Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868120 | AES97253.1 | 45.833 | 72 | 38 | 1 | 5 | 75 | 3 | 74 | 5.18e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868120 | G7JZ68 | 45.833 | 72 | 38 | 1 | 5 | 75 | 3 | 74 | 2.47e-11 | 63.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0770570 | Msa0868120 | 0.813420 | 2.583482e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868120 | MtrunA17_Chr5g0420391 | 45.833 | 72 | 38 | 1 | 5 | 75 | 3 | 74 | 4.76e-15 | 63.9 |
| Msa0868120 | MtrunA17_Chr1g0174091 | 43.056 | 72 | 40 | 1 | 5 | 75 | 3 | 74 | 7.35e-13 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGCGCCTAGGTGCCTT+AGG | 0.421896 | 6_1:+1605336 | None:intergenic |
| TTCTTCACAGGTGGGCGCCT+AGG | 0.472407 | 6_1:+1605327 | None:intergenic |
| AAGAAGCTATGAGGAAAGCT+AGG | 0.482549 | 6_1:-1605173 | Msa0868120:CDS |
| AGATTATCATACCTAGTCAC+TGG | 0.529590 | 6_1:+1605282 | None:intergenic |
| TGATAATCTAACATTGAGGT+TGG | 0.535686 | 6_1:-1605268 | Msa0868120:CDS |
| GCTTAGTGATGCGCCACCTA+AGG | 0.536777 | 6_1:-1605352 | Msa0868120:CDS |
| CTTTCTGATGCATCAATCTG+AGG | 0.547707 | 6_1:-1605211 | Msa0868120:CDS |
| TGGAGTTGAAAGAAGCTATG+AGG | 0.551746 | 6_1:-1605182 | Msa0868120:CDS |
| TTTCTGATGCATCAATCTGA+GGG | 0.571150 | 6_1:-1605210 | Msa0868120:CDS |
| GCCCACCTGTGAAGAAAACA+AGG | 0.591582 | 6_1:-1605320 | Msa0868120:CDS |
| TTGATGAAGAACCAGTGACT+AGG | 0.608687 | 6_1:-1605293 | Msa0868120:CDS |
| GGGCGCCTAGGTGCCTTAGG+TGG | 0.608863 | 6_1:+1605339 | None:intergenic |
| TGAAATGGATGTCAAGTGGT+TGG | 0.619229 | 6_1:-1605379 | None:intergenic |
| ATGCGCCACCTAAGGCACCT+AGG | 0.634180 | 6_1:-1605344 | Msa0868120:CDS |
| AGAAGCTATGAGGAAAGCTA+GGG | 0.635718 | 6_1:-1605172 | Msa0868120:intron |
| GGTATGATAATCTAACATTG+AGG | 0.645495 | 6_1:-1605272 | Msa0868120:CDS |
| TCTGATGCATCAATCTGAGG+GGG | 0.659005 | 6_1:-1605208 | Msa0868120:CDS |
| ACCTGTGAAGAAAACAAGGG+AGG | 0.672962 | 6_1:-1605316 | Msa0868120:CDS |
| TTCTGATGCATCAATCTGAG+GGG | 0.687616 | 6_1:-1605209 | Msa0868120:CDS |
| ATTGAGGTTGGCGAATGATG+TGG | 0.692893 | 6_1:-1605256 | Msa0868120:CDS |
| TCGCTGAAATGGATGTCAAG+TGG | 0.704450 | 6_1:-1605383 | None:intergenic |
| CCCACCTGTGAAGAAAACAA+GGG | 0.777488 | 6_1:-1605319 | Msa0868120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATAATTAATTAGA+GGG | + | chr6_1:1602167-1602186 | None:intergenic | 10.0% |
| !! | TAAAACATATAATTAATTAG+AGG | + | chr6_1:1602168-1602187 | None:intergenic | 10.0% |
| !! | AAATCAATTAAAAAAAATCA+TGG | - | chr6_1:1602302-1602321 | Msa0868120:intron | 10.0% |
| !! | ATAAAAAAATGGAATAAAAA+TGG | - | chr6_1:1604316-1604335 | Msa0868120:intron | 10.0% |
| !! | GAGATATAAAAAAAAAAAAA+AGG | - | chr6_1:1604338-1604357 | Msa0868120:intron | 10.0% |
| !! | AATAAGTTAATATTAAAAAG+TGG | + | chr6_1:1605337-1605356 | None:intergenic | 10.0% |
| !! | TTTCATAAATGCAATAAAAT+GGG | + | chr6_1:1601852-1601871 | None:intergenic | 15.0% |
| !! | ATTTCATAAATGCAATAAAA+TGG | + | chr6_1:1601853-1601872 | None:intergenic | 15.0% |
| !! | AAGTGGAAAAATAAATTTAT+GGG | + | chr6_1:1601918-1601937 | None:intergenic | 15.0% |
| !! | AAAGTGGAAAAATAAATTTA+TGG | + | chr6_1:1601919-1601938 | None:intergenic | 15.0% |
| !! | ATATGATATAAAACTTGATA+AGG | - | chr6_1:1602035-1602054 | Msa0868120:intron | 15.0% |
| !!! | GATTTTTTTTAATTGATTTC+TGG | + | chr6_1:1602301-1602320 | None:intergenic | 15.0% |
| !! | CAAACAAAAAATTAAACAAA+TGG | - | chr6_1:1602467-1602486 | Msa0868120:intron | 15.0% |
| !!! | ATTTTAATGTTAATCATGAT+AGG | - | chr6_1:1602633-1602652 | Msa0868120:intron | 15.0% |
| !!! | TTATTTTTATCCTTAGTTTT+TGG | + | chr6_1:1602673-1602692 | None:intergenic | 15.0% |
| !! | CAATTTAAACATAAATAGAA+AGG | + | chr6_1:1602889-1602908 | None:intergenic | 15.0% |
| !!! | CTTCTATTGTTTTTTATTTT+TGG | - | chr6_1:1603354-1603373 | Msa0868120:intron | 15.0% |
| !! | TCTATTCTATTTCAATATAA+GGG | + | chr6_1:1604291-1604310 | None:intergenic | 15.0% |
| !! | AATAGACAGTTATAAAAAAA+TGG | - | chr6_1:1604305-1604324 | Msa0868120:intron | 15.0% |
| !! | TAAAAAAAAAAAAAAGGTGA+CGG | - | chr6_1:1604344-1604363 | Msa0868120:intron | 15.0% |
| !! | AACAAATTAAAATAGAACAA+TGG | - | chr6_1:1604374-1604393 | Msa0868120:intron | 15.0% |
| !! | AGATAGTTATAAATTGTAAA+AGG | + | chr6_1:1604958-1604977 | None:intergenic | 15.0% |
| !!! | TAACAATTTCCTTTCTTTTA+CGG | - | chr6_1:1601979-1601998 | Msa0868120:intron | 20.0% |
| !! | ATATAAAACTTGATAAGGAT+AGG | - | chr6_1:1602040-1602059 | Msa0868120:intron | 20.0% |
| !!! | ATGATTTTTTGAAGGAAAAA+AGG | + | chr6_1:1602243-1602262 | None:intergenic | 20.0% |
| !! | ACTAAGGATAAAAATAACAA+AGG | - | chr6_1:1602676-1602695 | Msa0868120:intron | 20.0% |
| !! | TTATTTCATAACATTTACAG+TGG | - | chr6_1:1602925-1602944 | Msa0868120:intron | 20.0% |
| !! | AAAGAATTATAGTAGAAGAA+TGG | + | chr6_1:1603076-1603095 | None:intergenic | 20.0% |
| !!! | CTATTGTTTTTTATTTTTGG+TGG | - | chr6_1:1603357-1603376 | Msa0868120:intron | 20.0% |
| !! | GTTTAGTAATTATACCAAAA+TGG | + | chr6_1:1603661-1603680 | None:intergenic | 20.0% |
| !! | GTCTATTCTATTTCAATATA+AGG | + | chr6_1:1604292-1604311 | None:intergenic | 20.0% |
| !!! | AAATATACTTCAAAAAGTGT+GGG | - | chr6_1:1604471-1604490 | Msa0868120:intron | 20.0% |
| !!! | GTTAAAATACATTTTGTTTC+TGG | - | chr6_1:1604733-1604752 | Msa0868120:intron | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | + | chr6_1:1604794-1604813 | None:intergenic | 20.0% |
| !!! | TAAATTGTAAAAGGTATAGT+AGG | + | chr6_1:1604949-1604968 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATTTACGTGATT+TGG | - | chr6_1:1605166-1605185 | Msa0868120:intron | 20.0% |
| !! | GTTAATACAACATTAAAAAG+TGG | + | chr6_1:1605302-1605321 | None:intergenic | 20.0% |
| !!! | GTATTTTAATCGATGTATTA+AGG | - | chr6_1:1605364-1605383 | Msa0868120:CDS | 20.0% |
| !!! | AATTCTAGAGTTTGAAATGA+TGG | - | chr6_1:1601674-1601693 | Msa0868120:intron | 25.0% |
| ! | ATTGCATTTATGAAATCATC+AGG | - | chr6_1:1601857-1601876 | Msa0868120:intron | 25.0% |
| ! | TTGAGAAGGAAAAAAAAAAG+TGG | + | chr6_1:1601935-1601954 | None:intergenic | 25.0% |
| !!! | AAAGGAAGATGATTTTTTGA+AGG | + | chr6_1:1602251-1602270 | None:intergenic | 25.0% |
| !! | AAATCATCTTCCTTTTTCTT+AGG | - | chr6_1:1602256-1602275 | Msa0868120:intron | 25.0% |
| !! | AATCATCTTCCTTTTTCTTA+GGG | - | chr6_1:1602257-1602276 | Msa0868120:intron | 25.0% |
| ! | GCTTTGATATAACTTTGTAA+AGG | + | chr6_1:1602371-1602390 | None:intergenic | 25.0% |
| ! | AATTTGAAAAGAGATGAAAC+AGG | + | chr6_1:1602412-1602431 | None:intergenic | 25.0% |
| ! | AATGGAAAAAAAGTGATTGT+AGG | - | chr6_1:1602485-1602504 | Msa0868120:intron | 25.0% |
| ! | ATGGAAAAAAAGTGATTGTA+GGG | - | chr6_1:1602486-1602505 | Msa0868120:intron | 25.0% |
| !!! | TTTTATCCTTAGTTTTTGGT+GGG | + | chr6_1:1602669-1602688 | None:intergenic | 25.0% |
| !!! | TTTTTATCCTTAGTTTTTGG+TGG | + | chr6_1:1602670-1602689 | None:intergenic | 25.0% |
| ! | AAAAATAACAAAGGCTAAGT+AGG | - | chr6_1:1602685-1602704 | Msa0868120:intron | 25.0% |
| ! | GTTATGCTATTAAAAAGAGA+TGG | + | chr6_1:1603024-1603043 | None:intergenic | 25.0% |
| ! | TATTTAGCACAAATTCTCAT+CGG | + | chr6_1:1603046-1603065 | None:intergenic | 25.0% |
| ! | TAACGAAAATAGCATTCATA+TGG | + | chr6_1:1603113-1603132 | None:intergenic | 25.0% |
| ! | AAACAATAGAAGAGATTGAT+TGG | + | chr6_1:1603346-1603365 | None:intergenic | 25.0% |
| ! | TTAACAATACAATAGACAAG+TGG | + | chr6_1:1603438-1603457 | None:intergenic | 25.0% |
| !!! | TAATACCTTTAGTTCCTTTT+AGG | - | chr6_1:1603455-1603474 | Msa0868120:intron | 25.0% |
| ! | AAACAATGGAAACACAAATT+TGG | + | chr6_1:1603539-1603558 | None:intergenic | 25.0% |
| ! | AAATTTGTGTTTCCATTGTT+TGG | - | chr6_1:1603538-1603557 | Msa0868120:intron | 25.0% |
| !! | AAGAAAGTTTTCAAAAGCAA+GGG | + | chr6_1:1603686-1603705 | None:intergenic | 25.0% |
| !! | AAAGAAAGTTTTCAAAAGCA+AGG | + | chr6_1:1603687-1603706 | None:intergenic | 25.0% |
| ! | GAAAGTGATAATAAAGTGAA+AGG | + | chr6_1:1603957-1603976 | None:intergenic | 25.0% |
| !!! | AGATGATTGTTTTAGTTGTT+TGG | + | chr6_1:1603987-1604006 | None:intergenic | 25.0% |
| ! | GTATAAGGAAAGAATATTGA+AGG | + | chr6_1:1604042-1604061 | None:intergenic | 25.0% |
| ! | GAAATATACTTCAAAAAGTG+TGG | - | chr6_1:1604470-1604489 | Msa0868120:intron | 25.0% |
| !!! | AAAGATAGTGTTATTTGTGT+GGG | + | chr6_1:1604578-1604597 | None:intergenic | 25.0% |
| !!! | TTTGTTTGTTTCTAAGGAAA+GGG | + | chr6_1:1604678-1604697 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr6_1:1604868-1604887 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr6_1:1604903-1604922 | Msa0868120:intron | 25.0% |
| ! | AAATAAATATTTACACCCTC+CGG | + | chr6_1:1604925-1604944 | None:intergenic | 25.0% |
| ! | AAACAACGTATGATAAAACA+CGG | - | chr6_1:1605103-1605122 | Msa0868120:intron | 25.0% |
| !!! | TATGCATTCATGTTTTAGAT+TGG | - | chr6_1:1605218-1605237 | Msa0868120:CDS | 25.0% |
| GGTATGATAATCTAACATTG+AGG | - | chr6_1:1601448-1601467 | Msa0868120:intron | 30.0% | |
| TGATAATCTAACATTGAGGT+TGG | - | chr6_1:1601452-1601471 | Msa0868120:intron | 30.0% | |
| TTTGAGCCAGAATAATATCT+TGG | - | chr6_1:1601750-1601769 | Msa0868120:intron | 30.0% | |
| ! | GAGTGTTATTATGTTAGTCT+TGG | - | chr6_1:1601787-1601806 | Msa0868120:intron | 30.0% |
| AAACTTGATAAGGATAGGAA+AGG | - | chr6_1:1602045-1602064 | Msa0868120:intron | 30.0% | |
| CATTTATCGTATCATGTGTT+TGG | - | chr6_1:1602084-1602103 | Msa0868120:intron | 30.0% | |
| ! | ATCATCTTCCTTTTTCTTAG+GGG | - | chr6_1:1602258-1602277 | Msa0868120:intron | 30.0% |
| TTTGTGACAAATAGAAGAGA+TGG | - | chr6_1:1602525-1602544 | Msa0868120:intron | 30.0% | |
| AGTAGGATAGGATTAGAAAT+AGG | - | chr6_1:1602702-1602721 | Msa0868120:intron | 30.0% | |
| ! | AATGAGGATTAGCAACAATA+AGG | + | chr6_1:1602828-1602847 | None:intergenic | 30.0% |
| TTTCATAACATTTACAGTGG+AGG | - | chr6_1:1602928-1602947 | Msa0868120:intron | 30.0% | |
| !!! | GAATGCTATTTTCGTTAATC+TGG | - | chr6_1:1603116-1603135 | Msa0868120:intron | 30.0% |
| !!! | CGGAAAGTTTTTTTTGATGT+GGG | + | chr6_1:1603605-1603624 | None:intergenic | 30.0% |
| GATAGTAAGTAGAAAGTGAA+TGG | + | chr6_1:1604016-1604035 | None:intergenic | 30.0% | |
| ! | GTGAAAGGTAAGAAAGTATA+AGG | + | chr6_1:1604057-1604076 | None:intergenic | 30.0% |
| TTCTTACCTTTCACTTTCTT+TGG | - | chr6_1:1604063-1604082 | Msa0868120:intron | 30.0% | |
| ATCTTTCCTCTTACTTTCTT+TGG | + | chr6_1:1604124-1604143 | None:intergenic | 30.0% | |
| GTAAGAGGAAAGATTGTTAA+AGG | - | chr6_1:1604145-1604164 | Msa0868120:intron | 30.0% | |
| ! | GTTAAAGGAAAGAAAGTATG+AGG | - | chr6_1:1604160-1604179 | Msa0868120:intron | 30.0% |
| !! | AGATGATTTGTTAGGTTGTT+TGG | - | chr6_1:1604200-1604219 | Msa0868120:intron | 30.0% |
| ATAGAACAATGGTAGAACAA+TGG | - | chr6_1:1604385-1604404 | Msa0868120:intron | 30.0% | |
| TATTGATGAAAATGCATGTG+TGG | - | chr6_1:1604440-1604459 | Msa0868120:intron | 30.0% | |
| !! | GAAAGATAGTGTTATTTGTG+TGG | + | chr6_1:1604579-1604598 | None:intergenic | 30.0% |
| TAAGTATTCTTTCCACAGTT+TGG | + | chr6_1:1604618-1604637 | None:intergenic | 30.0% | |
| !! | GTTTGTTTGTTTCTAAGGAA+AGG | + | chr6_1:1604679-1604698 | None:intergenic | 30.0% |
| !! | TAAGGGTTTGTTTGTTTCTA+AGG | + | chr6_1:1604684-1604703 | None:intergenic | 30.0% |
| TTAGAAACAAACAAACCCTT+AGG | - | chr6_1:1604683-1604702 | Msa0868120:intron | 30.0% | |
| !! | GTGATTTGGTCAAAATGAAA+AGG | - | chr6_1:1605180-1605199 | Msa0868120:CDS | 30.0% |
| AGATTATCATACCTAGTCAC+TGG | + | chr6_1:1601441-1601460 | None:intergenic | 35.0% | |
| TTTCTGATGCATCAATCTGA+GGG | - | chr6_1:1601510-1601529 | Msa0868120:intron | 35.0% | |
| ACAACATATGTGTGCTTTGA+AGG | - | chr6_1:1601635-1601654 | Msa0868120:intron | 35.0% | |
| !! | TATTATTCTGGCTCAAACTC+AGG | + | chr6_1:1601747-1601766 | None:intergenic | 35.0% |
| GTCGAACCAAGATATTATTC+TGG | + | chr6_1:1601759-1601778 | None:intergenic | 35.0% | |
| ! | TATCTTGGTTCGACTTATAG+TGG | - | chr6_1:1601765-1601784 | Msa0868120:intron | 35.0% |
| !! | ACATAAAACAAGCGCTGAAT+GGG | - | chr6_1:1601820-1601839 | Msa0868120:intron | 35.0% |
| TCTAACTTAGCTTCTTGAGA+AGG | + | chr6_1:1601949-1601968 | None:intergenic | 35.0% | |
| TGAAAAGAGATGAAACAGGT+TGG | + | chr6_1:1602408-1602427 | None:intergenic | 35.0% | |
| AAGTGATTGTAGGGTGAAAT+TGG | - | chr6_1:1602495-1602514 | Msa0868120:intron | 35.0% | |
| AGTGATTGTAGGGTGAAATT+GGG | - | chr6_1:1602496-1602515 | Msa0868120:intron | 35.0% | |
| TGTTGAAGAGTTATGGAAGA+AGG | - | chr6_1:1602548-1602567 | Msa0868120:intron | 35.0% | |
| AACATGAGCAATGAATTGAG+AGG | - | chr6_1:1602599-1602618 | Msa0868120:intron | 35.0% | |
| ACATGAGCAATGAATTGAGA+GGG | - | chr6_1:1602600-1602619 | Msa0868120:intron | 35.0% | |
| TAACAAAGGCTAAGTAGGAT+AGG | - | chr6_1:1602690-1602709 | Msa0868120:intron | 35.0% | |
| ACCAAACAGATGATTGAAAC+AGG | - | chr6_1:1602751-1602770 | Msa0868120:intron | 35.0% | |
| TCCTGTTTCAATCATCTGTT+TGG | + | chr6_1:1602755-1602774 | None:intergenic | 35.0% | |
| TAACGTGCTCTTGAATGTAA+GGG | + | chr6_1:1602962-1602981 | None:intergenic | 35.0% | |
| TTAACGTGCTCTTGAATGTA+AGG | + | chr6_1:1602963-1602982 | None:intergenic | 35.0% | |
| !! | TCAAGAGCACGTTAACTTTT+AGG | - | chr6_1:1602968-1602987 | Msa0868120:intron | 35.0% |
| !! | CAAGAGCACGTTAACTTTTA+GGG | - | chr6_1:1602969-1602988 | Msa0868120:intron | 35.0% |
| GGATGTTAATTCTTGTCTTC+AGG | - | chr6_1:1603191-1603210 | Msa0868120:intron | 35.0% | |
| TTGTCTTCAGGTAATCTGAT+TGG | - | chr6_1:1603203-1603222 | Msa0868120:intron | 35.0% | |
| !! | GTAATCTGATTGGCTTGTAT+CGG | - | chr6_1:1603213-1603232 | Msa0868120:intron | 35.0% |
| !! | ACCACGAATAGAGTTTTATG+CGG | + | chr6_1:1603307-1603326 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGTATAACTCCT+TGG | - | chr6_1:1603370-1603389 | Msa0868120:intron | 35.0% |
| GTATAACTCCTTGGATTGTT+TGG | - | chr6_1:1603379-1603398 | Msa0868120:intron | 35.0% | |
| CAATGCCTAAAAGGAACTAA+AGG | + | chr6_1:1603463-1603482 | None:intergenic | 35.0% | |
| !! | AGTTCCTTTTAGGCATTGTT+TGG | - | chr6_1:1603465-1603484 | Msa0868120:intron | 35.0% |
| AGAACCAAACAATGCCTAAA+AGG | + | chr6_1:1603472-1603491 | None:intergenic | 35.0% | |
| !! | TTTAGGCATTGTTTGGTTCT+AGG | - | chr6_1:1603472-1603491 | Msa0868120:intron | 35.0% |
| !! | TTAGGCATTGTTTGGTTCTA+GGG | - | chr6_1:1603473-1603492 | Msa0868120:intron | 35.0% |
| AAGGTGAATGGAAAGAAAGT+AGG | - | chr6_1:1603496-1603515 | Msa0868120:intron | 35.0% | |
| TGAATGGAAAGAAAGTAGGA+AGG | - | chr6_1:1603500-1603519 | Msa0868120:intron | 35.0% | |
| !! | AGAGGAAAGAAAGTGTTCTT+TGG | - | chr6_1:1603573-1603592 | Msa0868120:intron | 35.0% |
| !! | GAGGAAAGAAAGTGTTCTTT+GGG | - | chr6_1:1603574-1603593 | Msa0868120:intron | 35.0% |
| !! | AAAGAAAGTGTTCTTTGGGT+GGG | - | chr6_1:1603578-1603597 | Msa0868120:intron | 35.0% |
| !!! | GCGGAAAGTTTTTTTTGATG+TGG | + | chr6_1:1603606-1603625 | None:intergenic | 35.0% |
| GACGTCAGAAGAAAATCAAT+TGG | + | chr6_1:1603733-1603752 | None:intergenic | 35.0% | |
| !!! | AAAGCCTTAGTTTTGTTACC+AGG | + | chr6_1:1603786-1603805 | None:intergenic | 35.0% |
| GTAAGAGGAAAGATTGTAAG+AGG | - | chr6_1:1604130-1604149 | Msa0868120:intron | 35.0% | |
| ! | GAAAGTATGAGGTAAGTGAA+TGG | - | chr6_1:1604171-1604190 | Msa0868120:intron | 35.0% |
| !! | GGAAAGTGAGATGATTTGTT+AGG | - | chr6_1:1604192-1604211 | Msa0868120:intron | 35.0% |
| GAAAGTGATAAGAAAGTGAG+TGG | - | chr6_1:1604230-1604249 | Msa0868120:intron | 35.0% | |
| TATTCTTTCCACAGTTTGGA+TGG | + | chr6_1:1604614-1604633 | None:intergenic | 35.0% | |
| !! | TTGTTTCTAAGGAAAGGGTA+TGG | + | chr6_1:1604673-1604692 | None:intergenic | 35.0% |
| TGCTTATAATAGTGATCGGA+GGG | + | chr6_1:1604790-1604809 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | + | chr6_1:1604791-1604810 | None:intergenic | 35.0% | |
| AACGTATGATAAAACACGGA+TGG | - | chr6_1:1605107-1605126 | Msa0868120:intron | 35.0% | |
| ACGTATGATAAAACACGGAT+GGG | - | chr6_1:1605108-1605127 | Msa0868120:intron | 35.0% | |
| TTGATGAAGAACCAGTGACT+AGG | - | chr6_1:1601427-1601446 | Msa0868120:intron | 40.0% | |
| CTTTCTGATGCATCAATCTG+AGG | - | chr6_1:1601509-1601528 | Msa0868120:intron | 40.0% | |
| TTCTGATGCATCAATCTGAG+GGG | - | chr6_1:1601511-1601530 | Msa0868120:intron | 40.0% | |
| TGGAGTTGAAAGAAGCTATG+AGG | - | chr6_1:1601538-1601557 | Msa0868120:intron | 40.0% | |
| AAGAAGCTATGAGGAAAGCT+AGG | - | chr6_1:1601547-1601566 | Msa0868120:intron | 40.0% | |
| AGAAGCTATGAGGAAAGCTA+GGG | - | chr6_1:1601548-1601567 | Msa0868120:intron | 40.0% | |
| TCATAGATGGATGTCATCGA+TGG | + | chr6_1:1601579-1601598 | None:intergenic | 40.0% | |
| ! | TCCATCTATGAGCGTTGTAA+TGG | - | chr6_1:1601588-1601607 | Msa0868120:intron | 40.0% |
| ! | CCATCTATGAGCGTTGTAAT+GGG | - | chr6_1:1601589-1601608 | Msa0868120:intron | 40.0% |
| ! | AATGATGGAGAGACAAGCAA+AGG | - | chr6_1:1601689-1601708 | Msa0868120:intron | 40.0% |
| !! | TATGTTAGTCTTGGCAAGCT+AGG | - | chr6_1:1601796-1601815 | Msa0868120:intron | 40.0% |
| !! | ATGTTAGTCTTGGCAAGCTA+GGG | - | chr6_1:1601797-1601816 | Msa0868120:intron | 40.0% |
| !! | GACATAAAACAAGCGCTGAA+TGG | - | chr6_1:1601819-1601838 | Msa0868120:intron | 40.0% |
| ATCCTATCTTGTGCACCAAA+CGG | + | chr6_1:1602006-1602025 | None:intergenic | 40.0% | |
| ! | GAGATGGTGTTGAAGAGTTA+TGG | - | chr6_1:1602541-1602560 | Msa0868120:intron | 40.0% |
| CTCTAACCCACCAAAAACTA+AGG | - | chr6_1:1602660-1602679 | Msa0868120:intron | 40.0% | |
| TTCTTATCGTGTGCACCAAA+CGG | - | chr6_1:1602800-1602819 | Msa0868120:intron | 40.0% | |
| TTCGTTAATCTGGTCGACAT+TGG | - | chr6_1:1603126-1603145 | Msa0868120:intron | 40.0% | |
| GGTGATTAAGCTTCGCAATT+AGG | - | chr6_1:1603147-1603166 | Msa0868120:intron | 40.0% | |
| TAGGTCGTGGACTTATGTTT+AGG | - | chr6_1:1603166-1603185 | Msa0868120:intron | 40.0% | |
| TCGTGGACTTATGTTTAGGA+AGG | - | chr6_1:1603170-1603189 | Msa0868120:intron | 40.0% | |
| !! | TTGGCTTGTATCGGATTTAC+TGG | - | chr6_1:1603222-1603241 | Msa0868120:intron | 40.0% |
| ACCGCATAAAACTCTATTCG+TGG | - | chr6_1:1603303-1603322 | Msa0868120:intron | 40.0% | |
| GCATAAAACTCTATTCGTGG+TGG | - | chr6_1:1603306-1603325 | Msa0868120:intron | 40.0% | |
| TAAAACTCTATTCGTGGTGG+TGG | - | chr6_1:1603309-1603328 | Msa0868120:intron | 40.0% | |
| CGACTAAACCAAACAATCCA+AGG | + | chr6_1:1603390-1603409 | None:intergenic | 40.0% | |
| !! | GAAAGAAAGTGTTCTTTGGG+TGG | - | chr6_1:1603577-1603596 | Msa0868120:intron | 40.0% |
| ATCAACCTTTCTTCGCACTT+GGG | + | chr6_1:1603630-1603649 | None:intergenic | 40.0% | |
| ! | GTTGATCAGCACATCCATTT+TGG | - | chr6_1:1603644-1603663 | Msa0868120:intron | 40.0% |
| !! | GCTTGTTATCATATCCATCC+TGG | - | chr6_1:1603765-1603784 | Msa0868120:intron | 40.0% |
| !!! | CCTTAGTTTTGTTACCAGGA+TGG | + | chr6_1:1603782-1603801 | None:intergenic | 40.0% |
| CCATCCTGGTAACAAAACTA+AGG | - | chr6_1:1603779-1603798 | Msa0868120:intron | 40.0% | |
| GGACAACCAAAGAAAGTGAA+AGG | + | chr6_1:1604072-1604091 | None:intergenic | 40.0% | |
| GTTGTCCAAACAAAGCCTTA+GGG | - | chr6_1:1604085-1604104 | Msa0868120:intron | 40.0% | |
| GGATCACCAAAGAAAGTAAG+AGG | - | chr6_1:1604115-1604134 | Msa0868120:intron | 40.0% | |
| ! | TATCATGCGAAGAAAGCACA+CGG | + | chr6_1:1604530-1604549 | None:intergenic | 40.0% |
| TGTGCTTTCTTCGCATGATA+GGG | - | chr6_1:1604530-1604549 | Msa0868120:intron | 40.0% | |
| ACACTATCTTTCCACTCTGA+CGG | - | chr6_1:1604587-1604606 | Msa0868120:intron | 40.0% | |
| AAACTTCCCTTTGATGCACA+AGG | + | chr6_1:1604713-1604732 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6_1:1604906-1604925 | Msa0868120:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr6_1:1604907-1604926 | Msa0868120:intron | 40.0% | |
| CGTATGATAAAACACGGATG+GGG | - | chr6_1:1605109-1605128 | Msa0868120:intron | 40.0% | |
| !!! | CCCTTGTTTTCTTCACAGGT+GGG | + | chr6_1:1601404-1601423 | None:intergenic | 45.0% |
| CCCACCTGTGAAGAAAACAA+GGG | - | chr6_1:1601401-1601420 | Msa0868120:intron | 45.0% | |
| !!! | TCCCTTGTTTTCTTCACAGG+TGG | + | chr6_1:1601405-1601424 | None:intergenic | 45.0% |
| ACCTGTGAAGAAAACAAGGG+AGG | - | chr6_1:1601404-1601423 | Msa0868120:intron | 45.0% | |
| !!! | ACCTCCCTTGTTTTCTTCAC+AGG | + | chr6_1:1601408-1601427 | None:intergenic | 45.0% |
| ATTGAGGTTGGCGAATGATG+TGG | - | chr6_1:1601464-1601483 | Msa0868120:intron | 45.0% | |
| TCTGATGCATCAATCTGAGG+GGG | - | chr6_1:1601512-1601531 | Msa0868120:intron | 45.0% | |
| CCCATTACAACGCTCATAGA+TGG | + | chr6_1:1601592-1601611 | None:intergenic | 45.0% | |
| AGAGACAAGCAAAGGACAAC+CGG | - | chr6_1:1601697-1601716 | Msa0868120:intron | 45.0% | |
| AAAGGACAACCGGGAACTAT+TGG | - | chr6_1:1601707-1601726 | Msa0868120:intron | 45.0% | |
| TGAGTAGCTCCAATAGTTCC+CGG | + | chr6_1:1601719-1601738 | None:intergenic | 45.0% | |
| !! | TAAAACAAGCGCTGAATGGG+AGG | - | chr6_1:1601823-1601842 | Msa0868120:intron | 45.0% |
| CCAAACGGACCGTAAAAGAA+AGG | + | chr6_1:1601991-1602010 | None:intergenic | 45.0% | |
| ! | CCTTTCTTTTACGGTCCGTT+TGG | - | chr6_1:1601988-1602007 | Msa0868120:intron | 45.0% |
| AGACGACACCCCTAAGAAAA+AGG | + | chr6_1:1602269-1602288 | None:intergenic | 45.0% | |
| TGGAAGAAGGTAGATGTCGA+TGG | - | chr6_1:1602561-1602580 | Msa0868120:intron | 45.0% | |
| AGAAGGTAGATGTCGATGGA+TGG | - | chr6_1:1602565-1602584 | Msa0868120:intron | 45.0% | |
| !! | GTTTGGTGTGTCGATAGGAA+AGG | + | chr6_1:1602738-1602757 | None:intergenic | 45.0% |
| !! | CATCTGTTTGGTGTGTCGAT+AGG | + | chr6_1:1602743-1602762 | None:intergenic | 45.0% |
| TCTTATCGTGTGCACCAAAC+GGG | - | chr6_1:1602801-1602820 | Msa0868120:intron | 45.0% | |
| TAAGCTTCGCAATTAGGTCG+TGG | - | chr6_1:1603153-1603172 | Msa0868120:intron | 45.0% | |
| !! | GCATTGTTTGGTTCTAGGGA+AGG | - | chr6_1:1603477-1603496 | Msa0868120:intron | 45.0% |
| !! | TTGGTTCTAGGGAAGGTGAA+TGG | - | chr6_1:1603484-1603503 | Msa0868120:intron | 45.0% |
| CTGACAGTGCAACCAAACAA+TGG | + | chr6_1:1603553-1603572 | None:intergenic | 45.0% | |
| GATCAACCTTTCTTCGCACT+TGG | + | chr6_1:1603631-1603650 | None:intergenic | 45.0% | |
| GGTTGTCCAAACAAAGCCTT+AGG | - | chr6_1:1604084-1604103 | Msa0868120:intron | 45.0% | |
| !! | ACACACCCTAAGGCTTTGTT+TGG | + | chr6_1:1604093-1604112 | None:intergenic | 45.0% |
| ACAAAGCCTTAGGGTGTGTT+TGG | - | chr6_1:1604094-1604113 | Msa0868120:intron | 45.0% | |
| TTGCTTCTGACGTCATCGTA+AGG | + | chr6_1:1604418-1604437 | None:intergenic | 45.0% | |
| GTGTGCTTTCTTCGCATGAT+AGG | - | chr6_1:1604529-1604548 | Msa0868120:intron | 45.0% | |
| GTGCTTTCTTCGCATGATAG+GGG | - | chr6_1:1604531-1604550 | Msa0868120:intron | 45.0% | |
| TATTTGTGTGGGTCTCACGT+TGG | + | chr6_1:1604567-1604586 | None:intergenic | 45.0% | |
| !!! | TAAAATTTTATATAATAATG+AGG | + | chr6_1:1602844-1602863 | None:intergenic | 5.0% |
| !!! | ATATATATGTATATTTTTTT+TGG | + | chr6_1:1603882-1603901 | None:intergenic | 5.0% |
| !!! | TATATATTCATTTTAATATA+AGG | - | chr6_1:1603895-1603914 | Msa0868120:intron | 5.0% |
| GCCCACCTGTGAAGAAAACA+AGG | - | chr6_1:1601400-1601419 | Msa0868120:intron | 50.0% | |
| GCATCAATCTGAGGGGGATA+TGG | - | chr6_1:1601518-1601537 | Msa0868120:intron | 50.0% | |
| AGCTATGAGGAAAGCTAGGG+TGG | - | chr6_1:1601551-1601570 | Msa0868120:intron | 50.0% | |
| !! | AGCGTTGTAATGGGCAGAGA+GGG | - | chr6_1:1601598-1601617 | Msa0868120:intron | 50.0% |
| ! | TAATGGGCAGAGAGGGATGT+TGG | - | chr6_1:1601605-1601624 | Msa0868120:intron | 50.0% |
| GAGACAAGCAAAGGACAACC+GGG | - | chr6_1:1601698-1601717 | Msa0868120:intron | 50.0% | |
| !! | GTCCGTTTGGTGCACAAGAT+AGG | - | chr6_1:1602001-1602020 | Msa0868120:intron | 50.0% |
| GGTGCACACGATAAGAAGAC+AGG | + | chr6_1:1602797-1602816 | None:intergenic | 50.0% | |
| CTTATCGTGTGCACCAAACG+GGG | - | chr6_1:1602802-1602821 | Msa0868120:intron | 50.0% | |
| AGCAACAATAAGGCCCCGTT+TGG | + | chr6_1:1602818-1602837 | None:intergenic | 50.0% | |
| GTTTGGTTGCACTGTCAGAG+AGG | - | chr6_1:1603555-1603574 | Msa0868120:intron | 50.0% | |
| GGTGATCCAAACACACCCTA+AGG | + | chr6_1:1604103-1604122 | None:intergenic | 50.0% | |
| ! | ATGCGAAGAAAGCACACGGA+AGG | + | chr6_1:1604526-1604545 | None:intergenic | 50.0% |
| TCTTCGCATGATAGGGGAGA+AGG | - | chr6_1:1604537-1604556 | Msa0868120:intron | 50.0% | |
| GGTATGGACAGAAAGCAGCA+AGG | + | chr6_1:1604657-1604676 | None:intergenic | 50.0% | |
| GCTTAGTGATGCGCCACCTA+AGG | - | chr6_1:1601368-1601387 | Msa0868120:intron | 55.0% | |
| !! | GAGCGTTGTAATGGGCAGAG+AGG | - | chr6_1:1601597-1601616 | Msa0868120:intron | 55.0% |
| CCTTTCTTCGCACTTGGGAG+CGG | + | chr6_1:1603625-1603644 | None:intergenic | 55.0% | |
| GTTTGGATGGTCCGTCAGAG+TGG | + | chr6_1:1604601-1604620 | None:intergenic | 55.0% | |
| ! | CTGACGGACCATCCAAACTG+TGG | - | chr6_1:1604603-1604622 | Msa0868120:intron | 55.0% |
| GATGCACAAGGCACGCCTAA+GGG | + | chr6_1:1604701-1604720 | None:intergenic | 55.0% | |
| TGATGCACAAGGCACGCCTA+AGG | + | chr6_1:1604702-1604721 | None:intergenic | 55.0% | |
| AGGCGTGCCTTGTGCATCAA+AGG | - | chr6_1:1604703-1604722 | Msa0868120:intron | 55.0% | |
| GGCGTGCCTTGTGCATCAAA+GGG | - | chr6_1:1604704-1604723 | Msa0868120:intron | 55.0% | |
| ! | ATGCGCCACCTAAGGCACCT+AGG | - | chr6_1:1601376-1601395 | Msa0868120:intron | 60.0% |
| TTCTTCACAGGTGGGCGCCT+AGG | + | chr6_1:1601396-1601415 | None:intergenic | 60.0% | |
| CCGCTCCCAAGTGCGAAGAA+AGG | - | chr6_1:1603622-1603641 | Msa0868120:intron | 60.0% | |
| GGGCGCCTAGGTGCCTTAGG+TGG | + | chr6_1:1601384-1601403 | None:intergenic | 70.0% | |
| GGTGGGCGCCTAGGTGCCTT+AGG | + | chr6_1:1601387-1601406 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1601345 | 1605397 | 1601345 | ID=Msa0868120;Name=Msa0868120 |
| chr6_1 | mRNA | 1601345 | 1605397 | 1601345 | ID=Msa0868120-mRNA-1;Parent=Msa0868120;Name=Msa0868120-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.5|0|0|2|0|85 |
| chr6_1 | exon | 1605173 | 1605397 | 1605173 | ID=Msa0868120-mRNA-1:exon:444;Parent=Msa0868120-mRNA-1 |
| chr6_1 | exon | 1601345 | 1601377 | 1601345 | ID=Msa0868120-mRNA-1:exon:443;Parent=Msa0868120-mRNA-1 |
| chr6_1 | CDS | 1605173 | 1605397 | 1605173 | ID=Msa0868120-mRNA-1:cds;Parent=Msa0868120-mRNA-1 |
| chr6_1 | CDS | 1601345 | 1601377 | 1601345 | ID=Msa0868120-mRNA-1:cds;Parent=Msa0868120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
