Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741250 | XP_003617304.2 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741250 | sp|Q54PM7|NAGK_DICDI | 35.843 | 332 | 187 | 7 | 34 | 355 | 1 | 316 | 1.33e-58 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741250 | A0A396HWA9 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741250 | Msa0780240 | 0.817344 | 3.462775e-52 | -8.615850e-47 |
| Msa0741250 | Msa0861880 | 0.963884 | 1.235249e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741250 | MtrunA17_Chr5g0442201 | 98.098 | 368 | 7 | 0 | 1 | 368 | 1 | 368 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741250 | AT1G30540.1 | 72.050 | 322 | 89 | 1 | 36 | 357 | 29 | 349 | 1.62e-170 | 479 |
| Msa0741250 | AT1G30540.2 | 73.897 | 272 | 71 | 0 | 86 | 357 | 7 | 278 | 1.07e-147 | 419 |
| Msa0741250 | AT1G30540.3 | 73.897 | 272 | 71 | 0 | 86 | 357 | 7 | 278 | 1.07e-147 | 419 |
| Msa0741250 | AT1G30540.4 | 72.453 | 265 | 72 | 1 | 36 | 300 | 29 | 292 | 6.49e-139 | 397 |
Find 118 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCGTCAGCATTGTATT+TGG | 0.215745 | 5_1:+60787520 | None:intergenic |
| TTTAATATTTGCAGTGGATA+TGG | 0.250578 | 5_1:-60787595 | Msa0741250:intron |
| AAGCACCCCAGGAAAGTATT+TGG | 0.301399 | 5_1:+60786496 | None:intergenic |
| TGCATTTCCAAATACTTTCC+TGG | 0.311592 | 5_1:-60786503 | Msa0741250:CDS |
| TATACTGACCTTAGGTCTAA+TGG | 0.311823 | 5_1:+60786472 | None:intergenic |
| AATCTCTTCCTATTCTTTCA+AGG | 0.314650 | 5_1:-60790420 | Msa0741250:CDS |
| ATTCTTTCAAGGGCTGTTGC+TGG | 0.326969 | 5_1:-60790409 | Msa0741250:CDS |
| GCTAAAATCGGCGCAAGAAT+TGG | 0.333697 | 5_1:-60787220 | Msa0741250:CDS |
| TTCTTCTGAGAGATAAAGAT+TGG | 0.354119 | 5_1:+60790786 | None:intergenic |
| GAAGCAAGGGCTGCAGGCGC+AGG | 0.355339 | 5_1:-60788592 | Msa0741250:CDS |
| TTTACTTTACAGCCAAGAAT+TGG | 0.355476 | 5_1:+60786144 | None:intergenic |
| TGCTAATAAAATATAAACTT+TGG | 0.357610 | 5_1:+60786093 | None:intergenic |
| GCAGGCGCAGGACCTGTCTT+AGG | 0.366536 | 5_1:-60788580 | Msa0741250:CDS |
| ATCGTCACATAAATTACTAT+TGG | 0.367997 | 5_1:-60785911 | Msa0741250:three_prime_UTR |
| TTGGATGTACATAAACTATA+TGG | 0.379029 | 5_1:+60786112 | None:intergenic |
| GCATATGGATTTACTGAAGA+TGG | 0.381525 | 5_1:-60788619 | Msa0741250:CDS |
| TCTTCTGCAGAAGAATTGAT+TGG | 0.381604 | 5_1:-60787475 | Msa0741250:CDS |
| TCAAGTGTTAAAGCTGTTGT+AGG | 0.385362 | 5_1:-60787195 | Msa0741250:CDS |
| CAGGACCTGTCTTAGGTGAC+TGG | 0.387073 | 5_1:-60788573 | Msa0741250:CDS |
| GGAGCAATTGATTCTTGATT+CGG | 0.389234 | 5_1:-60790602 | Msa0741250:CDS |
| GGAACAATTGGCAAACTTCA+TGG | 0.391537 | 5_1:-60788673 | Msa0741250:CDS |
| ATACTGACCTTAGGTCTAAT+GGG | 0.413875 | 5_1:+60786473 | None:intergenic |
| AGAATTCTTTGTTGATCTGT+TGG | 0.418135 | 5_1:+60788958 | None:intergenic |
| AAAGAATTCTCAGTTGGCTT+AGG | 0.420781 | 5_1:-60788945 | Msa0741250:intron |
| AAATAAGATCTTGCTAAAAT+CGG | 0.422645 | 5_1:-60787232 | Msa0741250:CDS |
| TTCGGTCCGAGCTGTATGTT+TGG | 0.427209 | 5_1:-60789001 | Msa0741250:CDS |
| CCACACTTTACTCTCATAAG+AGG | 0.440062 | 5_1:+60785842 | None:intergenic |
| ATCTCTTCCTATTCTTTCAA+GGG | 0.442969 | 5_1:-60790419 | Msa0741250:CDS |
| GCATTTCCAAATACTTTCCT+GGG | 0.443620 | 5_1:-60786502 | Msa0741250:CDS |
| ATTCGGAGATGAAGAGGTAT+AGG | 0.444303 | 5_1:-60790585 | Msa0741250:CDS |
| CATGGATGTGTATTAATTGC+TGG | 0.450862 | 5_1:-60788655 | Msa0741250:CDS |
| GCTCTTGCAAGTGGAACAAT+TGG | 0.455844 | 5_1:-60788685 | Msa0741250:CDS |
| TTCTACAGAAATTGCTGCAA+GGG | 0.456074 | 5_1:-60789079 | Msa0741250:intron |
| TGGAACGAGTGCTGCAATGC+GGG | 0.460985 | 5_1:+60787293 | None:intergenic |
| GCAAACACAAAGTGGGATGT+AGG | 0.461172 | 5_1:-60786542 | Msa0741250:CDS |
| TTGGAGCAGCATGGTTAGCT+TGG | 0.461737 | 5_1:-60786275 | Msa0741250:CDS |
| GGACTTACGCAGATCCATCT+TGG | 0.461737 | 5_1:-60787317 | Msa0741250:CDS |
| CTGTCTTAGGTGACTGGGGC+AGG | 0.466961 | 5_1:-60788567 | Msa0741250:intron |
| AGACTTGGATTGTGCGGTAA+AGG | 0.467200 | 5_1:-60787171 | Msa0741250:intron |
| TTAGCAAATGGTACATTGGT+AGG | 0.467427 | 5_1:-60786076 | Msa0741250:three_prime_UTR |
| GACTTACGCAGATCCATCTT+GGG | 0.471146 | 5_1:-60787316 | Msa0741250:CDS |
| GGCACAGGAACCATTGCATA+TGG | 0.473099 | 5_1:-60788634 | Msa0741250:CDS |
| CTTCTGCAGAAGAATTGATT+GGG | 0.475265 | 5_1:-60787474 | Msa0741250:intron |
| TCTAATCATAATAGTGTTGG+AGG | 0.480939 | 5_1:-60790382 | Msa0741250:intron |
| GGTCTAATGGGAAGCACCCC+AGG | 0.482189 | 5_1:+60786485 | None:intergenic |
| GGAAAAGAAGCAAGGGCTGC+AGG | 0.483573 | 5_1:-60788598 | Msa0741250:CDS |
| GCTGTATGTTTGGCTGTATC+CGG | 0.484239 | 5_1:-60788991 | Msa0741250:CDS |
| TTTCCGCTTGTCATGGTTGG+TGG | 0.487092 | 5_1:-60786575 | Msa0741250:CDS |
| GCAACAGCCCTTGAAAGAAT+AGG | 0.488351 | 5_1:+60790412 | None:intergenic |
| AAAGCTGTTGTAGGGAGACT+TGG | 0.491123 | 5_1:-60787186 | Msa0741250:CDS |
| AGAATCAATTGCTCCTTCTC+CGG | 0.496172 | 5_1:+60790610 | None:intergenic |
| ACATATAACCTCACATCACT+TGG | 0.500294 | 5_1:+60788727 | None:intergenic |
| TCTGCACAAGATACTACAAC+TGG | 0.500794 | 5_1:+60787273 | None:intergenic |
| AGGACCTGTCTTAGGTGACT+GGG | 0.506306 | 5_1:-60788572 | Msa0741250:CDS |
| CAATGTTGACGGAGAAGAAA+GGG | 0.507872 | 5_1:+60790672 | None:intergenic |
| GTGCCTCACTTAGCAAGGAC+AGG | 0.508933 | 5_1:+60786041 | None:intergenic |
| GCCGTTGCTGCTCTTGCAAG+TGG | 0.509723 | 5_1:-60788694 | Msa0741250:CDS |
| TGCTCTAATCATAATAGTGT+TGG | 0.509813 | 5_1:-60790385 | Msa0741250:CDS |
| TATGGTTACACTTACACCTC+TGG | 0.510270 | 5_1:+60785948 | None:intergenic |
| GTAGTATCTTGTGCAGAGGC+TGG | 0.511756 | 5_1:-60787267 | Msa0741250:CDS |
| AACCATGCTGCTCCAACAGC+AGG | 0.514568 | 5_1:+60786282 | None:intergenic |
| TCTTCTGAGAGATAAAGATT+GGG | 0.516082 | 5_1:+60790787 | None:intergenic |
| GTGTGGTTCAAAACGATCTT+CGG | 0.516505 | 5_1:-60789019 | Msa0741250:CDS |
| ATCAACAAAGAATTCTCAGT+TGG | 0.518161 | 5_1:-60788951 | Msa0741250:CDS |
| GGAAACATTAGAGCAAGTTA+TGG | 0.525125 | 5_1:-60789058 | Msa0741250:CDS |
| GGTAACTATTTACACAAGCA+AGG | 0.526678 | 5_1:+60785969 | None:intergenic |
| GGTATAGGAATGGTGAAACA+TGG | 0.529685 | 5_1:-60790570 | Msa0741250:CDS |
| CAAACACAAAGTGGGATGTA+GGG | 0.530904 | 5_1:-60786541 | Msa0741250:CDS |
| AACAATGTTTCTGTCTCAGA+TGG | 0.535011 | 5_1:-60790529 | Msa0741250:CDS |
| TCCACTTGCAAGAGCAGCAA+CGG | 0.536786 | 5_1:+60788693 | None:intergenic |
| GCTGCAATGCGGGCCCAAGA+TGG | 0.543762 | 5_1:+60787303 | None:intergenic |
| TTTATTAGCAAATGGTACAT+TGG | 0.546696 | 5_1:-60786080 | Msa0741250:three_prime_UTR |
| TCAATGTTGACGGAGAAGAA+AGG | 0.547686 | 5_1:+60790671 | None:intergenic |
| AATAAGTATCTGAATGATGC+CGG | 0.548052 | 5_1:-60790629 | Msa0741250:exon |
| CTCCCTGTCCTTGCTAAGTG+AGG | 0.554977 | 5_1:-60786044 | Msa0741250:three_prime_UTR |
| TTCTTTGTTGATCTGTTGGA+TGG | 0.558478 | 5_1:+60788962 | None:intergenic |
| GTAACTATTTACACAAGCAA+GGG | 0.563627 | 5_1:+60785970 | None:intergenic |
| GGTGCTTCCCATTAGACCTA+AGG | 0.571799 | 5_1:-60786480 | Msa0741250:intron |
| TTCTTGATTCGGAGATGAAG+AGG | 0.573073 | 5_1:-60790591 | Msa0741250:CDS |
| TTCAGTAAATCCATATGCAA+TGG | 0.574987 | 5_1:+60788624 | None:intergenic |
| CAAGTGTTAAAGCTGTTGTA+GGG | 0.578022 | 5_1:-60787194 | Msa0741250:CDS |
| TATCTGAATGATGCCGGAGA+AGG | 0.578412 | 5_1:-60790623 | Msa0741250:exon |
| ACTGACAATTCATGATGAAG+TGG | 0.578513 | 5_1:-60786212 | Msa0741250:exon |
| GCAGATGCGCTTTCAAAGTG+TGG | 0.579158 | 5_1:-60789036 | Msa0741250:CDS |
| AGTTGTAGTATCTTGTGCAG+AGG | 0.585349 | 5_1:-60787271 | Msa0741250:CDS |
| CGATAAAGACAACTCTCGTA+TGG | 0.585945 | 5_1:+60785930 | None:intergenic |
| GAGATGAAGAGGTATAGGAA+TGG | 0.586169 | 5_1:-60790580 | Msa0741250:CDS |
| TGGATATGGAATATCTGCGC+AGG | 0.586238 | 5_1:-60787581 | Msa0741250:CDS |
| GTATAGGAATGGTGAAACAT+GGG | 0.588471 | 5_1:-60790569 | Msa0741250:CDS |
| CTGCCCCAGTCACCTAAGAC+AGG | 0.590138 | 5_1:+60788568 | None:intergenic |
| TTTCTACAGAAATTGCTGCA+AGG | 0.590652 | 5_1:-60789080 | Msa0741250:intron |
| TTCTTGAAGCAAACACAAAG+TGG | 0.592334 | 5_1:-60786550 | Msa0741250:CDS |
| CTGAAGATGGAAAAGAAGCA+AGG | 0.600282 | 5_1:-60788606 | Msa0741250:CDS |
| ACGCCACCAACCATGACAAG+CGG | 0.606206 | 5_1:+60786572 | None:intergenic |
| TGAAGATGGAAAAGAAGCAA+GGG | 0.610105 | 5_1:-60788605 | Msa0741250:CDS |
| AAACTGTGCCTCACTTAGCA+AGG | 0.617081 | 5_1:+60786036 | None:intergenic |
| ATAGAAGCACATGATGGTCG+TGG | 0.617860 | 5_1:-60787544 | Msa0741250:CDS |
| ATCTGTTGGATGGTTAACAC+CGG | 0.625271 | 5_1:+60788972 | None:intergenic |
| TCTTGAAGCAAACACAAAGT+GGG | 0.629952 | 5_1:-60786549 | Msa0741250:CDS |
| AAACAGGTAGAGCCTGCTGT+TGG | 0.632953 | 5_1:-60786294 | Msa0741250:intron |
| CATTTCCAAATACTTTCCTG+GGG | 0.634649 | 5_1:-60786501 | Msa0741250:CDS |
| ACTTCATCATGAATTGTCAG+TGG | 0.636732 | 5_1:+60786214 | None:intergenic |
| TTTCATGAAAGAATATAACA+AGG | 0.640802 | 5_1:-60786247 | Msa0741250:CDS |
| GCGGTAATAGAAGCACATGA+TGG | 0.649285 | 5_1:-60787550 | Msa0741250:CDS |
| CTTGTGTAAATAGTTACCAG+AGG | 0.649586 | 5_1:-60785964 | Msa0741250:three_prime_UTR |
| TGTGTATTAATTGCTGGCAC+AGG | 0.650395 | 5_1:-60788649 | Msa0741250:CDS |
| CATACAAATACAAACAGTTG+AGG | 0.651810 | 5_1:+60790477 | None:intergenic |
| ATATATTTCCAAGTGATGTG+AGG | 0.653488 | 5_1:-60788735 | Msa0741250:CDS |
| AGCCTGCTGTTGGAGCAGCA+TGG | 0.659631 | 5_1:-60786284 | Msa0741250:CDS |
| ATCTGCGCAGGCACTAACTG+CGG | 0.661132 | 5_1:-60787569 | Msa0741250:CDS |
| TGCCTCACTTAGCAAGGACA+GGG | 0.661481 | 5_1:+60786042 | None:intergenic |
| TTGTGCAGAGGCTGGCGATG+AGG | 0.669812 | 5_1:-60787259 | Msa0741250:CDS |
| ATACAGCCAAACATACAGCT+CGG | 0.679468 | 5_1:+60788995 | None:intergenic |
| CTGGAACGAGTGCTGCAATG+CGG | 0.681899 | 5_1:+60787292 | None:intergenic |
| TGACGGAGAAGAAAGGGACA+AGG | 0.687042 | 5_1:+60790678 | None:intergenic |
| GTAGGGAGACTTGGATTGTG+CGG | 0.692237 | 5_1:-60787177 | Msa0741250:CDS |
| GGACCTGTCTTAGGTGACTG+GGG | 0.694401 | 5_1:-60788571 | Msa0741250:CDS |
| CTCACTTAGCAAGGACAGGG+AGG | 0.703456 | 5_1:+60786045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATTACTTTCATT+TGG | - | chr5_1:60788960-60788979 | Msa0741250:CDS | 10.0% |
| !! | TTAAATTTAAAAGAAATTGA+TGG | - | chr5_1:60789956-60789975 | Msa0741250:intron | 10.0% |
| !!! | ATAGAATGAAATTTTAAATT+TGG | - | chr5_1:60790326-60790345 | Msa0741250:intron | 10.0% |
| !! | AAAATATTGATAAAAAAGAA+AGG | - | chr5_1:60790473-60790492 | Msa0741250:CDS | 10.0% |
| !! | ATTATGTAGTAATACTTATT+TGG | - | chr5_1:60786381-60786400 | Msa0741250:intron | 15.0% |
| !! | ATGTAAGAAATTCATAATTT+AGG | - | chr5_1:60786823-60786842 | Msa0741250:intron | 15.0% |
| !! | AACTTATAGTTTATATGAAA+AGG | + | chr5_1:60788310-60788329 | None:intergenic | 15.0% |
| !!! | GAAAGTAATAATTTTTACAT+TGG | + | chr5_1:60788957-60788976 | None:intergenic | 15.0% |
| !! | TGCTAATAAAATATAAACTT+TGG | + | chr5_1:60790561-60790580 | None:intergenic | 15.0% |
| !!! | GTTTATATTTTATTAGCAAA+TGG | - | chr5_1:60790563-60790582 | Msa0741250:CDS | 15.0% |
| !!! | AGAATTTTGAATGAATGATT+AGG | - | chr5_1:60786411-60786430 | Msa0741250:intron | 20.0% |
| !! | TTGTTTACATTAATAGTGTT+TGG | - | chr5_1:60787016-60787035 | Msa0741250:intron | 20.0% |
| !! | TACAAAGATTTGTCAAATAA+CGG | - | chr5_1:60787186-60787205 | Msa0741250:CDS | 20.0% |
| !!! | CATTTGTTTTATATTGTAGA+AGG | - | chr5_1:60787394-60787413 | Msa0741250:intron | 20.0% |
| !! | AAAAGGTAACATCAATTTAT+AGG | + | chr5_1:60788544-60788563 | None:intergenic | 20.0% |
| !! | ATAGATTTGAAGAAAGAAAA+AGG | + | chr5_1:60788561-60788580 | None:intergenic | 20.0% |
| !! | AAAAATGGATATAATCAAGT+TGG | + | chr5_1:60789021-60789040 | None:intergenic | 20.0% |
| !!! | TCAAAATGGCTTTAAATTAT+AGG | + | chr5_1:60789266-60789285 | None:intergenic | 20.0% |
| !! | AAATAAGATCTTGCTAAAAT+CGG | - | chr5_1:60789419-60789438 | Msa0741250:intron | 20.0% |
| !! | TTTACCTCATATTAATAGTA+TGG | - | chr5_1:60789892-60789911 | Msa0741250:intron | 20.0% |
| !! | TTATCCATACTATTAATATG+AGG | + | chr5_1:60789899-60789918 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAGTAATTGACT+TGG | - | chr5_1:60789917-60789936 | Msa0741250:intron | 20.0% |
| !!! | TGACTGATATTATGTAATTT+TGG | - | chr5_1:60790036-60790055 | Msa0741250:intron | 20.0% |
| !! | TTTCATGAAAGAATATAACA+AGG | - | chr5_1:60790404-60790423 | Msa0741250:CDS | 20.0% |
| ! | AAGAGAAAAATCAATGTTGA+CGG | + | chr5_1:60785993-60786012 | None:intergenic | 25.0% |
| ! | TGAGAAAAATGAATGATCAT+AGG | + | chr5_1:60786200-60786219 | None:intergenic | 25.0% |
| !!! | CATTCATTCTCTCTATTTTT+TGG | - | chr5_1:60786300-60786319 | Msa0741250:intron | 25.0% |
| ! | TTATACTAAACAGCTTATCA+CGG | + | chr5_1:60786587-60786606 | None:intergenic | 25.0% |
| ! | TGATAAGCTGTTTAGTATAA+AGG | - | chr5_1:60786587-60786606 | Msa0741250:CDS | 25.0% |
| ! | TATAAAGGTTTGTCATATAG+TGG | - | chr5_1:60786602-60786621 | Msa0741250:intron | 25.0% |
| ! | GTGATTGATTGTTTAATACT+AGG | - | chr5_1:60786710-60786729 | Msa0741250:intron | 25.0% |
| !! | TTAATACTAGGAGAATTTTG+AGG | - | chr5_1:60786722-60786741 | Msa0741250:intron | 25.0% |
| !!! | GAAAAAGAACTTGTTTTTAC+TGG | - | chr5_1:60786775-60786794 | Msa0741250:intron | 25.0% |
| ! | TAGGAAAATCTGTTATGTTA+TGG | - | chr5_1:60786842-60786861 | Msa0741250:intron | 25.0% |
| !!! | AGTTTTGATTTTTTGTTTCC+TGG | - | chr5_1:60786950-60786969 | Msa0741250:intron | 25.0% |
| !!! | GTTTTGATTTTTTGTTTCCT+GGG | - | chr5_1:60786951-60786970 | Msa0741250:intron | 25.0% |
| ! | TAATCCACAAGAAAAAAAAG+GGG | + | chr5_1:60787066-60787085 | None:intergenic | 25.0% |
| ! | CTAATCCACAAGAAAAAAAA+GGG | + | chr5_1:60787067-60787086 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTCTTGTGGATTA+GGG | - | chr5_1:60787066-60787085 | Msa0741250:intron | 25.0% |
| ! | TATTGCAGAACAATAACAAT+TGG | + | chr5_1:60787156-60787175 | None:intergenic | 25.0% |
| ! | CTAAATGATGAATTTCTAAC+AGG | + | chr5_1:60787447-60787466 | None:intergenic | 25.0% |
| ! | CTGTTAGAAATTCATCATTT+AGG | - | chr5_1:60787445-60787464 | Msa0741250:intron | 25.0% |
| ! | ACTTAAGAGTAATATTAGCA+GGG | + | chr5_1:60787785-60787804 | None:intergenic | 25.0% |
| ! | TACTTAAGAGTAATATTAGC+AGG | + | chr5_1:60787786-60787805 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr5_1:60788204-60788223 | None:intergenic | 25.0% |
| ! | TAAGCTATCTCTATAACAAA+AGG | - | chr5_1:60788269-60788288 | Msa0741250:intron | 25.0% |
| ! | ACATCAATCATAATATGACT+AGG | - | chr5_1:60788602-60788621 | Msa0741250:CDS | 25.0% |
| !!! | ATGACTAGGAATTGTTTTTT+TGG | - | chr5_1:60788616-60788635 | Msa0741250:CDS | 25.0% |
| !!! | TTTTTTGGAAAAAGAACCTT+CGG | - | chr5_1:60788631-60788650 | Msa0741250:CDS | 25.0% |
| !! | TGAATCTTATTGGATGTTTT+TGG | + | chr5_1:60788813-60788832 | None:intergenic | 25.0% |
| ! | CTAACAAAACTGAATCTTAT+TGG | + | chr5_1:60788823-60788842 | None:intergenic | 25.0% |
| !!! | CAATAAGATTCAGTTTTGTT+AGG | - | chr5_1:60788821-60788840 | Msa0741250:intron | 25.0% |
| ! | TTTACATTGGATGAAAATGA+GGG | + | chr5_1:60788944-60788963 | None:intergenic | 25.0% |
| !! | TTTTACATTGGATGAAAATG+AGG | + | chr5_1:60788945-60788964 | None:intergenic | 25.0% |
| ! | GCAAAAATGTCAACAAAAAA+TGG | + | chr5_1:60789036-60789055 | None:intergenic | 25.0% |
| !! | TTTTGCTTTAATATTTGCAG+TGG | - | chr5_1:60789050-60789069 | Msa0741250:CDS | 25.0% |
| ! | TTTAATATTTGCAGTGGATA+TGG | - | chr5_1:60789056-60789075 | Msa0741250:CDS | 25.0% |
| ! | ATTACATGTAGATCTTAATG+TGG | - | chr5_1:60789646-60789665 | Msa0741250:intron | 25.0% |
| !! | AAATTACGATTTTTACTGCT+TGG | - | chr5_1:60789826-60789845 | Msa0741250:intron | 25.0% |
| ! | AATTTAAATGAATGCTCTAG+AGG | + | chr5_1:60789943-60789962 | None:intergenic | 25.0% |
| ! | TACACAAATCATCATCATAT+AGG | + | chr5_1:60790012-60790031 | None:intergenic | 25.0% |
| !! | AAATTTGGTTTATTGCAAAC+AGG | - | chr5_1:60790341-60790360 | Msa0741250:intron | 25.0% |
| ! | TTGGATGTACATAAACTATA+TGG | + | chr5_1:60790542-60790561 | None:intergenic | 25.0% |
| ! | TTTATTAGCAAATGGTACAT+TGG | - | chr5_1:60790571-60790590 | Msa0741250:CDS | 25.0% |
| ! | ATCGTCACATAAATTACTAT+TGG | - | chr5_1:60790740-60790759 | Msa0741250:five_prime_UTR | 25.0% |
| ! | TCTTCTGAGAGATAAAGATT+GGG | + | chr5_1:60785867-60785886 | None:intergenic | 30.0% |
| ! | TTCTTCTGAGAGATAAAGAT+TGG | + | chr5_1:60785868-60785887 | None:intergenic | 30.0% |
| AGAAAAAGAGATTGATACAG+TGG | - | chr5_1:60785884-60785903 | Msa0741250:three_prime_UTR | 30.0% | |
| AATAAGTATCTGAATGATGC+CGG | - | chr5_1:60786022-60786041 | Msa0741250:three_prime_UTR | 30.0% | |
| CATACAAATACAAACAGTTG+AGG | + | chr5_1:60786177-60786196 | None:intergenic | 30.0% | |
| AATCTCTTCCTATTCTTTCA+AGG | - | chr5_1:60786231-60786250 | Msa0741250:CDS | 30.0% | |
| ATCTCTTCCTATTCTTTCAA+GGG | - | chr5_1:60786232-60786251 | Msa0741250:CDS | 30.0% | |
| TGCTCTAATCATAATAGTGT+TGG | - | chr5_1:60786266-60786285 | Msa0741250:CDS | 30.0% | |
| ! | TCTAATCATAATAGTGTTGG+AGG | - | chr5_1:60786269-60786288 | Msa0741250:CDS | 30.0% |
| GTACATTGATAAACCTTGTT+TGG | - | chr5_1:60786438-60786457 | Msa0741250:intron | 30.0% | |
| !!! | TTCAATTCCCCCTTTTTTTT+TGG | - | chr5_1:60786477-60786496 | Msa0741250:intron | 30.0% |
| ATCCCCAATCCAAAAAAAAA+GGG | + | chr5_1:60786489-60786508 | None:intergenic | 30.0% | |
| TATCCCCAATCCAAAAAAAA+AGG | + | chr5_1:60786490-60786509 | None:intergenic | 30.0% | |
| TACCATTGTTTAGTCCATAT+TGG | - | chr5_1:60786865-60786884 | Msa0741250:intron | 30.0% | |
| ATCGATAATAACCTCCAATA+TGG | + | chr5_1:60786882-60786901 | None:intergenic | 30.0% | |
| ! | ATCGATTCTCTCTGTTATAT+TGG | - | chr5_1:60786896-60786915 | Msa0741250:intron | 30.0% |
| !!! | TTTTTGTTTTCTGGGTTTGT+TGG | - | chr5_1:60786986-60787005 | Msa0741250:intron | 30.0% |
| !!! | TTTTGTTTTCTGGGTTTGTT+GGG | - | chr5_1:60786987-60787006 | Msa0741250:intron | 30.0% |
| AATCCACAAGAAAAAAAAGG+GGG | + | chr5_1:60787065-60787084 | None:intergenic | 30.0% | |
| CCTAATCCACAAGAAAAAAA+AGG | + | chr5_1:60787068-60787087 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTTCTTGTGGATT+AGG | - | chr5_1:60787065-60787084 | Msa0741250:intron | 30.0% |
| GATTCAATGTTGTCAAATAG+TGG | - | chr5_1:60787104-60787123 | Msa0741250:intron | 30.0% | |
| ! | CGATACACTATTTTGTACAA+AGG | - | chr5_1:60787215-60787234 | Msa0741250:CDS | 30.0% |
| TACAATACTAGGAGAATTTG+AGG | - | chr5_1:60787333-60787352 | Msa0741250:intron | 30.0% | |
| TAGGAAAAACTGCTATGTTA+TGG | - | chr5_1:60787464-60787483 | Msa0741250:intron | 30.0% | |
| ATCATATTTGTCCTAAACGA+TGG | + | chr5_1:60787492-60787511 | None:intergenic | 30.0% | |
| AAAATGAAGATCACATTGCA+AGG | - | chr5_1:60787513-60787532 | Msa0741250:CDS | 30.0% | |
| AGCAATTTCTGTAGAAAAAG+TGG | + | chr5_1:60787568-60787587 | None:intergenic | 30.0% | |
| AGAATTCTTTGTTGATCTGT+TGG | + | chr5_1:60787696-60787715 | None:intergenic | 30.0% | |
| ATCAACAAAGAATTCTCAGT+TGG | - | chr5_1:60787700-60787719 | Msa0741250:intron | 30.0% | |
| TTGCTCTATATTACTGTATC+TGG | - | chr5_1:60787729-60787748 | Msa0741250:intron | 30.0% | |
| ! | GACTTATTTGTGCATTTTTG+TGG | - | chr5_1:60787827-60787846 | Msa0741250:intron | 30.0% |
| ATATATTTCCAAGTGATGTG+AGG | - | chr5_1:60787916-60787935 | Msa0741250:intron | 30.0% | |
| TTCAGTAAATCCATATGCAA+TGG | + | chr5_1:60788030-60788049 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCAATCA+TGG | - | chr5_1:60788327-60788346 | Msa0741250:intron | 30.0% |
| ! | AAAAAAGAGCTAGTTTGGAT+TGG | + | chr5_1:60788444-60788463 | None:intergenic | 30.0% |
| CATGTAAAAAAGAGCTAGTT+TGG | + | chr5_1:60788449-60788468 | None:intergenic | 30.0% | |
| TTTACATGAAAATGAGCTTC+TGG | - | chr5_1:60788461-60788480 | Msa0741250:intron | 30.0% | |
| !! | TTTTTGGAAAAAGAACCTTC+GGG | - | chr5_1:60788632-60788651 | Msa0741250:CDS | 30.0% |
| ! | TGTTAGGTTTGCAGTATTTT+TGG | - | chr5_1:60788837-60788856 | Msa0741250:intron | 30.0% |
| !!! | ATGTTTTAAGGTTTTGGGTA+GGG | + | chr5_1:60788884-60788903 | None:intergenic | 30.0% |
| !!! | AATGTTTTAAGGTTTTGGGT+AGG | + | chr5_1:60788885-60788904 | None:intergenic | 30.0% |
| TACCCAAAACCTTAAAACAT+TGG | - | chr5_1:60788884-60788903 | Msa0741250:intron | 30.0% | |
| ACCCAAAACCTTAAAACATT+GGG | - | chr5_1:60788885-60788904 | Msa0741250:intron | 30.0% | |
| !!! | ACCCAATGTTTTAAGGTTTT+GGG | + | chr5_1:60788889-60788908 | None:intergenic | 30.0% |
| !!! | TACCCAATGTTTTAAGGTTT+TGG | + | chr5_1:60788890-60788909 | None:intergenic | 30.0% |
| ACCTTAAAACATTGGGTATA+CGG | - | chr5_1:60788892-60788911 | Msa0741250:intron | 30.0% | |
| ! | AGTAGTATTTTACAAACGCT+TGG | - | chr5_1:60789149-60789168 | Msa0741250:intron | 30.0% |
| !! | AATTTAAAGCCATTTTGAGC+TGG | - | chr5_1:60789268-60789287 | Msa0741250:intron | 30.0% |
| !! | TGAAGTAAGATTTTGTTGTG+AGG | + | chr5_1:60789610-60789629 | None:intergenic | 30.0% |
| ACTGACATTTACAATTGAAG+GGG | + | chr5_1:60789797-60789816 | None:intergenic | 30.0% | |
| CACTGACATTTACAATTGAA+GGG | + | chr5_1:60789798-60789817 | None:intergenic | 30.0% | |
| TAATATGAGGTAAAGTTTGC+AGG | + | chr5_1:60789886-60789905 | None:intergenic | 30.0% | |
| !! | GTAATTTTGGCAGATGAAAA+AGG | - | chr5_1:60790049-60790068 | Msa0741250:intron | 30.0% |
| TCATTCTATGCTAAAGATTC+TGG | + | chr5_1:60790315-60790334 | None:intergenic | 30.0% | |
| GAAGTGAAAAATCCAATTCT+TGG | - | chr5_1:60790495-60790514 | Msa0741250:CDS | 30.0% | |
| TTTACTTTACAGCCAAGAAT+TGG | + | chr5_1:60790510-60790529 | None:intergenic | 30.0% | |
| GTAACTATTTACACAAGCAA+GGG | + | chr5_1:60790684-60790703 | None:intergenic | 30.0% | |
| ! | GGAGCAATTGATTCTTGATT+CGG | - | chr5_1:60786049-60786068 | Msa0741250:three_prime_UTR | 35.0% |
| GTATAGGAATGGTGAAACAT+GGG | - | chr5_1:60786082-60786101 | Msa0741250:three_prime_UTR | 35.0% | |
| ! | AACAATGTTTCTGTCTCAGA+TGG | - | chr5_1:60786122-60786141 | Msa0741250:three_prime_UTR | 35.0% |
| AGTCAACACTAAACCAAACA+AGG | + | chr5_1:60786454-60786473 | None:intergenic | 35.0% | |
| !!! | TTCCCCCTTTTTTTTTGGAT+TGG | - | chr5_1:60786482-60786501 | Msa0741250:CDS | 35.0% |
| !!! | TCCCCCTTTTTTTTTGGATT+GGG | - | chr5_1:60786483-60786502 | Msa0741250:CDS | 35.0% |
| TCCCCAATCCAAAAAAAAAG+GGG | + | chr5_1:60786488-60786507 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGGATTGGGGATAG+TGG | - | chr5_1:60786491-60786510 | Msa0741250:CDS | 35.0% |
| !!! | TTTTTTGGATTGGGGATAGT+GGG | - | chr5_1:60786492-60786511 | Msa0741250:CDS | 35.0% |
| AAACAATCAATCACAGATCG+CGG | + | chr5_1:60786704-60786723 | None:intergenic | 35.0% | |
| !!! | AATTTTGAGGATGCTGGTTT+TGG | - | chr5_1:60786735-60786754 | Msa0741250:intron | 35.0% |
| !!! | CTTGTTTTTACTGGAGAAAG+TGG | - | chr5_1:60786784-60786803 | Msa0741250:intron | 35.0% |
| ! | CTCCAATATGGACTAAACAA+TGG | + | chr5_1:60786870-60786889 | None:intergenic | 35.0% |
| CATTGTTTAGTCCATATTGG+AGG | - | chr5_1:60786868-60786887 | Msa0741250:intron | 35.0% | |
| !!! | GGCTGTTTGACTTCATTTTT+TGG | - | chr5_1:60786917-60786936 | Msa0741250:intron | 35.0% |
| !! | TTTTTGTTTCCTGGGTTTGT+TGG | - | chr5_1:60786959-60786978 | Msa0741250:intron | 35.0% |
| !! | TTTTGTTTCCTGGGTTTGTT+GGG | - | chr5_1:60786960-60786979 | Msa0741250:intron | 35.0% |
| !!! | TTGGGGTGTTTTTGTTTTCT+GGG | - | chr5_1:60786978-60786997 | Msa0741250:intron | 35.0% |
| !!! | TTTGTTTTCTGGGTTTGTTG+GGG | - | chr5_1:60786988-60787007 | Msa0741250:intron | 35.0% |
| !!! | ATTCCCCCTTTTTTTTCTTG+TGG | - | chr5_1:60787059-60787078 | Msa0741250:intron | 35.0% |
| TTGTAACTAATCGCAGATTG+TGG | + | chr5_1:60787318-60787337 | None:intergenic | 35.0% | |
| ! | CTGCGATTAGTTACAATACT+AGG | - | chr5_1:60787322-60787341 | Msa0741250:CDS | 35.0% |
| ATGTTATGGTACCATCGTTT+AGG | - | chr5_1:60787478-60787497 | Msa0741250:CDS | 35.0% | |
| TTTCTACAGAAATTGCTGCA+AGG | - | chr5_1:60787571-60787590 | Msa0741250:CDS | 35.0% | |
| TTCTACAGAAATTGCTGCAA+GGG | - | chr5_1:60787572-60787591 | Msa0741250:CDS | 35.0% | |
| GGAAACATTAGAGCAAGTTA+TGG | - | chr5_1:60787593-60787612 | Msa0741250:intron | 35.0% | |
| TTCTTTGTTGATCTGTTGGA+TGG | + | chr5_1:60787692-60787711 | None:intergenic | 35.0% | |
| ! | AAAGAATTCTCAGTTGGCTT+AGG | - | chr5_1:60787706-60787725 | Msa0741250:intron | 35.0% |
| !! | TGTTTCTCTGCTACTTTAAC+AGG | - | chr5_1:60787892-60787911 | Msa0741250:intron | 35.0% |
| !! | GTTTCTCTGCTACTTTAACA+GGG | - | chr5_1:60787893-60787912 | Msa0741250:intron | 35.0% |
| ACATATAACCTCACATCACT+TGG | + | chr5_1:60787927-60787946 | None:intergenic | 35.0% | |
| CATGGATGTGTATTAATTGC+TGG | - | chr5_1:60787996-60788015 | Msa0741250:intron | 35.0% | |
| GCATATGGATTTACTGAAGA+TGG | - | chr5_1:60788032-60788051 | Msa0741250:intron | 35.0% | |
| TGAAGATGGAAAAGAAGCAA+GGG | - | chr5_1:60788046-60788065 | Msa0741250:intron | 35.0% | |
| TGCTAAGAAATAGAGAGAGA+GGG | + | chr5_1:60788150-60788169 | None:intergenic | 35.0% | |
| !!! | GAAAGCATTTTCCTGCTAAT+TGG | + | chr5_1:60788518-60788537 | None:intergenic | 35.0% |
| !! | TTTTGGAAAAAGAACCTTCG+GGG | - | chr5_1:60788633-60788652 | Msa0741250:CDS | 35.0% |
| GAGTAACCACTTAAGTGATT+TGG | - | chr5_1:60788710-60788729 | Msa0741250:CDS | 35.0% | |
| CACATCTACACTCAAAACTA+GGG | - | chr5_1:60788737-60788756 | Msa0741250:CDS | 35.0% | |
| ACATCTACACTCAAAACTAG+GGG | - | chr5_1:60788738-60788757 | Msa0741250:CDS | 35.0% | |
| !!! | TTTTTTGCCGCAAAATCGAT+CGG | + | chr5_1:60788781-60788800 | None:intergenic | 35.0% |
| !!! | TGTTTTAAGGTTTTGGGTAG+GGG | + | chr5_1:60788883-60788902 | None:intergenic | 35.0% |
| CCTTAAAACATTGGGTATAC+GGG | - | chr5_1:60788893-60788912 | Msa0741250:intron | 35.0% | |
| GTTGAGCAACATATAAGTGA+AGG | + | chr5_1:60788920-60788939 | None:intergenic | 35.0% | |
| TCTTCTGCAGAAGAATTGAT+TGG | - | chr5_1:60789176-60789195 | Msa0741250:intron | 35.0% | |
| CTTCTGCAGAAGAATTGATT+GGG | - | chr5_1:60789177-60789196 | Msa0741250:intron | 35.0% | |
| TCAAGTGTTAAAGCTGTTGT+AGG | - | chr5_1:60789456-60789475 | Msa0741250:intron | 35.0% | |
| CAAGTGTTAAAGCTGTTGTA+GGG | - | chr5_1:60789457-60789476 | Msa0741250:intron | 35.0% | |
| ! | GCACTGACATTTACAATTGA+AGG | + | chr5_1:60789799-60789818 | None:intergenic | 35.0% |
| TTCTTGAAGCAAACACAAAG+TGG | - | chr5_1:60790101-60790120 | Msa0741250:intron | 35.0% | |
| TCTTGAAGCAAACACAAAGT+GGG | - | chr5_1:60790102-60790121 | Msa0741250:intron | 35.0% | |
| TGCATTTCCAAATACTTTCC+TGG | - | chr5_1:60790148-60790167 | Msa0741250:intron | 35.0% | |
| GCATTTCCAAATACTTTCCT+GGG | - | chr5_1:60790149-60790168 | Msa0741250:intron | 35.0% | |
| CATTTCCAAATACTTTCCTG+GGG | - | chr5_1:60790150-60790169 | Msa0741250:intron | 35.0% | |
| ATACTGACCTTAGGTCTAAT+GGG | + | chr5_1:60790181-60790200 | None:intergenic | 35.0% | |
| TATACTGACCTTAGGTCTAA+TGG | + | chr5_1:60790182-60790201 | None:intergenic | 35.0% | |
| TGACGATATATACTGACCTT+AGG | + | chr5_1:60790190-60790209 | None:intergenic | 35.0% | |
| ATTTACTAAGCCTCTAAGCA+AGG | + | chr5_1:60790284-60790303 | None:intergenic | 35.0% | |
| ACTTCATCATGAATTGTCAG+TGG | + | chr5_1:60790440-60790459 | None:intergenic | 35.0% | |
| ACTGACAATTCATGATGAAG+TGG | - | chr5_1:60790439-60790458 | Msa0741250:CDS | 35.0% | |
| TTAGCAAATGGTACATTGGT+AGG | - | chr5_1:60790575-60790594 | Msa0741250:CDS | 35.0% | |
| ! | TTACACAAGCAAGGGTTTTA+AGG | + | chr5_1:60790676-60790695 | None:intergenic | 35.0% |
| GGTAACTATTTACACAAGCA+AGG | + | chr5_1:60790685-60790704 | None:intergenic | 35.0% | |
| CTTGTGTAAATAGTTACCAG+AGG | - | chr5_1:60790687-60790706 | Msa0741250:five_prime_UTR | 35.0% | |
| CAATGTTGACGGAGAAGAAA+GGG | + | chr5_1:60785982-60786001 | None:intergenic | 40.0% | |
| TCAATGTTGACGGAGAAGAA+AGG | + | chr5_1:60785983-60786002 | None:intergenic | 40.0% | |
| AGAATCAATTGCTCCTTCTC+CGG | + | chr5_1:60786044-60786063 | None:intergenic | 40.0% | |
| !! | TTCTTGATTCGGAGATGAAG+AGG | - | chr5_1:60786060-60786079 | Msa0741250:three_prime_UTR | 40.0% |
| ! | ATTCGGAGATGAAGAGGTAT+AGG | - | chr5_1:60786066-60786085 | Msa0741250:three_prime_UTR | 40.0% |
| ! | GAGATGAAGAGGTATAGGAA+TGG | - | chr5_1:60786071-60786090 | Msa0741250:three_prime_UTR | 40.0% |
| GGTATAGGAATGGTGAAACA+TGG | - | chr5_1:60786081-60786100 | Msa0741250:three_prime_UTR | 40.0% | |
| ! | TGTCTCAGATGGTGTTTTGT+TGG | - | chr5_1:60786133-60786152 | Msa0741250:three_prime_UTR | 40.0% |
| !! | GTCTCAGATGGTGTTTTGTT+GGG | - | chr5_1:60786134-60786153 | Msa0741250:three_prime_UTR | 40.0% |
| !! | GGTGTTTTGTTGGGTTTAGA+TGG | - | chr5_1:60786143-60786162 | Msa0741250:three_prime_UTR | 40.0% |
| !! | GTTTTGTTGGGTTTAGATGG+TGG | - | chr5_1:60786146-60786165 | Msa0741250:three_prime_UTR | 40.0% |
| CCCCAATCCAAAAAAAAAGG+GGG | + | chr5_1:60786487-60786506 | None:intergenic | 40.0% | |
| !!! | CCCCCTTTTTTTTTGGATTG+GGG | - | chr5_1:60786484-60786503 | Msa0741250:CDS | 40.0% |
| TGGGTGGGAAGAATTCAAAT+AGG | - | chr5_1:60786511-60786530 | Msa0741250:CDS | 40.0% | |
| GGGTGGGAAGAATTCAAATA+GGG | - | chr5_1:60786512-60786531 | Msa0741250:CDS | 40.0% | |
| GGTGGGAAGAATTCAAATAG+GGG | - | chr5_1:60786513-60786532 | Msa0741250:CDS | 40.0% | |
| !! | TAGGAGAATTTTGAGGATGC+TGG | - | chr5_1:60786729-60786748 | Msa0741250:intron | 40.0% |
| !!! | TGGTTTTGGCTTAGGCAATT+TGG | - | chr5_1:60786749-60786768 | Msa0741250:intron | 40.0% |
| !!! | TTTTGGCTTAGGCAATTTGG+TGG | - | chr5_1:60786752-60786771 | Msa0741250:intron | 40.0% |
| ! | TTTGGCTTAGGCAATTTGGT+GGG | - | chr5_1:60786753-60786772 | Msa0741250:intron | 40.0% |
| !! | TTTGTTTCCTGGGTTTGTTG+GGG | - | chr5_1:60786961-60786980 | Msa0741250:intron | 40.0% |
| !!! | GTTGGGGTGTTTTTGTTTTC+TGG | - | chr5_1:60786977-60786996 | Msa0741250:intron | 40.0% |
| !! | TTCTTGTGGATTAGGGATAG+TGG | - | chr5_1:60787073-60787092 | Msa0741250:intron | 40.0% |
| !! | TCTTGTGGATTAGGGATAGT+GGG | - | chr5_1:60787074-60787093 | Msa0741250:intron | 40.0% |
| CTAGGAGAATTTGAGGATGT+TGG | - | chr5_1:60787340-60787359 | Msa0741250:intron | 40.0% | |
| GAATTTGAGGATGTTGGTCA+TGG | - | chr5_1:60787346-60787365 | Msa0741250:intron | 40.0% | |
| GTGTGGTTCAAAACGATCTT+CGG | - | chr5_1:60787632-60787651 | Msa0741250:intron | 40.0% | |
| ATACAGCCAAACATACAGCT+CGG | + | chr5_1:60787659-60787678 | None:intergenic | 40.0% | |
| ATCTGTTGGATGGTTAACAC+CGG | + | chr5_1:60787682-60787701 | None:intergenic | 40.0% | |
| GGAACAATTGGCAAACTTCA+TGG | - | chr5_1:60787978-60787997 | Msa0741250:intron | 40.0% | |
| TGTGTATTAATTGCTGGCAC+AGG | - | chr5_1:60788002-60788021 | Msa0741250:intron | 40.0% | |
| CTGAAGATGGAAAAGAAGCA+AGG | - | chr5_1:60788045-60788064 | Msa0741250:intron | 40.0% | |
| GTGCTAAGAAATAGAGAGAG+AGG | + | chr5_1:60788151-60788170 | None:intergenic | 40.0% | |
| TGTTTATCCAAACAAGGCCA+AGG | + | chr5_1:60788198-60788217 | None:intergenic | 40.0% | |
| AGACTGAGAATCCAATTAGC+AGG | - | chr5_1:60788504-60788523 | Msa0741250:intron | 40.0% | |
| ACTTGAGAGATCTCGACATT+GGG | - | chr5_1:60788683-60788702 | Msa0741250:CDS | 40.0% | |
| TGGTGTCCAAATCACTTAAG+TGG | + | chr5_1:60788719-60788738 | None:intergenic | 40.0% | |
| !!! | CCTAGTTTTGAGTGTAGATG+TGG | + | chr5_1:60788739-60788758 | None:intergenic | 40.0% |
| CCACATCTACACTCAAAACT+AGG | - | chr5_1:60788736-60788755 | Msa0741250:CDS | 40.0% | |
| CATCTACACTCAAAACTAGG+GGG | - | chr5_1:60788739-60788758 | Msa0741250:CDS | 40.0% | |
| !! | ATCAGTTCCGATCGATTTTG+CGG | - | chr5_1:60788771-60788790 | Msa0741250:intron | 40.0% |
| !!! | CAGTATTTTTGGACCGCATT+TGG | - | chr5_1:60788848-60788867 | Msa0741250:intron | 40.0% |
| ! | CCCGTATACCCAATGTTTTA+AGG | + | chr5_1:60788896-60788915 | None:intergenic | 40.0% |
| CTACTCGTCAGCATTGTATT+TGG | + | chr5_1:60789134-60789153 | None:intergenic | 40.0% | |
| ! | TACCCGTCTCTTTGAAAATC+AGG | - | chr5_1:60789310-60789329 | Msa0741250:intron | 40.0% |
| ! | CACCTGATTTTCAAAGAGAC+GGG | + | chr5_1:60789315-60789334 | None:intergenic | 40.0% |
| ! | CCACCTGATTTTCAAAGAGA+CGG | + | chr5_1:60789316-60789335 | None:intergenic | 40.0% |
| TCTGCACAAGATACTACAAC+TGG | + | chr5_1:60789381-60789400 | None:intergenic | 40.0% | |
| AGTTGTAGTATCTTGTGCAG+AGG | - | chr5_1:60789380-60789399 | Msa0741250:intron | 40.0% | |
| TGACAAATTCCACGAAGCAT+CGG | + | chr5_1:60789546-60789565 | None:intergenic | 40.0% | |
| CATGTGTCAACTTATCAGTG+TGG | + | chr5_1:60789713-60789732 | None:intergenic | 40.0% | |
| AATACGTGCTGTATCTGTGT+AGG | - | chr5_1:60789761-60789780 | Msa0741250:intron | 40.0% | |
| CAAACACAAAGTGGGATGTA+GGG | - | chr5_1:60790110-60790129 | Msa0741250:intron | 40.0% | |
| CCTGCAATAAAGACGTAGAA+AGG | + | chr5_1:60790229-60790248 | None:intergenic | 40.0% | |
| CCTTTCTACGTCTTTATTGC+AGG | - | chr5_1:60790226-60790245 | Msa0741250:intron | 40.0% | |
| TATGGTTACACTTACACCTC+TGG | + | chr5_1:60790706-60790725 | None:intergenic | 40.0% | |
| CGATAAAGACAACTCTCGTA+TGG | + | chr5_1:60790724-60790743 | None:intergenic | 40.0% | |
| TATCTGAATGATGCCGGAGA+AGG | - | chr5_1:60786028-60786047 | Msa0741250:three_prime_UTR | 45.0% | |
| GCAACAGCCCTTGAAAGAAT+AGG | + | chr5_1:60786242-60786261 | None:intergenic | 45.0% | |
| ATTCTTTCAAGGGCTGTTGC+TGG | - | chr5_1:60786242-60786261 | Msa0741250:CDS | 45.0% | |
| AAAAACACCCCAACAAACCC+AGG | + | chr5_1:60786971-60786990 | None:intergenic | 45.0% | |
| TGGTCATGGCTTAGGCAATT+TGG | - | chr5_1:60787360-60787379 | Msa0741250:intron | 45.0% | |
| CATGGCTTAGGCAATTTGGT+AGG | - | chr5_1:60787364-60787383 | Msa0741250:intron | 45.0% | |
| GCTGTATGTTTGGCTGTATC+CGG | - | chr5_1:60787660-60787679 | Msa0741250:intron | 45.0% | |
| GCTCTTGCAAGTGGAACAAT+TGG | - | chr5_1:60787966-60787985 | Msa0741250:intron | 45.0% | |
| AGAGAGAGAGGGAAAAGATG+AGG | + | chr5_1:60788139-60788158 | None:intergenic | 45.0% | |
| AAACAAGGCCAAGGTGTAGA+GGG | + | chr5_1:60788189-60788208 | None:intergenic | 45.0% | |
| AATGAGCTTCTGGTGAAGCA+AGG | - | chr5_1:60788471-60788490 | Msa0741250:intron | 45.0% | |
| AAAAAGAACCTTCGGGGTGT+TGG | - | chr5_1:60788639-60788658 | Msa0741250:CDS | 45.0% | |
| ! | AAAAGAACCTTCGGGGTGTT+GGG | - | chr5_1:60788640-60788659 | Msa0741250:CDS | 45.0% |
| CACTTGAGAGATCTCGACAT+TGG | - | chr5_1:60788682-60788701 | Msa0741250:CDS | 45.0% | |
| CTTTCATTTGGCACCCTAAC+AGG | - | chr5_1:60788972-60788991 | Msa0741250:CDS | 45.0% | |
| AAAGACCTTCCCTCCTGTTA+GGG | + | chr5_1:60788988-60789007 | None:intergenic | 45.0% | |
| TGGATATGGAATATCTGCGC+AGG | - | chr5_1:60789070-60789089 | Msa0741250:CDS | 45.0% | |
| ! | GCGGTAATAGAAGCACATGA+TGG | - | chr5_1:60789101-60789120 | Msa0741250:intron | 45.0% |
| ! | ATAGAAGCACATGATGGTCG+TGG | - | chr5_1:60789107-60789126 | Msa0741250:intron | 45.0% |
| !! | AGCCATTTTGAGCTGGATAC+AGG | - | chr5_1:60789275-60789294 | Msa0741250:intron | 45.0% |
| !! | GCCATTTTGAGCTGGATACA+GGG | - | chr5_1:60789276-60789295 | Msa0741250:intron | 45.0% |
| ACCCTGTATCCAGCTCAAAA+TGG | + | chr5_1:60789280-60789299 | None:intergenic | 45.0% | |
| ! | CCGTCTCTTTGAAAATCAGG+TGG | - | chr5_1:60789313-60789332 | Msa0741250:intron | 45.0% |
| GACTTACGCAGATCCATCTT+GGG | - | chr5_1:60789335-60789354 | Msa0741250:intron | 45.0% | |
| GCTAAAATCGGCGCAAGAAT+TGG | - | chr5_1:60789431-60789450 | Msa0741250:intron | 45.0% | |
| AAAGCTGTTGTAGGGAGACT+TGG | - | chr5_1:60789465-60789484 | Msa0741250:intron | 45.0% | |
| AGACTTGGATTGTGCGGTAA+AGG | - | chr5_1:60789480-60789499 | Msa0741250:intron | 45.0% | |
| CTGTATCTGTGTAGGACACT+GGG | - | chr5_1:60789769-60789788 | Msa0741250:intron | 45.0% | |
| GCAAACACAAAGTGGGATGT+AGG | - | chr5_1:60790109-60790128 | Msa0741250:intron | 45.0% | |
| !! | AAGCACCCCAGGAAAGTATT+TGG | + | chr5_1:60790158-60790177 | None:intergenic | 45.0% |
| GATGCACTAACCTTGCTTAG+AGG | - | chr5_1:60790271-60790290 | Msa0741250:intron | 45.0% | |
| AAACTGTGCCTCACTTAGCA+AGG | + | chr5_1:60790618-60790637 | None:intergenic | 45.0% | |
| !!! | TTTTTATTATTTTTATTTTC+TGG | - | chr5_1:60786335-60786354 | Msa0741250:intron | 5.0% |
| !!! | TTTTATTATTTTTATTTTCT+GGG | - | chr5_1:60786336-60786355 | Msa0741250:intron | 5.0% |
| TGACGGAGAAGAAAGGGACA+AGG | + | chr5_1:60785976-60785995 | None:intergenic | 50.0% | |
| !! | TTTGGATTGGGGATAGTGGG+TGG | - | chr5_1:60786495-60786514 | Msa0741250:CDS | 50.0% |
| !! | TTGGATTGGGGATAGTGGGT+GGG | - | chr5_1:60786496-60786515 | Msa0741250:CDS | 50.0% |
| TCACAGATCGCGGAAAACAG+TGG | + | chr5_1:60786694-60786713 | None:intergenic | 50.0% | |
| !!! | GAGGATGCTGGTTTTGGCTT+AGG | - | chr5_1:60786741-60786760 | Msa0741250:intron | 50.0% |
| !! | TGGATTAGGGATAGTGGGCA+GGG | - | chr5_1:60787079-60787098 | Msa0741250:intron | 50.0% |
| AGTGGCTGTAGCAGCTATAG+TGG | - | chr5_1:60787122-60787141 | Msa0741250:intron | 50.0% | |
| GAGGATGTTGGTCATGGCTT+AGG | - | chr5_1:60787352-60787371 | Msa0741250:intron | 50.0% | |
| GCAGATGCGCTTTCAAAGTG+TGG | - | chr5_1:60787615-60787634 | Msa0741250:intron | 50.0% | |
| TTCGGTCCGAGCTGTATGTT+TGG | - | chr5_1:60787650-60787669 | Msa0741250:intron | 50.0% | |
| TCCACTTGCAAGAGCAGCAA+CGG | + | chr5_1:60787961-60787980 | None:intergenic | 50.0% | |
| GGCACAGGAACCATTGCATA+TGG | - | chr5_1:60788017-60788036 | Msa0741250:intron | 50.0% | |
| AGGACCTGTCTTAGGTGACT+GGG | - | chr5_1:60788079-60788098 | Msa0741250:intron | 50.0% | |
| ! | GGTGTAGAGGGGCGTAAAAT+AGG | + | chr5_1:60788177-60788196 | None:intergenic | 50.0% |
| ! | TTTTACGCCCCTCTACACCT+TGG | - | chr5_1:60788178-60788197 | Msa0741250:intron | 50.0% |
| AACAAGGCCAAGGTGTAGAG+GGG | + | chr5_1:60788188-60788207 | None:intergenic | 50.0% | |
| CAAACAAGGCCAAGGTGTAG+AGG | + | chr5_1:60788190-60788209 | None:intergenic | 50.0% | |
| !! | CTCTACACCTTGGCCTTGTT+TGG | - | chr5_1:60788188-60788207 | Msa0741250:intron | 50.0% |
| !! | CTGGTGAAGCAAGGTGTTGT+TGG | - | chr5_1:60788480-60788499 | Msa0741250:intron | 50.0% |
| ! | GGGGTGTTCACATCCAAATG+CGG | + | chr5_1:60788864-60788883 | None:intergenic | 50.0% |
| TCATTTGGCACCCTAACAGG+AGG | - | chr5_1:60788975-60788994 | Msa0741250:CDS | 50.0% | |
| CATTTGGCACCCTAACAGGA+GGG | - | chr5_1:60788976-60788995 | Msa0741250:CDS | 50.0% | |
| GAAAGACCTTCCCTCCTGTT+AGG | + | chr5_1:60788989-60789008 | None:intergenic | 50.0% | |
| GGACTTACGCAGATCCATCT+TGG | - | chr5_1:60789334-60789353 | Msa0741250:intron | 50.0% | |
| GTAGTATCTTGTGCAGAGGC+TGG | - | chr5_1:60789384-60789403 | Msa0741250:intron | 50.0% | |
| GTAGGGAGACTTGGATTGTG+CGG | - | chr5_1:60789474-60789493 | Msa0741250:intron | 50.0% | |
| CACACATTACCGATGCTTCG+TGG | - | chr5_1:60789534-60789553 | Msa0741250:intron | 50.0% | |
| GCTGTATCTGTGTAGGACAC+TGG | - | chr5_1:60789768-60789787 | Msa0741250:intron | 50.0% | |
| ! | GCTTTTCCGCTTGTCATGGT+TGG | - | chr5_1:60790073-60790092 | Msa0741250:intron | 50.0% |
| TTTCCGCTTGTCATGGTTGG+TGG | - | chr5_1:60790076-60790095 | Msa0741250:intron | 50.0% | |
| GGTGCTTCCCATTAGACCTA+AGG | - | chr5_1:60790171-60790190 | Msa0741250:intron | 50.0% | |
| AAACAGGTAGAGCCTGCTGT+TGG | - | chr5_1:60790357-60790376 | Msa0741250:intron | 50.0% | |
| ! | TTGGAGCAGCATGGTTAGCT+TGG | - | chr5_1:60790376-60790395 | Msa0741250:intron | 50.0% |
| TGCCTCACTTAGCAAGGACA+GGG | + | chr5_1:60790612-60790631 | None:intergenic | 50.0% | |
| !! | GTGGATTAGGGATAGTGGGC+AGG | - | chr5_1:60787078-60787097 | Msa0741250:intron | 55.0% |
| !! | ATTAGGGATAGTGGGCAGGG+AGG | - | chr5_1:60787082-60787101 | Msa0741250:intron | 55.0% |
| GGAAAAGAAGCAAGGGCTGC+AGG | - | chr5_1:60788053-60788072 | Msa0741250:intron | 55.0% | |
| CAGGACCTGTCTTAGGTGAC+TGG | - | chr5_1:60788078-60788097 | Msa0741250:intron | 55.0% | |
| GGACCTGTCTTAGGTGACTG+GGG | - | chr5_1:60788080-60788099 | Msa0741250:intron | 55.0% | |
| !! | TTCGGGGTGTTGGGTCACAA+GGG | - | chr5_1:60788649-60788668 | Msa0741250:CDS | 55.0% |
| ATCTGCGCAGGCACTAACTG+CGG | - | chr5_1:60789082-60789101 | Msa0741250:intron | 55.0% | |
| ! | TGGAACGAGTGCTGCAATGC+GGG | + | chr5_1:60789361-60789380 | None:intergenic | 55.0% |
| ! | CTGGAACGAGTGCTGCAATG+CGG | + | chr5_1:60789362-60789381 | None:intergenic | 55.0% |
| ! | AGGCGCTTTTCCGCTTGTCA+TGG | - | chr5_1:60790069-60790088 | Msa0741250:intron | 55.0% |
| ACGCCACCAACCATGACAAG+CGG | + | chr5_1:60790082-60790101 | None:intergenic | 55.0% | |
| AACCATGCTGCTCCAACAGC+AGG | + | chr5_1:60790372-60790391 | None:intergenic | 55.0% | |
| CTCACTTAGCAAGGACAGGG+AGG | + | chr5_1:60790609-60790628 | None:intergenic | 55.0% | |
| CTCCCTGTCCTTGCTAAGTG+AGG | - | chr5_1:60790607-60790626 | Msa0741250:CDS | 55.0% | |
| GTGCCTCACTTAGCAAGGAC+AGG | + | chr5_1:60790613-60790632 | None:intergenic | 55.0% | |
| GCCGTTGCTGCTCTTGCAAG+TGG | - | chr5_1:60787957-60787976 | Msa0741250:intron | 60.0% | |
| CTGCCCCAGTCACCTAAGAC+AGG | + | chr5_1:60788086-60788105 | None:intergenic | 60.0% | |
| CTGTCTTAGGTGACTGGGGC+AGG | - | chr5_1:60788084-60788103 | Msa0741250:intron | 60.0% | |
| CTTGTGACCCAACACCCCGA+AGG | + | chr5_1:60788650-60788669 | None:intergenic | 60.0% | |
| !! | CTTCGGGGTGTTGGGTCACA+AGG | - | chr5_1:60788648-60788667 | Msa0741250:CDS | 60.0% |
| !! | TCGGGGTGTTGGGTCACAAG+GGG | - | chr5_1:60788650-60788669 | Msa0741250:CDS | 60.0% |
| TGGCACCCTAACAGGAGGGA+AGG | - | chr5_1:60788980-60788999 | Msa0741250:CDS | 60.0% | |
| TTGTGCAGAGGCTGGCGATG+AGG | - | chr5_1:60789392-60789411 | Msa0741250:intron | 60.0% | |
| !! | GGTCTAATGGGAAGCACCCC+AGG | + | chr5_1:60790169-60790188 | None:intergenic | 60.0% |
| AGCCTGCTGTTGGAGCAGCA+TGG | - | chr5_1:60790367-60790386 | Msa0741250:intron | 60.0% | |
| GCAGGCGCAGGACCTGTCTT+AGG | - | chr5_1:60788071-60788090 | Msa0741250:intron | 65.0% | |
| GCTGCAATGCGGGCCCAAGA+TGG | + | chr5_1:60789351-60789370 | None:intergenic | 65.0% | |
| GAAGCAAGGGCTGCAGGCGC+AGG | - | chr5_1:60788059-60788078 | Msa0741250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 60785852 | 60790821 | 60785852 | ID=Msa0741250;Name=Msa0741250 |
| chr5_1 | mRNA | 60785852 | 60790821 | 60785852 | ID=Msa0741250-mRNA-1;Parent=Msa0741250;Name=Msa0741250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|1|1|1|1|7|378|368 |
| chr5_1 | exon | 60785852 | 60786310 | 60785852 | ID=Msa0741250-mRNA-1:exon:17624;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60786481 | 60786611 | 60786481 | ID=Msa0741250-mRNA-1:exon:17623;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60787172 | 60787341 | 60787172 | ID=Msa0741250-mRNA-1:exon:17622;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60787475 | 60787603 | 60787475 | ID=Msa0741250-mRNA-1:exon:17621;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60788568 | 60788759 | 60788568 | ID=Msa0741250-mRNA-1:exon:17620;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60788946 | 60789093 | 60788946 | ID=Msa0741250-mRNA-1:exon:17619;Parent=Msa0741250-mRNA-1 |
| chr5_1 | exon | 60790383 | 60790821 | 60790383 | ID=Msa0741250-mRNA-1:exon:17618;Parent=Msa0741250-mRNA-1 |
| chr5_1 | five_prime_UTR | 60790639 | 60790821 | 60790639 | ID=Msa0741250-mRNA-1:five_prime_utr;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60790383 | 60790638 | 60790383 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60788946 | 60789093 | 60788946 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60788568 | 60788759 | 60788568 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60787475 | 60787603 | 60787475 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60787172 | 60787341 | 60787172 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60786481 | 60786611 | 60786481 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | CDS | 60786230 | 60786310 | 60786230 | ID=Msa0741250-mRNA-1:cds;Parent=Msa0741250-mRNA-1 |
| chr5_1 | three_prime_UTR | 60785852 | 60786229 | 60785852 | ID=Msa0741250-mRNA-1:three_prime_utr;Parent=Msa0741250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
