Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864710 | XP_003617930.1 | 97.694 | 477 | 10 | 1 | 2 | 477 | 4 | 480 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864710 | sp|Q9FKH1|SAP_ARATH | 46.364 | 440 | 213 | 8 | 42 | 474 | 20 | 443 | 1.14e-113 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864710 | G7KEL4 | 97.694 | 477 | 10 | 1 | 2 | 477 | 4 | 480 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0864710 | TF | SAP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0864710 | Msa1384600 | 0.992133 | 1.695824e-191 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864710 | MtrunA17_Chr5g0447381 | 98.450 | 387 | 6 | 0 | 91 | 477 | 6 | 392 | 0.0 | 779 |
| Msa0864710 | MtrunA17_Chr5g0447371 | 91.139 | 79 | 6 | 1 | 17 | 94 | 19 | 97 | 2.88e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864710 | AT5G35770.1 | 46.364 | 440 | 213 | 8 | 42 | 474 | 20 | 443 | 1.15e-114 | 345 |
Find 143 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTCTTCTATACATTTAT+TGG | 0.108359 | 5_4:-65237597 | Msa0864710:CDS |
| TTATTAGGGTGCATGAATTT+AGG | 0.164199 | 5_4:-65237785 | Msa0864710:CDS |
| GTCTACATTGCTATTATTAA+TGG | 0.164360 | 5_4:-65238307 | Msa0864710:CDS |
| TCATGGTTAAGAGGTTTATT+AGG | 0.167477 | 5_4:-65237800 | Msa0864710:CDS |
| TGCCATCCTTGAACCGTTTC+CGG | 0.223972 | 5_4:+65238088 | None:intergenic |
| GCGTGAGTAGGTTTAGATTA+AGG | 0.227131 | 5_4:-65237826 | Msa0864710:CDS |
| GGTCTGGTTTGTTGAGAGTA+TGG | 0.250834 | 5_4:-65237739 | Msa0864710:CDS |
| CCTTCTCCATCATCTCTAAC+TGG | 0.275457 | 5_4:+65237677 | None:intergenic |
| GGGTATGTTATAACATATTC+TGG | 0.276633 | 5_4:-65237764 | Msa0864710:CDS |
| TCCGTTTCGGGAATTGTAAT+TGG | 0.284357 | 5_4:-65238367 | Msa0864710:CDS |
| TATTAGGGTGCATGAATTTA+GGG | 0.289123 | 5_4:-65237784 | Msa0864710:CDS |
| GTGCACATGTTAGCACATTT+TGG | 0.290721 | 5_4:-65238426 | Msa0864710:CDS |
| AATGTTGCTGCTGACATTCC+TGG | 0.294438 | 5_4:-65242545 | Msa0864710:CDS |
| GAAGAAGATGAAGGAGGTTC+AGG | 0.311212 | 5_4:+65242503 | None:intergenic |
| CGTGAGTAGGTTTAGATTAA+GGG | 0.323549 | 5_4:-65237825 | Msa0864710:CDS |
| CATGGTTAAGAGGTTTATTA+GGG | 0.328702 | 5_4:-65237799 | Msa0864710:CDS |
| CTCGCCTTCGCGAGATTAGA+TGG | 0.334905 | 5_4:-65238334 | Msa0864710:CDS |
| GCAGGAATGGGCCCGGGTAT+TGG | 0.339605 | 5_4:+65238277 | None:intergenic |
| TCTACATTGCTATTATTAAT+GGG | 0.340728 | 5_4:-65238306 | Msa0864710:CDS |
| TCCAACCATGGTCTTCTATT+CGG | 0.353047 | 5_4:-65238403 | Msa0864710:CDS |
| ATAACATATTCTGGTGGGTC+TGG | 0.372539 | 5_4:-65237755 | Msa0864710:CDS |
| GGCAGCGGCAGATGAGGTTT+TGG | 0.378783 | 5_4:+65238521 | None:intergenic |
| TATATGCTGGCCATGCGGGC+GGG | 0.383931 | 5_4:-65238174 | Msa0864710:CDS |
| AGCTACTACATATTCTCTTT+CGG | 0.384245 | 5_4:+65238021 | None:intergenic |
| ACGGAACAGCGCGTGTTTGT+TGG | 0.386206 | 5_4:-65238127 | Msa0864710:CDS |
| AGGATTCATTGTAGGATCAT+TGG | 0.389444 | 5_4:-65237924 | Msa0864710:CDS |
| CGTGATGTAGTGTCCATAAC+AGG | 0.395954 | 5_4:-65237944 | Msa0864710:CDS |
| GGTTTAGATTAAGGGCTTCA+TGG | 0.398867 | 5_4:-65237817 | Msa0864710:CDS |
| TTCATTAACCGATCCGGAAA+CGG | 0.410471 | 5_4:-65238101 | Msa0864710:CDS |
| CACCGGGAGACATGCTTTAG+TGG | 0.414725 | 5_4:-65238572 | Msa0864710:CDS |
| CCCGAAACGGATTGTGAAAA+CGG | 0.417479 | 5_4:+65238379 | None:intergenic |
| ACATCACGTAATAGAACCTC+TGG | 0.422231 | 5_4:+65237959 | None:intergenic |
| AGCTTGCACAAGTACAAGAT+TGG | 0.422430 | 5_4:-65238002 | Msa0864710:CDS |
| ATATGCTGGCCATGCGGGCG+GGG | 0.423497 | 5_4:-65238173 | Msa0864710:CDS |
| ACCGACCGGTTCAACTAATT+CGG | 0.424968 | 5_4:+65238057 | None:intergenic |
| AGAGGCTCACGAGACGCATC+TGG | 0.428365 | 5_4:-65238669 | Msa0864710:CDS |
| GTAGCCAATGCTTCAACAAC+AGG | 0.432980 | 5_4:+65242443 | None:intergenic |
| TCCAATTACAATTCCCGAAA+CGG | 0.436742 | 5_4:+65238366 | None:intergenic |
| GGCTCTAGTCGTTGGTGGGT+TGG | 0.439072 | 5_4:-65238199 | Msa0864710:CDS |
| TCCTACAATGAATCCTGTTA+TGG | 0.441153 | 5_4:+65237931 | None:intergenic |
| TCTCCCGGTGGTAAAGTTCC+TGG | 0.441224 | 5_4:+65238585 | None:intergenic |
| TCCTTGAACCGTTTCCGGAT+CGG | 0.441558 | 5_4:+65238093 | None:intergenic |
| CCATTAATTGCCCGTCGTGC+AGG | 0.443293 | 5_4:+65238259 | None:intergenic |
| TTAAGGGCTTCATGGTTAAG+AGG | 0.447013 | 5_4:-65237809 | Msa0864710:CDS |
| AATTGCCCGTCGTGCAGGAA+TGG | 0.458917 | 5_4:+65238264 | None:intergenic |
| ATTGCCCGTCGTGCAGGAAT+GGG | 0.459648 | 5_4:+65238265 | None:intergenic |
| ACCGATCCGGAAACGGTTCA+AGG | 0.460400 | 5_4:-65238094 | Msa0864710:CDS |
| ATGGGCCCGGGTATTGGTCC+AGG | 0.465999 | 5_4:+65238283 | None:intergenic |
| GGTTTATATGCTGGCCATGC+GGG | 0.468935 | 5_4:-65238178 | Msa0864710:CDS |
| TGGTGGGTTGGTTTATATGC+TGG | 0.470180 | 5_4:-65238187 | Msa0864710:CDS |
| TGAACCTGTTGTTGAAGCAT+TGG | 0.473412 | 5_4:-65242447 | Msa0864710:CDS |
| GTTAACCGAATTAGTTGAAC+CGG | 0.476077 | 5_4:-65238062 | Msa0864710:CDS |
| ATTGATGCTTCTCATTATCA+TGG | 0.480019 | 5_4:-65242410 | Msa0864710:CDS |
| TTGCCGGCTCTAGTCGTTGG+TGG | 0.480637 | 5_4:-65238204 | Msa0864710:CDS |
| CATATTCTCTTTCGGTGACT+CGG | 0.481267 | 5_4:+65238029 | None:intergenic |
| GAGGAAGAAGCAACATCATA+AGG | 0.481607 | 5_4:+65242569 | None:intergenic |
| TGCCGGCTCTAGTCGTTGGT+GGG | 0.484033 | 5_4:-65238203 | Msa0864710:CDS |
| ATGATAATGAGAAGCATCAA+TGG | 0.484575 | 5_4:+65242412 | None:intergenic |
| ATTGCTATTATTAATGGGCC+TGG | 0.486088 | 5_4:-65238301 | Msa0864710:CDS |
| CGACGAAGCCGCAGGCGAGG+TGG | 0.487527 | 5_4:+65238482 | None:intergenic |
| GGAGTATTAGTAGAATTTGC+CGG | 0.489467 | 5_4:-65238220 | Msa0864710:CDS |
| ACGCTCCCAGTTAGAGATGA+TGG | 0.491914 | 5_4:-65237683 | Msa0864710:CDS |
| ATCTAATCTCGCGAAGGCGA+GGG | 0.494316 | 5_4:+65238336 | None:intergenic |
| TCAAATATGGGACGCGCACA+CGG | 0.496233 | 5_4:-65238146 | Msa0864710:CDS |
| CCGAAACGGATTGTGAAAAC+GGG | 0.497568 | 5_4:+65238380 | None:intergenic |
| TGGCGGTTCATTAACCGATC+CGG | 0.497586 | 5_4:-65238107 | Msa0864710:CDS |
| CATCTAATCTCGCGAAGGCG+AGG | 0.498179 | 5_4:+65238335 | None:intergenic |
| TGATCTCCTGGATCATATTG+TGG | 0.499584 | 5_4:+65238547 | None:intergenic |
| AACGTGCTATGAATGAAGTA+TGG | 0.501621 | 5_4:-65242472 | Msa0864710:CDS |
| TTATATGCTGGCCATGCGGG+CGG | 0.503776 | 5_4:-65238175 | Msa0864710:CDS |
| GAACAGCGCGTGTTTGTTGG+CGG | 0.505393 | 5_4:-65238124 | Msa0864710:CDS |
| TGTCGGAGAGAGTGAGGCAG+CGG | 0.506671 | 5_4:+65238506 | None:intergenic |
| AATGGTGATGTTGTCAATAA+CGG | 0.506851 | 5_4:-65238241 | Msa0864710:CDS |
| TCCATAACAGGATTCATTGT+AGG | 0.509536 | 5_4:-65237932 | Msa0864710:CDS |
| GGAGTAATTGAAGGTGAAGA+TGG | 0.509585 | 5_4:+65242590 | None:intergenic |
| CTTCTCCATCATCTCTAACT+GGG | 0.510502 | 5_4:+65237678 | None:intergenic |
| AACCCACCAACGACTAGAGC+CGG | 0.516179 | 5_4:+65238201 | None:intergenic |
| CTCGCCTGCGGCTTCGTCGA+CGG | 0.523192 | 5_4:-65238478 | Msa0864710:CDS |
| GTCTGGTTTGTTGAGAGTAT+GGG | 0.524284 | 5_4:-65237738 | Msa0864710:CDS |
| TGATGAGAAGTGCTAGGGCC+AGG | 0.527006 | 5_4:+65242527 | None:intergenic |
| GAGTGAGGCAGCGGCAGATG+AGG | 0.527259 | 5_4:+65238515 | None:intergenic |
| GTTCGGATCTACTGTGGCAG+AGG | 0.528047 | 5_4:-65238687 | Msa0864710:CDS |
| GACGAAGCCGCAGGCGAGGT+GGG | 0.529764 | 5_4:+65238483 | None:intergenic |
| GGCGCAGAACATATAGATTG+AGG | 0.532902 | 5_4:-65238648 | Msa0864710:CDS |
| GGCAGTTAGAATACATCTAC+TGG | 0.534095 | 5_4:-65238618 | Msa0864710:CDS |
| GTGGTCCCACAATATGATCC+AGG | 0.534362 | 5_4:-65238553 | Msa0864710:CDS |
| GCCGCAGGCGAGGTGGGTGT+CGG | 0.536831 | 5_4:+65238489 | None:intergenic |
| ATGGAGAGAAGTGTCACGTT+CGG | 0.540623 | 5_4:-65238704 | Msa0864710:CDS |
| TGGTTGTGATGAAGAAGAAG+AGG | 0.543717 | 5_4:+65242610 | None:intergenic |
| GCGCAGAACATATAGATTGA+GGG | 0.543876 | 5_4:-65238647 | Msa0864710:CDS |
| GATCTCCTGGATCATATTGT+GGG | 0.544786 | 5_4:+65238548 | None:intergenic |
| CGTCGTGCAGGAATGGGCCC+GGG | 0.546050 | 5_4:+65238271 | None:intergenic |
| AATTTGCCGGCTCTAGTCGT+TGG | 0.546832 | 5_4:-65238207 | Msa0864710:CDS |
| GTGGTGGAAAGAAGTGGTGT+TGG | 0.551066 | 5_4:-65237878 | Msa0864710:CDS |
| ATGTTATAACATATTCTGGT+GGG | 0.553968 | 5_4:-65237760 | Msa0864710:CDS |
| TCAGGTTGATGAGAAGTGCT+AGG | 0.553999 | 5_4:+65242521 | None:intergenic |
| AATGGGCCTGGACCAATACC+CGG | 0.556865 | 5_4:-65238289 | Msa0864710:CDS |
| GCCGAATAGAAGACCATGGT+TGG | 0.558339 | 5_4:+65238402 | None:intergenic |
| ACATCATAAGGAGTAATTGA+AGG | 0.563591 | 5_4:+65242581 | None:intergenic |
| TCTACTGGCATCGAACGGCC+AGG | 0.565427 | 5_4:-65238603 | Msa0864710:CDS |
| TTTGTTGTGGTGGAAAGAAG+TGG | 0.565574 | 5_4:-65237884 | Msa0864710:CDS |
| TTTGAAAAGCCCCGCCCGCA+TGG | 0.566257 | 5_4:+65238164 | None:intergenic |
| TGGCGAGAGGAAGAAGATGA+AGG | 0.567730 | 5_4:+65242494 | None:intergenic |
| GAAGTGGTGTTGGAACTGTT+CGG | 0.568741 | 5_4:-65237868 | Msa0864710:CDS |
| GGTGGGTGTCGGAGAGAGTG+AGG | 0.568818 | 5_4:+65238500 | None:intergenic |
| CGTCGACGAAGCCGCAGGCG+AGG | 0.570217 | 5_4:+65238479 | None:intergenic |
| ATGGGCCTGGACCAATACCC+GGG | 0.577553 | 5_4:-65238288 | Msa0864710:CDS |
| GTGACTCGGACTCGACCGAC+CGG | 0.586956 | 5_4:+65238043 | None:intergenic |
| ATCCGGAAACGGTTCAAGGA+TGG | 0.588593 | 5_4:-65238090 | Msa0864710:CDS |
| GACCACTAAAGCATGTCTCC+CGG | 0.592351 | 5_4:+65238570 | None:intergenic |
| GCATGCAGGTTTGTTCAACA+TGG | 0.597878 | 5_4:-65238723 | Msa0864710:intron |
| AATGTCAGCAGCAACATTTG+AGG | 0.598135 | 5_4:+65242550 | None:intergenic |
| TGGTTTATATGCTGGCCATG+CGG | 0.599044 | 5_4:-65238179 | Msa0864710:CDS |
| ACTGCCGTCGACGAAGCCGC+AGG | 0.600288 | 5_4:+65238474 | None:intergenic |
| ACGGCCAGGAACTTTACCAC+CGG | 0.601863 | 5_4:-65238589 | Msa0864710:CDS |
| ATAATTTCGAGCGCGTGAGT+AGG | 0.604680 | 5_4:-65237838 | Msa0864710:CDS |
| CGGCCAGGAACTTTACCACC+GGG | 0.607000 | 5_4:-65238588 | Msa0864710:CDS |
| CAGGTTGATGAGAAGTGCTA+GGG | 0.609841 | 5_4:+65242522 | None:intergenic |
| CCAGTTAGAGATGATGGAGA+AGG | 0.611674 | 5_4:-65237677 | Msa0864710:CDS |
| GATGGAGAAGGACAAGTACA+TGG | 0.613846 | 5_4:-65237665 | Msa0864710:CDS |
| TCCGACACCCACCTCGCCTG+CGG | 0.615146 | 5_4:-65238490 | Msa0864710:CDS |
| ATCTCCATCTAATCTCGCGA+AGG | 0.620003 | 5_4:+65238330 | None:intergenic |
| TATGTTATAACATATTCTGG+TGG | 0.621514 | 5_4:-65237761 | Msa0864710:CDS |
| ATTCATAGCACGTTGGCGAG+AGG | 0.622029 | 5_4:+65242481 | None:intergenic |
| ATCATTGGATGTTAGCCATG+AGG | 0.625954 | 5_4:-65237909 | Msa0864710:CDS |
| TGCTAACATGTGCACCGGTG+TGG | 0.634853 | 5_4:+65238434 | None:intergenic |
| ACAAGTACATGGCAATAGCA+TGG | 0.638195 | 5_4:-65237654 | Msa0864710:CDS |
| CATATAGATTGAGGGACACG+TGG | 0.643287 | 5_4:-65238639 | Msa0864710:CDS |
| CGGTGTGGAGATCGAAGAGT+CGG | 0.650728 | 5_4:+65238449 | None:intergenic |
| CCGGGCCCATTCCTGCACGA+CGG | 0.655323 | 5_4:-65238270 | Msa0864710:CDS |
| AAATGTGCTAACATGTGCAC+CGG | 0.656474 | 5_4:+65238429 | None:intergenic |
| ATACATCTACTGGCATCGAA+CGG | 0.658565 | 5_4:-65238608 | Msa0864710:CDS |
| CATCACGTAATAGAACCTCT+GGG | 0.662087 | 5_4:+65237960 | None:intergenic |
| CGAGAGGAAGAAGATGAAGG+AGG | 0.662653 | 5_4:+65242497 | None:intergenic |
| CGACTCTTCGATCTCCACAC+CGG | 0.677791 | 5_4:-65238448 | Msa0864710:CDS |
| ACCGAATTAGTTGAACCGGT+CGG | 0.683053 | 5_4:-65238058 | Msa0864710:CDS |
| TGTCACGTTCGGATCTACTG+TGG | 0.685634 | 5_4:-65238693 | Msa0864710:CDS |
| TTTCAACTTAAGAAACCCAG+AGG | 0.687724 | 5_4:-65237975 | Msa0864710:CDS |
| ATGGGACATACATGAACCTG+CGG | 0.688958 | 5_4:-65237720 | Msa0864710:CDS |
| CACTAAAGCATGTCTCCCGG+TGG | 0.706707 | 5_4:+65238573 | None:intergenic |
| GGTTGCTAATCAAACTCACG+TGG | 0.706916 | 5_4:-65237633 | Msa0864710:CDS |
| ACGGGCCGAATAGAAGACCA+TGG | 0.711737 | 5_4:+65238398 | None:intergenic |
| ATACTTCATTCATAGCACGT+TGG | 0.720163 | 5_4:+65242474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTAATATAATCAAAT+AGG | - | chr5_4:65237918-65237937 | Msa0864710:CDS | 10.0% |
| !!! | TCTTATTATTTTTACATAAA+GGG | + | chr5_4:65238128-65238147 | None:intergenic | 10.0% |
| !!! | TTCTTATTATTTTTACATAA+AGG | + | chr5_4:65238129-65238148 | None:intergenic | 10.0% |
| !!! | TGAATTTTATTTTTTTTTGA+AGG | - | chr5_4:65239165-65239184 | Msa0864710:intron | 10.0% |
| !!! | AATAATACAAGAAATATTTT+AGG | - | chr5_4:65239336-65239355 | Msa0864710:intron | 10.0% |
| !!! | AGAGTATTATAATTATATAA+TGG | - | chr5_4:65239753-65239772 | Msa0864710:intron | 10.0% |
| !!! | AAACCTATTTTAAAATTAAA+TGG | + | chr5_4:65239946-65239965 | None:intergenic | 10.0% |
| !! | TATAATACCAAATGAAAAAA+AGG | + | chr5_4:65238445-65238464 | None:intergenic | 15.0% |
| !!! | TTAGTTTCTAAAAACATTTA+AGG | - | chr5_4:65239131-65239150 | Msa0864710:intron | 15.0% |
| !!! | TTTCACTCAATTTTTTTTTA+GGG | + | chr5_4:65239460-65239479 | None:intergenic | 15.0% |
| !!! | TTTTCACTCAATTTTTTTTT+AGG | + | chr5_4:65239461-65239480 | None:intergenic | 15.0% |
| !! | TTACAAAAAAAATGTGTATT+TGG | + | chr5_4:65239663-65239682 | None:intergenic | 15.0% |
| !! | AATTATATAATGGCATAAAA+TGG | - | chr5_4:65239763-65239782 | Msa0864710:intron | 15.0% |
| !! | ATCATACTATTTAATGTATT+GGG | + | chr5_4:65239899-65239918 | None:intergenic | 15.0% |
| !! | TATCATACTATTTAATGTAT+TGG | + | chr5_4:65239900-65239919 | None:intergenic | 15.0% |
| !!! | GATCCATTTAATTTTAAAAT+AGG | - | chr5_4:65239940-65239959 | Msa0864710:intron | 15.0% |
| !!! | ATTAATATTACTTGTTAGTA+AGG | + | chr5_4:65240158-65240177 | None:intergenic | 15.0% |
| !! | TTATACACAATATATTTACA+TGG | - | chr5_4:65240368-65240387 | Msa0864710:intron | 15.0% |
| !! | AATGAAATATTAGTAAAACA+TGG | + | chr5_4:65240699-65240718 | None:intergenic | 15.0% |
| !! | ATAAAATTTATGATATGATG+TGG | + | chr5_4:65240819-65240838 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | + | chr5_4:65240897-65240916 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr5_4:65240967-65240986 | None:intergenic | 15.0% |
| !!! | GTCAATTTTCTATTTAATTT+TGG | - | chr5_4:65241285-65241304 | Msa0864710:intron | 15.0% |
| !!! | TTTTTTTTTTTTGCATGATA+TGG | - | chr5_4:65241429-65241448 | Msa0864710:intron | 15.0% |
| !!! | TTTTTTTTTTTGCATGATAT+GGG | - | chr5_4:65241430-65241449 | Msa0864710:intron | 15.0% |
| !! | ACAAAATAATTCTTCATTGT+TGG | + | chr5_4:65237969-65237988 | None:intergenic | 20.0% |
| !! | TCAGAAAATAGACAAATTAT+TGG | - | chr5_4:65238055-65238074 | Msa0864710:CDS | 20.0% |
| !! | AAAATACTGTTCCTTAAAAA+CGG | - | chr5_4:65238327-65238346 | Msa0864710:CDS | 20.0% |
| !! | CATTTGGTATTATATGAAAA+AGG | - | chr5_4:65238451-65238470 | Msa0864710:CDS | 20.0% |
| !! | TATCTAATCTAATAAATCCA+TGG | - | chr5_4:65238553-65238572 | Msa0864710:CDS | 20.0% |
| !!! | GATGTTTTTAGATAGAAAAA+AGG | + | chr5_4:65238583-65238602 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTTAAATAACACA+AGG | - | chr5_4:65238636-65238655 | Msa0864710:CDS | 20.0% |
| !!! | CAATGAAAATGTACAATTTT+TGG | - | chr5_4:65238787-65238806 | Msa0864710:intron | 20.0% |
| !! | ATAATAATATGAAACCAAAC+CGG | + | chr5_4:65238814-65238833 | None:intergenic | 20.0% |
| !! | TTTCTACGAATATAATCTTA+GGG | + | chr5_4:65238906-65238925 | None:intergenic | 20.0% |
| !! | ATTTCTACGAATATAATCTT+AGG | + | chr5_4:65238907-65238926 | None:intergenic | 20.0% |
| !!! | GTTTGAATTGTTATTATTGT+TGG | - | chr5_4:65239197-65239216 | Msa0864710:intron | 20.0% |
| !!! | AAGAACAATACCTTTTTTAA+GGG | + | chr5_4:65239256-65239275 | None:intergenic | 20.0% |
| !!! | TAAGAACAATACCTTTTTTA+AGG | + | chr5_4:65239257-65239276 | None:intergenic | 20.0% |
| !!! | TTTTATTCCCAACTTTTTTT+TGG | - | chr5_4:65239391-65239410 | Msa0864710:intron | 20.0% |
| !!! | TAGAATTGATTCTAATTGAA+GGG | + | chr5_4:65239573-65239592 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAAGAAAGGAGA+CGG | - | chr5_4:65239728-65239747 | Msa0864710:intron | 20.0% |
| !!! | TTTTAAATTGTTTCTTCCTT+TGG | - | chr5_4:65240399-65240418 | Msa0864710:intron | 20.0% |
| !!! | TTTAAATTGTTTCTTCCTTT+GGG | - | chr5_4:65240400-65240419 | Msa0864710:intron | 20.0% |
| !! | AAATGAAAGTGAAATATATG+TGG | - | chr5_4:65240640-65240659 | Msa0864710:intron | 20.0% |
| !! | AATGAAAGTGAAATATATGT+GGG | - | chr5_4:65240641-65240660 | Msa0864710:intron | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | + | chr5_4:65240898-65240917 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr5_4:65240933-65240952 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr5_4:65240934-65240953 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | + | chr5_4:65241031-65241050 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | + | chr5_4:65241032-65241051 | None:intergenic | 20.0% |
| !!! | TCTACATTGCTATTATTAAT+GGG | - | chr5_4:65241897-65241916 | Msa0864710:intron | 20.0% |
| ! | AAATGTGACCTGAAAAATAA+TGG | + | chr5_4:65237845-65237864 | None:intergenic | 25.0% |
| ! | AATCAAATAGGTCATGTTTA+AGG | - | chr5_4:65237930-65237949 | Msa0864710:CDS | 25.0% |
| ! | ATTGAATGTACCAATGTATT+GGG | + | chr5_4:65238246-65238265 | None:intergenic | 25.0% |
| ! | AATTGAATGTACCAATGTAT+TGG | + | chr5_4:65238247-65238266 | None:intergenic | 25.0% |
| ! | GTACATTCAATTCAACTAAT+TGG | - | chr5_4:65238255-65238274 | Msa0864710:CDS | 25.0% |
| ! | TCAATTCAACTAATTGGATT+AGG | - | chr5_4:65238261-65238280 | Msa0864710:CDS | 25.0% |
| !! | TTTAAGGAACAGTATTTTCT+AGG | + | chr5_4:65238325-65238344 | None:intergenic | 25.0% |
| ! | AATACCAAATGAAAAAAAGG+AGG | + | chr5_4:65238442-65238461 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTTTACCTTTCT+TGG | - | chr5_4:65238480-65238499 | Msa0864710:CDS | 25.0% |
| ! | TTAAAAAGCTCAGTCAAAAT+AGG | + | chr5_4:65238514-65238533 | None:intergenic | 25.0% |
| !! | TTTTCTTAAATAACACAAGG+AGG | - | chr5_4:65238639-65238658 | Msa0864710:CDS | 25.0% |
| ! | TTTCTTAAATAACACAAGGA+GGG | - | chr5_4:65238640-65238659 | Msa0864710:CDS | 25.0% |
| !!! | AAAATGTACAATTTTTGGTC+CGG | - | chr5_4:65238792-65238811 | Msa0864710:intron | 25.0% |
| ! | ATTCTGAATTCAAATCCAAA+AGG | + | chr5_4:65238995-65239014 | None:intergenic | 25.0% |
| ! | TGAGTAAAATGACATTATTC+AGG | + | chr5_4:65239053-65239072 | None:intergenic | 25.0% |
| ! | ATCTTCTAATCCCTTAAAAA+AGG | - | chr5_4:65239243-65239262 | Msa0864710:intron | 25.0% |
| !! | GTAGAATTGATTCTAATTGA+AGG | + | chr5_4:65239574-65239593 | None:intergenic | 25.0% |
| !!! | TGTGTATTTGGTTCTAATTT+TGG | + | chr5_4:65239651-65239670 | None:intergenic | 25.0% |
| ! | TATAAAAGCCAAAAATCACA+TGG | - | chr5_4:65239803-65239822 | Msa0864710:intron | 25.0% |
| ! | ATATGCATATATATGTGCTT+GGG | + | chr5_4:65240005-65240024 | None:intergenic | 25.0% |
| ! | AATATGCATATATATGTGCT+TGG | + | chr5_4:65240006-65240025 | None:intergenic | 25.0% |
| ! | TTTAAAAAGTGAACTACTCT+TGG | - | chr5_4:65240205-65240224 | Msa0864710:intron | 25.0% |
| ! | AATATTTCAATGCATACAAG+AGG | + | chr5_4:65240328-65240347 | None:intergenic | 25.0% |
| ! | TTTCATTTCCAATAAAGGTA+TGG | + | chr5_4:65240628-65240647 | None:intergenic | 25.0% |
| ! | TTCACTTTCATTTCCAATAA+AGG | + | chr5_4:65240633-65240652 | None:intergenic | 25.0% |
| ! | ATGAAAGTGAAATATATGTG+GGG | - | chr5_4:65240642-65240661 | Msa0864710:intron | 25.0% |
| ! | ACTAGCATTAGATTAATATG+AGG | + | chr5_4:65240784-65240803 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr5_4:65241008-65241027 | None:intergenic | 25.0% |
| !! | AGAAAAGTGTATAAATGAAG+GGG | + | chr5_4:65241030-65241049 | None:intergenic | 25.0% |
| ! | GAAGATATTCTCAATCAAAA+AGG | + | chr5_4:65241150-65241169 | None:intergenic | 25.0% |
| ! | ATTCTTCCATAGATAAGATA+TGG | + | chr5_4:65241175-65241194 | None:intergenic | 25.0% |
| ! | AATAGAAAATTGACTGTTCA+AGG | + | chr5_4:65241279-65241298 | None:intergenic | 25.0% |
| ! | TAGAATATGCATATAGGTAT+AGG | + | chr5_4:65241313-65241332 | None:intergenic | 25.0% |
| ! | ACACTATAGAATATGCATAT+AGG | + | chr5_4:65241319-65241338 | None:intergenic | 25.0% |
| !! | GTCTACATTGCTATTATTAA+TGG | - | chr5_4:65241896-65241915 | Msa0864710:intron | 25.0% |
| ! | TATGTTATAACATATTCTGG+TGG | - | chr5_4:65242442-65242461 | Msa0864710:CDS | 25.0% |
| ! | ATGTTATAACATATTCTGGT+GGG | - | chr5_4:65242443-65242462 | Msa0864710:CDS | 25.0% |
| ! | TGACTCTTCTATACATTTAT+TGG | - | chr5_4:65242606-65242625 | Msa0864710:CDS | 25.0% |
| ACATCATAAGGAGTAATTGA+AGG | + | chr5_4:65237625-65237644 | None:intergenic | 30.0% | |
| !! | ATGATAATGAGAAGCATCAA+TGG | + | chr5_4:65237794-65237813 | None:intergenic | 30.0% |
| ATTGATGCTTCTCATTATCA+TGG | - | chr5_4:65237793-65237812 | Msa0864710:CDS | 30.0% | |
| ! | ATTTTCTGAACTGAAAAAGC+TGG | + | chr5_4:65238044-65238063 | None:intergenic | 30.0% |
| !!! | CTTAAAAGTAGCCGTTTTTA+AGG | + | chr5_4:65238341-65238360 | None:intergenic | 30.0% |
| !!! | CTTAAAAACGGCTACTTTTA+AGG | - | chr5_4:65238339-65238358 | Msa0864710:CDS | 30.0% |
| ! | CATTTACCCTTTTTGTGAAA+GGG | + | chr5_4:65238393-65238412 | None:intergenic | 30.0% |
| ! | ACATTTACCCTTTTTGTGAA+AGG | + | chr5_4:65238394-65238413 | None:intergenic | 30.0% |
| ! | TTTTCTTGTATGTTCTGTCT+TGG | - | chr5_4:65238415-65238434 | Msa0864710:CDS | 30.0% |
| !! | GCTTTTTACTTTGTTTCAGA+AGG | - | chr5_4:65238612-65238631 | Msa0864710:CDS | 30.0% |
| ! | TCAGAATAGTACTCACATTT+TGG | - | chr5_4:65239008-65239027 | Msa0864710:intron | 30.0% |
| ! | TGCTTAATTTTACCACGAAT+GGG | + | chr5_4:65239102-65239121 | None:intergenic | 30.0% |
| TTAAGGGATTAGAAGATCAA+TGG | + | chr5_4:65239240-65239259 | None:intergenic | 30.0% | |
| ACACAGACCAAAAAAAAGTT+GGG | + | chr5_4:65239401-65239420 | None:intergenic | 30.0% | |
| AACACAGACCAAAAAAAAGT+TGG | + | chr5_4:65239402-65239421 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTTTGGTCTGTGTT+AGG | - | chr5_4:65239402-65239421 | Msa0864710:intron | 30.0% |
| !!! | GTATTTGGTTCTAATTTTGG+AGG | + | chr5_4:65239648-65239667 | None:intergenic | 30.0% |
| ACATGTGTATTCAATTGACA+GGG | + | chr5_4:65239694-65239713 | None:intergenic | 30.0% | |
| TACATGTGTATTCAATTGAC+AGG | + | chr5_4:65239695-65239714 | None:intergenic | 30.0% | |
| ! | ATTGGAATCCATGTGATTTT+TGG | + | chr5_4:65239814-65239833 | None:intergenic | 30.0% |
| AACATAGGTACAAAAGGAAT+GGG | + | chr5_4:65239854-65239873 | None:intergenic | 30.0% | |
| TAACATAGGTACAAAAGGAA+TGG | + | chr5_4:65239855-65239874 | None:intergenic | 30.0% | |
| TATGCATATATATGTGCTTG+GGG | + | chr5_4:65240004-65240023 | None:intergenic | 30.0% | |
| ! | TACAAAAGTGCATTTATCGA+AGG | - | chr5_4:65240111-65240130 | Msa0864710:intron | 30.0% |
| AAGTTTACTCTTAACACAGT+TGG | - | chr5_4:65240229-65240248 | Msa0864710:intron | 30.0% | |
| AGTTTACTCTTAACACAGTT+GGG | - | chr5_4:65240230-65240249 | Msa0864710:intron | 30.0% | |
| TGAGAATAACAAAAACCCAA+AGG | + | chr5_4:65240418-65240437 | None:intergenic | 30.0% | |
| ATATTTGTCTTTAGGCTTGT+TGG | - | chr5_4:65240540-65240559 | Msa0864710:intron | 30.0% | |
| !! | AAGTTGATAGATTCTCTTGT+TGG | - | chr5_4:65240584-65240603 | Msa0864710:intron | 30.0% |
| TCTAATGCTAGTATAGACTA+TGG | - | chr5_4:65240792-65240811 | Msa0864710:intron | 30.0% | |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr5_4:65240919-65240938 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr5_4:65240920-65240939 | None:intergenic | 30.0% |
| GATATTCTCAATCAAAAAGG+AGG | + | chr5_4:65241147-65241166 | None:intergenic | 30.0% | |
| ! | ATGGGTCTTGATGTTTTATA+TGG | - | chr5_4:65241448-65241467 | Msa0864710:intron | 30.0% |
| ! | GTCTTGATGTTTTATATGGT+TGG | - | chr5_4:65241452-65241471 | Msa0864710:intron | 30.0% |
| ! | AATGGTGATGTTGTCAATAA+CGG | - | chr5_4:65241962-65241981 | Msa0864710:intron | 30.0% |
| AGCTACTACATATTCTCTTT+CGG | + | chr5_4:65242185-65242204 | None:intergenic | 30.0% | |
| TCATGGTTAAGAGGTTTATT+AGG | - | chr5_4:65242403-65242422 | Msa0864710:CDS | 30.0% | |
| CATGGTTAAGAGGTTTATTA+GGG | - | chr5_4:65242404-65242423 | Msa0864710:CDS | 30.0% | |
| TTATTAGGGTGCATGAATTT+AGG | - | chr5_4:65242418-65242437 | Msa0864710:CDS | 30.0% | |
| TATTAGGGTGCATGAATTTA+GGG | - | chr5_4:65242419-65242438 | Msa0864710:CDS | 30.0% | |
| GGGTATGTTATAACATATTC+TGG | - | chr5_4:65242439-65242458 | Msa0864710:CDS | 30.0% | |
| ATACTTCATTCATAGCACGT+TGG | + | chr5_4:65237732-65237751 | None:intergenic | 35.0% | |
| AACGTGCTATGAATGAAGTA+TGG | - | chr5_4:65237731-65237750 | Msa0864710:CDS | 35.0% | |
| !! | TGCTCTTGCCATTATTTTTC+AGG | - | chr5_4:65237834-65237853 | Msa0864710:CDS | 35.0% |
| GAACTTTAGACCCAATACAT+TGG | - | chr5_4:65238233-65238252 | Msa0864710:CDS | 35.0% | |
| !!! | AAAAACGGCTACTTTTAAGG+CGG | - | chr5_4:65238342-65238361 | Msa0864710:CDS | 35.0% |
| AAAGGGACACACATTTAGTT+TGG | + | chr5_4:65238376-65238395 | None:intergenic | 35.0% | |
| !!! | TGGACCTCCTTTTTTTCATT+TGG | - | chr5_4:65238435-65238454 | Msa0864710:CDS | 35.0% |
| ATAGGATTTCATGCCAAGAA+AGG | + | chr5_4:65238496-65238515 | None:intergenic | 35.0% | |
| !! | TAGAGTACTGTATGGTAGAA+AGG | + | chr5_4:65238702-65238721 | None:intergenic | 35.0% |
| !! | TAGAGTAGTAGAGTACTGTA+TGG | + | chr5_4:65238710-65238729 | None:intergenic | 35.0% |
| CTCTAACTAACTGTGTAAAG+TGG | + | chr5_4:65238767-65238786 | None:intergenic | 35.0% | |
| AATTAGCTAGAGAAAAGCTG+TGG | + | chr5_4:65238876-65238895 | None:intergenic | 35.0% | |
| ! | ACAGCTTTTCTCTAGCTAAT+TGG | - | chr5_4:65238875-65238894 | Msa0864710:intron | 35.0% |
| TATTCGTAGAAATCTGCAGT+TGG | - | chr5_4:65238914-65238933 | Msa0864710:intron | 35.0% | |
| CTGAATTCAAATCCAAAAGG+TGG | + | chr5_4:65238992-65239011 | None:intergenic | 35.0% | |
| GTAGAATTATTACCCATTCG+TGG | - | chr5_4:65239087-65239106 | Msa0864710:intron | 35.0% | |
| ! | GTGCTTAATTTTACCACGAA+TGG | + | chr5_4:65239103-65239122 | None:intergenic | 35.0% |
| AGGAAAGTCTGCACATAAAA+TGG | - | chr5_4:65239356-65239375 | Msa0864710:intron | 35.0% | |
| ACATAGGTACAAAAGGAATG+GGG | + | chr5_4:65239853-65239872 | None:intergenic | 35.0% | |
| GCTTCTAACATAGGTACAAA+AGG | + | chr5_4:65239860-65239879 | None:intergenic | 35.0% | |
| CTATGTTAGAAGCTCTCATT+GGG | - | chr5_4:65239867-65239886 | Msa0864710:intron | 35.0% | |
| ATGCATATATATGTGCTTGG+GGG | + | chr5_4:65240003-65240022 | None:intergenic | 35.0% | |
| TCTTAACACAGTTGGGTTTA+GGG | - | chr5_4:65240237-65240256 | Msa0864710:intron | 35.0% | |
| ! | ATTGCTACTCCTTTAGAAGA+TGG | - | chr5_4:65240472-65240491 | Msa0864710:intron | 35.0% |
| ! | TTGCTACTCCTTTAGAAGAT+GGG | - | chr5_4:65240473-65240492 | Msa0864710:intron | 35.0% |
| ATGACCGGATATTTGTCTTT+AGG | - | chr5_4:65240532-65240551 | Msa0864710:intron | 35.0% | |
| CAAGCCTAAAGACAAATATC+CGG | + | chr5_4:65240539-65240558 | None:intergenic | 35.0% | |
| ! | TTCCAATAAAGGTATGGTCA+AGG | + | chr5_4:65240622-65240641 | None:intergenic | 35.0% |
| AAAAATGGGTCAGTTATTCC+AGG | + | chr5_4:65240883-65240902 | None:intergenic | 35.0% | |
| TGTATAAATGAAGGGGAAAG+TGG | + | chr5_4:65241023-65241042 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr5_4:65241053-65241072 | Msa0864710:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr5_4:65241066-65241085 | Msa0864710:intron | 35.0% | |
| ! | GAAGGGGAGTATATGATAAT+AGG | - | chr5_4:65241093-65241112 | Msa0864710:intron | 35.0% |
| TCAATCAAAAAGGAGGTAGT+TGG | + | chr5_4:65241140-65241159 | None:intergenic | 35.0% | |
| CTTCCACCATATCTTATCTA+TGG | - | chr5_4:65241166-65241185 | Msa0864710:intron | 35.0% | |
| CTTCCATAGATAAGATATGG+TGG | + | chr5_4:65241172-65241191 | None:intergenic | 35.0% | |
| TCCAATTACAATTCCCGAAA+CGG | + | chr5_4:65241840-65241859 | None:intergenic | 35.0% | |
| ! | ATTGCTATTATTAATGGGCC+TGG | - | chr5_4:65241902-65241921 | Msa0864710:intron | 35.0% |
| ! | GGAGTATTAGTAGAATTTGC+CGG | - | chr5_4:65241983-65242002 | Msa0864710:intron | 35.0% |
| GTTAACCGAATTAGTTGAAC+CGG | - | chr5_4:65242141-65242160 | Msa0864710:intron | 35.0% | |
| TTTCAACTTAAGAAACCCAG+AGG | - | chr5_4:65242228-65242247 | Msa0864710:intron | 35.0% | |
| TCCATAACAGGATTCATTGT+AGG | - | chr5_4:65242271-65242290 | Msa0864710:intron | 35.0% | |
| TCCTACAATGAATCCTGTTA+TGG | + | chr5_4:65242275-65242294 | None:intergenic | 35.0% | |
| AGGATTCATTGTAGGATCAT+TGG | - | chr5_4:65242279-65242298 | Msa0864710:intron | 35.0% | |
| CGTGAGTAGGTTTAGATTAA+GGG | - | chr5_4:65242378-65242397 | Msa0864710:CDS | 35.0% | |
| TGGTTGTGATGAAGAAGAAG+AGG | + | chr5_4:65237596-65237615 | None:intergenic | 40.0% | |
| GGAGTAATTGAAGGTGAAGA+TGG | + | chr5_4:65237616-65237635 | None:intergenic | 40.0% | |
| GAGGAAGAAGCAACATCATA+AGG | + | chr5_4:65237637-65237656 | None:intergenic | 40.0% | |
| AATGTCAGCAGCAACATTTG+AGG | + | chr5_4:65237656-65237675 | None:intergenic | 40.0% | |
| TGAACCTGTTGTTGAAGCAT+TGG | - | chr5_4:65237756-65237775 | Msa0864710:CDS | 40.0% | |
| !!! | AAAACGGCTACTTTTAAGGC+GGG | - | chr5_4:65238343-65238362 | Msa0864710:CDS | 40.0% |
| TGTGTGTCCCTTTCACAAAA+AGG | - | chr5_4:65238383-65238402 | Msa0864710:CDS | 40.0% | |
| GTGTGTCCCTTTCACAAAAA+GGG | - | chr5_4:65238384-65238403 | Msa0864710:CDS | 40.0% | |
| GATAGAAAAAAGGCAAGCCA+TGG | + | chr5_4:65238573-65238592 | None:intergenic | 40.0% | |
| !!! | GTACAATTTTTGGTCCGGTT+TGG | - | chr5_4:65238797-65238816 | Msa0864710:intron | 40.0% |
| ACCCAACTGTGCATATGTTA+GGG | + | chr5_4:65238945-65238964 | None:intergenic | 40.0% | |
| AACCCAACTGTGCATATGTT+AGG | + | chr5_4:65238946-65238965 | None:intergenic | 40.0% | |
| TAACATATGCACAGTTGGGT+TGG | - | chr5_4:65238945-65238964 | Msa0864710:intron | 40.0% | |
| ! | AAGTGGTTAGATCCACCTTT+TGG | - | chr5_4:65238977-65238996 | Msa0864710:intron | 40.0% |
| ! | TTGGTCTGTGTTAGGTTTTG+CGG | - | chr5_4:65239410-65239429 | Msa0864710:intron | 40.0% |
| GGTATTGTCAAGGCAAGAAT+TGG | + | chr5_4:65239832-65239851 | None:intergenic | 40.0% | |
| !! | AAAGGAATGGGGTATTGTCA+AGG | + | chr5_4:65239842-65239861 | None:intergenic | 40.0% |
| CCAATGAGAGCTTCTAACAT+AGG | + | chr5_4:65239869-65239888 | None:intergenic | 40.0% | |
| CCTATGTTAGAAGCTCTCAT+TGG | - | chr5_4:65239866-65239885 | Msa0864710:intron | 40.0% | |
| TGCATATATATGTGCTTGGG+GGG | + | chr5_4:65240002-65240021 | None:intergenic | 40.0% | |
| CTCTTAACACAGTTGGGTTT+AGG | - | chr5_4:65240236-65240255 | Msa0864710:intron | 40.0% | |
| ! | TGCTACTCCTTTAGAAGATG+GGG | - | chr5_4:65240474-65240493 | Msa0864710:intron | 40.0% |
| CATGTAGCAAGAAAGATGAC+CGG | - | chr5_4:65240517-65240536 | Msa0864710:intron | 40.0% | |
| !! | TTTGTCTTTAGGCTTGTTGG+AGG | - | chr5_4:65240543-65240562 | Msa0864710:intron | 40.0% |
| !! | TTGTCTTTAGGCTTGTTGGA+GGG | - | chr5_4:65240544-65240563 | Msa0864710:intron | 40.0% |
| AGCCTTGACCATACCTTTAT+TGG | - | chr5_4:65240617-65240636 | Msa0864710:intron | 40.0% | |
| ATCAAAAGCTATAGCTAGCG+TGG | + | chr5_4:65240670-65240689 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr5_4:65241069-65241088 | None:intergenic | 40.0% | |
| GTAGGTCAATTATACCGGAA+CGG | - | chr5_4:65241071-65241090 | Msa0864710:intron | 40.0% | |
| TCAATTATACCGGAACGGAA+GGG | - | chr5_4:65241076-65241095 | Msa0864710:intron | 40.0% | |
| ATGTTGTGTTCCCATTCAGA+GGG | + | chr5_4:65241254-65241273 | None:intergenic | 40.0% | |
| TATGGTTGGAAAATGCATGC+AGG | - | chr5_4:65241466-65241485 | Msa0864710:intron | 40.0% | |
| GCGCAGAACATATAGATTGA+GGG | - | chr5_4:65241556-65241575 | Msa0864710:intron | 40.0% | |
| GGCAGTTAGAATACATCTAC+TGG | - | chr5_4:65241585-65241604 | Msa0864710:intron | 40.0% | |
| ! | ATACATCTACTGGCATCGAA+CGG | - | chr5_4:65241595-65241614 | Msa0864710:intron | 40.0% |
| GATCTCCTGGATCATATTGT+GGG | + | chr5_4:65241658-65241677 | None:intergenic | 40.0% | |
| TGATCTCCTGGATCATATTG+TGG | + | chr5_4:65241659-65241678 | None:intergenic | 40.0% | |
| AAATGTGCTAACATGTGCAC+CGG | + | chr5_4:65241777-65241796 | None:intergenic | 40.0% | |
| ! | GTGCACATGTTAGCACATTT+TGG | - | chr5_4:65241777-65241796 | Msa0864710:intron | 40.0% |
| TCCAACCATGGTCTTCTATT+CGG | - | chr5_4:65241800-65241819 | Msa0864710:intron | 40.0% | |
| TCCGTTTCGGGAATTGTAAT+TGG | - | chr5_4:65241836-65241855 | Msa0864710:intron | 40.0% | |
| TTCATTAACCGATCCGGAAA+CGG | - | chr5_4:65242102-65242121 | Msa0864710:intron | 40.0% | |
| CATATTCTCTTTCGGTGACT+CGG | + | chr5_4:65242177-65242196 | None:intergenic | 40.0% | |
| AGCTTGCACAAGTACAAGAT+TGG | - | chr5_4:65242201-65242220 | Msa0864710:intron | 40.0% | |
| CATCACGTAATAGAACCTCT+GGG | + | chr5_4:65242246-65242265 | None:intergenic | 40.0% | |
| ACATCACGTAATAGAACCTC+TGG | + | chr5_4:65242247-65242266 | None:intergenic | 40.0% | |
| ATCATTGGATGTTAGCCATG+AGG | - | chr5_4:65242294-65242313 | Msa0864710:intron | 40.0% | |
| ! | TAGCCATGAGGTTTTTGTTG+TGG | - | chr5_4:65242306-65242325 | Msa0864710:intron | 40.0% |
| ! | TTTGTTGTGGTGGAAAGAAG+TGG | - | chr5_4:65242319-65242338 | Msa0864710:intron | 40.0% |
| GCGTGAGTAGGTTTAGATTA+AGG | - | chr5_4:65242377-65242396 | Msa0864710:CDS | 40.0% | |
| GGTTTAGATTAAGGGCTTCA+TGG | - | chr5_4:65242386-65242405 | Msa0864710:CDS | 40.0% | |
| TTAAGGGCTTCATGGTTAAG+AGG | - | chr5_4:65242394-65242413 | Msa0864710:CDS | 40.0% | |
| ! | ATAACATATTCTGGTGGGTC+TGG | - | chr5_4:65242448-65242467 | Msa0864710:CDS | 40.0% |
| !! | GTCTGGTTTGTTGAGAGTAT+GGG | - | chr5_4:65242465-65242484 | Msa0864710:CDS | 40.0% |
| CTTCTCCATCATCTCTAACT+GGG | + | chr5_4:65242528-65242547 | None:intergenic | 40.0% | |
| ACAAGTACATGGCAATAGCA+TGG | - | chr5_4:65242549-65242568 | Msa0864710:CDS | 40.0% | |
| AATGTTGCTGCTGACATTCC+TGG | - | chr5_4:65237658-65237677 | Msa0864710:CDS | 45.0% | |
| !! | CAGGTTGATGAGAAGTGCTA+GGG | + | chr5_4:65237684-65237703 | None:intergenic | 45.0% |
| !! | TCAGGTTGATGAGAAGTGCT+AGG | + | chr5_4:65237685-65237704 | None:intergenic | 45.0% |
| GAAGAAGATGAAGGAGGTTC+AGG | + | chr5_4:65237703-65237722 | None:intergenic | 45.0% | |
| GTAGCCAATGCTTCAACAAC+AGG | + | chr5_4:65237763-65237782 | None:intergenic | 45.0% | |
| GTATCTGCGTATATCTCTGC+AGG | + | chr5_4:65238106-65238125 | None:intergenic | 45.0% | |
| TGCCCTAACATATGCACAGT+TGG | - | chr5_4:65238940-65238959 | Msa0864710:intron | 45.0% | |
| GCCCTAACATATGCACAGTT+GGG | - | chr5_4:65238941-65238960 | Msa0864710:intron | 45.0% | |
| !! | TATGCACAGTTGGGTTGGAT+CGG | - | chr5_4:65238950-65238969 | Msa0864710:intron | 45.0% |
| CCATCAACCCCATCTTCTAA+AGG | + | chr5_4:65240484-65240503 | None:intergenic | 45.0% | |
| ! | CCTTTAGAAGATGGGGTTGA+TGG | - | chr5_4:65240481-65240500 | Msa0864710:intron | 45.0% |
| !! | TGGGGTTGATGGTTTGTTAG+TGG | - | chr5_4:65240492-65240511 | Msa0864710:intron | 45.0% |
| !! | TGTCTTTAGGCTTGTTGGAG+GGG | - | chr5_4:65240545-65240564 | Msa0864710:intron | 45.0% |
| ATGGGTCAGTTATTCCAGGA+CGG | + | chr5_4:65240879-65240898 | None:intergenic | 45.0% | |
| GTCAATTATACCGGAACGGA+AGG | - | chr5_4:65241075-65241094 | Msa0864710:intron | 45.0% | |
| CAATTATACCGGAACGGAAG+GGG | - | chr5_4:65241077-65241096 | Msa0864710:intron | 45.0% | |
| AAGGAGGTAGTTGGATGAGA+TGG | + | chr5_4:65241131-65241150 | None:intergenic | 45.0% | |
| GATGTTGTGTTCCCATTCAG+AGG | + | chr5_4:65241255-65241274 | None:intergenic | 45.0% | |
| ! | GCATGCAGGTTTGTTCAACA+TGG | - | chr5_4:65241480-65241499 | Msa0864710:intron | 45.0% |
| !! | ATGGAGAGAAGTGTCACGTT+CGG | - | chr5_4:65241499-65241518 | Msa0864710:intron | 45.0% |
| GGCGCAGAACATATAGATTG+AGG | - | chr5_4:65241555-65241574 | Msa0864710:intron | 45.0% | |
| CATATAGATTGAGGGACACG+TGG | - | chr5_4:65241564-65241583 | Msa0864710:intron | 45.0% | |
| !! | AGCACATTTTGGTCCAACCA+TGG | - | chr5_4:65241788-65241807 | Msa0864710:intron | 45.0% |
| !! | CCGAAACGGATTGTGAAAAC+GGG | + | chr5_4:65241826-65241845 | None:intergenic | 45.0% |
| ! | CCCGTTTTCACAATCCGTTT+CGG | - | chr5_4:65241823-65241842 | Msa0864710:intron | 45.0% |
| !! | CCCGAAACGGATTGTGAAAA+CGG | + | chr5_4:65241827-65241846 | None:intergenic | 45.0% |
| ! | CCGTTTTCACAATCCGTTTC+GGG | - | chr5_4:65241824-65241843 | Msa0864710:intron | 45.0% |
| ATCTCCATCTAATCTCGCGA+AGG | + | chr5_4:65241876-65241895 | None:intergenic | 45.0% | |
| !! | TGGTGGGTTGGTTTATATGC+TGG | - | chr5_4:65242016-65242035 | Msa0864710:intron | 45.0% |
| TGGTTTATATGCTGGCCATG+CGG | - | chr5_4:65242024-65242043 | Msa0864710:intron | 45.0% | |
| ACCGAATTAGTTGAACCGGT+CGG | - | chr5_4:65242145-65242164 | Msa0864710:intron | 45.0% | |
| ! | ACCGACCGGTTCAACTAATT+CGG | + | chr5_4:65242149-65242168 | None:intergenic | 45.0% |
| CGTGATGTAGTGTCCATAAC+AGG | - | chr5_4:65242259-65242278 | Msa0864710:intron | 45.0% | |
| CCACCACAACAAAAACCTCA+TGG | + | chr5_4:65242312-65242331 | None:intergenic | 45.0% | |
| !! | CCATGAGGTTTTTGTTGTGG+TGG | - | chr5_4:65242309-65242328 | Msa0864710:intron | 45.0% |
| ! | GAAGTGGTGTTGGAACTGTT+CGG | - | chr5_4:65242335-65242354 | Msa0864710:intron | 45.0% |
| ATAATTTCGAGCGCGTGAGT+AGG | - | chr5_4:65242365-65242384 | Msa0864710:intron | 45.0% | |
| !! | GGTCTGGTTTGTTGAGAGTA+TGG | - | chr5_4:65242464-65242483 | Msa0864710:CDS | 45.0% |
| ATGGGACATACATGAACCTG+CGG | - | chr5_4:65242483-65242502 | Msa0864710:CDS | 45.0% | |
| CCTTCTCCATCATCTCTAAC+TGG | + | chr5_4:65242529-65242548 | None:intergenic | 45.0% | |
| !! | CCAGTTAGAGATGATGGAGA+AGG | - | chr5_4:65242526-65242545 | Msa0864710:CDS | 45.0% |
| GATGGAGAAGGACAAGTACA+TGG | - | chr5_4:65242538-65242557 | Msa0864710:CDS | 45.0% | |
| GGTTGCTAATCAAACTCACG+TGG | - | chr5_4:65242570-65242589 | Msa0864710:CDS | 45.0% | |
| !!! | TATAAAAATAATATTTCTTT+TGG | - | chr5_4:65238167-65238186 | Msa0864710:CDS | 5.0% |
| !!! | AATAATTTTTTTTTTAAGAA+AGG | - | chr5_4:65239722-65239741 | Msa0864710:intron | 5.0% |
| CGAGAGGAAGAAGATGAAGG+AGG | + | chr5_4:65237709-65237728 | None:intergenic | 50.0% | |
| TGGCGAGAGGAAGAAGATGA+AGG | + | chr5_4:65237712-65237731 | None:intergenic | 50.0% | |
| ATTCATAGCACGTTGGCGAG+AGG | + | chr5_4:65237725-65237744 | None:intergenic | 50.0% | |
| !! | ATGCACAGTTGGGTTGGATC+GGG | - | chr5_4:65238951-65238970 | Msa0864710:intron | 50.0% |
| ATTGTATACTCCCTCCGTCC+TGG | - | chr5_4:65240862-65240881 | Msa0864710:intron | 50.0% | |
| GTCAGTTATTCCAGGACGGA+GGG | + | chr5_4:65240875-65240894 | None:intergenic | 50.0% | |
| CATATACTCCCCTTCCGTTC+CGG | + | chr5_4:65241088-65241107 | None:intergenic | 50.0% | |
| AATCGCACCTTCCCTCTGAA+TGG | - | chr5_4:65241240-65241259 | Msa0864710:intron | 50.0% | |
| ATCGCACCTTCCCTCTGAAT+GGG | - | chr5_4:65241241-65241260 | Msa0864710:intron | 50.0% | |
| TGTGTTCCCATTCAGAGGGA+AGG | + | chr5_4:65241250-65241269 | None:intergenic | 50.0% | |
| TGTCACGTTCGGATCTACTG+TGG | - | chr5_4:65241510-65241529 | Msa0864710:intron | 50.0% | |
| GACCACTAAAGCATGTCTCC+CGG | + | chr5_4:65241636-65241655 | None:intergenic | 50.0% | |
| GTGGTCCCACAATATGATCC+AGG | - | chr5_4:65241650-65241669 | Msa0864710:intron | 50.0% | |
| !!! | AGGTTTTGGTGGTGATCTCC+TGG | + | chr5_4:65241671-65241690 | None:intergenic | 50.0% |
| GCCGAATAGAAGACCATGGT+TGG | + | chr5_4:65241804-65241823 | None:intergenic | 50.0% | |
| ATCTAATCTCGCGAAGGCGA+GGG | + | chr5_4:65241870-65241889 | None:intergenic | 50.0% | |
| !! | AATTTGCCGGCTCTAGTCGT+TGG | - | chr5_4:65241996-65242015 | Msa0864710:intron | 50.0% |
| GGTTTATATGCTGGCCATGC+GGG | - | chr5_4:65242025-65242044 | Msa0864710:intron | 50.0% | |
| ! | GGGCGGGGCTTTTCAAATAT+GGG | - | chr5_4:65242045-65242064 | Msa0864710:intron | 50.0% |
| TGGCGGTTCATTAACCGATC+CGG | - | chr5_4:65242096-65242115 | Msa0864710:intron | 50.0% | |
| TCCTTGAACCGTTTCCGGAT+CGG | + | chr5_4:65242113-65242132 | None:intergenic | 50.0% | |
| ATCCGGAAACGGTTCAAGGA+TGG | - | chr5_4:65242113-65242132 | Msa0864710:intron | 50.0% | |
| TGCCATCCTTGAACCGTTTC+CGG | + | chr5_4:65242118-65242137 | None:intergenic | 50.0% | |
| ! | GTGGTGGAAAGAAGTGGTGT+TGG | - | chr5_4:65242325-65242344 | Msa0864710:intron | 50.0% |
| ACGCTCCCAGTTAGAGATGA+TGG | - | chr5_4:65242520-65242539 | Msa0864710:CDS | 50.0% | |
| !! | TGATGAGAAGTGCTAGGGCC+AGG | + | chr5_4:65237679-65237698 | None:intergenic | 55.0% |
| ! | TGGGTTGGATCGGGTAGAAG+TGG | - | chr5_4:65238960-65238979 | Msa0864710:intron | 55.0% |
| GGTCAGTTATTCCAGGACGG+AGG | + | chr5_4:65240876-65240895 | None:intergenic | 55.0% | |
| GTTCGGATCTACTGTGGCAG+AGG | - | chr5_4:65241516-65241535 | Msa0864710:intron | 55.0% | |
| ACGGCCAGGAACTTTACCAC+CGG | - | chr5_4:65241614-65241633 | Msa0864710:intron | 55.0% | |
| TCTCCCGGTGGTAAAGTTCC+TGG | + | chr5_4:65241621-65241640 | None:intergenic | 55.0% | |
| CACTAAAGCATGTCTCCCGG+TGG | + | chr5_4:65241633-65241652 | None:intergenic | 55.0% | |
| CACCGGGAGACATGCTTTAG+TGG | - | chr5_4:65241631-65241650 | Msa0864710:intron | 55.0% | |
| !! | AGCGGCAGATGAGGTTTTGG+TGG | + | chr5_4:65241682-65241701 | None:intergenic | 55.0% |
| CGGTGTGGAGATCGAAGAGT+CGG | + | chr5_4:65241757-65241776 | None:intergenic | 55.0% | |
| CGACTCTTCGATCTCCACAC+CGG | - | chr5_4:65241755-65241774 | Msa0864710:intron | 55.0% | |
| ! | TGCTAACATGTGCACCGGTG+TGG | + | chr5_4:65241772-65241791 | None:intergenic | 55.0% |
| ACGGGCCGAATAGAAGACCA+TGG | + | chr5_4:65241808-65241827 | None:intergenic | 55.0% | |
| CATCTAATCTCGCGAAGGCG+AGG | + | chr5_4:65241871-65241890 | None:intergenic | 55.0% | |
| CTCGCCTTCGCGAGATTAGA+TGG | - | chr5_4:65241869-65241888 | Msa0864710:intron | 55.0% | |
| AATGGGCCTGGACCAATACC+CGG | - | chr5_4:65241914-65241933 | Msa0864710:intron | 55.0% | |
| ATTGCCCGTCGTGCAGGAAT+GGG | + | chr5_4:65241941-65241960 | None:intergenic | 55.0% | |
| AATTGCCCGTCGTGCAGGAA+TGG | + | chr5_4:65241942-65241961 | None:intergenic | 55.0% | |
| CCATTAATTGCCCGTCGTGC+AGG | + | chr5_4:65241947-65241966 | None:intergenic | 55.0% | |
| CCTGCACGACGGGCAATTAA+TGG | - | chr5_4:65241944-65241963 | Msa0864710:intron | 55.0% | |
| AACCCACCAACGACTAGAGC+CGG | + | chr5_4:65242005-65242024 | None:intergenic | 55.0% | |
| TTATATGCTGGCCATGCGGG+CGG | - | chr5_4:65242028-65242047 | Msa0864710:intron | 55.0% | |
| ! | CGGGCGGGGCTTTTCAAATA+TGG | - | chr5_4:65242044-65242063 | Msa0864710:intron | 55.0% |
| ACCGATCCGGAAACGGTTCA+AGG | - | chr5_4:65242109-65242128 | Msa0864710:intron | 55.0% | |
| AGAGGCTCACGAGACGCATC+TGG | - | chr5_4:65241534-65241553 | Msa0864710:intron | 60.0% | |
| ! | TCTACTGGCATCGAACGGCC+AGG | - | chr5_4:65241600-65241619 | Msa0864710:intron | 60.0% |
| CGGCCAGGAACTTTACCACC+GGG | - | chr5_4:65241615-65241634 | Msa0864710:intron | 60.0% | |
| ! | GGCAGCGGCAGATGAGGTTT+TGG | + | chr5_4:65241685-65241704 | None:intergenic | 60.0% |
| TGTCGGAGAGAGTGAGGCAG+CGG | + | chr5_4:65241700-65241719 | None:intergenic | 60.0% | |
| ATGGGCCTGGACCAATACCC+GGG | - | chr5_4:65241915-65241934 | Msa0864710:intron | 60.0% | |
| !! | TTGCCGGCTCTAGTCGTTGG+TGG | - | chr5_4:65241999-65242018 | Msa0864710:intron | 60.0% |
| !! | TGCCGGCTCTAGTCGTTGGT+GGG | - | chr5_4:65242000-65242019 | Msa0864710:intron | 60.0% |
| ! | GGCTCTAGTCGTTGGTGGGT+TGG | - | chr5_4:65242004-65242023 | Msa0864710:intron | 60.0% |
| TATATGCTGGCCATGCGGGC+GGG | - | chr5_4:65242029-65242048 | Msa0864710:intron | 60.0% | |
| TTTGAAAAGCCCCGCCCGCA+TGG | + | chr5_4:65242042-65242061 | None:intergenic | 60.0% | |
| GTGATACACAATCGCGCCGC+AGG | + | chr5_4:65242502-65242521 | None:intergenic | 60.0% | |
| GAGTGAGGCAGCGGCAGATG+AGG | + | chr5_4:65241691-65241710 | None:intergenic | 65.0% | |
| !! | GGTGGGTGTCGGAGAGAGTG+AGG | + | chr5_4:65241706-65241725 | None:intergenic | 65.0% |
| !! | ATGGGCCCGGGTATTGGTCC+AGG | + | chr5_4:65241923-65241942 | None:intergenic | 65.0% |
| GCAGGAATGGGCCCGGGTAT+TGG | + | chr5_4:65241929-65241948 | None:intergenic | 65.0% | |
| ATATGCTGGCCATGCGGGCG+GGG | - | chr5_4:65242030-65242049 | Msa0864710:intron | 65.0% | |
| ! | GTGACTCGGACTCGACCGAC+CGG | + | chr5_4:65242163-65242182 | None:intergenic | 65.0% |
| TCCGACACCCACCTCGCCTG+CGG | - | chr5_4:65241713-65241732 | Msa0864710:intron | 70.0% | |
| GACGAAGCCGCAGGCGAGGT+GGG | + | chr5_4:65241723-65241742 | None:intergenic | 70.0% | |
| CTCGCCTGCGGCTTCGTCGA+CGG | - | chr5_4:65241725-65241744 | Msa0864710:intron | 70.0% | |
| ACTGCCGTCGACGAAGCCGC+AGG | + | chr5_4:65241732-65241751 | None:intergenic | 70.0% | |
| CGTCGTGCAGGAATGGGCCC+GGG | + | chr5_4:65241935-65241954 | None:intergenic | 70.0% | |
| CCGTCGTGCAGGAATGGGCC+CGG | + | chr5_4:65241936-65241955 | None:intergenic | 70.0% | |
| CCGGGCCCATTCCTGCACGA+CGG | - | chr5_4:65241933-65241952 | Msa0864710:intron | 70.0% | |
| CGGGCCCATTCCTGCACGAC+GGG | - | chr5_4:65241934-65241953 | Msa0864710:intron | 70.0% | |
| GCCGCAGGCGAGGTGGGTGT+CGG | + | chr5_4:65241717-65241736 | None:intergenic | 75.0% | |
| CGACGAAGCCGCAGGCGAGG+TGG | + | chr5_4:65241724-65241743 | None:intergenic | 75.0% | |
| CGTCGACGAAGCCGCAGGCG+AGG | + | chr5_4:65241727-65241746 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65237580 | 65242645 | 65237580 | ID=Msa0864710;Name=Msa0864710 |
| chr5_4 | mRNA | 65237580 | 65242645 | 65237580 | ID=Msa0864710-mRNA-1;Parent=Msa0864710;Name=Msa0864710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|477 |
| chr5_4 | exon | 65242370 | 65242645 | 65242370 | ID=Msa0864710-mRNA-1:exon:20578;Parent=Msa0864710-mRNA-1 |
| chr5_4 | exon | 65237580 | 65238737 | 65237580 | ID=Msa0864710-mRNA-1:exon:20577;Parent=Msa0864710-mRNA-1 |
| chr5_4 | CDS | 65242370 | 65242645 | 65242370 | ID=Msa0864710-mRNA-1:cds;Parent=Msa0864710-mRNA-1 |
| chr5_4 | CDS | 65237580 | 65238737 | 65237580 | ID=Msa0864710-mRNA-1:cds;Parent=Msa0864710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
