371052 Msa0861880:intron 20.0%
!! TTATCCATACTATTAATATG+AGG + chr5_4:61371040-61371059 None:intergenic 20.0%
!!! AAATTTTGAAGTAATTGACT+TGG - chr5_4:61371058-61371077 Msa0861880:intron 20.0%
!!! TGACTGATATTATGTAATTT+TGG - chr5_4:61371177-61371196 Msa0861880:intron 20.0%
!! TTTCATGAAAGAATATAACA+AGG - chr5_4:61371545-61371564 Msa0861880:CDS 20.0%
! AAGAGAAAAATCAATGTTGA+CGG + chr5_4:61367134-61367153 None:intergenic 25.0%
! TGAGAAAAATGAATGATCAT+AGG + chr5_4:61367341-61367360 None:intergenic 25.0%
!!! CATTCATTCTCTCTATTTTT+TGG - chr5_4:61367441-61367460 Msa0861880:intron 25.0%
! TTATACTAAACAGCTTATCA+CGG + chr5_4:61367728-61367747 None:intergenic 25.0%
! TGATAAGCTGTTTAGTATAA+AGG - chr5_4:61367728-61367747 Msa0861880:CDS 25.0%
! TATAAAGGTTTGTCATATAG+TGG - chr5_4:61367743-61367762 Msa0861880:intron 25.0%
! GTGATTGATTGTTTAATACT+AGG - chr5_4:61367851-61367870 Msa0861880:intron 25.0%
!! TTAATACTAGGAGAATTTTG+AGG - chr5_4:61367863-61367882 Msa0861880:intron 25.0%
!!! GAAAAAGAACTTGTTTTTAC+TGG - chr5_4:61367916-61367935 Msa0861880:intron 25.0%
! TAGGAAAATCTGTTATGTTA+TGG - chr5_4:61367983-61368002 Msa0861880:intron 25.0%
!!! AGTTTTGATTTTTTGTTTCC+TGG - chr5_4:61368091-61368110 Msa0861880:intron 25.0%
!!! GTTTTGATTTTTTGTTTCCT+GGG - chr5_4:61368092-61368111 Msa0861880:intron 25.0%
! TAATCCACAAGAAAAAAAAG+GGG + chr5_4:61368207-61368226 None:intergenic 25.0%
! CTAATCCACAAGAAAAAAAA+GGG + chr5_4:61368208-61368227 None:intergenic 25.0%
!!! CTTTTTTTTCTTGTGGATTA+GGG - chr5_4:61368207-61368226 Msa0861880:intron 25.0%
! TATTGCAGAACAATAACAAT+TGG + chr5_4:61368297-61368316 None:intergenic 25.0%
! CTAAATGATGAATTTCTAAC+AGG + chr5_4:61368588-61368607 None:intergenic 25.0%
! CTGTTAGAAATTCATCATTT+AGG - chr5_4:61368586-61368605 Msa0861880:intron 25.0%
! ACTTAAGAGTAATATTAGCA+GGG + chr5_4:61368926-61368945 None:intergenic 25.0%
! TACTTAAGAGTAATATTAGC+AGG + chr5_4:61368927-61368946 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr5_4:61369345-61369364 None:intergenic 25.0%
! TAAGCTATCTCTATAACAAA+AGG - chr5_4:61369410-61369429 Msa0861880:intron 25.0%
! ACATCAATCATAATATGACT+AGG - chr5_4:61369743-61369762 Msa0861880:CDS 25.0%
!!! ATGACTAGGAATTGTTTTTT+TGG - chr5_4:61369757-61369776 Msa0861880:CDS 25.0%
!!! TTTTTTGGAAAAAGAACCTT+CGG - chr5_4:61369772-61369791 Msa0861880:CDS 25.0%
!! TGAATCTTATTGGATGTTTT+TGG + chr5_4:61369954-61369973 None:intergenic 25.0%
! CTAACAAAACTGAATCTTAT+TGG + chr5_4:61369964-61369983 None:intergenic 25.0%
!!! CAATAAGATTCAGTTTTGTT+AGG - chr5_4:61369962-61369981 Msa0861880:intron 25.0%
! TTTACATTGGATGAAAATGA+GGG + chr5_4:61370085-61370104 None:intergenic 25.0%
!! TTTTACATTGGATGAAAATG+AGG + chr5_4:61370086-61370105 None:intergenic 25.0%
! GCAAAAATGTCAACAAAAAA+TGG + chr5_4:61370177-61370196 None:intergenic 25.0%
!! TTTTGCTTTAATATTTGCAG+TGG - chr5_4:61370191-61370210 Msa0861880:CDS 25.0%
! TTTAATATTTGCAGTGGATA+TGG - chr5_4:61370197-61370216 Msa0861880:CDS 25.0%
! ATTACATGTAGATCTTAATG+TGG - chr5_4:61370787-61370806 Msa0861880:intron 25.0%
!! AAATTACGATTTTTACTGCT+TGG - chr5_4:61370967-61370986 Msa0861880:intron 25.0%
! AATTTAAATGAATGCTCTAG+AGG + chr5_4:61371084-61371103 None:intergenic 25.0%
! TACACAAATCATCATCATAT+AGG + chr5_4:61371153-61371172 None:intergenic 25.0%
!! AAATTTGGTTTATTGCAAAC+AGG - chr5_4:61371482-61371501 Msa0861880:intron 25.0%
! TTGGATGTACATAAACTATA+TGG + chr5_4:61371682-61371701 None:intergenic 25.0%
! TTTATTAGCAAATGGTACAT+TGG - chr5_4:61371711-61371730 Msa0861880:CDS 25.0%
! ATCGTCACATAAATTACTAT+TGG - chr5_4:61371880-61371899 Msa0861880:five_prime_UTR 25.0%
! TCTTCTGAGAGATAAAGATT+GGG + chr5_4:61367008-61367027 None:intergenic 30.0%
! TTCTTCTGAGAGATAAAGAT+TGG + chr5_4:61367009-61367028 None:intergenic 30.0%
AGAAAAAGAGATTGATACAG+TGG - chr5_4:61367025-61367044 Msa0861880:three_prime_UTR 30.0%
AATAAGTATCTGAATGATGC+CGG - chr5_4:61367163-61367182 Msa0861880:three_prime_UTR 30.0%
CATACAAATACAAACAGTTG+AGG + chr5_4:61367318-61367337 None:intergenic 30.0%
AATCTCTTCCTATTCTTTCA+AGG - chr5_4:61367372-61367391 Msa0861880:exon 30.0%
ATCTCTTCCTATTCTTTCAA+GGG - chr5_4:61367373-61367392 Msa0861880:CDS 30.0%
TGCTCTAATCATAATAGTGT+TGG - chr5_4:61367407-61367426 Msa0861880:CDS 30.0%
! TCTAATCATAATAGTGTTGG+AGG - chr5_4:61367410-61367429 Msa0861880:CDS 30.0%
GTACATTGATAAACCTTGTT+TGG - chr5_4:61367579-61367598 Msa0861880:intron 30.0%
!!! TTCAATTCCCCCTTTTTTTT+TGG - chr5_4:61367618-61367637 Msa0861880:intron 30.0%
ATCCCCAATCCAAAAAAAAA+GGG + chr5_4:61367630-61367649 None:intergenic 30.0%
TATCCCCAATCCAAAAAAAA+AGG + chr5_4:61367631-61367650 None:intergenic 30.0%
TACCATTGTTTAGTCCATAT+TGG - chr5_4:61368006-61368025 Msa0861880:intron 30.0%
ATCGATAATAACCTCCAATA+TGG + chr5_4:61368023-61368042 None:intergenic 30.0%
! ATCGATTCTCTCTGTTATAT+TGG - chr5_4:61368037-61368056 Msa0861880:intron 30.0%
!!! TTTTTGTTTTCTGGGTTTGT+TGG - chr5_4:61368127-61368146 Msa0861880:intron 30.0%
!!! TTTTGTTTTCTGGGTTTGTT+GGG - chr5_4:61368128-61368147 Msa0861880:intron 30.0%
AATCCACAAGAAAAAAAAGG+GGG + chr5_4:61368206-61368225 None:intergenic 30.0%
CCTAATCCACAAGAAAAAAA+AGG + chr5_4:61368209-61368228 None:intergenic 30.0%
!!! CCTTTTTTTTCTTGTGGATT+AGG - chr5_4:61368206-61368225 Msa0861880:intron 30.0%
GATTCAATGTTGTCAAATAG+TGG - chr5_4:61368245-61368264 Msa0861880:intron 30.0%
! CGATACACTATTTTGTACAA+AGG - chr5_4:61368356-61368375 Msa0861880:CDS 30.0%
TACAATACTAGGAGAATTTG+AGG - chr5_4:61368474-61368493 Msa0861880:intron 30.0%
TAGGAAAAACTGCTATGTTA+TGG - chr5_4:61368605-61368624 Msa0861880:intron 30.0%
ATCATATTTGTCCTAAACGA+TGG + chr5_4:61368633-61368652 None:intergenic 30.0%
AAAATGAAGATCACATTGCA+AGG - chr5_4:61368654-61368673 Msa0861880:CDS 30.0%
AGCAATTTCTGTAGAAAAAG+TGG + chr5_4:61368709-61368728 None:intergenic 30.0%
AGAATTCTTTGTTGATCTGT+TGG + chr5_4:61368837-61368856 None:intergenic 30.0%
ATCAACAAAGAATTCTCAGT+TGG - chr5_4:61368841-61368860 Msa0861880:intron 30.0%
TTGCTCTATATTACTGTATC+TGG - chr5_4:61368870-61368889 Msa0861880:intron 30.0%
! GACTTATTTGTGCATTTTTG+TGG - chr5_4:61368968-61368987 Msa0861880:intron 30.0%
ATATATTTCCAAGTGATGTG+AGG - chr5_4:61369057-61369076 Msa0861880:intron 30.0%
TTCAGTAAATCCATATGCAA+TGG + chr5_4:61369171-61369190 None:intergenic 30.0%
!! GTTGTTTTCATAAGCAATCA+TGG - chr5_4:61369468-61369487 Msa0861880:intron 30.0%
! AAAAAAGAGCTAGTTTGGAT+TGG + chr5_4:61369585-61369604 None:intergenic 30.0%
CATGTAAAAAAGAGCTAGTT+TGG + chr5_4:61369590-61369609 None:intergenic 30.0%
TTTACATGAAAATGAGCTTC+TGG - chr5_4:61369602-61369621 Msa0861880:intron 30.0%
!! TTTTTGGAAAAAGAACCTTC+GGG - chr5_4:61369773-61369792 Msa0861880:CDS 30.0%
! TGTTAGGTTTGCAGTATTTT+TGG - chr5_4:61369978-61369997 Msa0861880:intron 30.0%
!!! ATGTTTTAAGGTTTTGGGTA+GGG + chr5_4:61370025-61370044 None:intergenic 30.0%
!!! AATGTTTTAAGGTTTTGGGT+AGG + chr5_4:61370026-61370045 None:intergenic 30.0%
TACCCAAAACCTTAAAACAT+TGG - chr5_4:61370025-61370044 Msa0861880:intron 30.0%
ACCCAAAACCTTAAAACATT+GGG - chr5_4:61370026-61370045 Msa0861880:intron 30.0%
!!! ACCCAATGTTTTAAGGTTTT+GGG + chr5_4:61370030-61370049 None:intergenic 30.0%
!!! TACCCAATGTTTTAAGGTTT+TGG + chr5_4:61370031-61370050 None:intergenic 30.0%
ACCTTAAAACATTGGGTATA+CGG - chr5_4:61370033-61370052 Msa0861880:intron 30.0%
! AGTAGTATTTTACAAACGCT+TGG - chr5_4:61370290-61370309 Msa0861880:intron 30.0%
!! AATTTAAAGCCATTTTGAGC+TGG - chr5_4:61370409-61370428 Msa0861880:intron 30.0%
!! TGAAGTAAGATTTTGTTGTG+AGG + chr5_4:61370751-61370770 None:intergenic 30.0%
ACTGACATTTACAATTGAAG+GGG + chr5_4:61370938-61370957 None:intergenic 30.0%
CACTGACATTTACAATTGAA+GGG + chr5_4:61370939-61370958 None:intergenic 30.0%
TAATATGAGGTAAAGTTTGC+AGG + chr5_4:61371027-61371046 None:intergenic 30.0%
!! GTAATTTTGGCAGATGAAAA+AGG - chr5_4:61371190-61371209 Msa0861880:intron 30.0%
TCATTCTATGCTAAAGATTC+TGG + chr5_4:61371456-61371475 None:intergenic 30.0%
GAAGTGAAAAATCCAATTCT+TGG - chr5_4:61371635-61371654 Msa0861880:CDS 30.0%
TTTACTTTACAGCCAAGAAT+TGG + chr5_4:61371650-61371669 None:intergenic 30.0%
GTAACTATTTACACAAGCAA+GGG + chr5_4:61371824-61371843 None:intergenic 30.0%
! GGAGCAATTGATTCTTGATT+CGG - chr5_4:61367190-61367209 Msa0861880:three_prime_UTR 35.0%
GTATAGGAATGGTGAAACAT+GGG - chr5_4:61367223-61367242 Msa0861880:three_prime_UTR 35.0%
! AACAATGTTTCTGTCTCAGA+TGG - chr5_4:61367263-61367282 Msa0861880:three_prime_UTR 35.0%
AGTCAACACTAAACCAAACA+AGG + chr5_4:61367595-61367614 None:intergenic 35.0%
!!! TTCCCCCTTTTTTTTTGGAT+TGG - chr5_4:61367623-61367642 Msa0861880:intron 35.0%
!!! TCCCCCTTTTTTTTTGGATT+GGG - chr5_4:61367624-61367643 Msa0861880:CDS 35.0%
TCCCCAATCCAAAAAAAAAG+GGG + chr5_4:61367629-61367648 None:intergenic 35.0%
!!! TTTTTTTGGATTGGGGATAG+TGG - chr5_4:61367632-61367651 Msa0861880:CDS 35.0%
!!! TTTTTTGGATTGGGGATAGT+GGG - chr5_4:61367633-61367652 Msa0861880:CDS 35.0%
AAACAATCAATCACAGATCG+CGG + chr5_4:61367845-61367864 None:intergenic 35.0%
!!! AATTTTGAGGATGCTGGTTT+TGG - chr5_4:61367876-61367895 Msa0861880:intron 35.0%
!!! CTTGTTTTTACTGGAGAAAG+TGG - chr5_4:61367925-61367944 Msa0861880:intron 35.0%
! CTCCAATATGGACTAAACAA+TGG + chr5_4:61368011-61368030 None:intergenic 35.0%
CATTGTTTAGTCCATATTGG+AGG - chr5_4:61368009-61368028 Msa0861880:intron 35.0%
!!! GGCTGTTTGACTTCATTTTT+TGG - chr5_4:61368058-61368077 Msa0861880:intron 35.0%
!! TTTTTGTTTCCTGGGTTTGT+TGG - chr5_4:61368100-61368119 Msa0861880:intron 35.0%
!! TTTTGTTTCCTGGGTTTGTT+GGG - chr5_4:61368101-61368120 Msa0861880:intron 35.0%
!!! TTGGGGTGTTTTTGTTTTCT+GGG - chr5_4:61368119-61368138 Msa0861880:intron 35.0%
!!! TTTGTTTTCTGGGTTTGTTG+GGG - chr5_4:61368129-61368148 Msa0861880:intron 35.0%
!!! ATTCCCCCTTTTTTTTCTTG+TGG - chr5_4:61368200-61368219 Msa0861880:intron 35.0%
TTGTAACTAATCGCAGATTG+TGG + chr5_4:61368459-61368478 None:intergenic 35.0%
! CTGCGATTAGTTACAATACT+AGG - chr5_4:61368463-61368482 Msa0861880:CDS 35.0%
ATGTTATGGTACCATCGTTT+AGG - chr5_4:61368619-61368638 Msa0861880:CDS 35.0%
TTTCTACAGAAATTGCTGCA+AGG - chr5_4:61368712-61368731 Msa0861880:CDS 35.0%
TTCTACAGAAATTGCTGCAA+GGG - chr5_4:61368713-61368732 Msa0861880:CDS 35.0%
GGAAACATTAGAGCAAGTTA+TGG - chr5_4:61368734-61368753 Msa0861880:intron 35.0%
TTCTTTGTTGATCTGTTGGA+TGG + chr5_4:61368833-61368852 None:intergenic 35.0%
! AAAGAATTCTCAGTTGGCTT+AGG - chr5_4:61368847-61368866 Msa0861880:intron 35.0%
!! TGTTTCTCTGCTACTTTAAC+AGG - chr5_4:61369033-61369052 Msa0861880:intron 35.0%
!! GTTTCTCTGCTACTTTAACA+GGG - chr5_4:61369034-61369053 Msa0861880:intron 35.0%
ACATATAACCTCACATCACT+TGG + chr5_4:61369068-61369087 None:intergenic 35.0%
CATGGATGTGTATTAATTGC+TGG - chr5_4:61369137-61369156 Msa0861880:intron 35.0%
GCATATGGATTTACTGAAGA+TGG - chr5_4:61369173-61369192 Msa0861880:intron 35.0%
TGAAGATGGAAAAGAAGCAA+GGG - chr5_4:61369187-61369206 Msa0861880:intron 35.0%
TGCTAAGAAATAGAGAGAGA+GGG + chr5_4:61369291-61369310 None:intergenic 35.0%
!!! GAAAGCATTTTCCTGCTAAT+TGG + chr5_4:61369659-61369678 None:intergenic 35.0%
!! TTTTGGAAAAAGAACCTTCG+GGG - chr5_4:61369774-61369793 Msa0861880:CDS 35.0%
GAGTAACCACTTAAGTGATT+TGG - chr5_4:61369851-61369870 Msa0861880:CDS 35.0%
CACATCTACACTCAAAACTA+GGG - chr5_4:61369878-61369897 Msa0861880:CDS 35.0%
ACATCTACACTCAAAACTAG+GGG - chr5_4:61369879-61369898 Msa0861880:CDS 35.0%
!!! TTTTTTGCCGCAAAATCGAT+CGG + chr5_4:61369922-61369941 None:intergenic 35.0%
!!! TGTTTTAAGGTTTTGGGTAG+GGG + chr5_4:61370024-61370043 None:intergenic 35.0%
CCTTAAAACATTGGGTATAC+GGG - chr5_4:61370034-61370053 Msa0861880:intron 35.0%
GTTGAGCAACATATAAGTGA+AGG + chr5_4:61370061-61370080 None:intergenic 35.0%
TCTTCTGCAGAAGAATTGAT+TGG - chr5_4:61370317-61370336 Msa0861880:intron 35.0%
CTTCTGCAGAAGAATTGATT+GGG - chr5_4:61370318-61370337 Msa0861880:intron 35.0%
TCAAGTGTTAAAGCTGTTGT+AGG - chr5_4:61370597-61370616 Msa0861880:intron 35.0%
CAAGTGTTAAAGCTGTTGTA+GGG - chr5_4:61370598-61370617 Msa0861880:intron 35.0%
! GCACTGACATTTACAATTGA+AGG + chr5_4:61370940-61370959 None:intergenic 35.0%
TTCTTGAAGCAAACACAAAG+TGG - chr5_4:61371242-61371261 Msa0861880:intron 35.0%
TCTTGAAGCAAACACAAAGT+GGG - chr5_4:61371243-61371262 Msa0861880:intron 35.0%
TGCATTTCCAAATACTTTCC+TGG - chr5_4:61371289-61371308 Msa0861880:intron 35.0%
GCATTTCCAAATACTTTCCT+GGG - chr5_4:61371290-61371309 Msa0861880:intron 35.0%
CATTTCCAAATACTTTCCTG+GGG - chr5_4:61371291-61371310 Msa0861880:intron 35.0%
ATACTGACCTTAGGTCTAAT+GGG + chr5_4:61371322-61371341 None:intergenic 35.0%
TATACTGACCTTAGGTCTAA+TGG + chr5_4:61371323-61371342 None:intergenic 35.0%
TGACGATATATACTGACCTT+AGG + chr5_4:61371331-61371350 None:intergenic 35.0%
ATTTACTAAGCCTCTAAGCA+AGG + chr5_4:61371425-61371444 None:intergenic 35.0%
ACTTCATCATGAATTGTCAG+TGG + chr5_4:61371581-61371600 None:intergenic 35.0%
ACTGACAATTCATGATGAAG+TGG - chr5_4:61371580-61371599 Msa0861880:CDS 35.0%
TTAGCAAATGGTACATTGGT+AGG - chr5_4:61371715-61371734 Msa0861880:CDS 35.0%
! TTACACAAGCAAGGGTTTTA+AGG + chr5_4:61371816-61371835 None:intergenic 35.0%
GGTAACTATTTACACAAGCA+AGG + chr5_4:61371825-61371844 None:intergenic 35.0%
CTTGTGTAAATAGTTACCAG+AGG - chr5_4:61371827-61371846 Msa0861880:five_prime_UTR 35.0%
CAATGTTGACGGAGAAGAAA+GGG + chr5_4:61367123-61367142 None:intergenic 40.0%
TCAATGTTGACGGAGAAGAA+AGG + chr5_4:61367124-61367143 None:intergenic 40.0%
AGAATCAATTGCTCCTTCTC+CGG + chr5_4:61367185-61367204 None:intergenic 40.0%
!! TTCTTGATTCGGAGATGAAG+AGG - chr5_4:61367201-61367220 Msa0861880:three_prime_UTR 40.0%
! ATTCGGAGATGAAGAGGTAT+AGG - chr5_4:61367207-61367226 Msa0861880:three_prime_UTR 40.0%
! GAGATGAAGAGGTATAGGAA+TGG - chr5_4:61367212-61367231 Msa0861880:three_prime_UTR 40.0%
GGTATAGGAATGGTGAAACA+TGG - chr5_4:61367222-61367241 Msa0861880:three_prime_UTR 40.0%
! TGTCTCAGATGGTGTTTTGT+TGG - chr5_4:61367274-61367293 Msa0861880:three_prime_UTR 40.0%
!! GTCTCAGATGGTGTTTTGTT+GGG - chr5_4:61367275-61367294 Msa0861880:three_prime_UTR 40.0%
!! GGTGTTTTGTTGGGTTTAGA+TGG - chr5_4:61367284-61367303 Msa0861880:three_prime_UTR 40.0%
!! GTTTTGTTGGGTTTAGATGG+TGG - chr5_4:61367287-61367306 Msa0861880:three_prime_UTR 40.0%
CCCCAATCCAAAAAAAAAGG+GGG + chr5_4:61367628-61367647 None:intergenic 40.0%
!!! CCCCCTTTTTTTTTGGATTG+GGG - chr5_4:61367625-61367644 Msa0861880:CDS 40.0%
TGGGTGGGAAGAATTCAAAT+AGG - chr5_4:61367652-61367671 Msa0861880:CDS 40.0%
GGGTGGGAAGAATTCAAATA+GGG - chr5_4:61367653-61367672 Msa0861880:CDS 40.0%
GGTGGGAAGAATTCAAATAG+GGG - chr5_4:61367654-61367673 Msa0861880:CDS 40.0%
!! TAGGAGAATTTTGAGGATGC+TGG - chr5_4:61367870-61367889 Msa0861880:intron 40.0%
!!! TGGTTTTGGCTTAGGCAATT+TGG - chr5_4:61367890-61367909 Msa0861880:intron 40.0%
!!! TTTTGGCTTAGGCAATTTGG+TGG - chr5_4:61367893-61367912 Msa0861880:intron 40.0%
! TTTGGCTTAGGCAATTTGGT+GGG - chr5_4:61367894-61367913 Msa0861880:intron 40.0%
!! TTTGTTTCCTGGGTTTGTTG+GGG - chr5_4:61368102-61368121 Msa0861880:intron 40.0%
!!! GTTGGGGTGTTTTTGTTTTC+TGG - chr5_4:61368118-61368137 Msa0861880:intron 40.0%
!! TTCTTGTGGATTAGGGATAG+TGG - chr5_4:61368214-61368233 Msa0861880:intron 40.0%
!! TCTTGTGGATTAGGGATAGT+GGG - chr5_4:61368215-61368234 Msa0861880:intron 40.0%
CTAGGAGAATTTGAGGATGT+TGG - chr5_4:61368481-61368500 Msa0861880:intron 40.0%
GAATTTGAGGATGTTGGTCA+TGG - chr5_4:61368487-61368506 Msa0861880:intron 40.0%
GTGTGGTTCAAAACGATCTT+CGG - chr5_4:61368773-61368792 Msa0861880:intron 40.0%
ATACAGCCAAACATACAGCT+CGG + chr5_4:61368800-61368819 None:intergenic 40.0%
ATCTGTTGGATGGTTAACAC+CGG + chr5_4:61368823-61368842 None:intergenic 40.0%
GGAACAATTGGCAAACTTCA+TGG - chr5_4:61369119-61369138 Msa0861880:intron 40.0%
TGTGTATTAATTGCTGGCAC+AGG - chr5_4:61369143-61369162 Msa0861880:intron 40.0%
CTGAAGATGGAAAAGAAGCA+AGG - chr5_4:61369186-61369205 Msa0861880:intron 40.0%
GTGCTAAGAAATAGAGAGAG+AGG + chr5_4:61369292-61369311 None:intergenic 40.0%
TGTTTATCCAAACAAGGCCA+AGG + chr5_4:61369339-61369358 None:intergenic 40.0%
AGACTGAGAATCCAATTAGC+AGG - chr5_4:61369645-61369664 Msa0861880:intron 40.0%
ACTTGAGAGATCTCGACATT+GGG - chr5_4:61369824-61369843 Msa0861880:CDS 40.0%
TGGTGTCCAAATCACTTAAG+TGG + chr5_4:61369860-61369879 None:intergenic 40.0%
!!! CCTAGTTTTGAGTGTAGATG+TGG + chr5_4:61369880-61369899 None:intergenic 40.0%
CCACATCTACACTCAAAACT+AGG - chr5_4:61369877-61369896 Msa0861880:CDS 40.0%
CATCTACACTCAAAACTAGG+GGG - chr5_4:61369880-61369899 Msa0861880:CDS 40.0%
!! ATCAGTTCCGATCGATTTTG+CGG - chr5_4:61369912-61369931 Msa0861880:intron 40.0%
!!! CAGTATTTTTGGACCGCATT+TGG - chr5_4:61369989-61370008 Msa0861880:intron 40.0%
! CCCGTATACCCAATGTTTTA+AGG + chr5_4:61370037-61370056 None:intergenic 40.0%
CTACTCGTCAGCATTGTATT+TGG + chr5_4:61370275-61370294 None:intergenic 40.0%
! TACCCGTCTCTTTGAAAATC+AGG - chr5_4:61370451-61370470 Msa0861880:intron 40.0%
! CACCTGATTTTCAAAGAGAC+GGG + chr5_4:61370456-61370475 None:intergenic 40.0%
! CCACCTGATTTTCAAAGAGA+CGG + chr5_4:61370457-61370476 None:intergenic 40.0%
TCTGCACAAGATACTACAAC+TGG + chr5_4:61370522-61370541 None:intergenic 40.0%
AGTTGTAGTATCTTGTGCAG+AGG - chr5_4:61370521-61370540 Msa0861880:intron 40.0%
TGACAAATTCCACGAAGCAT+CGG + chr5_4:61370687-61370706 None:intergenic 40.0%
CATGTGTCAACTTATCAGTG+TGG + chr5_4:61370854-61370873 None:intergenic 40.0%
AATACGTGCTGTATCTGTGT+AGG - chr5_4:61370902-61370921 Msa0861880:intron 40.0%
CAAACACAAAGTGGGATGTA+GGG - chr5_4:61371251-61371270 Msa0861880:intron 40.0%
CCTGCAATAAAGACGTAGAA+AGG + chr5_4:61371370-61371389 None:intergenic 40.0%
CCTTTCTACGTCTTTATTGC+AGG - chr5_4:61371367-61371386 Msa0861880:intron 40.0%
TATGGTTACACTTACACCTC+TGG + chr5_4:61371846-61371865 None:intergenic 40.0%
CGATAAAGACAACTCTCGTA+TGG + chr5_4:61371864-61371883 None:intergenic 40.0%
TATCTGAATGATGCCGGAGA+AGG - chr5_4:61367169-61367188 Msa0861880:three_prime_UTR 45.0%
GCAACAGCCCTTGAAAGAAT+AGG + chr5_4:61367383-61367402 None:intergenic 45.0%
ATTCTTTCAAGGGCTGTTGC+TGG - chr5_4:61367383-61367402 Msa0861880:CDS 45.0%
AAAAACACCCCAACAAACCC+AGG + chr5_4:61368112-61368131 None:intergenic 45.0%
TGGTCATGGCTTAGGCAATT+TGG - chr5_4:61368501-61368520 Msa0861880:intron 45.0%
CATGGCTTAGGCAATTTGGT+AGG - chr5_4:61368505-61368524 Msa0861880:intron 45.0%
GCTGTATGTTTGGCTGTATC+CGG - chr5_4:61368801-61368820 Msa0861880:intron 45.0%
GCTCTTGCAAGTGGAACAAT+TGG - chr5_4:61369107-61369126 Msa0861880:intron 45.0%
AGAGAGAGAGGGAAAAGATG+AGG + chr5_4:61369280-61369299 None:intergenic 45.0%
AAACAAGGCCAAGGTGTAGA+GGG + chr5_4:61369330-61369349 None:intergenic 45.0%
AATGAGCTTCTGGTGAAGCA+AGG - chr5_4:61369612-61369631 Msa0861880:intron 45.0%
AAAAAGAACCTTCGGGGTGT+TGG - chr5_4:61369780-61369799 Msa0861880:CDS 45.0%
! AAAAGAACCTTCGGGGTGTT+GGG - chr5_4:61369781-61369800 Msa0861880:CDS 45.0%
CACTTGAGAGATCTCGACAT+TGG - chr5_4:61369823-61369842 Msa0861880:CDS 45.0%
CTTTCATTTGGCACCCTAAC+AGG - chr5_4:61370113-61370132 Msa0861880:CDS 45.0%
AAAGACCTTCCCTCCTGTTA+GGG + chr5_4:61370129-61370148 None:intergenic 45.0%
TGGATATGGAATATCTGCGC+AGG - chr5_4:61370211-61370230 Msa0861880:CDS 45.0%
! GCGGTAATAGAAGCACATGA+TGG - chr5_4:61370242-61370261 Msa0861880:intron 45.0%
! ATAGAAGCACATGATGGTCG+TGG - chr5_4:61370248-61370267 Msa0861880:intron 45.0%
!! AGCCATTTTGAGCTGGATAC+AGG - chr5_4:61370416-61370435 Msa0861880:intron 45.0%
!! GCCATTTTGAGCTGGATACA+GGG - chr5_4:61370417-61370436 Msa0861880:intron 45.0%
ACCCTGTATCCAGCTCAAAA+TGG + chr5_4:61370421-61370440 None:intergenic 45.0%
! CCGTCTCTTTGAAAATCAGG+TGG - chr5_4:61370454-61370473 Msa0861880:intron 45.0%
GACTTACGCAGATCCATCTT+GGG - chr5_4:61370476-61370495 Msa0861880:intron 45.0%
GCTAAAATCGGCGCAAGAAT+TGG - chr5_4:61370572-61370591 Msa0861880:intron 45.0%
AAAGCTGTTGTAGGGAGACT+TGG - chr5_4:61370606-61370625 Msa0861880:intron 45.0%
AGACTTGGATTGTGCGGTAA+AGG - chr5_4:61370621-61370640 Msa0861880:intron 45.0%
CTGTATCTGTGTAGGACACT+GGG - chr5_4:61370910-61370929 Msa0861880:intron 45.0%
GCAAACACAAAGTGGGATGT+AGG - chr5_4:61371250-61371269 Msa0861880:intron 45.0%
!! AAGCACCCCAGGAAAGTATT+TGG + chr5_4:61371299-61371318 None:intergenic 45.0%
GATGCACTAACCTTGCTTAG+AGG - chr5_4:61371412-61371431 Msa0861880:intron 45.0%
AAACTGTGCCTCACTTAGCA+AGG + chr5_4:61371758-61371777 None:intergenic 45.0%
!!! TTTTTATTATTTTTATTTTC+TGG - chr5_4:61367476-61367495 Msa0861880:intron 5.0%
!!! TTTTATTATTTTTATTTTCT+GGG - chr5_4:61367477-61367496 Msa0861880:intron 5.0%
TGACGGAGAAGAAAGGGACA+AGG + chr5_4:61367117-61367136 None:intergenic 50.0%
!! TTTGGATTGGGGATAGTGGG+TGG - chr5_4:61367636-61367655 Msa0861880:CDS 50.0%
!! TTGGATTGGGGATAGTGGGT+GGG - chr5_4:61367637-61367656 Msa0861880:CDS 50.0%
TCACAGATCGCGGAAAACAG+TGG + chr5_4:61367835-61367854 None:intergenic 50.0%
!!! GAGGATGCTGGTTTTGGCTT+AGG - chr5_4:61367882-61367901 Msa0861880:intron 50.0%
!! TGGATTAGGGATAGTGGGCA+GGG - chr5_4:61368220-61368239 Msa0861880:intron 50.0%
AGTGGCTGTAGCAGCTATAG+TGG - chr5_4:61368263-61368282 Msa0861880:intron 50.0%
GAGGATGTTGGTCATGGCTT+AGG - chr5_4:61368493-61368512 Msa0861880:intron 50.0%
GCAGATGCGCTTTCAAAGTG+TGG - chr5_4:61368756-61368775 Msa0861880:intron 50.0%
TTCGGTCCGAGCTGTATGTT+TGG - chr5_4:61368791-61368810 Msa0861880:intron 50.0%
TCCACTTGCAAGAGCAGCAA+CGG + chr5_4:61369102-61369121 None:intergenic 50.0%
GGCACAGGAACCATTGCATA+TGG - chr5_4:61369158-61369177 Msa0861880:intron 50.0%
AGGACCTGTCTTAGGTGACT+GGG - chr5_4:61369220-61369239 Msa0861880:intron 50.0%
! GGTGTAGAGGGGCGTAAAAT+AGG + chr5_4:61369318-61369337 None:intergenic 50.0%
! TTTTACGCCCCTCTACACCT+TGG - chr5_4:61369319-61369338 Msa0861880:intron 50.0%
AACAAGGCCAAGGTGTAGAG+GGG + chr5_4:61369329-61369348 None:intergenic 50.0%
CAAACAAGGCCAAGGTGTAG+AGG + chr5_4:61369331-61369350 None:intergenic 50.0%
!! CTCTACACCTTGGCCTTGTT+TGG - chr5_4:61369329-61369348 Msa0861880:intron 50.0%
!! CTGGTGAAGCAAGGTGTTGT+TGG - chr5_4:61369621-61369640 Msa0861880:intron 50.0%
! GGGGTGTTCACATCCAAATG+CGG + chr5_4:61370005-61370024 None:intergenic 50.0%
TCATTTGGCACCCTAACAGG+AGG - chr5_4:61370116-61370135 Msa0861880:CDS 50.0%
CATTTGGCACCCTAACAGGA+GGG - chr5_4:61370117-61370136 Msa0861880:CDS 50.0%
GAAAGACCTTCCCTCCTGTT+AGG + chr5_4:61370130-61370149 None:intergenic 50.0%
GGACTTACGCAGATCCATCT+TGG - chr5_4:61370475-61370494 Msa0861880:intron 50.0%
GTAGTATCTTGTGCAGAGGC+TGG - chr5_4:61370525-61370544 Msa0861880:intron 50.0%
GTAGGGAGACTTGGATTGTG+CGG - chr5_4:61370615-61370634 Msa0861880:intron 50.0%
CACACATTACCGATGCTTCG+TGG - chr5_4:61370675-61370694 Msa0861880:intron 50.0%
GCTGTATCTGTGTAGGACAC+TGG - chr5_4:61370909-61370928 Msa0861880:intron 50.0%
! GCTTTTCCGCTTGTCATGGT+TGG - chr5_4:61371214-61371233 Msa0861880:intron 50.0%
TTTCCGCTTGTCATGGTTGG+TGG - chr5_4:61371217-61371236 Msa0861880:intron 50.0%
GGTGCTTCCCATTAGACCTA+AGG - chr5_4:61371312-61371331 Msa0861880:intron 50.0%
AAACAGGTAGAGCCTGCTGT+TGG - chr5_4:61371498-61371517 Msa0861880:intron 50.0%
! TTGGAGCAGCATGGTTAGCT+TGG - chr5_4:61371517-61371536 Msa0861880:intron 50.0%
TGCCTCACTTAGCAAGGACA+GGG + chr5_4:61371752-61371771 None:intergenic 50.0%
!! GTGGATTAGGGATAGTGGGC+AGG - chr5_4:61368219-61368238 Msa0861880:intron 55.0%
!! ATTAGGGATAGTGGGCAGGG+AGG - chr5_4:61368223-61368242 Msa0861880:intron 55.0%
GGAAAAGAAGCAAGGGCTGC+AGG - chr5_4:61369194-61369213 Msa0861880:intron 55.0%
CAGGACCTGTCTTAGGTGAC+TGG - chr5_4:61369219-61369238 Msa0861880:intron 55.0%
GGACCTGTCTTAGGTGACTG+GGG - chr5_4:61369221-61369240 Msa0861880:intron 55.0%
!! TTCGGGGTGTTGGGTCACAA+GGG - chr5_4:61369790-61369809 Msa0861880:CDS 55.0%
ATCTGCGCAGGCACTAACTG+CGG - chr5_4:61370223-61370242 Msa0861880:intron 55.0%
! TGGAACGAGTGCTGCAATGC+GGG + chr5_4:61370502-61370521 None:intergenic 55.0%
! CTGGAACGAGTGCTGCAATG+CGG + chr5_4:61370503-61370522 None:intergenic 55.0%
! AGGCGCTTTTCCGCTTGTCA+TGG - chr5_4:61371210-61371229 Msa0861880:intron 55.0%
ACGCCACCAACCATGACAAG+CGG + chr5_4:61371223-61371242 None:intergenic 55.0%
AACCATGCTGCTCCAACAGC+AGG + chr5_4:61371513-61371532 None:intergenic 55.0%
CTCACTTAGCAAGGACAGGG+AGG + chr5_4:61371749-61371768 None:intergenic 55.0%
CTCCCTGTCCTTGCTAAGTG+AGG - chr5_4:61371747-61371766 Msa0861880:CDS 55.0%
GTGCCTCACTTAGCAAGGAC+AGG + chr5_4:61371753-61371772 None:intergenic 55.0%
GCCGTTGCTGCTCTTGCAAG+TGG - chr5_4:61369098-61369117 Msa0861880:intron 60.0%
CTGCCCCAGTCACCTAAGAC+AGG + chr5_4:61369227-61369246 None:intergenic 60.0%
CTGTCTTAGGTGACTGGGGC+AGG - chr5_4:61369225-61369244 Msa0861880:intron 60.0%
CTTGTGACCCAACACCCCGA+AGG + chr5_4:61369791-61369810 None:intergenic 60.0%
!! CTTCGGGGTGTTGGGTCACA+AGG - chr5_4:61369789-61369808 Msa0861880:CDS 60.0%
!! TCGGGGTGTTGGGTCACAAG+GGG - chr5_4:61369791-61369810 Msa0861880:CDS 60.0%
TGGCACCCTAACAGGAGGGA+AGG - chr5_4:61370121-61370140 Msa0861880:CDS 60.0%
TTGTGCAGAGGCTGGCGATG+AGG - chr5_4:61370533-61370552 Msa0861880:intron 60.0%
!! GGTCTAATGGGAAGCACCCC+AGG + chr5_4:61371310-61371329 None:intergenic 60.0%
AGCCTGCTGTTGGAGCAGCA+TGG - chr5_4:61371508-61371527 Msa0861880:intron 60.0%
GCAGGCGCAGGACCTGTCTT+AGG - chr5_4:61369212-61369231 Msa0861880:intron 65.0%
GCTGCAATGCGGGCCCAAGA+TGG + chr5_4:61370492-61370511 None:intergenic 65.0%
GAAGCAAGGGCTGCAGGCGC+AGG - chr5_4:61369200-61369219 Msa0861880:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61366996 61371961 61366996 ID=Msa0861880;Name=Msa0861880
chr5_4 mRNA 61366996 61371961 61366996 ID=Msa0861880-mRNA-1;Parent=Msa0861880;Name=Msa0861880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=180|1|1|1|0.83|0.85|7|377|368
chr5_4 exon 61366996 61367453 61366996 ID=Msa0861880-mRNA-1:exon:19001;Parent=Msa0861880-mRNA-1
chr5_4 exon 61367624 61367754 61367624 ID=Msa0861880-mRNA-1:exon:19000;Parent=Msa0861880-mRNA-1
chr5_4 exon 61368315 61368484 61368315 ID=Msa0861880-mRNA-1:exon:18999;Parent=Msa0861880-mRNA-1
chr5_4 exon 61368618 61368746 61368618 ID=Msa0861880-mRNA-1:exon:18998;Parent=Msa0861880-mRNA-1
chr5_4 exon 61369711 61369902 61369711 ID=Msa0861880-mRNA-1:exon:18997;Parent=Msa0861880-mRNA-1
chr5_4 exon 61370089 61370236 61370089 ID=Msa0861880-mRNA-1:exon:18996;Parent=Msa0861880-mRNA-1
chr5_4 exon 61371526 61371961 61371526 ID=Msa0861880-mRNA-1:exon:18995;Parent=Msa0861880-mRNA-1
chr5_4 five_prime_UTR 61371782 61371961 61371782 ID=Msa0861880-mRNA-1:five_prime_utr;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61371526 61371781 61371526 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61370089 61370236 61370089 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61369711 61369902 61369711 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61368618 61368746 61368618 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61368315 61368484 61368315 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61367624 61367754 61367624 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 CDS 61367373 61367453 61367373 ID=Msa0861880-mRNA-1:cds;Parent=Msa0861880-mRNA-1
chr5_4 three_prime_UTR 61366996 61367372 61366996 ID=Msa0861880-mRNA-1:three_prime_utr;Parent=Msa0861880-mRNA-1
Gene Sequence

>Msa0861880

ATGATGCCGGAGAAGGAGCAATTGATTCTTGATTCGGAGATGAAGAGGTATAGGAATGGTGAAACATGGGAATTTGAGAATGACATTAACAATGTTTCTGTCTCAGATGGTGTTTTGTTGGGTTTAGATGGTGGAACAACCTCAACTGTTTGTATTTGTATGCCTATGATCATTCATTTTTCTCATTCTCAGCTTCAATCTCTTCCTATTCTTTCAAGGGCTGTTGCTGGTTGCTCTAATCATAATAGTGTTGGAGAAATTGCTGCAAGGGAAACATTAGAGCAAGTTATGGCAGATGCGCTTTCAAAGTGTGGTTCAAAACGATCTTCGGTCCGAGCTGTATGTTTGGCTGTATCCGGTGTTAACCATCCAACAGATCAACAAAGAATTCTCAGTTGGCTTAGGGATATATTTCCAAGTGATGTGAGGTTATATGTTCAGAATGATGCCGTTGCTGCTCTTGCAAGTGGAACAATTGGCAAACTTCATGGATGTGTATTAATTGCTGGCACAGGAACCATTGCATATGGATTTACTGAAGATGGAAAAGAAGCAAGGGCTGCAGGCGCAGGACCTGTCTTAGGTGACTGGGGCAGTGGATATGGAATATCTGCGCAGGCACTAACTGCGGTAATAGAAGCACATGATGGTCGTGGTCCAAATACAATGCTGACGAGTAGTATTTTACAAACGCTTGGTCTTTCTTCTGCAGAAGAATTGATTGGGTGGACTTACGCAGATCCATCTTGGGCCCGCATTGCAGCACTCGTTCCAGTTGTAGTATCTTGTGCAGAGGCTGGCGATGAGGTTGCAAATAAGATCTTGCTAAAATCGGCGCAAGAATTGGCTTCAAGTGTTAAAGCTGTTGTAGGGAGACTTGGATTGTGCGGTAAAGATGAAAAAGGCGCTTTTCCGCTTGTCATGGTTGGTGGCGTTCTTGAAGCAAACACAAAGTGGGATGTAGGGAAAGAAGTAATAAAATGCATTTCCAAATACTTTCCTGGGGTGCTTCCCATTAGACCTAAGGTAGAGCCTGCTGTTGGAGCAGCATGGTTAGCTTGGAATTTTTTCATGAAAGAATATAACAAGGAATTATGCAGCCACTGA

Protein sequence

>Msa0861880

MMPEKEQLILDSEMKRYRNGETWEFENDINNVSVSDGVLLGLDGGTTSTVCICMPMIIHFSHSQLQSLPILSRAVAGCSNHNSVGEIAARETLEQVMADALSKCGSKRSSVRAVCLAVSGVNHPTDQQRILSWLRDIFPSDVRLYVQNDAVAALASGTIGKLHGCVLIAGTGTIAYGFTEDGKEARAAGAGPVLGDWGSGYGISAQALTAVIEAHDGRGPNTMLTSSILQTLGLSSAEELIGWTYADPSWARIAALVPVVVSCAEAGDEVANKILLKSAQELASSVKAVVGRLGLCGKDEKGAFPLVMVGGVLEANTKWDVGKEVIKCISKYFPGVLPIRPKVEPAVGAAWLAWNFFMKEYNKELCSH*