Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770570 | AES75046.2 | 51.724 | 87 | 29 | 1 | 25 | 98 | 137 | 223 | 2.16e-16 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770570 | G7KNM3 | 51.724 | 87 | 29 | 1 | 25 | 98 | 137 | 223 | 1.03e-16 | 89.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766630 | Msa0770570 | 0.818114 | 2.320595e-52 | -8.615850e-47 |
| Msa0770570 | Msa0868120 | 0.813420 | 2.583482e-51 | -8.615850e-47 |
| Msa0292930 | Msa0770570 | 0.800540 | 1.373789e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770570 | MtrunA17_Chr5g0420391 | 43.210 | 81 | 45 | 1 | 143 | 222 | 3 | 83 | 2.40e-15 | 70.1 |
| Msa0770570 | MtrunA17_Chr1g0174091 | 38.636 | 88 | 53 | 1 | 143 | 229 | 3 | 90 | 3.14e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGCTTGAGAGAAGGAAT+TGG | 0.323230 | 5_2:-41558613 | Msa0770570:CDS |
| ACAACATATGTGTGCTTTGA+AGG | 0.372993 | 5_2:-41557727 | Msa0770570:CDS |
| GATCCTTATCCTTCTTCTCT+TGG | 0.373483 | 5_2:+41558522 | None:intergenic |
| CCCATTACAACGCTCATAGA+TGG | 0.379962 | 5_2:+41557773 | None:intergenic |
| TCAAGCTCTTCTTTAATATC+CGG | 0.382072 | 5_2:+41558626 | None:intergenic |
| GTCGAACCAAGATATTATTC+TGG | 0.391280 | 5_2:+41557606 | None:intergenic |
| GGTGGGTGCCTAGGTGCCTT+AGG | 0.392878 | 5_2:+41557978 | None:intergenic |
| AGAGACAAGCAAAGGACAAC+CGG | 0.393161 | 5_2:-41557665 | Msa0770570:CDS |
| AATTCTAGAGTTTGAAATGA+TGG | 0.403571 | 5_2:-41557688 | Msa0770570:CDS |
| AGGAATTGGATTAAGTTGAA+TGG | 0.408106 | 5_2:-41558599 | Msa0770570:CDS |
| GAAATTGAATAATTATGAAA+AGG | 0.413821 | 5_2:-41558763 | None:intergenic |
| AAATTGAATAATTATGAAAA+GGG | 0.414893 | 5_2:-41558762 | None:intergenic |
| TTCTTCACAGGTGGGTGCCT+AGG | 0.416466 | 5_2:+41557969 | None:intergenic |
| GATGCATGTGTTAATAGAGT+AGG | 0.418133 | 5_2:-41558071 | Msa0770570:CDS |
| CCATCTATGAGCGTTGTAAT+GGG | 0.420853 | 5_2:-41557773 | Msa0770570:CDS |
| TCCATCTATGAGCGTTGTAA+TGG | 0.424251 | 5_2:-41557774 | Msa0770570:CDS |
| AAAGGACAACCGGGAACTAT+TGG | 0.424993 | 5_2:-41557655 | Msa0770570:CDS |
| TGAGTAGCTCCAATAGTTCC+CGG | 0.436287 | 5_2:+41557646 | None:intergenic |
| TATTATTCTGGCTCAAACTC+AGG | 0.439961 | 5_2:+41557618 | None:intergenic |
| TAATGGGCAGAGAGGGATGT+TGG | 0.454262 | 5_2:-41557757 | Msa0770570:CDS |
| CAAGCTCTTCTTTAATATCC+GGG | 0.459526 | 5_2:+41558627 | None:intergenic |
| AAGAAGCTATGAGGAAAGCT+AGG | 0.482549 | 5_2:-41557815 | Msa0770570:CDS |
| TCTTCTTTAATATCCGGGAT+TGG | 0.494431 | 5_2:+41558632 | None:intergenic |
| CTTCCAAGAGAAGAAGGATA+AGG | 0.498910 | 5_2:-41558525 | Msa0770570:CDS |
| TTGTAGCTTCCAAGAGAAGA+AGG | 0.510823 | 5_2:-41558531 | Msa0770570:intron |
| AGATTATCATACCTAGTCAC+TGG | 0.529590 | 5_2:+41557924 | None:intergenic |
| TGATAATCTAACATTGAGGT+TGG | 0.535686 | 5_2:-41557910 | Msa0770570:CDS |
| GCTTAGTGATGCGCCACCTA+AGG | 0.536777 | 5_2:-41557994 | Msa0770570:CDS |
| TTAAAGAAGAGCTTGAGAGA+AGG | 0.542683 | 5_2:-41558619 | Msa0770570:CDS |
| CTTTCTGATGCATCAATCTG+AGG | 0.547707 | 5_2:-41557853 | Msa0770570:CDS |
| ATGCATGTGTTAATAGAGTA+GGG | 0.548202 | 5_2:-41558070 | Msa0770570:CDS |
| TGGAGTTGAAAGAAGCTATG+AGG | 0.551746 | 5_2:-41557824 | Msa0770570:CDS |
| AGCGTTGTAATGGGCAGAGA+GGG | 0.556475 | 5_2:-41557764 | Msa0770570:CDS |
| CCGCGTACAAAAGACACATA+AGG | 0.560756 | 5_2:+41558500 | None:intergenic |
| TTTCTGATGCATCAATCTGA+GGG | 0.571150 | 5_2:-41557852 | Msa0770570:CDS |
| AAGGTGCGACTCAAAAGAAG+AGG | 0.579443 | 5_2:-41558715 | Msa0770570:CDS |
| AATCACAAGTCTTGAAGACA+TGG | 0.580073 | 5_2:-41558378 | Msa0770570:CDS |
| ATTATGAAAAGGGGAAGAGA+AGG | 0.585734 | 5_2:-41558752 | Msa0770570:CDS |
| ACCCACCTGTGAAGAAAACA+AGG | 0.591198 | 5_2:-41557962 | Msa0770570:CDS |
| AATTGAATAATTATGAAAAG+GGG | 0.599544 | 5_2:-41558761 | None:intergenic |
| AGCTATGAGGAAAGCTAGGG+TGG | 0.605467 | 5_2:-41557811 | Msa0770570:CDS |
| TTGATGAAGAACCAGTGACT+AGG | 0.608687 | 5_2:-41557935 | Msa0770570:CDS |
| GAGACAAGCAAAGGACAACC+GGG | 0.614746 | 5_2:-41557664 | Msa0770570:CDS |
| GCTTCAATTCCACACACTAG+TGG | 0.618667 | 5_2:+41558422 | None:intergenic |
| TGAAATGGATGTCAAGTGGT+TGG | 0.619229 | 5_2:-41558021 | Msa0770570:CDS |
| GGGTGCCTAGGTGCCTTAGG+TGG | 0.621286 | 5_2:+41557981 | None:intergenic |
| TGGTGTCGGTGTTTCAAGCA+TGG | 0.631382 | 5_2:+41558442 | None:intergenic |
| TCATAGATGGATGTCATCGA+TGG | 0.634553 | 5_2:+41557786 | None:intergenic |
| AGAAGCTATGAGGAAAGCTA+GGG | 0.635718 | 5_2:-41557814 | Msa0770570:CDS |
| ATTCCACACACTAGTGGTGT+CGG | 0.644107 | 5_2:+41558428 | None:intergenic |
| GGTATGATAATCTAACATTG+AGG | 0.645495 | 5_2:-41557914 | Msa0770570:CDS |
| GAGCGTTGTAATGGGCAGAG+AGG | 0.655474 | 5_2:-41557765 | Msa0770570:CDS |
| ATGCGCCACCTAAGGCACCT+AGG | 0.657664 | 5_2:-41557986 | Msa0770570:CDS |
| TCTGATGCATCAATCTGAGG+GGG | 0.659005 | 5_2:-41557850 | Msa0770570:CDS |
| ACACCGACACCACTAGTGTG+TGG | 0.665839 | 5_2:-41558431 | Msa0770570:CDS |
| AATGATGGAGAGACAAGCAA+AGG | 0.674880 | 5_2:-41557673 | Msa0770570:CDS |
| ACCTGTGAAGAAAACAAGGG+AGG | 0.685381 | 5_2:-41557958 | Msa0770570:CDS |
| TTCTGATGCATCAATCTGAG+GGG | 0.687616 | 5_2:-41557851 | Msa0770570:CDS |
| ATTGAGGTTGGCGAATGATG+TGG | 0.692893 | 5_2:-41557898 | Msa0770570:CDS |
| TCGCTGAAATGGATGTCAAG+TGG | 0.704450 | 5_2:-41558025 | Msa0770570:CDS |
| CCCACCTGTGAAGAAAACAA+GGG | 0.785147 | 5_2:-41557961 | Msa0770570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTATAAGAAAATAAGA+AGG | - | chr5_2:41558015-41558034 | Msa0770570:CDS | 15.0% |
| !! | AAAGTTATAAGAAAATAAGA+AGG | - | chr5_2:41558015-41558034 | Msa0770570:CDS | 15.0% |
| !!! | GAAGGTCATTATATTTTTAA+AGG | - | chr5_2:41557635-41557654 | Msa0770570:CDS | 20.0% |
| !! | AATTTCAAGCTAAATTTAGT+AGG | + | chr5_2:41558091-41558110 | None:intergenic | 20.0% |
| !!! | AAATTCATTTGAGTTTTGTT+TGG | - | chr5_2:41558171-41558190 | Msa0770570:intron | 20.0% |
| !! | CATTATTGCTTATATTGTTA+CGG | + | chr5_2:41558203-41558222 | None:intergenic | 20.0% |
| !! | AATATAAGCAATAATGAATG+TGG | - | chr5_2:41558207-41558226 | Msa0770570:intron | 20.0% |
| !!! | GAAGGTCATTATATTTTTAA+AGG | - | chr5_2:41557635-41557654 | Msa0770570:CDS | 20.0% |
| !! | AATTTCAAGCTAAATTTAGT+AGG | + | chr5_2:41558091-41558110 | None:intergenic | 20.0% |
| !!! | AAATTCATTTGAGTTTTGTT+TGG | - | chr5_2:41558171-41558190 | Msa0770570:intron | 20.0% |
| !! | CATTATTGCTTATATTGTTA+CGG | + | chr5_2:41558203-41558222 | None:intergenic | 20.0% |
| !! | AATATAAGCAATAATGAATG+TGG | - | chr5_2:41558207-41558226 | Msa0770570:intron | 20.0% |
| !! | ATTCAAACACTTAGATTTTG+TGG | - | chr5_2:41557685-41557704 | Msa0770570:CDS | 25.0% |
| !!! | AATTCTAGAGTTTGAAATGA+TGG | - | chr5_2:41558681-41558700 | Msa0770570:CDS | 25.0% |
| !! | ATTCAAACACTTAGATTTTG+TGG | - | chr5_2:41557685-41557704 | Msa0770570:CDS | 25.0% |
| !!! | AATTCTAGAGTTTGAAATGA+TGG | - | chr5_2:41558681-41558700 | Msa0770570:CDS | 25.0% |
| ! | ACTTAGATTTTGTGGAAGAA+AGG | - | chr5_2:41557693-41557712 | Msa0770570:CDS | 30.0% |
| ! | CTTAGATTTTGTGGAAGAAA+GGG | - | chr5_2:41557694-41557713 | Msa0770570:CDS | 30.0% |
| TCAAGCTCTTCTTTAATATC+CGG | + | chr5_2:41557746-41557765 | None:intergenic | 30.0% | |
| !! | AGGAATTGGATTAAGTTGAA+TGG | - | chr5_2:41557770-41557789 | Msa0770570:CDS | 30.0% |
| GAAAATAAGAAGGAACTTTG+TGG | - | chr5_2:41558025-41558044 | Msa0770570:CDS | 30.0% | |
| AATTCATGAAGCCTATAACA+AGG | - | chr5_2:41558107-41558126 | Msa0770570:intron | 30.0% | |
| ATTCATGAAGCCTATAACAA+GGG | - | chr5_2:41558108-41558127 | Msa0770570:intron | 30.0% | |
| ATAAGCAATAATGAATGTGG+AGG | - | chr5_2:41558210-41558229 | Msa0770570:intron | 30.0% | |
| !! | ATAAGGCATTGATAAGTGAA+GGG | + | chr5_2:41558273-41558292 | None:intergenic | 30.0% |
| ATGCATGTGTTAATAGAGTA+GGG | - | chr5_2:41558299-41558318 | Msa0770570:intron | 30.0% | |
| GGTATGATAATCTAACATTG+AGG | - | chr5_2:41558455-41558474 | Msa0770570:CDS | 30.0% | |
| TGATAATCTAACATTGAGGT+TGG | - | chr5_2:41558459-41558478 | Msa0770570:CDS | 30.0% | |
| ! | ACTTAGATTTTGTGGAAGAA+AGG | - | chr5_2:41557693-41557712 | Msa0770570:CDS | 30.0% |
| ! | CTTAGATTTTGTGGAAGAAA+GGG | - | chr5_2:41557694-41557713 | Msa0770570:CDS | 30.0% |
| TCAAGCTCTTCTTTAATATC+CGG | + | chr5_2:41557746-41557765 | None:intergenic | 30.0% | |
| !! | AGGAATTGGATTAAGTTGAA+TGG | - | chr5_2:41557770-41557789 | Msa0770570:CDS | 30.0% |
| GAAAATAAGAAGGAACTTTG+TGG | - | chr5_2:41558025-41558044 | Msa0770570:CDS | 30.0% | |
| AATTCATGAAGCCTATAACA+AGG | - | chr5_2:41558107-41558126 | Msa0770570:intron | 30.0% | |
| ATTCATGAAGCCTATAACAA+GGG | - | chr5_2:41558108-41558127 | Msa0770570:intron | 30.0% | |
| ATAAGCAATAATGAATGTGG+AGG | - | chr5_2:41558210-41558229 | Msa0770570:intron | 30.0% | |
| !! | ATAAGGCATTGATAAGTGAA+GGG | + | chr5_2:41558273-41558292 | None:intergenic | 30.0% |
| ATGCATGTGTTAATAGAGTA+GGG | - | chr5_2:41558299-41558318 | Msa0770570:intron | 30.0% | |
| GGTATGATAATCTAACATTG+AGG | - | chr5_2:41558455-41558474 | Msa0770570:CDS | 30.0% | |
| TGATAATCTAACATTGAGGT+TGG | - | chr5_2:41558459-41558478 | Msa0770570:CDS | 30.0% | |
| ACTTGAGAAAAATCCAATCC+CGG | - | chr5_2:41557724-41557743 | Msa0770570:CDS | 35.0% | |
| TCTTCTTTAATATCCGGGAT+TGG | + | chr5_2:41557740-41557759 | None:intergenic | 35.0% | |
| CAAGCTCTTCTTTAATATCC+GGG | + | chr5_2:41557745-41557764 | None:intergenic | 35.0% | |
| TTAAAGAAGAGCTTGAGAGA+AGG | - | chr5_2:41557750-41557769 | Msa0770570:CDS | 35.0% | |
| AATCACAAGTCTTGAAGACA+TGG | - | chr5_2:41557991-41558010 | Msa0770570:CDS | 35.0% | |
| TTCTAGTGTATGCACAACAA+AGG | + | chr5_2:41558143-41558162 | None:intergenic | 35.0% | |
| AATGTGGAGGATCATAGATA+AGG | - | chr5_2:41558223-41558242 | Msa0770570:intron | 35.0% | |
| !! | CATAAGGCATTGATAAGTGA+AGG | + | chr5_2:41558274-41558293 | None:intergenic | 35.0% |
| AACACATGCATCTCTACATA+AGG | + | chr5_2:41558290-41558309 | None:intergenic | 35.0% | |
| GATGCATGTGTTAATAGAGT+AGG | - | chr5_2:41558298-41558317 | Msa0770570:intron | 35.0% | |
| GTTGAAAAAAGTCGCTGAAA+TGG | - | chr5_2:41558333-41558352 | Msa0770570:intron | 35.0% | |
| AGATTATCATACCTAGTCAC+TGG | + | chr5_2:41558448-41558467 | None:intergenic | 35.0% | |
| TTTCTGATGCATCAATCTGA+GGG | - | chr5_2:41558517-41558536 | Msa0770570:CDS | 35.0% | |
| ACAACATATGTGTGCTTTGA+AGG | - | chr5_2:41558642-41558661 | Msa0770570:CDS | 35.0% | |
| ACTTGAGAAAAATCCAATCC+CGG | - | chr5_2:41557724-41557743 | Msa0770570:CDS | 35.0% | |
| TCTTCTTTAATATCCGGGAT+TGG | + | chr5_2:41557740-41557759 | None:intergenic | 35.0% | |
| CAAGCTCTTCTTTAATATCC+GGG | + | chr5_2:41557745-41557764 | None:intergenic | 35.0% | |
| TTAAAGAAGAGCTTGAGAGA+AGG | - | chr5_2:41557750-41557769 | Msa0770570:CDS | 35.0% | |
| AATCACAAGTCTTGAAGACA+TGG | - | chr5_2:41557991-41558010 | Msa0770570:CDS | 35.0% | |
| TTCTAGTGTATGCACAACAA+AGG | + | chr5_2:41558143-41558162 | None:intergenic | 35.0% | |
| AATGTGGAGGATCATAGATA+AGG | - | chr5_2:41558223-41558242 | Msa0770570:intron | 35.0% | |
| !! | CATAAGGCATTGATAAGTGA+AGG | + | chr5_2:41558274-41558293 | None:intergenic | 35.0% |
| AACACATGCATCTCTACATA+AGG | + | chr5_2:41558290-41558309 | None:intergenic | 35.0% | |
| GATGCATGTGTTAATAGAGT+AGG | - | chr5_2:41558298-41558317 | Msa0770570:intron | 35.0% | |
| GTTGAAAAAAGTCGCTGAAA+TGG | - | chr5_2:41558333-41558352 | Msa0770570:intron | 35.0% | |
| AGATTATCATACCTAGTCAC+TGG | + | chr5_2:41558448-41558467 | None:intergenic | 35.0% | |
| TTTCTGATGCATCAATCTGA+GGG | - | chr5_2:41558517-41558536 | Msa0770570:CDS | 35.0% | |
| ACAACATATGTGTGCTTTGA+AGG | - | chr5_2:41558642-41558661 | Msa0770570:CDS | 35.0% | |
| AAGAGCTTGAGAGAAGGAAT+TGG | - | chr5_2:41557756-41557775 | Msa0770570:CDS | 40.0% | |
| TTGTAGCTTCCAAGAGAAGA+AGG | - | chr5_2:41557838-41557857 | Msa0770570:CDS | 40.0% | |
| CTTCCAAGAGAAGAAGGATA+AGG | - | chr5_2:41557844-41557863 | Msa0770570:CDS | 40.0% | |
| GATCCTTATCCTTCTTCTCT+TGG | + | chr5_2:41557850-41557869 | None:intergenic | 40.0% | |
| ! | CCTTATGTGTCTTTTGTACG+CGG | - | chr5_2:41557869-41557888 | Msa0770570:CDS | 40.0% |
| ! | CTTATGTGTCTTTTGTACGC+GGG | - | chr5_2:41557870-41557889 | Msa0770570:CDS | 40.0% |
| AAGAAGGAACTTTGTGGAGA+AGG | - | chr5_2:41558031-41558050 | Msa0770570:CDS | 40.0% | |
| TTTGTGGAGAAGGAATACCA+TGG | - | chr5_2:41558041-41558060 | Msa0770570:CDS | 40.0% | |
| !! | CCTTCGATTTGTTGTAACCA+TGG | + | chr5_2:41558061-41558080 | None:intergenic | 40.0% |
| CCATGGTTACAACAAATCGA+AGG | - | chr5_2:41558058-41558077 | Msa0770570:CDS | 40.0% | |
| TGAAATGGATGTCAAGTGGT+TGG | - | chr5_2:41558348-41558367 | Msa0770570:intron | 40.0% | |
| TTGATGAAGAACCAGTGACT+AGG | - | chr5_2:41558434-41558453 | Msa0770570:CDS | 40.0% | |
| CTTTCTGATGCATCAATCTG+AGG | - | chr5_2:41558516-41558535 | Msa0770570:CDS | 40.0% | |
| TTCTGATGCATCAATCTGAG+GGG | - | chr5_2:41558518-41558537 | Msa0770570:CDS | 40.0% | |
| TGGAGTTGAAAGAAGCTATG+AGG | - | chr5_2:41558545-41558564 | Msa0770570:intron | 40.0% | |
| AAGAAGCTATGAGGAAAGCT+AGG | - | chr5_2:41558554-41558573 | Msa0770570:intron | 40.0% | |
| AGAAGCTATGAGGAAAGCTA+GGG | - | chr5_2:41558555-41558574 | Msa0770570:intron | 40.0% | |
| TCATAGATGGATGTCATCGA+TGG | + | chr5_2:41558586-41558605 | None:intergenic | 40.0% | |
| ! | TCCATCTATGAGCGTTGTAA+TGG | - | chr5_2:41558595-41558614 | Msa0770570:CDS | 40.0% |
| ! | CCATCTATGAGCGTTGTAAT+GGG | - | chr5_2:41558596-41558615 | Msa0770570:CDS | 40.0% |
| ! | AATGATGGAGAGACAAGCAA+AGG | - | chr5_2:41558696-41558715 | Msa0770570:CDS | 40.0% |
| AAGAGCTTGAGAGAAGGAAT+TGG | - | chr5_2:41557756-41557775 | Msa0770570:CDS | 40.0% | |
| TTGTAGCTTCCAAGAGAAGA+AGG | - | chr5_2:41557838-41557857 | Msa0770570:CDS | 40.0% | |
| CTTCCAAGAGAAGAAGGATA+AGG | - | chr5_2:41557844-41557863 | Msa0770570:CDS | 40.0% | |
| GATCCTTATCCTTCTTCTCT+TGG | + | chr5_2:41557850-41557869 | None:intergenic | 40.0% | |
| ! | CCTTATGTGTCTTTTGTACG+CGG | - | chr5_2:41557869-41557888 | Msa0770570:CDS | 40.0% |
| ! | CTTATGTGTCTTTTGTACGC+GGG | - | chr5_2:41557870-41557889 | Msa0770570:CDS | 40.0% |
| AAGAAGGAACTTTGTGGAGA+AGG | - | chr5_2:41558031-41558050 | Msa0770570:CDS | 40.0% | |
| TTTGTGGAGAAGGAATACCA+TGG | - | chr5_2:41558041-41558060 | Msa0770570:CDS | 40.0% | |
| !! | CCTTCGATTTGTTGTAACCA+TGG | + | chr5_2:41558061-41558080 | None:intergenic | 40.0% |
| CCATGGTTACAACAAATCGA+AGG | - | chr5_2:41558058-41558077 | Msa0770570:CDS | 40.0% | |
| TGAAATGGATGTCAAGTGGT+TGG | - | chr5_2:41558348-41558367 | Msa0770570:intron | 40.0% | |
| TTGATGAAGAACCAGTGACT+AGG | - | chr5_2:41558434-41558453 | Msa0770570:CDS | 40.0% | |
| CTTTCTGATGCATCAATCTG+AGG | - | chr5_2:41558516-41558535 | Msa0770570:CDS | 40.0% | |
| TTCTGATGCATCAATCTGAG+GGG | - | chr5_2:41558518-41558537 | Msa0770570:CDS | 40.0% | |
| TGGAGTTGAAAGAAGCTATG+AGG | - | chr5_2:41558545-41558564 | Msa0770570:intron | 40.0% | |
| AAGAAGCTATGAGGAAAGCT+AGG | - | chr5_2:41558554-41558573 | Msa0770570:intron | 40.0% | |
| AGAAGCTATGAGGAAAGCTA+GGG | - | chr5_2:41558555-41558574 | Msa0770570:intron | 40.0% | |
| TCATAGATGGATGTCATCGA+TGG | + | chr5_2:41558586-41558605 | None:intergenic | 40.0% | |
| ! | TCCATCTATGAGCGTTGTAA+TGG | - | chr5_2:41558595-41558614 | Msa0770570:CDS | 40.0% |
| ! | CCATCTATGAGCGTTGTAAT+GGG | - | chr5_2:41558596-41558615 | Msa0770570:CDS | 40.0% |
| ! | AATGATGGAGAGACAAGCAA+AGG | - | chr5_2:41558696-41558715 | Msa0770570:CDS | 40.0% |
| AAGGTGCGACTCAAAAGAAG+AGG | - | chr5_2:41557654-41557673 | Msa0770570:CDS | 45.0% | |
| CCGCGTACAAAAGACACATA+AGG | + | chr5_2:41557872-41557891 | None:intergenic | 45.0% | |
| ATTCCACACACTAGTGGTGT+CGG | + | chr5_2:41557944-41557963 | None:intergenic | 45.0% | |
| GCTTCAATTCCACACACTAG+TGG | + | chr5_2:41557950-41557969 | None:intergenic | 45.0% | |
| ! | AAGCCTATAACAAGGGTGTG+AGG | - | chr5_2:41558115-41558134 | Msa0770570:intron | 45.0% |
| ! | AGCCTATAACAAGGGTGTGA+GGG | - | chr5_2:41558116-41558135 | Msa0770570:intron | 45.0% |
| GTGGAGGATCATAGATAAGG+AGG | - | chr5_2:41558226-41558245 | Msa0770570:intron | 45.0% | |
| TCGCTGAAATGGATGTCAAG+TGG | - | chr5_2:41558344-41558363 | Msa0770570:intron | 45.0% | |
| ACCCACCTGTGAAGAAAACA+AGG | - | chr5_2:41558407-41558426 | Msa0770570:CDS | 45.0% | |
| !!! | CCCTTGTTTTCTTCACAGGT+GGG | + | chr5_2:41558411-41558430 | None:intergenic | 45.0% |
| CCCACCTGTGAAGAAAACAA+GGG | - | chr5_2:41558408-41558427 | Msa0770570:CDS | 45.0% | |
| !!! | TCCCTTGTTTTCTTCACAGG+TGG | + | chr5_2:41558412-41558431 | None:intergenic | 45.0% |
| ACCTGTGAAGAAAACAAGGG+AGG | - | chr5_2:41558411-41558430 | Msa0770570:CDS | 45.0% | |
| !!! | ACCTCCCTTGTTTTCTTCAC+AGG | + | chr5_2:41558415-41558434 | None:intergenic | 45.0% |
| ATTGAGGTTGGCGAATGATG+TGG | - | chr5_2:41558471-41558490 | Msa0770570:CDS | 45.0% | |
| TCTGATGCATCAATCTGAGG+GGG | - | chr5_2:41558519-41558538 | Msa0770570:CDS | 45.0% | |
| CCCATTACAACGCTCATAGA+TGG | + | chr5_2:41558599-41558618 | None:intergenic | 45.0% | |
| AGAGACAAGCAAAGGACAAC+CGG | - | chr5_2:41558704-41558723 | Msa0770570:CDS | 45.0% | |
| AAAGGACAACCGGGAACTAT+TGG | - | chr5_2:41558714-41558733 | Msa0770570:CDS | 45.0% | |
| TGAGTAGCTCCAATAGTTCC+CGG | + | chr5_2:41558726-41558745 | None:intergenic | 45.0% | |
| AAGGTGCGACTCAAAAGAAG+AGG | - | chr5_2:41557654-41557673 | Msa0770570:CDS | 45.0% | |
| CCGCGTACAAAAGACACATA+AGG | + | chr5_2:41557872-41557891 | None:intergenic | 45.0% | |
| ATTCCACACACTAGTGGTGT+CGG | + | chr5_2:41557944-41557963 | None:intergenic | 45.0% | |
| GCTTCAATTCCACACACTAG+TGG | + | chr5_2:41557950-41557969 | None:intergenic | 45.0% | |
| ! | AAGCCTATAACAAGGGTGTG+AGG | - | chr5_2:41558115-41558134 | Msa0770570:intron | 45.0% |
| ! | AGCCTATAACAAGGGTGTGA+GGG | - | chr5_2:41558116-41558135 | Msa0770570:intron | 45.0% |
| GTGGAGGATCATAGATAAGG+AGG | - | chr5_2:41558226-41558245 | Msa0770570:intron | 45.0% | |
| TCGCTGAAATGGATGTCAAG+TGG | - | chr5_2:41558344-41558363 | Msa0770570:intron | 45.0% | |
| ACCCACCTGTGAAGAAAACA+AGG | - | chr5_2:41558407-41558426 | Msa0770570:CDS | 45.0% | |
| !!! | CCCTTGTTTTCTTCACAGGT+GGG | + | chr5_2:41558411-41558430 | None:intergenic | 45.0% |
| CCCACCTGTGAAGAAAACAA+GGG | - | chr5_2:41558408-41558427 | Msa0770570:CDS | 45.0% | |
| !!! | TCCCTTGTTTTCTTCACAGG+TGG | + | chr5_2:41558412-41558431 | None:intergenic | 45.0% |
| ACCTGTGAAGAAAACAAGGG+AGG | - | chr5_2:41558411-41558430 | Msa0770570:CDS | 45.0% | |
| !!! | ACCTCCCTTGTTTTCTTCAC+AGG | + | chr5_2:41558415-41558434 | None:intergenic | 45.0% |
| ATTGAGGTTGGCGAATGATG+TGG | - | chr5_2:41558471-41558490 | Msa0770570:CDS | 45.0% | |
| TCTGATGCATCAATCTGAGG+GGG | - | chr5_2:41558519-41558538 | Msa0770570:CDS | 45.0% | |
| CCCATTACAACGCTCATAGA+TGG | + | chr5_2:41558599-41558618 | None:intergenic | 45.0% | |
| AGAGACAAGCAAAGGACAAC+CGG | - | chr5_2:41558704-41558723 | Msa0770570:CDS | 45.0% | |
| AAAGGACAACCGGGAACTAT+TGG | - | chr5_2:41558714-41558733 | Msa0770570:CDS | 45.0% | |
| TGAGTAGCTCCAATAGTTCC+CGG | + | chr5_2:41558726-41558745 | None:intergenic | 45.0% | |
| ! | GTCTTTTGTACGCGGGAAAG+AGG | - | chr5_2:41557877-41557896 | Msa0770570:CDS | 50.0% |
| !! | TGGTGTCGGTGTTTCAAGCA+TGG | + | chr5_2:41557930-41557949 | None:intergenic | 50.0% |
| ! | GTCCCTCACACCCTTGTTAT+AGG | + | chr5_2:41558121-41558140 | None:intergenic | 50.0% |
| GCATCAATCTGAGGGGGATA+TGG | - | chr5_2:41558525-41558544 | Msa0770570:CDS | 50.0% | |
| AGCTATGAGGAAAGCTAGGG+TGG | - | chr5_2:41558558-41558577 | Msa0770570:intron | 50.0% | |
| !! | AGCGTTGTAATGGGCAGAGA+GGG | - | chr5_2:41558605-41558624 | Msa0770570:CDS | 50.0% |
| ! | TAATGGGCAGAGAGGGATGT+TGG | - | chr5_2:41558612-41558631 | Msa0770570:CDS | 50.0% |
| GAGACAAGCAAAGGACAACC+GGG | - | chr5_2:41558705-41558724 | Msa0770570:CDS | 50.0% | |
| ! | GTCTTTTGTACGCGGGAAAG+AGG | - | chr5_2:41557877-41557896 | Msa0770570:CDS | 50.0% |
| !! | TGGTGTCGGTGTTTCAAGCA+TGG | + | chr5_2:41557930-41557949 | None:intergenic | 50.0% |
| ! | GTCCCTCACACCCTTGTTAT+AGG | + | chr5_2:41558121-41558140 | None:intergenic | 50.0% |
| GCATCAATCTGAGGGGGATA+TGG | - | chr5_2:41558525-41558544 | Msa0770570:CDS | 50.0% | |
| AGCTATGAGGAAAGCTAGGG+TGG | - | chr5_2:41558558-41558577 | Msa0770570:intron | 50.0% | |
| !! | AGCGTTGTAATGGGCAGAGA+GGG | - | chr5_2:41558605-41558624 | Msa0770570:CDS | 50.0% |
| ! | TAATGGGCAGAGAGGGATGT+TGG | - | chr5_2:41558612-41558631 | Msa0770570:CDS | 50.0% |
| GAGACAAGCAAAGGACAACC+GGG | - | chr5_2:41558705-41558724 | Msa0770570:CDS | 50.0% | |
| ACACCGACACCACTAGTGTG+TGG | - | chr5_2:41557938-41557957 | Msa0770570:CDS | 55.0% | |
| GCTTAGTGATGCGCCACCTA+AGG | - | chr5_2:41558375-41558394 | Msa0770570:CDS | 55.0% | |
| TTCTTCACAGGTGGGTGCCT+AGG | + | chr5_2:41558403-41558422 | None:intergenic | 55.0% | |
| !! | GAGCGTTGTAATGGGCAGAG+AGG | - | chr5_2:41558604-41558623 | Msa0770570:CDS | 55.0% |
| ACACCGACACCACTAGTGTG+TGG | - | chr5_2:41557938-41557957 | Msa0770570:CDS | 55.0% | |
| GCTTAGTGATGCGCCACCTA+AGG | - | chr5_2:41558375-41558394 | Msa0770570:CDS | 55.0% | |
| TTCTTCACAGGTGGGTGCCT+AGG | + | chr5_2:41558403-41558422 | None:intergenic | 55.0% | |
| !! | GAGCGTTGTAATGGGCAGAG+AGG | - | chr5_2:41558604-41558623 | Msa0770570:CDS | 55.0% |
| ! | ATGCGCCACCTAAGGCACCT+AGG | - | chr5_2:41558383-41558402 | Msa0770570:CDS | 60.0% |
| ! | ATGCGCCACCTAAGGCACCT+AGG | - | chr5_2:41558383-41558402 | Msa0770570:CDS | 60.0% |
| GGGTGCCTAGGTGCCTTAGG+TGG | + | chr5_2:41558391-41558410 | None:intergenic | 65.0% | |
| GGTGGGTGCCTAGGTGCCTT+AGG | + | chr5_2:41558394-41558413 | None:intergenic | 65.0% | |
| GGGTGCCTAGGTGCCTTAGG+TGG | + | chr5_2:41558391-41558410 | None:intergenic | 65.0% | |
| GGTGGGTGCCTAGGTGCCTT+AGG | + | chr5_2:41558394-41558413 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 41557620 | 41558771 | 41557620 | ID=Msa0770570;Name=Msa0770570 |
| chr5_2 | mRNA | 41557620 | 41558771 | 41557620 | ID=Msa0770570-mRNA-1;Parent=Msa0770570;Name=Msa0770570-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0|0|1|1|1|3|0|277 |
| chr5_2 | exon | 41558587 | 41558771 | 41558587 | ID=Msa0770570-mRNA-1:exon:13098;Parent=Msa0770570-mRNA-1 |
| chr5_2 | exon | 41558374 | 41558547 | 41558374 | ID=Msa0770570-mRNA-1:exon:13097;Parent=Msa0770570-mRNA-1 |
| chr5_2 | exon | 41557620 | 41558094 | 41557620 | ID=Msa0770570-mRNA-1:exon:13096;Parent=Msa0770570-mRNA-1 |
| chr5_2 | CDS | 41558587 | 41558771 | 41558587 | ID=Msa0770570-mRNA-1:cds;Parent=Msa0770570-mRNA-1 |
| chr5_2 | CDS | 41558374 | 41558547 | 41558374 | ID=Msa0770570-mRNA-1:cds;Parent=Msa0770570-mRNA-1 |
| chr5_2 | CDS | 41557620 | 41558094 | 41557620 | ID=Msa0770570-mRNA-1:cds;Parent=Msa0770570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
