Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384600 | XP_003617930.1 | 97.694 | 477 | 10 | 1 | 2 | 477 | 4 | 480 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384600 | sp|Q9FKH1|SAP_ARATH | 46.364 | 440 | 213 | 8 | 42 | 474 | 20 | 443 | 1.14e-113 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384600 | G7KEL4 | 97.694 | 477 | 10 | 1 | 2 | 477 | 4 | 480 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1384600 | TF | SAP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0864710 | Msa1384600 | 0.992133 | 1.695824e-191 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384600 | MtrunA17_Chr5g0447381 | 98.450 | 387 | 6 | 0 | 91 | 477 | 6 | 392 | 0.0 | 779 |
| Msa1384600 | MtrunA17_Chr5g0447371 | 91.139 | 79 | 6 | 1 | 17 | 94 | 19 | 97 | 2.88e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384600 | AT5G35770.1 | 46.364 | 440 | 213 | 8 | 42 | 474 | 20 | 443 | 1.15e-114 | 345 |
Find 143 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTCTTCTATACATTTAT+TGG | 0.108359 | tig0020668:-15816 | Msa1384600:CDS |
| TTATTAGGGTGCATGAATTT+AGG | 0.164199 | tig0020668:-16004 | Msa1384600:CDS |
| GTCTACATTGCTATTATTAA+TGG | 0.164360 | tig0020668:-16526 | Msa1384600:CDS |
| TCATGGTTAAGAGGTTTATT+AGG | 0.167477 | tig0020668:-16019 | Msa1384600:CDS |
| TGCCATCCTTGAACCGTTTC+CGG | 0.223972 | tig0020668:+16307 | None:intergenic |
| GCGTGAGTAGGTTTAGATTA+AGG | 0.227131 | tig0020668:-16045 | Msa1384600:CDS |
| GGTCTGGTTTGTTGAGAGTA+TGG | 0.250834 | tig0020668:-15958 | Msa1384600:CDS |
| CCTTCTCCATCATCTCTAAC+TGG | 0.275457 | tig0020668:+15896 | None:intergenic |
| GGGTATGTTATAACATATTC+TGG | 0.276633 | tig0020668:-15983 | Msa1384600:CDS |
| TCCGTTTCGGGAATTGTAAT+TGG | 0.284357 | tig0020668:-16586 | Msa1384600:CDS |
| TATTAGGGTGCATGAATTTA+GGG | 0.289123 | tig0020668:-16003 | Msa1384600:CDS |
| GTGCACATGTTAGCACATTT+TGG | 0.290721 | tig0020668:-16645 | Msa1384600:CDS |
| AATGTTGCTGCTGACATTCC+TGG | 0.294438 | tig0020668:-20765 | Msa1384600:CDS |
| GAAGAAGATGAAGGAGGTTC+AGG | 0.311212 | tig0020668:+20723 | None:intergenic |
| CGTGAGTAGGTTTAGATTAA+GGG | 0.323549 | tig0020668:-16044 | Msa1384600:CDS |
| CATGGTTAAGAGGTTTATTA+GGG | 0.328702 | tig0020668:-16018 | Msa1384600:CDS |
| CTCGCCTTCGCGAGATTAGA+TGG | 0.334905 | tig0020668:-16553 | Msa1384600:CDS |
| GCAGGAATGGGCCCGGGTAT+TGG | 0.339605 | tig0020668:+16496 | None:intergenic |
| TCTACATTGCTATTATTAAT+GGG | 0.340728 | tig0020668:-16525 | Msa1384600:CDS |
| TCCAACCATGGTCTTCTATT+CGG | 0.353047 | tig0020668:-16622 | Msa1384600:CDS |
| ATAACATATTCTGGTGGGTC+TGG | 0.372539 | tig0020668:-15974 | Msa1384600:CDS |
| GGCAGCGGCAGATGAGGTTT+TGG | 0.378783 | tig0020668:+16740 | None:intergenic |
| TATATGCTGGCCATGCGGGC+GGG | 0.383931 | tig0020668:-16393 | Msa1384600:CDS |
| AGCTACTACATATTCTCTTT+CGG | 0.384245 | tig0020668:+16240 | None:intergenic |
| ACGGAACAGCGCGTGTTTGT+TGG | 0.386206 | tig0020668:-16346 | Msa1384600:CDS |
| AGGATTCATTGTAGGATCAT+TGG | 0.389444 | tig0020668:-16143 | Msa1384600:CDS |
| CGTGATGTAGTGTCCATAAC+AGG | 0.395954 | tig0020668:-16163 | Msa1384600:CDS |
| GGTTTAGATTAAGGGCTTCA+TGG | 0.398867 | tig0020668:-16036 | Msa1384600:CDS |
| TTCATTAACCGATCCGGAAA+CGG | 0.410471 | tig0020668:-16320 | Msa1384600:CDS |
| CACCGGGAGACATGCTTTAG+TGG | 0.414725 | tig0020668:-16791 | Msa1384600:CDS |
| CCCGAAACGGATTGTGAAAA+CGG | 0.417479 | tig0020668:+16598 | None:intergenic |
| ACATCACGTAATAGAACCTC+TGG | 0.422231 | tig0020668:+16178 | None:intergenic |
| AGCTTGCACAAGTACAAGAT+TGG | 0.422430 | tig0020668:-16221 | Msa1384600:CDS |
| ATATGCTGGCCATGCGGGCG+GGG | 0.423497 | tig0020668:-16392 | Msa1384600:CDS |
| ACCGACCGGTTCAACTAATT+CGG | 0.424968 | tig0020668:+16276 | None:intergenic |
| AGAGGCTCACGAGACGCATC+TGG | 0.428365 | tig0020668:-16888 | Msa1384600:CDS |
| GTAGCCAATGCTTCAACAAC+AGG | 0.432980 | tig0020668:+20663 | None:intergenic |
| TCCAATTACAATTCCCGAAA+CGG | 0.436742 | tig0020668:+16585 | None:intergenic |
| GGCTCTAGTCGTTGGTGGGT+TGG | 0.439072 | tig0020668:-16418 | Msa1384600:CDS |
| TCCTACAATGAATCCTGTTA+TGG | 0.441153 | tig0020668:+16150 | None:intergenic |
| TCTCCCGGTGGTAAAGTTCC+TGG | 0.441224 | tig0020668:+16804 | None:intergenic |
| TCCTTGAACCGTTTCCGGAT+CGG | 0.441558 | tig0020668:+16312 | None:intergenic |
| CCATTAATTGCCCGTCGTGC+AGG | 0.443293 | tig0020668:+16478 | None:intergenic |
| TTAAGGGCTTCATGGTTAAG+AGG | 0.447013 | tig0020668:-16028 | Msa1384600:CDS |
| AATTGCCCGTCGTGCAGGAA+TGG | 0.458917 | tig0020668:+16483 | None:intergenic |
| ATTGCCCGTCGTGCAGGAAT+GGG | 0.459648 | tig0020668:+16484 | None:intergenic |
| ACCGATCCGGAAACGGTTCA+AGG | 0.460400 | tig0020668:-16313 | Msa1384600:CDS |
| ATGGGCCCGGGTATTGGTCC+AGG | 0.465999 | tig0020668:+16502 | None:intergenic |
| GGTTTATATGCTGGCCATGC+GGG | 0.468935 | tig0020668:-16397 | Msa1384600:CDS |
| TGGTGGGTTGGTTTATATGC+TGG | 0.470180 | tig0020668:-16406 | Msa1384600:CDS |
| TGAACCTGTTGTTGAAGCAT+TGG | 0.473412 | tig0020668:-20667 | Msa1384600:CDS |
| GTTAACCGAATTAGTTGAAC+CGG | 0.476077 | tig0020668:-16281 | Msa1384600:CDS |
| ATTGATGCTTCTCATTATCA+TGG | 0.480019 | tig0020668:-20630 | Msa1384600:CDS |
| TTGCCGGCTCTAGTCGTTGG+TGG | 0.480637 | tig0020668:-16423 | Msa1384600:CDS |
| CATATTCTCTTTCGGTGACT+CGG | 0.481267 | tig0020668:+16248 | None:intergenic |
| GAGGAAGAAGCAACATCATA+AGG | 0.481607 | tig0020668:+20789 | None:intergenic |
| TGCCGGCTCTAGTCGTTGGT+GGG | 0.484033 | tig0020668:-16422 | Msa1384600:CDS |
| ATGATAATGAGAAGCATCAA+TGG | 0.484575 | tig0020668:+20632 | None:intergenic |
| ATTGCTATTATTAATGGGCC+TGG | 0.486088 | tig0020668:-16520 | Msa1384600:CDS |
| CGACGAAGCCGCAGGCGAGG+TGG | 0.487527 | tig0020668:+16701 | None:intergenic |
| GGAGTATTAGTAGAATTTGC+CGG | 0.489467 | tig0020668:-16439 | Msa1384600:CDS |
| ACGCTCCCAGTTAGAGATGA+TGG | 0.491914 | tig0020668:-15902 | Msa1384600:CDS |
| ATCTAATCTCGCGAAGGCGA+GGG | 0.494316 | tig0020668:+16555 | None:intergenic |
| TCAAATATGGGACGCGCACA+CGG | 0.496233 | tig0020668:-16365 | Msa1384600:CDS |
| CCGAAACGGATTGTGAAAAC+GGG | 0.497568 | tig0020668:+16599 | None:intergenic |
| TGGCGGTTCATTAACCGATC+CGG | 0.497586 | tig0020668:-16326 | Msa1384600:CDS |
| CATCTAATCTCGCGAAGGCG+AGG | 0.498179 | tig0020668:+16554 | None:intergenic |
| TGATCTCCTGGATCATATTG+TGG | 0.499584 | tig0020668:+16766 | None:intergenic |
| AACGTGCTATGAATGAAGTA+TGG | 0.501621 | tig0020668:-20692 | Msa1384600:CDS |
| TTATATGCTGGCCATGCGGG+CGG | 0.503776 | tig0020668:-16394 | Msa1384600:CDS |
| GAACAGCGCGTGTTTGTTGG+CGG | 0.505393 | tig0020668:-16343 | Msa1384600:CDS |
| TGTCGGAGAGAGTGAGGCAG+CGG | 0.506671 | tig0020668:+16725 | None:intergenic |
| AATGGTGATGTTGTCAATAA+CGG | 0.506851 | tig0020668:-16460 | Msa1384600:CDS |
| TCCATAACAGGATTCATTGT+AGG | 0.509536 | tig0020668:-16151 | Msa1384600:CDS |
| GGAGTAATTGAAGGTGAAGA+TGG | 0.509585 | tig0020668:+20810 | None:intergenic |
| CTTCTCCATCATCTCTAACT+GGG | 0.510502 | tig0020668:+15897 | None:intergenic |
| AACCCACCAACGACTAGAGC+CGG | 0.516179 | tig0020668:+16420 | None:intergenic |
| CTCGCCTGCGGCTTCGTCGA+CGG | 0.523192 | tig0020668:-16697 | Msa1384600:CDS |
| GTCTGGTTTGTTGAGAGTAT+GGG | 0.524284 | tig0020668:-15957 | Msa1384600:CDS |
| TGATGAGAAGTGCTAGGGCC+AGG | 0.527006 | tig0020668:+20747 | None:intergenic |
| GAGTGAGGCAGCGGCAGATG+AGG | 0.527259 | tig0020668:+16734 | None:intergenic |
| GTTCGGATCTACTGTGGCAG+AGG | 0.528047 | tig0020668:-16906 | Msa1384600:CDS |
| GACGAAGCCGCAGGCGAGGT+GGG | 0.529764 | tig0020668:+16702 | None:intergenic |
| GGCGCAGAACATATAGATTG+AGG | 0.532902 | tig0020668:-16867 | Msa1384600:CDS |
| GGCAGTTAGAATACATCTAC+TGG | 0.534095 | tig0020668:-16837 | Msa1384600:CDS |
| GTGGTCCCACAATATGATCC+AGG | 0.534362 | tig0020668:-16772 | Msa1384600:CDS |
| GCCGCAGGCGAGGTGGGTGT+CGG | 0.536831 | tig0020668:+16708 | None:intergenic |
| ATGGAGAGAAGTGTCACGTT+CGG | 0.540623 | tig0020668:-16923 | Msa1384600:CDS |
| TGGTTGTGATGAAGAAGAAG+AGG | 0.543717 | tig0020668:+20830 | None:intergenic |
| GCGCAGAACATATAGATTGA+GGG | 0.543876 | tig0020668:-16866 | Msa1384600:CDS |
| GATCTCCTGGATCATATTGT+GGG | 0.544786 | tig0020668:+16767 | None:intergenic |
| CGTCGTGCAGGAATGGGCCC+GGG | 0.546050 | tig0020668:+16490 | None:intergenic |
| AATTTGCCGGCTCTAGTCGT+TGG | 0.546832 | tig0020668:-16426 | Msa1384600:CDS |
| GTGGTGGAAAGAAGTGGTGT+TGG | 0.551066 | tig0020668:-16097 | Msa1384600:CDS |
| ATGTTATAACATATTCTGGT+GGG | 0.553968 | tig0020668:-15979 | Msa1384600:CDS |
| TCAGGTTGATGAGAAGTGCT+AGG | 0.553999 | tig0020668:+20741 | None:intergenic |
| AATGGGCCTGGACCAATACC+CGG | 0.556865 | tig0020668:-16508 | Msa1384600:CDS |
| GCCGAATAGAAGACCATGGT+TGG | 0.558339 | tig0020668:+16621 | None:intergenic |
| ACATCATAAGGAGTAATTGA+AGG | 0.563591 | tig0020668:+20801 | None:intergenic |
| TCTACTGGCATCGAACGGCC+AGG | 0.565427 | tig0020668:-16822 | Msa1384600:CDS |
| TTTGTTGTGGTGGAAAGAAG+TGG | 0.565574 | tig0020668:-16103 | Msa1384600:CDS |
| TTTGAAAAGCCCCGCCCGCA+TGG | 0.566257 | tig0020668:+16383 | None:intergenic |
| TGGCGAGAGGAAGAAGATGA+AGG | 0.567730 | tig0020668:+20714 | None:intergenic |
| GAAGTGGTGTTGGAACTGTT+CGG | 0.568741 | tig0020668:-16087 | Msa1384600:CDS |
| GGTGGGTGTCGGAGAGAGTG+AGG | 0.568818 | tig0020668:+16719 | None:intergenic |
| CGTCGACGAAGCCGCAGGCG+AGG | 0.570217 | tig0020668:+16698 | None:intergenic |
| ATGGGCCTGGACCAATACCC+GGG | 0.577553 | tig0020668:-16507 | Msa1384600:CDS |
| GTGACTCGGACTCGACCGAC+CGG | 0.586956 | tig0020668:+16262 | None:intergenic |
| ATCCGGAAACGGTTCAAGGA+TGG | 0.588593 | tig0020668:-16309 | Msa1384600:CDS |
| GACCACTAAAGCATGTCTCC+CGG | 0.592351 | tig0020668:+16789 | None:intergenic |
| GCATGCAGGTTTGTTCAACA+TGG | 0.597878 | tig0020668:-16942 | Msa1384600:intron |
| AATGTCAGCAGCAACATTTG+AGG | 0.598135 | tig0020668:+20770 | None:intergenic |
| TGGTTTATATGCTGGCCATG+CGG | 0.599044 | tig0020668:-16398 | Msa1384600:CDS |
| ACTGCCGTCGACGAAGCCGC+AGG | 0.600288 | tig0020668:+16693 | None:intergenic |
| ACGGCCAGGAACTTTACCAC+CGG | 0.601863 | tig0020668:-16808 | Msa1384600:CDS |
| ATAATTTCGAGCGCGTGAGT+AGG | 0.604680 | tig0020668:-16057 | Msa1384600:CDS |
| CGGCCAGGAACTTTACCACC+GGG | 0.607000 | tig0020668:-16807 | Msa1384600:CDS |
| CAGGTTGATGAGAAGTGCTA+GGG | 0.609841 | tig0020668:+20742 | None:intergenic |
| CCAGTTAGAGATGATGGAGA+AGG | 0.611674 | tig0020668:-15896 | Msa1384600:CDS |
| GATGGAGAAGGACAAGTACA+TGG | 0.613846 | tig0020668:-15884 | Msa1384600:CDS |
| TCCGACACCCACCTCGCCTG+CGG | 0.615146 | tig0020668:-16709 | Msa1384600:CDS |
| ATCTCCATCTAATCTCGCGA+AGG | 0.620003 | tig0020668:+16549 | None:intergenic |
| TATGTTATAACATATTCTGG+TGG | 0.621514 | tig0020668:-15980 | Msa1384600:CDS |
| ATTCATAGCACGTTGGCGAG+AGG | 0.622029 | tig0020668:+20701 | None:intergenic |
| ATCATTGGATGTTAGCCATG+AGG | 0.625954 | tig0020668:-16128 | Msa1384600:CDS |
| TGCTAACATGTGCACCGGTG+TGG | 0.634853 | tig0020668:+16653 | None:intergenic |
| ACAAGTACATGGCAATAGCA+TGG | 0.638195 | tig0020668:-15873 | Msa1384600:CDS |
| CATATAGATTGAGGGACACG+TGG | 0.643287 | tig0020668:-16858 | Msa1384600:CDS |
| CGGTGTGGAGATCGAAGAGT+CGG | 0.650728 | tig0020668:+16668 | None:intergenic |
| CCGGGCCCATTCCTGCACGA+CGG | 0.655323 | tig0020668:-16489 | Msa1384600:CDS |
| AAATGTGCTAACATGTGCAC+CGG | 0.656474 | tig0020668:+16648 | None:intergenic |
| ATACATCTACTGGCATCGAA+CGG | 0.658565 | tig0020668:-16827 | Msa1384600:CDS |
| CATCACGTAATAGAACCTCT+GGG | 0.662087 | tig0020668:+16179 | None:intergenic |
| CGAGAGGAAGAAGATGAAGG+AGG | 0.662653 | tig0020668:+20717 | None:intergenic |
| CGACTCTTCGATCTCCACAC+CGG | 0.677791 | tig0020668:-16667 | Msa1384600:CDS |
| ACCGAATTAGTTGAACCGGT+CGG | 0.683053 | tig0020668:-16277 | Msa1384600:CDS |
| TGTCACGTTCGGATCTACTG+TGG | 0.685634 | tig0020668:-16912 | Msa1384600:CDS |
| TTTCAACTTAAGAAACCCAG+AGG | 0.687724 | tig0020668:-16194 | Msa1384600:CDS |
| ATGGGACATACATGAACCTG+CGG | 0.688958 | tig0020668:-15939 | Msa1384600:CDS |
| CACTAAAGCATGTCTCCCGG+TGG | 0.706707 | tig0020668:+16792 | None:intergenic |
| GGTTGCTAATCAAACTCACG+TGG | 0.706916 | tig0020668:-15852 | Msa1384600:CDS |
| ACGGGCCGAATAGAAGACCA+TGG | 0.711737 | tig0020668:+16617 | None:intergenic |
| ATACTTCATTCATAGCACGT+TGG | 0.720163 | tig0020668:+20694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTAATATAATCAAAT+AGG | - | tig0020668:16137-16156 | Msa1384600:CDS | 10.0% |
| !!! | TCTTATTATTTTTACATAAA+GGG | + | tig0020668:16347-16366 | None:intergenic | 10.0% |
| !!! | TTCTTATTATTTTTACATAA+AGG | + | tig0020668:16348-16367 | None:intergenic | 10.0% |
| !!! | TGAATTTTATTTTTTTTTGA+AGG | - | tig0020668:17384-17403 | Msa1384600:intron | 10.0% |
| !!! | AATAATACAAGAAATATTTT+AGG | - | tig0020668:17555-17574 | Msa1384600:intron | 10.0% |
| !!! | AGAGTATTATAATTATATAA+TGG | - | tig0020668:17973-17992 | Msa1384600:intron | 10.0% |
| !!! | AAACCTATTTTAAAATTAAA+TGG | + | tig0020668:18166-18185 | None:intergenic | 10.0% |
| !! | TATAATACCAAATGAAAAAA+AGG | + | tig0020668:16664-16683 | None:intergenic | 15.0% |
| !!! | TTAGTTTCTAAAAACATTTA+AGG | - | tig0020668:17350-17369 | Msa1384600:intron | 15.0% |
| !!! | TTCACTCAATTTTTTTTTTA+GGG | + | tig0020668:17679-17698 | None:intergenic | 15.0% |
| !!! | TTTCACTCAATTTTTTTTTT+AGG | + | tig0020668:17680-17699 | None:intergenic | 15.0% |
| !! | TTACAAAAAAAATGTGTATT+TGG | + | tig0020668:17883-17902 | None:intergenic | 15.0% |
| !! | AATTATATAATGGCATAAAA+TGG | - | tig0020668:17983-18002 | Msa1384600:intron | 15.0% |
| !! | ATCATACTATTTAATGTATT+GGG | + | tig0020668:18119-18138 | None:intergenic | 15.0% |
| !! | TATCATACTATTTAATGTAT+TGG | + | tig0020668:18120-18139 | None:intergenic | 15.0% |
| !!! | GATCCATTTAATTTTAAAAT+AGG | - | tig0020668:18160-18179 | Msa1384600:intron | 15.0% |
| !!! | ATTAATATTACTTGTTAGTA+AGG | + | tig0020668:18378-18397 | None:intergenic | 15.0% |
| !! | TTATACACAATATATTTACA+TGG | - | tig0020668:18588-18607 | Msa1384600:intron | 15.0% |
| !! | AATGAAATATTAGTAAAACA+TGG | + | tig0020668:18919-18938 | None:intergenic | 15.0% |
| !! | ATAAAATTTATGATATGATG+TGG | + | tig0020668:19039-19058 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | + | tig0020668:19117-19136 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | tig0020668:19187-19206 | None:intergenic | 15.0% |
| !!! | GTCAATTTTCTATTTAATTT+TGG | - | tig0020668:19505-19524 | Msa1384600:intron | 15.0% |
| !!! | TTTTTTTTTTTTGCATGATA+TGG | - | tig0020668:19649-19668 | Msa1384600:intron | 15.0% |
| !!! | TTTTTTTTTTTGCATGATAT+GGG | - | tig0020668:19650-19669 | Msa1384600:intron | 15.0% |
| !! | ACAAAATAATTCTTCATTGT+TGG | + | tig0020668:16188-16207 | None:intergenic | 20.0% |
| !! | TCAGAAAATAGACAAATTAT+TGG | - | tig0020668:16274-16293 | Msa1384600:CDS | 20.0% |
| !! | AAAATACTGTTCCTTAAAAA+CGG | - | tig0020668:16546-16565 | Msa1384600:CDS | 20.0% |
| !! | CATTTGGTATTATATGAAAA+AGG | - | tig0020668:16670-16689 | Msa1384600:CDS | 20.0% |
| !! | TATCTAATCTAATAAATCCA+TGG | - | tig0020668:16772-16791 | Msa1384600:CDS | 20.0% |
| !!! | GATGTTTTTAGATAGAAAAA+AGG | + | tig0020668:16802-16821 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTTAAATAACACA+AGG | - | tig0020668:16855-16874 | Msa1384600:CDS | 20.0% |
| !!! | CAATGAAAATGTACAATTTT+TGG | - | tig0020668:17006-17025 | Msa1384600:intron | 20.0% |
| !! | ATAATAATATGAAACCAAAC+CGG | + | tig0020668:17033-17052 | None:intergenic | 20.0% |
| !! | TTTCTACGAATATAATCTTA+GGG | + | tig0020668:17125-17144 | None:intergenic | 20.0% |
| !! | ATTTCTACGAATATAATCTT+AGG | + | tig0020668:17126-17145 | None:intergenic | 20.0% |
| !!! | GTTTGAATTGTTATTATTGT+TGG | - | tig0020668:17416-17435 | Msa1384600:intron | 20.0% |
| !!! | AAGAACAATACCTTTTTTAA+GGG | + | tig0020668:17475-17494 | None:intergenic | 20.0% |
| !!! | TAAGAACAATACCTTTTTTA+AGG | + | tig0020668:17476-17495 | None:intergenic | 20.0% |
| !!! | TTTTATTCCCAACTTTTTTT+TGG | - | tig0020668:17610-17629 | Msa1384600:intron | 20.0% |
| !!! | TAGAATTGATTCTAATTGAA+GGG | + | tig0020668:17793-17812 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAAGAAAGGAGA+CGG | - | tig0020668:17948-17967 | Msa1384600:intron | 20.0% |
| !!! | TTTTAAATTGTTTCTTCCTT+TGG | - | tig0020668:18619-18638 | Msa1384600:intron | 20.0% |
| !!! | TTTAAATTGTTTCTTCCTTT+GGG | - | tig0020668:18620-18639 | Msa1384600:intron | 20.0% |
| !! | AAATGAAAGTGAAATATATG+TGG | - | tig0020668:18860-18879 | Msa1384600:intron | 20.0% |
| !! | AATGAAAGTGAAATATATGT+GGG | - | tig0020668:18861-18880 | Msa1384600:intron | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | + | tig0020668:19118-19137 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | tig0020668:19153-19172 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | tig0020668:19154-19173 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | + | tig0020668:19251-19270 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | + | tig0020668:19252-19271 | None:intergenic | 20.0% |
| !!! | TCTACATTGCTATTATTAAT+GGG | - | tig0020668:20117-20136 | Msa1384600:intron | 20.0% |
| ! | AAATGTGACCTGAAAAATAA+TGG | + | tig0020668:16064-16083 | None:intergenic | 25.0% |
| ! | AATCAAATAGGTCATGTTTA+AGG | - | tig0020668:16149-16168 | Msa1384600:CDS | 25.0% |
| ! | ATTGAATGTACCAATGTATT+GGG | + | tig0020668:16465-16484 | None:intergenic | 25.0% |
| ! | AATTGAATGTACCAATGTAT+TGG | + | tig0020668:16466-16485 | None:intergenic | 25.0% |
| ! | GTACATTCAATTCAACTAAT+TGG | - | tig0020668:16474-16493 | Msa1384600:CDS | 25.0% |
| ! | TCAATTCAACTAATTGGATT+AGG | - | tig0020668:16480-16499 | Msa1384600:CDS | 25.0% |
| !! | TTTAAGGAACAGTATTTTCT+AGG | + | tig0020668:16544-16563 | None:intergenic | 25.0% |
| ! | AATACCAAATGAAAAAAAGG+AGG | + | tig0020668:16661-16680 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTTTACCTTTCT+TGG | - | tig0020668:16699-16718 | Msa1384600:CDS | 25.0% |
| ! | TTAAAAAGCTCAGTCAAAAT+AGG | + | tig0020668:16733-16752 | None:intergenic | 25.0% |
| !! | TTTTCTTAAATAACACAAGG+AGG | - | tig0020668:16858-16877 | Msa1384600:CDS | 25.0% |
| ! | TTTCTTAAATAACACAAGGA+GGG | - | tig0020668:16859-16878 | Msa1384600:CDS | 25.0% |
| !!! | AAAATGTACAATTTTTGGTC+CGG | - | tig0020668:17011-17030 | Msa1384600:intron | 25.0% |
| ! | ATTCTGAATTCAAATCCAAA+AGG | + | tig0020668:17214-17233 | None:intergenic | 25.0% |
| ! | TGAGTAAAATGACATTATTC+AGG | + | tig0020668:17272-17291 | None:intergenic | 25.0% |
| ! | ATCTTCTAATCCCTTAAAAA+AGG | - | tig0020668:17462-17481 | Msa1384600:intron | 25.0% |
| !! | GTAGAATTGATTCTAATTGA+AGG | + | tig0020668:17794-17813 | None:intergenic | 25.0% |
| !!! | TGTGTATTTGGTTCTAATTT+TGG | + | tig0020668:17871-17890 | None:intergenic | 25.0% |
| ! | TATAAAAGCCAAAAATCACA+TGG | - | tig0020668:18023-18042 | Msa1384600:intron | 25.0% |
| ! | ATATGCATATATATGTGCTT+GGG | + | tig0020668:18225-18244 | None:intergenic | 25.0% |
| ! | AATATGCATATATATGTGCT+TGG | + | tig0020668:18226-18245 | None:intergenic | 25.0% |
| ! | TTTAAAAAGTGAACTACTCT+TGG | - | tig0020668:18425-18444 | Msa1384600:intron | 25.0% |
| ! | AATATTTCAATGCATACAAG+AGG | + | tig0020668:18548-18567 | None:intergenic | 25.0% |
| ! | TTTCATTTCCAATAAAGGTA+TGG | + | tig0020668:18848-18867 | None:intergenic | 25.0% |
| ! | TTCACTTTCATTTCCAATAA+AGG | + | tig0020668:18853-18872 | None:intergenic | 25.0% |
| ! | ATGAAAGTGAAATATATGTG+GGG | - | tig0020668:18862-18881 | Msa1384600:intron | 25.0% |
| ! | ACTAGCATTAGATTAATATG+AGG | + | tig0020668:19004-19023 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | tig0020668:19228-19247 | None:intergenic | 25.0% |
| !! | AGAAAAGTGTATAAATGAAG+GGG | + | tig0020668:19250-19269 | None:intergenic | 25.0% |
| ! | GAAGATATTCTCAATCAAAA+AGG | + | tig0020668:19370-19389 | None:intergenic | 25.0% |
| ! | ATTCTTCCATAGATAAGATA+TGG | + | tig0020668:19395-19414 | None:intergenic | 25.0% |
| ! | AATAGAAAATTGACTGTTCA+AGG | + | tig0020668:19499-19518 | None:intergenic | 25.0% |
| ! | TAGAATATGCATATAGGTAT+AGG | + | tig0020668:19533-19552 | None:intergenic | 25.0% |
| ! | ACACTATAGAATATGCATAT+AGG | + | tig0020668:19539-19558 | None:intergenic | 25.0% |
| !! | GTCTACATTGCTATTATTAA+TGG | - | tig0020668:20116-20135 | Msa1384600:intron | 25.0% |
| ! | TATGTTATAACATATTCTGG+TGG | - | tig0020668:20662-20681 | Msa1384600:CDS | 25.0% |
| ! | ATGTTATAACATATTCTGGT+GGG | - | tig0020668:20663-20682 | Msa1384600:CDS | 25.0% |
| ! | TGACTCTTCTATACATTTAT+TGG | - | tig0020668:20826-20845 | Msa1384600:CDS | 25.0% |
| ACATCATAAGGAGTAATTGA+AGG | + | tig0020668:15844-15863 | None:intergenic | 30.0% | |
| !! | ATGATAATGAGAAGCATCAA+TGG | + | tig0020668:16013-16032 | None:intergenic | 30.0% |
| ATTGATGCTTCTCATTATCA+TGG | - | tig0020668:16012-16031 | Msa1384600:CDS | 30.0% | |
| ! | ATTTTCTGAACTGAAAAAGC+TGG | + | tig0020668:16263-16282 | None:intergenic | 30.0% |
| !!! | CTTAAAAGTAGCCGTTTTTA+AGG | + | tig0020668:16560-16579 | None:intergenic | 30.0% |
| !!! | CTTAAAAACGGCTACTTTTA+AGG | - | tig0020668:16558-16577 | Msa1384600:CDS | 30.0% |
| ! | CATTTACCCTTTTTGTGAAA+GGG | + | tig0020668:16612-16631 | None:intergenic | 30.0% |
| ! | ACATTTACCCTTTTTGTGAA+AGG | + | tig0020668:16613-16632 | None:intergenic | 30.0% |
| ! | TTTTCTTGTATGTTCTGTCT+TGG | - | tig0020668:16634-16653 | Msa1384600:CDS | 30.0% |
| !! | GCTTTTTACTTTGTTTCAGA+AGG | - | tig0020668:16831-16850 | Msa1384600:CDS | 30.0% |
| ! | TCAGAATAGTACTCACATTT+TGG | - | tig0020668:17227-17246 | Msa1384600:intron | 30.0% |
| ! | TGCTTAATTTTACCACGAAT+GGG | + | tig0020668:17321-17340 | None:intergenic | 30.0% |
| TTAAGGGATTAGAAGATCAA+TGG | + | tig0020668:17459-17478 | None:intergenic | 30.0% | |
| ACACAGACCAAAAAAAAGTT+GGG | + | tig0020668:17620-17639 | None:intergenic | 30.0% | |
| AACACAGACCAAAAAAAAGT+TGG | + | tig0020668:17621-17640 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTTTGGTCTGTGTT+AGG | - | tig0020668:17621-17640 | Msa1384600:intron | 30.0% |
| !!! | GTATTTGGTTCTAATTTTGG+AGG | + | tig0020668:17868-17887 | None:intergenic | 30.0% |
| ACATGTGTATTCAATTGACA+GGG | + | tig0020668:17914-17933 | None:intergenic | 30.0% | |
| TACATGTGTATTCAATTGAC+AGG | + | tig0020668:17915-17934 | None:intergenic | 30.0% | |
| ! | ATTGGAATCCATGTGATTTT+TGG | + | tig0020668:18034-18053 | None:intergenic | 30.0% |
| AACATAGGTACAAAAGGAAT+GGG | + | tig0020668:18074-18093 | None:intergenic | 30.0% | |
| TAACATAGGTACAAAAGGAA+TGG | + | tig0020668:18075-18094 | None:intergenic | 30.0% | |
| TATGCATATATATGTGCTTG+GGG | + | tig0020668:18224-18243 | None:intergenic | 30.0% | |
| ! | TACAAAAGTGCATTTATCGA+AGG | - | tig0020668:18331-18350 | Msa1384600:intron | 30.0% |
| AAGTTTACTCTTAACACAGT+TGG | - | tig0020668:18449-18468 | Msa1384600:intron | 30.0% | |
| AGTTTACTCTTAACACAGTT+GGG | - | tig0020668:18450-18469 | Msa1384600:intron | 30.0% | |
| TGAGAATAACAAAAACCCAA+AGG | + | tig0020668:18638-18657 | None:intergenic | 30.0% | |
| ATATTTGTCTTTAGGCTTGT+TGG | - | tig0020668:18760-18779 | Msa1384600:intron | 30.0% | |
| !! | AAGTTGATAGATTCTCTTGT+TGG | - | tig0020668:18804-18823 | Msa1384600:intron | 30.0% |
| TCTAATGCTAGTATAGACTA+TGG | - | tig0020668:19012-19031 | Msa1384600:intron | 30.0% | |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | tig0020668:19139-19158 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | tig0020668:19140-19159 | None:intergenic | 30.0% |
| GATATTCTCAATCAAAAAGG+AGG | + | tig0020668:19367-19386 | None:intergenic | 30.0% | |
| ! | ATGGGTCTTGATGTTTTATA+TGG | - | tig0020668:19668-19687 | Msa1384600:intron | 30.0% |
| ! | GTCTTGATGTTTTATATGGT+TGG | - | tig0020668:19672-19691 | Msa1384600:intron | 30.0% |
| ! | AATGGTGATGTTGTCAATAA+CGG | - | tig0020668:20182-20201 | Msa1384600:intron | 30.0% |
| AGCTACTACATATTCTCTTT+CGG | + | tig0020668:20405-20424 | None:intergenic | 30.0% | |
| TCATGGTTAAGAGGTTTATT+AGG | - | tig0020668:20623-20642 | Msa1384600:CDS | 30.0% | |
| CATGGTTAAGAGGTTTATTA+GGG | - | tig0020668:20624-20643 | Msa1384600:CDS | 30.0% | |
| TTATTAGGGTGCATGAATTT+AGG | - | tig0020668:20638-20657 | Msa1384600:CDS | 30.0% | |
| TATTAGGGTGCATGAATTTA+GGG | - | tig0020668:20639-20658 | Msa1384600:CDS | 30.0% | |
| GGGTATGTTATAACATATTC+TGG | - | tig0020668:20659-20678 | Msa1384600:CDS | 30.0% | |
| ATACTTCATTCATAGCACGT+TGG | + | tig0020668:15951-15970 | None:intergenic | 35.0% | |
| AACGTGCTATGAATGAAGTA+TGG | - | tig0020668:15950-15969 | Msa1384600:CDS | 35.0% | |
| !! | TGCTCTTGCCATTATTTTTC+AGG | - | tig0020668:16053-16072 | Msa1384600:CDS | 35.0% |
| GAACTTTAGACCCAATACAT+TGG | - | tig0020668:16452-16471 | Msa1384600:CDS | 35.0% | |
| !!! | AAAAACGGCTACTTTTAAGG+CGG | - | tig0020668:16561-16580 | Msa1384600:CDS | 35.0% |
| AAAGGGACACACATTTAGTT+TGG | + | tig0020668:16595-16614 | None:intergenic | 35.0% | |
| !!! | TGGACCTCCTTTTTTTCATT+TGG | - | tig0020668:16654-16673 | Msa1384600:CDS | 35.0% |
| ATAGGATTTCATGCCAAGAA+AGG | + | tig0020668:16715-16734 | None:intergenic | 35.0% | |
| !! | TAGAGTACTGTATGGTAGAA+AGG | + | tig0020668:16921-16940 | None:intergenic | 35.0% |
| !! | TAGAGTAGTAGAGTACTGTA+TGG | + | tig0020668:16929-16948 | None:intergenic | 35.0% |
| CTCTAACTAACTGTGTAAAG+TGG | + | tig0020668:16986-17005 | None:intergenic | 35.0% | |
| AATTAGCTAGAGAAAAGCTG+TGG | + | tig0020668:17095-17114 | None:intergenic | 35.0% | |
| ! | ACAGCTTTTCTCTAGCTAAT+TGG | - | tig0020668:17094-17113 | Msa1384600:intron | 35.0% |
| TATTCGTAGAAATCTGCAGT+TGG | - | tig0020668:17133-17152 | Msa1384600:intron | 35.0% | |
| CTGAATTCAAATCCAAAAGG+TGG | + | tig0020668:17211-17230 | None:intergenic | 35.0% | |
| GTAGAATTATTACCCATTCG+TGG | - | tig0020668:17306-17325 | Msa1384600:intron | 35.0% | |
| ! | GTGCTTAATTTTACCACGAA+TGG | + | tig0020668:17322-17341 | None:intergenic | 35.0% |
| AGGAAAGTCTGCACATAAAA+TGG | - | tig0020668:17575-17594 | Msa1384600:intron | 35.0% | |
| ACATAGGTACAAAAGGAATG+GGG | + | tig0020668:18073-18092 | None:intergenic | 35.0% | |
| GCTTCTAACATAGGTACAAA+AGG | + | tig0020668:18080-18099 | None:intergenic | 35.0% | |
| CTATGTTAGAAGCTCTCATT+GGG | - | tig0020668:18087-18106 | Msa1384600:intron | 35.0% | |
| ATGCATATATATGTGCTTGG+GGG | + | tig0020668:18223-18242 | None:intergenic | 35.0% | |
| TCTTAACACAGTTGGGTTTA+GGG | - | tig0020668:18457-18476 | Msa1384600:intron | 35.0% | |
| ! | ATTGCTACTCCTTTAGAAGA+TGG | - | tig0020668:18692-18711 | Msa1384600:intron | 35.0% |
| ! | TTGCTACTCCTTTAGAAGAT+GGG | - | tig0020668:18693-18712 | Msa1384600:intron | 35.0% |
| ATGACCGGATATTTGTCTTT+AGG | - | tig0020668:18752-18771 | Msa1384600:intron | 35.0% | |
| CAAGCCTAAAGACAAATATC+CGG | + | tig0020668:18759-18778 | None:intergenic | 35.0% | |
| ! | TTCCAATAAAGGTATGGTCA+AGG | + | tig0020668:18842-18861 | None:intergenic | 35.0% |
| AAAAATGGGTCAGTTATTCC+AGG | + | tig0020668:19103-19122 | None:intergenic | 35.0% | |
| TGTATAAATGAAGGGGAAAG+TGG | + | tig0020668:19243-19262 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | tig0020668:19273-19292 | Msa1384600:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | tig0020668:19286-19305 | Msa1384600:intron | 35.0% | |
| ! | GAAGGGGAGTATATGATAAT+AGG | - | tig0020668:19313-19332 | Msa1384600:intron | 35.0% |
| TCAATCAAAAAGGAGGTAGT+TGG | + | tig0020668:19360-19379 | None:intergenic | 35.0% | |
| CTTCCACCATATCTTATCTA+TGG | - | tig0020668:19386-19405 | Msa1384600:intron | 35.0% | |
| CTTCCATAGATAAGATATGG+TGG | + | tig0020668:19392-19411 | None:intergenic | 35.0% | |
| TCCAATTACAATTCCCGAAA+CGG | + | tig0020668:20060-20079 | None:intergenic | 35.0% | |
| ! | ATTGCTATTATTAATGGGCC+TGG | - | tig0020668:20122-20141 | Msa1384600:intron | 35.0% |
| ! | GGAGTATTAGTAGAATTTGC+CGG | - | tig0020668:20203-20222 | Msa1384600:intron | 35.0% |
| GTTAACCGAATTAGTTGAAC+CGG | - | tig0020668:20361-20380 | Msa1384600:intron | 35.0% | |
| TTTCAACTTAAGAAACCCAG+AGG | - | tig0020668:20448-20467 | Msa1384600:intron | 35.0% | |
| TCCATAACAGGATTCATTGT+AGG | - | tig0020668:20491-20510 | Msa1384600:intron | 35.0% | |
| TCCTACAATGAATCCTGTTA+TGG | + | tig0020668:20495-20514 | None:intergenic | 35.0% | |
| AGGATTCATTGTAGGATCAT+TGG | - | tig0020668:20499-20518 | Msa1384600:intron | 35.0% | |
| CGTGAGTAGGTTTAGATTAA+GGG | - | tig0020668:20598-20617 | Msa1384600:CDS | 35.0% | |
| TGGTTGTGATGAAGAAGAAG+AGG | + | tig0020668:15815-15834 | None:intergenic | 40.0% | |
| GGAGTAATTGAAGGTGAAGA+TGG | + | tig0020668:15835-15854 | None:intergenic | 40.0% | |
| GAGGAAGAAGCAACATCATA+AGG | + | tig0020668:15856-15875 | None:intergenic | 40.0% | |
| AATGTCAGCAGCAACATTTG+AGG | + | tig0020668:15875-15894 | None:intergenic | 40.0% | |
| TGAACCTGTTGTTGAAGCAT+TGG | - | tig0020668:15975-15994 | Msa1384600:CDS | 40.0% | |
| !!! | AAAACGGCTACTTTTAAGGC+GGG | - | tig0020668:16562-16581 | Msa1384600:CDS | 40.0% |
| TGTGTGTCCCTTTCACAAAA+AGG | - | tig0020668:16602-16621 | Msa1384600:CDS | 40.0% | |
| GTGTGTCCCTTTCACAAAAA+GGG | - | tig0020668:16603-16622 | Msa1384600:CDS | 40.0% | |
| GATAGAAAAAAGGCAAGCCA+TGG | + | tig0020668:16792-16811 | None:intergenic | 40.0% | |
| !!! | GTACAATTTTTGGTCCGGTT+TGG | - | tig0020668:17016-17035 | Msa1384600:intron | 40.0% |
| ACCCAACTGTGCATATGTTA+GGG | + | tig0020668:17164-17183 | None:intergenic | 40.0% | |
| AACCCAACTGTGCATATGTT+AGG | + | tig0020668:17165-17184 | None:intergenic | 40.0% | |
| TAACATATGCACAGTTGGGT+TGG | - | tig0020668:17164-17183 | Msa1384600:intron | 40.0% | |
| ! | AAGTGGTTAGATCCACCTTT+TGG | - | tig0020668:17196-17215 | Msa1384600:intron | 40.0% |
| ! | TTGGTCTGTGTTAGGTTTTG+CGG | - | tig0020668:17629-17648 | Msa1384600:intron | 40.0% |
| GGTATTGTCAAGGCAAGAAT+TGG | + | tig0020668:18052-18071 | None:intergenic | 40.0% | |
| !! | AAAGGAATGGGGTATTGTCA+AGG | + | tig0020668:18062-18081 | None:intergenic | 40.0% |
| CCAATGAGAGCTTCTAACAT+AGG | + | tig0020668:18089-18108 | None:intergenic | 40.0% | |
| CCTATGTTAGAAGCTCTCAT+TGG | - | tig0020668:18086-18105 | Msa1384600:intron | 40.0% | |
| TGCATATATATGTGCTTGGG+GGG | + | tig0020668:18222-18241 | None:intergenic | 40.0% | |
| CTCTTAACACAGTTGGGTTT+AGG | - | tig0020668:18456-18475 | Msa1384600:intron | 40.0% | |
| ! | TGCTACTCCTTTAGAAGATG+GGG | - | tig0020668:18694-18713 | Msa1384600:intron | 40.0% |
| CATGTAGCAAGAAAGATGAC+CGG | - | tig0020668:18737-18756 | Msa1384600:intron | 40.0% | |
| !! | TTTGTCTTTAGGCTTGTTGG+AGG | - | tig0020668:18763-18782 | Msa1384600:intron | 40.0% |
| !! | TTGTCTTTAGGCTTGTTGGA+GGG | - | tig0020668:18764-18783 | Msa1384600:intron | 40.0% |
| AGCCTTGACCATACCTTTAT+TGG | - | tig0020668:18837-18856 | Msa1384600:intron | 40.0% | |
| ATCAAAAGCTATAGCTAGCG+TGG | + | tig0020668:18890-18909 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | tig0020668:19289-19308 | None:intergenic | 40.0% | |
| GTAGGTCAATTATACCGGAA+CGG | - | tig0020668:19291-19310 | Msa1384600:intron | 40.0% | |
| TCAATTATACCGGAACGGAA+GGG | - | tig0020668:19296-19315 | Msa1384600:intron | 40.0% | |
| ATGTTGTGTTCCCATTCAGA+GGG | + | tig0020668:19474-19493 | None:intergenic | 40.0% | |
| TATGGTTGGAAAATGCATGC+AGG | - | tig0020668:19686-19705 | Msa1384600:intron | 40.0% | |
| GCGCAGAACATATAGATTGA+GGG | - | tig0020668:19776-19795 | Msa1384600:intron | 40.0% | |
| GGCAGTTAGAATACATCTAC+TGG | - | tig0020668:19805-19824 | Msa1384600:intron | 40.0% | |
| ! | ATACATCTACTGGCATCGAA+CGG | - | tig0020668:19815-19834 | Msa1384600:intron | 40.0% |
| GATCTCCTGGATCATATTGT+GGG | + | tig0020668:19878-19897 | None:intergenic | 40.0% | |
| TGATCTCCTGGATCATATTG+TGG | + | tig0020668:19879-19898 | None:intergenic | 40.0% | |
| AAATGTGCTAACATGTGCAC+CGG | + | tig0020668:19997-20016 | None:intergenic | 40.0% | |
| ! | GTGCACATGTTAGCACATTT+TGG | - | tig0020668:19997-20016 | Msa1384600:intron | 40.0% |
| TCCAACCATGGTCTTCTATT+CGG | - | tig0020668:20020-20039 | Msa1384600:intron | 40.0% | |
| TCCGTTTCGGGAATTGTAAT+TGG | - | tig0020668:20056-20075 | Msa1384600:intron | 40.0% | |
| TTCATTAACCGATCCGGAAA+CGG | - | tig0020668:20322-20341 | Msa1384600:intron | 40.0% | |
| CATATTCTCTTTCGGTGACT+CGG | + | tig0020668:20397-20416 | None:intergenic | 40.0% | |
| AGCTTGCACAAGTACAAGAT+TGG | - | tig0020668:20421-20440 | Msa1384600:intron | 40.0% | |
| CATCACGTAATAGAACCTCT+GGG | + | tig0020668:20466-20485 | None:intergenic | 40.0% | |
| ACATCACGTAATAGAACCTC+TGG | + | tig0020668:20467-20486 | None:intergenic | 40.0% | |
| ATCATTGGATGTTAGCCATG+AGG | - | tig0020668:20514-20533 | Msa1384600:intron | 40.0% | |
| ! | TAGCCATGAGGTTTTTGTTG+TGG | - | tig0020668:20526-20545 | Msa1384600:intron | 40.0% |
| ! | TTTGTTGTGGTGGAAAGAAG+TGG | - | tig0020668:20539-20558 | Msa1384600:intron | 40.0% |
| GCGTGAGTAGGTTTAGATTA+AGG | - | tig0020668:20597-20616 | Msa1384600:CDS | 40.0% | |
| GGTTTAGATTAAGGGCTTCA+TGG | - | tig0020668:20606-20625 | Msa1384600:CDS | 40.0% | |
| TTAAGGGCTTCATGGTTAAG+AGG | - | tig0020668:20614-20633 | Msa1384600:CDS | 40.0% | |
| ! | ATAACATATTCTGGTGGGTC+TGG | - | tig0020668:20668-20687 | Msa1384600:CDS | 40.0% |
| !! | GTCTGGTTTGTTGAGAGTAT+GGG | - | tig0020668:20685-20704 | Msa1384600:CDS | 40.0% |
| CTTCTCCATCATCTCTAACT+GGG | + | tig0020668:20748-20767 | None:intergenic | 40.0% | |
| ACAAGTACATGGCAATAGCA+TGG | - | tig0020668:20769-20788 | Msa1384600:CDS | 40.0% | |
| AATGTTGCTGCTGACATTCC+TGG | - | tig0020668:15877-15896 | Msa1384600:CDS | 45.0% | |
| !! | CAGGTTGATGAGAAGTGCTA+GGG | + | tig0020668:15903-15922 | None:intergenic | 45.0% |
| !! | TCAGGTTGATGAGAAGTGCT+AGG | + | tig0020668:15904-15923 | None:intergenic | 45.0% |
| GAAGAAGATGAAGGAGGTTC+AGG | + | tig0020668:15922-15941 | None:intergenic | 45.0% | |
| GTAGCCAATGCTTCAACAAC+AGG | + | tig0020668:15982-16001 | None:intergenic | 45.0% | |
| GTATCTGCGTATATCTCTGC+AGG | + | tig0020668:16325-16344 | None:intergenic | 45.0% | |
| TGCCCTAACATATGCACAGT+TGG | - | tig0020668:17159-17178 | Msa1384600:intron | 45.0% | |
| GCCCTAACATATGCACAGTT+GGG | - | tig0020668:17160-17179 | Msa1384600:intron | 45.0% | |
| !! | TATGCACAGTTGGGTTGGAT+CGG | - | tig0020668:17169-17188 | Msa1384600:intron | 45.0% |
| CCATCAACCCCATCTTCTAA+AGG | + | tig0020668:18704-18723 | None:intergenic | 45.0% | |
| ! | CCTTTAGAAGATGGGGTTGA+TGG | - | tig0020668:18701-18720 | Msa1384600:intron | 45.0% |
| !! | TGGGGTTGATGGTTTGTTAG+TGG | - | tig0020668:18712-18731 | Msa1384600:intron | 45.0% |
| !! | TGTCTTTAGGCTTGTTGGAG+GGG | - | tig0020668:18765-18784 | Msa1384600:intron | 45.0% |
| ATGGGTCAGTTATTCCAGGA+CGG | + | tig0020668:19099-19118 | None:intergenic | 45.0% | |
| GTCAATTATACCGGAACGGA+AGG | - | tig0020668:19295-19314 | Msa1384600:intron | 45.0% | |
| CAATTATACCGGAACGGAAG+GGG | - | tig0020668:19297-19316 | Msa1384600:intron | 45.0% | |
| AAGGAGGTAGTTGGATGAGA+TGG | + | tig0020668:19351-19370 | None:intergenic | 45.0% | |
| GATGTTGTGTTCCCATTCAG+AGG | + | tig0020668:19475-19494 | None:intergenic | 45.0% | |
| ! | GCATGCAGGTTTGTTCAACA+TGG | - | tig0020668:19700-19719 | Msa1384600:intron | 45.0% |
| !! | ATGGAGAGAAGTGTCACGTT+CGG | - | tig0020668:19719-19738 | Msa1384600:intron | 45.0% |
| GGCGCAGAACATATAGATTG+AGG | - | tig0020668:19775-19794 | Msa1384600:intron | 45.0% | |
| CATATAGATTGAGGGACACG+TGG | - | tig0020668:19784-19803 | Msa1384600:intron | 45.0% | |
| !! | AGCACATTTTGGTCCAACCA+TGG | - | tig0020668:20008-20027 | Msa1384600:intron | 45.0% |
| !! | CCGAAACGGATTGTGAAAAC+GGG | + | tig0020668:20046-20065 | None:intergenic | 45.0% |
| ! | CCCGTTTTCACAATCCGTTT+CGG | - | tig0020668:20043-20062 | Msa1384600:intron | 45.0% |
| !! | CCCGAAACGGATTGTGAAAA+CGG | + | tig0020668:20047-20066 | None:intergenic | 45.0% |
| ! | CCGTTTTCACAATCCGTTTC+GGG | - | tig0020668:20044-20063 | Msa1384600:intron | 45.0% |
| ATCTCCATCTAATCTCGCGA+AGG | + | tig0020668:20096-20115 | None:intergenic | 45.0% | |
| !! | TGGTGGGTTGGTTTATATGC+TGG | - | tig0020668:20236-20255 | Msa1384600:intron | 45.0% |
| TGGTTTATATGCTGGCCATG+CGG | - | tig0020668:20244-20263 | Msa1384600:intron | 45.0% | |
| ACCGAATTAGTTGAACCGGT+CGG | - | tig0020668:20365-20384 | Msa1384600:intron | 45.0% | |
| ! | ACCGACCGGTTCAACTAATT+CGG | + | tig0020668:20369-20388 | None:intergenic | 45.0% |
| CGTGATGTAGTGTCCATAAC+AGG | - | tig0020668:20479-20498 | Msa1384600:intron | 45.0% | |
| CCACCACAACAAAAACCTCA+TGG | + | tig0020668:20532-20551 | None:intergenic | 45.0% | |
| !! | CCATGAGGTTTTTGTTGTGG+TGG | - | tig0020668:20529-20548 | Msa1384600:intron | 45.0% |
| ! | GAAGTGGTGTTGGAACTGTT+CGG | - | tig0020668:20555-20574 | Msa1384600:intron | 45.0% |
| ATAATTTCGAGCGCGTGAGT+AGG | - | tig0020668:20585-20604 | Msa1384600:intron | 45.0% | |
| !! | GGTCTGGTTTGTTGAGAGTA+TGG | - | tig0020668:20684-20703 | Msa1384600:CDS | 45.0% |
| ATGGGACATACATGAACCTG+CGG | - | tig0020668:20703-20722 | Msa1384600:CDS | 45.0% | |
| CCTTCTCCATCATCTCTAAC+TGG | + | tig0020668:20749-20768 | None:intergenic | 45.0% | |
| !! | CCAGTTAGAGATGATGGAGA+AGG | - | tig0020668:20746-20765 | Msa1384600:CDS | 45.0% |
| GATGGAGAAGGACAAGTACA+TGG | - | tig0020668:20758-20777 | Msa1384600:CDS | 45.0% | |
| GGTTGCTAATCAAACTCACG+TGG | - | tig0020668:20790-20809 | Msa1384600:CDS | 45.0% | |
| !!! | TATAAAAATAATATTTCTTT+TGG | - | tig0020668:16386-16405 | Msa1384600:CDS | 5.0% |
| !!! | AATAATTTTTTTTTTAAGAA+AGG | - | tig0020668:17942-17961 | Msa1384600:intron | 5.0% |
| CGAGAGGAAGAAGATGAAGG+AGG | + | tig0020668:15928-15947 | None:intergenic | 50.0% | |
| TGGCGAGAGGAAGAAGATGA+AGG | + | tig0020668:15931-15950 | None:intergenic | 50.0% | |
| ATTCATAGCACGTTGGCGAG+AGG | + | tig0020668:15944-15963 | None:intergenic | 50.0% | |
| !! | ATGCACAGTTGGGTTGGATC+GGG | - | tig0020668:17170-17189 | Msa1384600:intron | 50.0% |
| ATTGTATACTCCCTCCGTCC+TGG | - | tig0020668:19082-19101 | Msa1384600:intron | 50.0% | |
| GTCAGTTATTCCAGGACGGA+GGG | + | tig0020668:19095-19114 | None:intergenic | 50.0% | |
| CATATACTCCCCTTCCGTTC+CGG | + | tig0020668:19308-19327 | None:intergenic | 50.0% | |
| AATCGCACCTTCCCTCTGAA+TGG | - | tig0020668:19460-19479 | Msa1384600:intron | 50.0% | |
| ATCGCACCTTCCCTCTGAAT+GGG | - | tig0020668:19461-19480 | Msa1384600:intron | 50.0% | |
| TGTGTTCCCATTCAGAGGGA+AGG | + | tig0020668:19470-19489 | None:intergenic | 50.0% | |
| TGTCACGTTCGGATCTACTG+TGG | - | tig0020668:19730-19749 | Msa1384600:intron | 50.0% | |
| GACCACTAAAGCATGTCTCC+CGG | + | tig0020668:19856-19875 | None:intergenic | 50.0% | |
| GTGGTCCCACAATATGATCC+AGG | - | tig0020668:19870-19889 | Msa1384600:intron | 50.0% | |
| !!! | AGGTTTTGGTGGTGATCTCC+TGG | + | tig0020668:19891-19910 | None:intergenic | 50.0% |
| GCCGAATAGAAGACCATGGT+TGG | + | tig0020668:20024-20043 | None:intergenic | 50.0% | |
| ATCTAATCTCGCGAAGGCGA+GGG | + | tig0020668:20090-20109 | None:intergenic | 50.0% | |
| !! | AATTTGCCGGCTCTAGTCGT+TGG | - | tig0020668:20216-20235 | Msa1384600:intron | 50.0% |
| GGTTTATATGCTGGCCATGC+GGG | - | tig0020668:20245-20264 | Msa1384600:intron | 50.0% | |
| ! | GGGCGGGGCTTTTCAAATAT+GGG | - | tig0020668:20265-20284 | Msa1384600:intron | 50.0% |
| TGGCGGTTCATTAACCGATC+CGG | - | tig0020668:20316-20335 | Msa1384600:intron | 50.0% | |
| TCCTTGAACCGTTTCCGGAT+CGG | + | tig0020668:20333-20352 | None:intergenic | 50.0% | |
| ATCCGGAAACGGTTCAAGGA+TGG | - | tig0020668:20333-20352 | Msa1384600:intron | 50.0% | |
| TGCCATCCTTGAACCGTTTC+CGG | + | tig0020668:20338-20357 | None:intergenic | 50.0% | |
| ! | GTGGTGGAAAGAAGTGGTGT+TGG | - | tig0020668:20545-20564 | Msa1384600:intron | 50.0% |
| ACGCTCCCAGTTAGAGATGA+TGG | - | tig0020668:20740-20759 | Msa1384600:CDS | 50.0% | |
| !! | TGATGAGAAGTGCTAGGGCC+AGG | + | tig0020668:15898-15917 | None:intergenic | 55.0% |
| ! | TGGGTTGGATCGGGTAGAAG+TGG | - | tig0020668:17179-17198 | Msa1384600:intron | 55.0% |
| GGTCAGTTATTCCAGGACGG+AGG | + | tig0020668:19096-19115 | None:intergenic | 55.0% | |
| GTTCGGATCTACTGTGGCAG+AGG | - | tig0020668:19736-19755 | Msa1384600:intron | 55.0% | |
| ACGGCCAGGAACTTTACCAC+CGG | - | tig0020668:19834-19853 | Msa1384600:intron | 55.0% | |
| TCTCCCGGTGGTAAAGTTCC+TGG | + | tig0020668:19841-19860 | None:intergenic | 55.0% | |
| CACTAAAGCATGTCTCCCGG+TGG | + | tig0020668:19853-19872 | None:intergenic | 55.0% | |
| CACCGGGAGACATGCTTTAG+TGG | - | tig0020668:19851-19870 | Msa1384600:intron | 55.0% | |
| !! | AGCGGCAGATGAGGTTTTGG+TGG | + | tig0020668:19902-19921 | None:intergenic | 55.0% |
| CGGTGTGGAGATCGAAGAGT+CGG | + | tig0020668:19977-19996 | None:intergenic | 55.0% | |
| CGACTCTTCGATCTCCACAC+CGG | - | tig0020668:19975-19994 | Msa1384600:intron | 55.0% | |
| ! | TGCTAACATGTGCACCGGTG+TGG | + | tig0020668:19992-20011 | None:intergenic | 55.0% |
| ACGGGCCGAATAGAAGACCA+TGG | + | tig0020668:20028-20047 | None:intergenic | 55.0% | |
| CATCTAATCTCGCGAAGGCG+AGG | + | tig0020668:20091-20110 | None:intergenic | 55.0% | |
| CTCGCCTTCGCGAGATTAGA+TGG | - | tig0020668:20089-20108 | Msa1384600:intron | 55.0% | |
| AATGGGCCTGGACCAATACC+CGG | - | tig0020668:20134-20153 | Msa1384600:intron | 55.0% | |
| ATTGCCCGTCGTGCAGGAAT+GGG | + | tig0020668:20161-20180 | None:intergenic | 55.0% | |
| AATTGCCCGTCGTGCAGGAA+TGG | + | tig0020668:20162-20181 | None:intergenic | 55.0% | |
| CCATTAATTGCCCGTCGTGC+AGG | + | tig0020668:20167-20186 | None:intergenic | 55.0% | |
| CCTGCACGACGGGCAATTAA+TGG | - | tig0020668:20164-20183 | Msa1384600:intron | 55.0% | |
| AACCCACCAACGACTAGAGC+CGG | + | tig0020668:20225-20244 | None:intergenic | 55.0% | |
| TTATATGCTGGCCATGCGGG+CGG | - | tig0020668:20248-20267 | Msa1384600:intron | 55.0% | |
| ! | CGGGCGGGGCTTTTCAAATA+TGG | - | tig0020668:20264-20283 | Msa1384600:intron | 55.0% |
| ! | GAACAGCGCGTGTTTGTTGG+CGG | - | tig0020668:20299-20318 | Msa1384600:intron | 55.0% |
| ACCGATCCGGAAACGGTTCA+AGG | - | tig0020668:20329-20348 | Msa1384600:intron | 55.0% | |
| AGAGGCTCACGAGACGCATC+TGG | - | tig0020668:19754-19773 | Msa1384600:intron | 60.0% | |
| ! | TCTACTGGCATCGAACGGCC+AGG | - | tig0020668:19820-19839 | Msa1384600:intron | 60.0% |
| CGGCCAGGAACTTTACCACC+GGG | - | tig0020668:19835-19854 | Msa1384600:intron | 60.0% | |
| ! | GGCAGCGGCAGATGAGGTTT+TGG | + | tig0020668:19905-19924 | None:intergenic | 60.0% |
| TGTCGGAGAGAGTGAGGCAG+CGG | + | tig0020668:19920-19939 | None:intergenic | 60.0% | |
| ATGGGCCTGGACCAATACCC+GGG | - | tig0020668:20135-20154 | Msa1384600:intron | 60.0% | |
| !! | TTGCCGGCTCTAGTCGTTGG+TGG | - | tig0020668:20219-20238 | Msa1384600:intron | 60.0% |
| !! | TGCCGGCTCTAGTCGTTGGT+GGG | - | tig0020668:20220-20239 | Msa1384600:intron | 60.0% |
| ! | GGCTCTAGTCGTTGGTGGGT+TGG | - | tig0020668:20224-20243 | Msa1384600:intron | 60.0% |
| TATATGCTGGCCATGCGGGC+GGG | - | tig0020668:20249-20268 | Msa1384600:intron | 60.0% | |
| TTTGAAAAGCCCCGCCCGCA+TGG | + | tig0020668:20262-20281 | None:intergenic | 60.0% | |
| GTGATACACAATCGCGCCGC+AGG | + | tig0020668:20722-20741 | None:intergenic | 60.0% | |
| GAGTGAGGCAGCGGCAGATG+AGG | + | tig0020668:19911-19930 | None:intergenic | 65.0% | |
| !! | GGTGGGTGTCGGAGAGAGTG+AGG | + | tig0020668:19926-19945 | None:intergenic | 65.0% |
| !! | ATGGGCCCGGGTATTGGTCC+AGG | + | tig0020668:20143-20162 | None:intergenic | 65.0% |
| GCAGGAATGGGCCCGGGTAT+TGG | + | tig0020668:20149-20168 | None:intergenic | 65.0% | |
| ATATGCTGGCCATGCGGGCG+GGG | - | tig0020668:20250-20269 | Msa1384600:intron | 65.0% | |
| ! | GTGACTCGGACTCGACCGAC+CGG | + | tig0020668:20383-20402 | None:intergenic | 65.0% |
| TCCGACACCCACCTCGCCTG+CGG | - | tig0020668:19933-19952 | Msa1384600:intron | 70.0% | |
| GACGAAGCCGCAGGCGAGGT+GGG | + | tig0020668:19943-19962 | None:intergenic | 70.0% | |
| CTCGCCTGCGGCTTCGTCGA+CGG | - | tig0020668:19945-19964 | Msa1384600:intron | 70.0% | |
| ACTGCCGTCGACGAAGCCGC+AGG | + | tig0020668:19952-19971 | None:intergenic | 70.0% | |
| CGTCGTGCAGGAATGGGCCC+GGG | + | tig0020668:20155-20174 | None:intergenic | 70.0% | |
| CCGTCGTGCAGGAATGGGCC+CGG | + | tig0020668:20156-20175 | None:intergenic | 70.0% | |
| CCGGGCCCATTCCTGCACGA+CGG | - | tig0020668:20153-20172 | Msa1384600:intron | 70.0% | |
| CGGGCCCATTCCTGCACGAC+GGG | - | tig0020668:20154-20173 | Msa1384600:intron | 70.0% | |
| GCCGCAGGCGAGGTGGGTGT+CGG | + | tig0020668:19937-19956 | None:intergenic | 75.0% | |
| CGACGAAGCCGCAGGCGAGG+TGG | + | tig0020668:19944-19963 | None:intergenic | 75.0% | |
| CGTCGACGAAGCCGCAGGCG+AGG | + | tig0020668:19947-19966 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020668 | gene | 15799 | 20865 | 15799 | ID=Msa1384600;Name=Msa1384600 |
| tig0020668 | mRNA | 15799 | 20865 | 15799 | ID=Msa1384600-mRNA-1;Parent=Msa1384600;Name=Msa1384600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|477 |
| tig0020668 | exon | 20590 | 20865 | 20590 | ID=Msa1384600-mRNA-1:exon:9153;Parent=Msa1384600-mRNA-1 |
| tig0020668 | exon | 15799 | 16956 | 15799 | ID=Msa1384600-mRNA-1:exon:9152;Parent=Msa1384600-mRNA-1 |
| tig0020668 | CDS | 20590 | 20865 | 20590 | ID=Msa1384600-mRNA-1:cds;Parent=Msa1384600-mRNA-1 |
| tig0020668 | CDS | 15799 | 16956 | 15799 | ID=Msa1384600-mRNA-1:cds;Parent=Msa1384600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
