Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868450 | KEH24768.1 | 70.115 | 87 | 1 | 1 | 59 | 120 | 1 | 87 | 7.24e-28 | 119 |
| Msa0868450 | KEH24768.1 | 98.582 | 141 | 2 | 0 | 120 | 260 | 165 | 305 | 7.23e-96 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868450 | sp|Q40784|AAPC_CENCI | 65.468 | 139 | 48 | 0 | 120 | 258 | 191 | 329 | 2.54e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868450 | A0A072U6J5 | 70.115 | 87 | 1 | 1 | 59 | 120 | 1 | 87 | 3.46e-28 | 119 |
| Msa0868450 | A0A072U6J5 | 98.582 | 141 | 2 | 0 | 120 | 260 | 165 | 305 | 3.45e-96 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0868450 | Msa0969820 | 0.802153 | 6.420966e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868450 | MtrunA17_Chr6g0449291 | 98.582 | 141 | 2 | 0 | 120 | 260 | 165 | 305 | 6.65e-100 | 293 |
| Msa0868450 | MtrunA17_Chr6g0449291 | 70.115 | 87 | 1 | 1 | 59 | 120 | 1 | 87 | 6.66e-32 | 119 |
| Msa0868450 | MtrunA17_Chr4g0000451 | 70.290 | 138 | 41 | 0 | 120 | 257 | 51 | 188 | 5.05e-69 | 211 |
| Msa0868450 | MtrunA17_Chr2g0298101 | 67.361 | 144 | 47 | 0 | 115 | 258 | 174 | 317 | 1.40e-67 | 212 |
| Msa0868450 | MtrunA17_Chr7g0275331 | 58.015 | 131 | 55 | 0 | 120 | 250 | 180 | 310 | 3.67e-54 | 177 |
| Msa0868450 | MtrunA17_Chr4g0049381 | 57.252 | 131 | 56 | 0 | 120 | 250 | 180 | 310 | 7.53e-53 | 174 |
| Msa0868450 | MtrunA17_Chr5g0396951 | 60.000 | 125 | 50 | 0 | 120 | 244 | 180 | 304 | 4.05e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868450 | AT5G14500.1 | 71.942 | 139 | 39 | 0 | 120 | 258 | 166 | 304 | 4.15e-72 | 223 |
| Msa0868450 | AT5G14500.1 | 42.529 | 87 | 25 | 1 | 59 | 120 | 1 | 87 | 6.64e-13 | 67.8 |
| Msa0868450 | AT5G14500.2 | 71.942 | 139 | 39 | 0 | 120 | 258 | 191 | 329 | 2.36e-71 | 222 |
| Msa0868450 | AT5G14500.2 | 42.529 | 87 | 25 | 1 | 59 | 120 | 1 | 87 | 8.71e-13 | 67.4 |
| Msa0868450 | AT3G01590.1 | 69.784 | 139 | 42 | 0 | 120 | 258 | 166 | 304 | 4.29e-69 | 216 |
| Msa0868450 | AT3G01590.1 | 41.379 | 87 | 26 | 1 | 59 | 120 | 1 | 87 | 3.42e-13 | 68.6 |
| Msa0868450 | AT3G01590.2 | 69.784 | 139 | 42 | 0 | 120 | 258 | 166 | 304 | 4.29e-69 | 216 |
| Msa0868450 | AT3G01590.2 | 41.379 | 87 | 26 | 1 | 59 | 120 | 1 | 87 | 3.42e-13 | 68.6 |
| Msa0868450 | AT5G57330.1 | 67.883 | 137 | 44 | 0 | 120 | 256 | 175 | 311 | 1.72e-64 | 204 |
| Msa0868450 | AT4G23730.2 | 62.400 | 125 | 47 | 0 | 120 | 244 | 147 | 271 | 2.42e-52 | 171 |
| Msa0868450 | AT4G23730.1 | 62.400 | 125 | 47 | 0 | 120 | 244 | 182 | 306 | 4.77e-52 | 172 |
| Msa0868450 | AT3G61610.2 | 56.204 | 137 | 60 | 0 | 115 | 251 | 169 | 305 | 1.42e-51 | 171 |
| Msa0868450 | AT3G61610.1 | 56.204 | 137 | 60 | 0 | 115 | 251 | 175 | 311 | 1.51e-51 | 171 |
| Msa0868450 | AT4G23730.3 | 60.305 | 131 | 46 | 1 | 120 | 244 | 182 | 312 | 4.51e-50 | 167 |
| Msa0868450 | AT4G25900.1 | 48.000 | 125 | 62 | 1 | 120 | 244 | 194 | 315 | 7.07e-37 | 132 |
Find 67 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAGGCATCTGTATAAT+TGG | 0.207577 | 6_1:+1972618 | None:intergenic |
| GGCTAAAGCTCTACCTGATT+TGG | 0.261406 | 6_1:-1970548 | Msa0868450:CDS |
| TTTCTACTGAACAGGCTAAA+TGG | 0.267382 | 6_1:-1971699 | Msa0868450:intron |
| GATCCTCGTAGAGTTCTTTA+TGG | 0.280881 | 6_1:-1970388 | Msa0868450:CDS |
| TTCTATCCGCACTTTATGTT+TGG | 0.286365 | 6_1:-1966257 | Msa0868450:three_prime_UTR |
| AGACTATAGTTTCTCTTCAT+AGG | 0.288061 | 6_1:-1970259 | Msa0868450:three_prime_UTR |
| TCACATGGCTTCAAGATAAT+AGG | 0.304789 | 6_1:+1970472 | None:intergenic |
| CATCTGGAAGTGAATTCTTC+TGG | 0.316198 | 6_1:+1970695 | None:intergenic |
| ATGGAATCCATGGAATAAAA+AGG | 0.317111 | 6_1:-1970569 | Msa0868450:CDS |
| GCTGATGCAATTACATTTGA+TGG | 0.318284 | 6_1:-1970869 | Msa0868450:CDS |
| GAAACTATAGTCTATATATA+TGG | 0.350330 | 6_1:+1970269 | None:intergenic |
| ATGAAATTGAGAACATTGTT+TGG | 0.367606 | 6_1:-1972741 | Msa0868450:CDS |
| AAACATAAAGTGCGGATAGA+AGG | 0.372807 | 6_1:+1966259 | None:intergenic |
| CACAAGGCTACAAAATTTGC+AGG | 0.374542 | 6_1:+1966230 | None:intergenic |
| CTTTCACTCTTCTCCAATCC+AGG | 0.376719 | 6_1:+1972697 | None:intergenic |
| AAGCTATTGCAGTGGACAAT+TGG | 0.406866 | 6_1:-1970410 | Msa0868450:CDS |
| ATATTATGTTGATGTTGTTA+TGG | 0.408797 | 6_1:-1972776 | Msa0868450:CDS |
| TAATTATTGTAAGGTGGAAA+AGG | 0.409830 | 6_1:+1970160 | None:intergenic |
| AACATCTCTTAATTATTGTA+AGG | 0.410691 | 6_1:+1970151 | None:intergenic |
| GCTAAAGCTCTACCTGATTT+GGG | 0.410922 | 6_1:-1970547 | Msa0868450:CDS |
| TTTCTTCTCATGATCTATGA+TGG | 0.415275 | 6_1:+1970732 | None:intergenic |
| TAATCATCAACTCCCAAATC+AGG | 0.419942 | 6_1:+1970535 | None:intergenic |
| GACTATAGTTTCTCTTCATA+GGG | 0.421777 | 6_1:-1970258 | Msa0868450:three_prime_UTR |
| CACATGGAATGACAAGAAAC+AGG | 0.427401 | 6_1:-1971487 | Msa0868450:CDS |
| TGAGTAATTCAAGAGCATTA+AGG | 0.428845 | 6_1:-1972662 | Msa0868450:CDS |
| AATTATTGTAAGGTGGAAAA+GGG | 0.431474 | 6_1:+1970161 | None:intergenic |
| GCTCTTGAATTACTCACAAA+TGG | 0.432943 | 6_1:+1972669 | None:intergenic |
| AATGTATTTCAAGACAAAGA+TGG | 0.433363 | 6_1:-1972597 | Msa0868450:CDS |
| AACTAATAGTAACCTGCATC+TGG | 0.440068 | 6_1:+1970679 | None:intergenic |
| AATCTTCAGAGAATTGAAAC+TGG | 0.444122 | 6_1:-1970060 | Msa0868450:three_prime_UTR |
| GGATCAGTCAATACAATCCT+TGG | 0.445366 | 6_1:+1972570 | None:intergenic |
| TTTCAGTGAACTGTAATTGA+TGG | 0.453083 | 6_1:-1970364 | Msa0868450:exon |
| ACCTCAGCTGATGAACCATT+TGG | 0.455672 | 6_1:+1972549 | None:intergenic |
| TTGTCTTGAAATACATTCAA+AGG | 0.463676 | 6_1:+1972603 | None:intergenic |
| GTGATAAGAGTGCAGTTGTA+TGG | 0.466146 | 6_1:-1970588 | Msa0868450:intron |
| GTTGATGTTGTTATGGTGGA+TGG | 0.474269 | 6_1:-1972769 | Msa0868450:CDS |
| ATTGGTTGCAGAACCTGGAT+TGG | 0.488869 | 6_1:-1972710 | Msa0868450:CDS |
| CAGATCAAGATTCACAGAAC+AGG | 0.492587 | 6_1:-1970891 | Msa0868450:CDS |
| GTGTTGCAGTTTGGTGATGT+TGG | 0.494871 | 6_1:-1971521 | Msa0868450:intron |
| TCTTGAAGCCATGTGAAGAA+TGG | 0.498380 | 6_1:-1970465 | Msa0868450:CDS |
| AAGAATTCACTTCCAGATGC+AGG | 0.502151 | 6_1:-1970691 | Msa0868450:intron |
| ATGTTATCGTATCCACCTAT+CGG | 0.511839 | 6_1:+1970188 | None:intergenic |
| TGCAATTACATTTGATGGAG+AGG | 0.525933 | 6_1:-1970864 | Msa0868450:intron |
| TAGCCCTTCCATTCTTCACA+TGG | 0.529103 | 6_1:+1970457 | None:intergenic |
| GTGCAGTTGTATGGAATCCA+TGG | 0.531959 | 6_1:-1970579 | Msa0868450:intron |
| ATCTCTTAATTATTGTAAGG+TGG | 0.534200 | 6_1:+1970154 | None:intergenic |
| ATTGTATTGACTGATCCAAA+TGG | 0.534205 | 6_1:-1972564 | Msa0868450:CDS |
| ATCAATGTCATTCCGATAGG+TGG | 0.535117 | 6_1:-1970200 | Msa0868450:three_prime_UTR |
| TTATGTTGATGTTGTTATGG+TGG | 0.541988 | 6_1:-1972773 | Msa0868450:CDS |
| GTATATCAGCTTGCTTCGCA+CGG | 0.554586 | 6_1:-1971651 | Msa0868450:CDS |
| GAAGCCATGTGAAGAATGGA+AGG | 0.558681 | 6_1:-1970461 | Msa0868450:CDS |
| TGCAGTGAAGTGCGTATCGA+GGG | 0.559173 | 6_1:-1970950 | Msa0868450:intron |
| CACACCTCATTGCTGTCTCA+AGG | 0.577373 | 6_1:+1970227 | None:intergenic |
| TATATCAGCTTGCTTCGCAC+GGG | 0.583439 | 6_1:-1971650 | Msa0868450:intron |
| AAGACAAAGATGGATTGCCA+AGG | 0.592129 | 6_1:-1972587 | Msa0868450:CDS |
| TTGATCAATGTCATTCCGAT+AGG | 0.612608 | 6_1:-1970203 | Msa0868450:three_prime_UTR |
| GAATGACAAGAAACAGGATG+TGG | 0.614717 | 6_1:-1971481 | Msa0868450:intron |
| GTGCAGTGAAGTGCGTATCG+AGG | 0.625522 | 6_1:-1970951 | Msa0868450:intron |
| TCCAAATGGTTCATCAGCTG+AGG | 0.630236 | 6_1:-1972550 | Msa0868450:intron |
| GTTTCATCAAGCTATTGCAG+TGG | 0.637223 | 6_1:-1970418 | Msa0868450:CDS |
| AAACAACATAAAGCAATCAG+AGG | 0.644716 | 6_1:-1971676 | Msa0868450:CDS |
| CAACATAAAGCAATCAGAGG+AGG | 0.656588 | 6_1:-1971673 | Msa0868450:CDS |
| AAGCCATGTGAAGAATGGAA+GGG | 0.663507 | 6_1:-1970460 | Msa0868450:CDS |
| GTTGGTTCACTTGAGACACA+TGG | 0.677188 | 6_1:-1971503 | Msa0868450:CDS |
| GGTTCTCCAAACATAAAGTG+CGG | 0.687728 | 6_1:+1966251 | None:intergenic |
| ATTGCCTTGAGACAGCAATG+AGG | 0.718659 | 6_1:-1970231 | Msa0868450:three_prime_UTR |
| AAACCATAAAGAACTCTACG+AGG | 0.756087 | 6_1:+1970385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATAAGTATTTAATTATA+TGG | - | chr6_1:1969380-1969399 | Msa0868450:intron | 10.0% |
| !! | TATTTATAAAGAATATATCA+TGG | - | chr6_1:1972372-1972391 | Msa0868450:intron | 10.0% |
| !! | AAATAATTATTATTATACAC+TGG | + | chr6_1:1972698-1972717 | None:intergenic | 10.0% |
| !!! | ACAAAAAATACTATCATTTT+AGG | + | chr6_1:1966590-1966609 | None:intergenic | 15.0% |
| !!! | TTTGACTTAAATTTATCTTT+TGG | + | chr6_1:1966712-1966731 | None:intergenic | 15.0% |
| !! | TATAAATAACCAAAATACTA+AGG | + | chr6_1:1968071-1968090 | None:intergenic | 15.0% |
| !!! | AATTATTTTGCAATTAGAAA+AGG | + | chr6_1:1969203-1969222 | None:intergenic | 15.0% |
| !! | ACAAAATATAAAAGAACAAT+TGG | + | chr6_1:1969436-1969455 | None:intergenic | 15.0% |
| !!! | TTCATGTTATTTTTCTATAA+AGG | + | chr6_1:1969854-1969873 | None:intergenic | 15.0% |
| !!! | ATCAATTAGTTTTATTGAAA+AGG | + | chr6_1:1970015-1970034 | None:intergenic | 15.0% |
| !!! | GATAACAAAATTTTGTTTTA+AGG | + | chr6_1:1970108-1970127 | None:intergenic | 15.0% |
| !! | TAATATAAAATGCGTTATTA+TGG | + | chr6_1:1970162-1970181 | None:intergenic | 15.0% |
| !! | ATTATTTAGATCTAAAGAAA+CGG | + | chr6_1:1970434-1970453 | None:intergenic | 15.0% |
| !! | TATTTATTAATCACAAATCT+TGG | - | chr6_1:1972178-1972197 | Msa0868450:intron | 15.0% |
| !! | GATAAATATTAAAAAAACGT+GGG | + | chr6_1:1972328-1972347 | None:intergenic | 15.0% |
| !! | TGATAAATATTAAAAAAACG+TGG | + | chr6_1:1972329-1972348 | None:intergenic | 15.0% |
| !! | AATGGTAATAATTTATAAAC+GGG | + | chr6_1:1972556-1972575 | None:intergenic | 15.0% |
| !! | CAATGGTAATAATTTATAAA+CGG | + | chr6_1:1972557-1972576 | None:intergenic | 15.0% |
| !! | ATATTATGTTGATGTTGTTA+TGG | - | chr6_1:1966297-1966316 | Msa0868450:intron | 20.0% |
| !! | AAAGATTATTATTCAAGGTA+TGG | + | chr6_1:1966929-1966948 | None:intergenic | 20.0% |
| !! | AGTCAAAAGATTATTATTCA+AGG | + | chr6_1:1966934-1966953 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTCAAAATTATA+AGG | + | chr6_1:1967007-1967026 | None:intergenic | 20.0% |
| !! | TTCCATCATCAAATATTATT+TGG | - | chr6_1:1967030-1967049 | Msa0868450:intron | 20.0% |
| !!! | TTGTCTAAGTTTTAAAATGA+TGG | - | chr6_1:1967063-1967082 | Msa0868450:intron | 20.0% |
| !!! | AATAAAGCTTTTGAAACATA+TGG | - | chr6_1:1967109-1967128 | Msa0868450:intron | 20.0% |
| !! | AAAAAAATTCTCAACAAGTA+AGG | + | chr6_1:1967502-1967521 | None:intergenic | 20.0% |
| !! | GAAACTATAGTCTATATATA+TGG | + | chr6_1:1968807-1968826 | None:intergenic | 20.0% |
| !! | AACATCTCTTAATTATTGTA+AGG | + | chr6_1:1968925-1968944 | None:intergenic | 20.0% |
| !! | AATTAGAAAAGGTAAAAATG+TGG | + | chr6_1:1969192-1969211 | None:intergenic | 20.0% |
| !!! | TTTGACAAAAAGTTAAGTTT+TGG | + | chr6_1:1969330-1969349 | None:intergenic | 20.0% |
| !! | TTATACTCTTAAGTTAAGTT+TGG | + | chr6_1:1969367-1969386 | None:intergenic | 20.0% |
| !!! | AACTAATTGATGATATACTT+TGG | - | chr6_1:1970024-1970043 | Msa0868450:three_prime_UTR | 20.0% |
| !! | TATTTATCATTCACAAATCT+TGG | - | chr6_1:1972340-1972359 | Msa0868450:intron | 20.0% |
| !!! | CGGAATAAGATTTTTTTTTA+AGG | + | chr6_1:1972462-1972481 | None:intergenic | 20.0% |
| !!! | TGATGCAATTTTTAAAACAA+TGG | + | chr6_1:1972574-1972593 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTATCATGTTTTA+TGG | + | chr6_1:1972781-1972800 | None:intergenic | 20.0% |
| ! | ATGAAATTGAGAACATTGTT+TGG | - | chr6_1:1966332-1966351 | Msa0868450:intron | 25.0% |
| !!! | CATTGTTTGGTTTTTTTGAT+TGG | - | chr6_1:1966345-1966364 | Msa0868450:intron | 25.0% |
| ! | TTGTCTTGAAATACATTCAA+AGG | + | chr6_1:1966473-1966492 | None:intergenic | 25.0% |
| ! | AATGTATTTCAAGACAAAGA+TGG | - | chr6_1:1966476-1966495 | Msa0868450:intron | 25.0% |
| ! | TAGTGATCTTAATGGAAAAA+TGG | - | chr6_1:1966560-1966579 | Msa0868450:intron | 25.0% |
| !!! | TTCAGAAATTTGTGTTACTT+TGG | - | chr6_1:1966902-1966921 | Msa0868450:intron | 25.0% |
| ! | GTTAGTCAAAATTATAAGGA+AGG | + | chr6_1:1967003-1967022 | None:intergenic | 25.0% |
| ! | GTCCAAATAATATTTGATGA+TGG | + | chr6_1:1967035-1967054 | None:intergenic | 25.0% |
| ! | TCATCAAATATTATTTGGAC+CGG | - | chr6_1:1967035-1967054 | Msa0868450:intron | 25.0% |
| ! | TAAAACTTAGACAATCATAC+CGG | + | chr6_1:1967057-1967076 | None:intergenic | 25.0% |
| !! | AAATTTGTCAGTGGTTTTTA+TGG | - | chr6_1:1967279-1967298 | Msa0868450:intron | 25.0% |
| !!! | GTAATTTTTTTCCCTAGAAT+CGG | + | chr6_1:1967315-1967334 | None:intergenic | 25.0% |
| ! | AAAAAATTACCCTAGTAATG+CGG | - | chr6_1:1967325-1967344 | Msa0868450:intron | 25.0% |
| ! | TTCATCATATACACAACATA+TGG | - | chr6_1:1967454-1967473 | Msa0868450:intron | 25.0% |
| ! | TAGTTGAATATCAACAAGTT+TGG | + | chr6_1:1967525-1967544 | None:intergenic | 25.0% |
| ! | GATTTGATATTAAAGTCAAC+AGG | - | chr6_1:1967669-1967688 | Msa0868450:intron | 25.0% |
| ! | ACATCATGAAAGTAATTGAA+TGG | + | chr6_1:1967809-1967828 | None:intergenic | 25.0% |
| ! | AGTGAAAATGCAAAAGAAAA+TGG | + | chr6_1:1967964-1967983 | None:intergenic | 25.0% |
| !! | TTTTATCTGTATCAGATATC+AGG | - | chr6_1:1967991-1968010 | Msa0868450:intron | 25.0% |
| ! | GTATATATGAAAGAATGTCA+TGG | + | chr6_1:1968248-1968267 | None:intergenic | 25.0% |
| !!! | CTATGATGGCAATTTTATTT+GGG | + | chr6_1:1968330-1968349 | None:intergenic | 25.0% |
| !! | TCTATGATGGCAATTTTATT+TGG | + | chr6_1:1968331-1968350 | None:intergenic | 25.0% |
| ! | AATTATTGTAAGGTGGAAAA+GGG | + | chr6_1:1968915-1968934 | None:intergenic | 25.0% |
| ! | TAATTATTGTAAGGTGGAAA+AGG | + | chr6_1:1968916-1968935 | None:intergenic | 25.0% |
| ! | ATCTCTTAATTATTGTAAGG+TGG | + | chr6_1:1968922-1968941 | None:intergenic | 25.0% |
| !!! | AATTCTCTGAAGATTTTCAT+TGG | + | chr6_1:1969008-1969027 | None:intergenic | 25.0% |
| ! | AAACATAAAGTGAGGATAAA+AGG | + | chr6_1:1969117-1969136 | None:intergenic | 25.0% |
| !! | TTTTATCCTCACTTTATGTT+TGG | - | chr6_1:1969116-1969135 | Msa0868450:intron | 25.0% |
| !!! | AATTTTTACAACGTTGACTT+TGG | - | chr6_1:1969232-1969251 | Msa0868450:intron | 25.0% |
| ! | TATTATACTAATTATGGGTC+CGG | + | chr6_1:1969749-1969768 | None:intergenic | 25.0% |
| ! | ATCACTTCAAAAGAAATGAA+GGG | + | chr6_1:1969902-1969921 | None:intergenic | 25.0% |
| ! | TAAAATGCGTTATTATGGAA+GGG | + | chr6_1:1970157-1970176 | None:intergenic | 25.0% |
| ! | ATAAAATGCGTTATTATGGA+AGG | + | chr6_1:1970158-1970177 | None:intergenic | 25.0% |
| !!! | TATTATTTTTAACTTTCCGC+CGG | - | chr6_1:1970285-1970304 | Msa0868450:three_prime_UTR | 25.0% |
| ! | TCTCACTAAAAAACTAAAAC+CGG | + | chr6_1:1970307-1970326 | None:intergenic | 25.0% |
| ! | AAAGATTCAGTCAATGATTT+GGG | - | chr6_1:1970588-1970607 | Msa0868450:intron | 25.0% |
| !!! | TTCACTTTTACGTTTTTTAG+CGG | - | chr6_1:1970719-1970738 | Msa0868450:CDS | 25.0% |
| ! | AGAGTGAAAATGGAAAATTA+GGG | + | chr6_1:1970872-1970891 | None:intergenic | 25.0% |
| ! | AAGAGTGAAAATGGAAAATT+AGG | + | chr6_1:1970873-1970892 | None:intergenic | 25.0% |
| ! | AAGTAGAGAAGTTTGAATAT+AGG | - | chr6_1:1971390-1971409 | Msa0868450:intron | 25.0% |
| ! | AGATACTAATAACGATAAAG+AGG | + | chr6_1:1971556-1971575 | None:intergenic | 25.0% |
| ! | ATCGTTATTAGTATCTTTCT+TGG | - | chr6_1:1971560-1971579 | Msa0868450:intron | 25.0% |
| ! | ACACTAAGCTTATAGAAAAA+GGG | + | chr6_1:1971666-1971685 | None:intergenic | 25.0% |
| ! | AGTAATAGAAATAAGCTTAG+AGG | + | chr6_1:1971691-1971710 | None:intergenic | 25.0% |
| !! | GTATATAAAGCATCACATAA+TGG | + | chr6_1:1971788-1971807 | None:intergenic | 25.0% |
| ! | TGGATGAAATAGTTTATACA+TGG | + | chr6_1:1971978-1971997 | None:intergenic | 25.0% |
| ! | TTATCTTACATAAGAAAGGA+CGG | + | chr6_1:1972022-1972041 | None:intergenic | 25.0% |
| ! | ATCAATCAGTCATAAATCTT+TGG | - | chr6_1:1972141-1972160 | Msa0868450:intron | 25.0% |
| ! | TAAAAATAAGTATTCCACAG+AGG | + | chr6_1:1972407-1972426 | None:intergenic | 25.0% |
| !! | CATCTTTTATCAGTGAATTT+CGG | - | chr6_1:1972720-1972739 | Msa0868450:CDS | 25.0% |
| TTATGTTGATGTTGTTATGG+TGG | - | chr6_1:1966300-1966319 | Msa0868450:intron | 30.0% | |
| !! | TGAGTAATTCAAGAGCATTA+AGG | - | chr6_1:1966411-1966430 | Msa0868450:intron | 30.0% |
| !! | TTCAAAGGCATCTGTATAAT+TGG | + | chr6_1:1966458-1966477 | None:intergenic | 30.0% |
| !! | ATTGTATTGACTGATCCAAA+TGG | - | chr6_1:1966509-1966528 | Msa0868450:intron | 30.0% |
| ! | TCTTTTGCTAGTGATCTTAA+TGG | - | chr6_1:1966552-1966571 | Msa0868450:intron | 30.0% |
| TTGTGTAGCTCAACATAAAT+AGG | - | chr6_1:1966840-1966859 | Msa0868450:intron | 30.0% | |
| !!! | CTTTTGAAACATATGGTTTC+AGG | - | chr6_1:1967116-1967135 | Msa0868450:intron | 30.0% |
| ATGTTTCTTGGAAGAATCAA+AGG | - | chr6_1:1967159-1967178 | Msa0868450:intron | 30.0% | |
| AAAAACCACTGACAAATTTG+TGG | + | chr6_1:1967278-1967297 | None:intergenic | 30.0% | |
| ! | TAGGTATTTTTCTACTGAAC+AGG | - | chr6_1:1967366-1967385 | Msa0868450:intron | 30.0% |
| AAACAACATAAAGCAATCAG+AGG | - | chr6_1:1967397-1967416 | Msa0868450:intron | 30.0% | |
| ACAGATGAATGATTGTCTAT+TGG | + | chr6_1:1967648-1967667 | None:intergenic | 30.0% | |
| AATAGACAATCATTCATCTG+TGG | - | chr6_1:1967647-1967666 | Msa0868450:intron | 30.0% | |
| ! | ATCATCATGCCTTAGTATTT+TGG | - | chr6_1:1968059-1968078 | Msa0868450:intron | 30.0% |
| ! | TAGCTCTCTAAACATTGTTT+TGG | - | chr6_1:1968269-1968288 | Msa0868450:intron | 30.0% |
| TTTCTTCTCATGATCTATGA+TGG | + | chr6_1:1968344-1968363 | None:intergenic | 30.0% | |
| ATGCAGGTTACTATTAGTTA+GGG | - | chr6_1:1968398-1968417 | Msa0868450:intron | 30.0% | |
| ATGGAATCCATGGAATAAAA+AGG | - | chr6_1:1968504-1968523 | Msa0868450:intron | 30.0% | |
| TTTCAGTGAACTGTAATTGA+TGG | - | chr6_1:1968709-1968728 | Msa0868450:intron | 30.0% | |
| AGACTATAGTTTCTCTTCAT+AGG | - | chr6_1:1968814-1968833 | Msa0868450:intron | 30.0% | |
| GACTATAGTTTCTCTTCATA+GGG | - | chr6_1:1968815-1968834 | Msa0868450:intron | 30.0% | |
| ! | TTAAGAGATGTTTTGCTTCA+TGG | - | chr6_1:1968933-1968952 | Msa0868450:intron | 30.0% |
| AATCTTCAGAGAATTGAAAC+TGG | - | chr6_1:1969013-1969032 | Msa0868450:intron | 30.0% | |
| TGAGATTGTTGAACCAAAAT+GGG | + | chr6_1:1969491-1969510 | None:intergenic | 30.0% | |
| TATTTGGTCGATAGTACTTA+AGG | + | chr6_1:1969544-1969563 | None:intergenic | 30.0% | |
| AGAACCATGTTCTCAATATT+TGG | + | chr6_1:1969560-1969579 | None:intergenic | 30.0% | |
| TGAGACGTACAATTCATATA+CGG | + | chr6_1:1969812-1969831 | None:intergenic | 30.0% | |
| CATCACTTCAAAAGAAATGA+AGG | + | chr6_1:1969903-1969922 | None:intergenic | 30.0% | |
| GAAAGATTCAGTCAATGATT+TGG | - | chr6_1:1970587-1970606 | Msa0868450:intron | 30.0% | |
| !! | TCACTTTTACGTTTTTTAGC+GGG | - | chr6_1:1970720-1970739 | Msa0868450:CDS | 30.0% |
| AAACACGATCAATACAATAC+TGG | + | chr6_1:1971279-1971298 | None:intergenic | 30.0% | |
| TAAATTTCTCTAGCGAGAAT+AGG | + | chr6_1:1971329-1971348 | None:intergenic | 30.0% | |
| GAATATAGGAAACGTTTAAC+TGG | - | chr6_1:1971404-1971423 | Msa0868450:intron | 30.0% | |
| GTACTTTCCTAGTTAAGTTA+AGG | - | chr6_1:1971618-1971637 | Msa0868450:intron | 30.0% | |
| AGGATTTCCTTAACTTAACT+AGG | + | chr6_1:1971628-1971647 | None:intergenic | 30.0% | |
| TTAAGTTAAGGAAATCCTCT+CGG | - | chr6_1:1971630-1971649 | Msa0868450:intron | 30.0% | |
| CACACTAAGCTTATAGAAAA+AGG | + | chr6_1:1971667-1971686 | None:intergenic | 30.0% | |
| TGAGAAACATTGTAAACTCT+TGG | - | chr6_1:1971734-1971753 | Msa0868450:intron | 30.0% | |
| ATTCATTGTGTTTCCTCTAT+TGG | - | chr6_1:1971823-1971842 | Msa0868450:intron | 30.0% | |
| AAGTTCAATGCTTTCTACTT+TGG | - | chr6_1:1971850-1971869 | Msa0868450:intron | 30.0% | |
| TAAAGACAAATTCTACCATG+AGG | - | chr6_1:1971874-1971893 | Msa0868450:intron | 30.0% | |
| !! | TTGCTTTCTAAAGTTTAGAG+TGG | + | chr6_1:1971998-1972017 | None:intergenic | 30.0% |
| ACGGTTATCTTACATAAGAA+AGG | + | chr6_1:1972026-1972045 | None:intergenic | 30.0% | |
| GCTCTTGAATTACTCACAAA+TGG | + | chr6_1:1966407-1966426 | None:intergenic | 35.0% | |
| CATTCTATGCTTACTTGCTT+TGG | - | chr6_1:1966966-1966985 | Msa0868450:intron | 35.0% | |
| TTCTTGGAAGAATCAAAGGA+AGG | - | chr6_1:1967163-1967182 | Msa0868450:intron | 35.0% | |
| !!! | ACTGCTTTTTATGAGCAGTA+AGG | - | chr6_1:1967190-1967209 | Msa0868450:intron | 35.0% |
| !! | GTTTTAAACCTCCGATTCTA+GGG | - | chr6_1:1967301-1967320 | Msa0868450:intron | 35.0% |
| !!! | ATTTTTTTCCCTAGAATCGG+AGG | + | chr6_1:1967312-1967331 | None:intergenic | 35.0% |
| GACTATCGAGTTTGATCAAT+AGG | - | chr6_1:1967347-1967366 | Msa0868450:intron | 35.0% | |
| TTTCTACTGAACAGGCTAAA+TGG | - | chr6_1:1967374-1967393 | Msa0868450:intron | 35.0% | |
| CTCAACAAGTAAGGAGAAAA+CGG | + | chr6_1:1967493-1967512 | None:intergenic | 35.0% | |
| TACAATTCTGTGTTGCAGTT+TGG | - | chr6_1:1967543-1967562 | Msa0868450:intron | 35.0% | |
| GATGAATGATTGTCTATTGG+AGG | + | chr6_1:1967645-1967664 | None:intergenic | 35.0% | |
| CTTTATGTTGAAGATGTCTC+TGG | - | chr6_1:1967741-1967760 | Msa0868450:intron | 35.0% | |
| !!! | GTATATGCAGTTTTGAGTTG+AGG | - | chr6_1:1967872-1967891 | Msa0868450:intron | 35.0% |
| ! | TTATCAGTGTTTCTGACTCT+AGG | + | chr6_1:1967937-1967956 | None:intergenic | 35.0% |
| GCTGATGCAATTACATTTGA+TGG | - | chr6_1:1968204-1968223 | Msa0868450:intron | 35.0% | |
| TGCAATTACATTTGATGGAG+AGG | - | chr6_1:1968209-1968228 | Msa0868450:intron | 35.0% | |
| ATTACATTTGATGGAGAGGT+AGG | - | chr6_1:1968213-1968232 | Msa0868450:intron | 35.0% | |
| !!! | GTTTTGGTTTACCTTGTAGA+CGG | - | chr6_1:1968285-1968304 | Msa0868450:intron | 35.0% |
| AACTAATAGTAACCTGCATC+TGG | + | chr6_1:1968397-1968416 | None:intergenic | 35.0% | |
| GATGCAGGTTACTATTAGTT+AGG | - | chr6_1:1968397-1968416 | Msa0868450:intron | 35.0% | |
| !! | GCTTTAGCCTTTTTATTCCA+TGG | + | chr6_1:1968514-1968533 | None:intergenic | 35.0% |
| TAATCATCAACTCCCAAATC+AGG | + | chr6_1:1968541-1968560 | None:intergenic | 35.0% | |
| TCACATGGCTTCAAGATAAT+AGG | + | chr6_1:1968604-1968623 | None:intergenic | 35.0% | |
| AAACCATAAAGAACTCTACG+AGG | + | chr6_1:1968691-1968710 | None:intergenic | 35.0% | |
| TTGATCAATGTCATTCCGAT+AGG | - | chr6_1:1968870-1968889 | Msa0868450:intron | 35.0% | |
| ATGTTATCGTATCCACCTAT+CGG | + | chr6_1:1968888-1968907 | None:intergenic | 35.0% | |
| !! | CGATGTCAATGAAGTTTTGA+TGG | + | chr6_1:1969461-1969480 | None:intergenic | 35.0% |
| ! | ACATCGTAAGAAACCCATTT+TGG | - | chr6_1:1969475-1969494 | Msa0868450:intron | 35.0% |
| GTGAGATTGTTGAACCAAAA+TGG | + | chr6_1:1969492-1969511 | None:intergenic | 35.0% | |
| TCGACCAAATATTGAGAACA+TGG | - | chr6_1:1969553-1969572 | Msa0868450:intron | 35.0% | |
| ACGTCTCAATGTTACAGTTT+AGG | - | chr6_1:1969824-1969843 | Msa0868450:intron | 35.0% | |
| CGTCTCAATGTTACAGTTTA+GGG | - | chr6_1:1969825-1969844 | Msa0868450:intron | 35.0% | |
| ACTGTCGTCTTGACAATTTA+AGG | - | chr6_1:1969952-1969971 | Msa0868450:intron | 35.0% | |
| CTGTCGTCTTGACAATTTAA+GGG | - | chr6_1:1969953-1969972 | Msa0868450:intron | 35.0% | |
| CACTAAAAAACTAAAACCGG+CGG | + | chr6_1:1970304-1970323 | None:intergenic | 35.0% | |
| ACGGAAAAAAAAGTTGCAGA+GGG | + | chr6_1:1970415-1970434 | None:intergenic | 35.0% | |
| AACGGAAAAAAAAGTTGCAG+AGG | + | chr6_1:1970416-1970435 | None:intergenic | 35.0% | |
| !! | CACTTTTACGTTTTTTAGCG+GGG | - | chr6_1:1970721-1970740 | Msa0868450:CDS | 35.0% |
| GAAAAATCGATCGAGTCAAA+GGG | + | chr6_1:1970956-1970975 | None:intergenic | 35.0% | |
| AGAAAAATCGATCGAGTCAA+AGG | + | chr6_1:1970957-1970976 | None:intergenic | 35.0% | |
| TATTGTGATTTGATTCACGC+AGG | - | chr6_1:1971056-1971075 | Msa0868450:intron | 35.0% | |
| ATTAAACTTGAAGCCAGTAG+AGG | + | chr6_1:1971302-1971321 | None:intergenic | 35.0% | |
| TGGTGTCCTATTAACAGAAA+GGG | + | chr6_1:1971491-1971510 | None:intergenic | 35.0% | |
| ! | TTGGTGTCCTATTAACAGAA+AGG | + | chr6_1:1971492-1971511 | None:intergenic | 35.0% |
| ATTGAACTTGAAGCCAATAG+AGG | + | chr6_1:1971839-1971858 | None:intergenic | 35.0% | |
| AAATTGTTTGAACTGCCGAT+GGG | + | chr6_1:1971951-1971970 | None:intergenic | 35.0% | |
| TAAATTGTTTGAACTGCCGA+TGG | + | chr6_1:1971952-1971971 | None:intergenic | 35.0% | |
| TATCAGTGAATTTCGGAAAC+TGG | - | chr6_1:1972727-1972746 | Msa0868450:CDS | 35.0% | |
| AAACATAAAGTGCGGATAGA+AGG | + | chr6_1:1972817-1972836 | None:intergenic | 35.0% | |
| TTCTATCCGCACTTTATGTT+TGG | - | chr6_1:1972816-1972835 | Msa0868450:five_prime_UTR | 35.0% | |
| ! | GTTGATGTTGTTATGGTGGA+TGG | - | chr6_1:1966304-1966323 | Msa0868450:intron | 40.0% |
| !! | TTTTGATTGGTTGCAGAACC+TGG | - | chr6_1:1966358-1966377 | Msa0868450:intron | 40.0% |
| !! | AAGACAAAGATGGATTGCCA+AGG | - | chr6_1:1966486-1966505 | Msa0868450:intron | 40.0% |
| GGATCAGTCAATACAATCCT+TGG | + | chr6_1:1966506-1966525 | None:intergenic | 40.0% | |
| ! | TAACACATCAAGAGCGTGTT+TGG | + | chr6_1:1966812-1966831 | None:intergenic | 40.0% |
| ! | TGGTTTCAGGTGCTTCTATA+TGG | - | chr6_1:1967129-1967148 | Msa0868450:intron | 40.0% |
| ! | TTTCAGGTGCTTCTATATGG+AGG | - | chr6_1:1967132-1967151 | Msa0868450:intron | 40.0% |
| TTCAGGTGCTTCTATATGGA+GGG | - | chr6_1:1967133-1967152 | Msa0868450:intron | 40.0% | |
| ! | TATGGAGGGCATATGTTTCT+TGG | - | chr6_1:1967147-1967166 | Msa0868450:intron | 40.0% |
| GACTTCCACAAATTTGTCAG+TGG | - | chr6_1:1967270-1967289 | Msa0868450:intron | 40.0% | |
| !!! | GGTTTTAAACCTCCGATTCT+AGG | - | chr6_1:1967300-1967319 | Msa0868450:intron | 40.0% |
| CAACATAAAGCAATCAGAGG+AGG | - | chr6_1:1967400-1967419 | Msa0868450:intron | 40.0% | |
| CACATGGAATGACAAGAAAC+AGG | - | chr6_1:1967586-1967605 | Msa0868450:intron | 40.0% | |
| GAATGACAAGAAACAGGATG+TGG | - | chr6_1:1967592-1967611 | Msa0868450:intron | 40.0% | |
| AAGAAACAGGATGTGGTCAT+TGG | - | chr6_1:1967599-1967618 | Msa0868450:intron | 40.0% | |
| TGATTGTCTATTGGAGGTAG+TGG | + | chr6_1:1967639-1967658 | None:intergenic | 40.0% | |
| ACATATGATGCATACCTTCG+TGG | + | chr6_1:1967711-1967730 | None:intergenic | 40.0% | |
| GTTGTGTCAGTTATACGTGT+CGG | + | chr6_1:1967770-1967789 | None:intergenic | 40.0% | |
| ACTTTCATGATGTGTGTCGT+CGG | - | chr6_1:1967816-1967835 | Msa0868450:intron | 40.0% | |
| CTTAGGATATCTCTAAGTGC+TGG | - | chr6_1:1967895-1967914 | Msa0868450:intron | 40.0% | |
| GGCATGATGATCATGTAGAA+AGG | + | chr6_1:1968050-1968069 | None:intergenic | 40.0% | |
| CAGATCAAGATTCACAGAAC+AGG | - | chr6_1:1968182-1968201 | Msa0868450:intron | 40.0% | |
| CATCTGGAAGTGAATTCTTC+TGG | + | chr6_1:1968381-1968400 | None:intergenic | 40.0% | |
| AAGAATTCACTTCCAGATGC+AGG | - | chr6_1:1968382-1968401 | Msa0868450:intron | 40.0% | |
| ! | GTGATAAGAGTGCAGTTGTA+TGG | - | chr6_1:1968485-1968504 | Msa0868450:intron | 40.0% |
| GCTAAAGCTCTACCTGATTT+GGG | - | chr6_1:1968526-1968545 | Msa0868450:intron | 40.0% | |
| TCTTGAAGCCATGTGAAGAA+TGG | - | chr6_1:1968608-1968627 | Msa0868450:intron | 40.0% | |
| AAGCCATGTGAAGAATGGAA+GGG | - | chr6_1:1968613-1968632 | Msa0868450:intron | 40.0% | |
| GTTTCATCAAGCTATTGCAG+TGG | - | chr6_1:1968655-1968674 | Msa0868450:intron | 40.0% | |
| AAGCTATTGCAGTGGACAAT+TGG | - | chr6_1:1968663-1968682 | Msa0868450:intron | 40.0% | |
| GATCCTCGTAGAGTTCTTTA+TGG | - | chr6_1:1968685-1968704 | Msa0868450:intron | 40.0% | |
| ATCAATGTCATTCCGATAGG+TGG | - | chr6_1:1968873-1968892 | Msa0868450:intron | 40.0% | |
| GGTTCTCCAAACATAAAGTG+AGG | + | chr6_1:1969125-1969144 | None:intergenic | 40.0% | |
| ! | TGGAGAACCTGCAAATTTTG+TGG | - | chr6_1:1969136-1969155 | Msa0868450:intron | 40.0% |
| CATGTTCATGATCACAAGCA+AGG | + | chr6_1:1969162-1969181 | None:intergenic | 40.0% | |
| AAACGTCCAACTCGATCAAT+CGG | - | chr6_1:1969517-1969536 | Msa0868450:intron | 40.0% | |
| ! | CATTTAGTTCACCCAGATGA+AGG | + | chr6_1:1969603-1969622 | None:intergenic | 40.0% |
| CTAAATGTTTCCGTCTGAGT+TGG | - | chr6_1:1969616-1969635 | Msa0868450:intron | 40.0% | |
| CATCCACATAGACATAAGGA+CGG | + | chr6_1:1969672-1969691 | None:intergenic | 40.0% | |
| ! | ATGTCAAATGTCTGGCTTGA+AGG | + | chr6_1:1969722-1969741 | None:intergenic | 40.0% |
| CCAGACATTTGACATCAATC+CGG | - | chr6_1:1969727-1969746 | Msa0868450:intron | 40.0% | |
| ATGCGTTATTATGGAAGGGT+TGG | + | chr6_1:1970153-1970172 | None:intergenic | 40.0% | |
| TCTTTCTCTTTCAGTCATCG+AGG | - | chr6_1:1970352-1970371 | Msa0868450:three_prime_UTR | 40.0% | |
| CGGAAAAAAAAGTTGCAGAG+GGG | + | chr6_1:1970414-1970433 | None:intergenic | 40.0% | |
| !! | TGTGTGATTCAGCCTTATTG+CGG | - | chr6_1:1970548-1970567 | Msa0868450:CDS | 40.0% |
| TCACCATAAACTCATGCTTC+CGG | + | chr6_1:1970629-1970648 | None:intergenic | 40.0% | |
| ACGCAGAGAAAGAGTGAAAA+TGG | + | chr6_1:1970882-1970901 | None:intergenic | 40.0% | |
| !! | ACCTGGATTTCGTTTTTGCT+AGG | - | chr6_1:1970907-1970926 | Msa0868450:CDS | 40.0% |
| ACCTAGCAAAAACGAAATCC+AGG | + | chr6_1:1970911-1970930 | None:intergenic | 40.0% | |
| CAAAGCGGGATTTGAGAATT+TGG | + | chr6_1:1971098-1971117 | None:intergenic | 40.0% | |
| ATTGATCGTGTTTCCTCTAC+TGG | - | chr6_1:1971286-1971305 | Msa0868450:intron | 40.0% | |
| TTTCTCTAGCGAGAATAGGA+AGG | + | chr6_1:1971325-1971344 | None:intergenic | 40.0% | |
| ACATTCACAATATAGCCGAG+TGG | - | chr6_1:1971348-1971367 | Msa0868450:intron | 40.0% | |
| GGTTGTAATCTCCCCTTATT+TGG | - | chr6_1:1971425-1971444 | Msa0868450:intron | 40.0% | |
| ! | GTAATCTCCCCTTATTTGGT+TGG | - | chr6_1:1971429-1971448 | Msa0868450:intron | 40.0% |
| GACTTAGCCAACCAAATAAG+GGG | + | chr6_1:1971439-1971458 | None:intergenic | 40.0% | |
| GGACTTAGCCAACCAAATAA+GGG | + | chr6_1:1971440-1971459 | None:intergenic | 40.0% | |
| TAACCCTAAACCTAACGGAA+GGG | + | chr6_1:1971461-1971480 | None:intergenic | 40.0% | |
| ! | TTCCGTTAGGTTTAGGGTTA+GGG | - | chr6_1:1971461-1971480 | Msa0868450:intron | 40.0% |
| AACCCTAACCCTAAACCTAA+CGG | + | chr6_1:1971466-1971485 | None:intergenic | 40.0% | |
| ! | GGTTAGCCCTTTCTGTTAAT+AGG | - | chr6_1:1971482-1971501 | Msa0868450:CDS | 40.0% |
| TAATAGGACACCAACCCAAA+AGG | - | chr6_1:1971498-1971517 | Msa0868450:CDS | 40.0% | |
| !! | TAGAGCATTTCCTTTTGGGT+TGG | + | chr6_1:1971511-1971530 | None:intergenic | 40.0% |
| !! | CGCTTAGAGCATTTCCTTTT+GGG | + | chr6_1:1971515-1971534 | None:intergenic | 40.0% |
| GTGGGATACAATTATCCCAT+CGG | - | chr6_1:1971933-1971952 | Msa0868450:intron | 40.0% | |
| GGTTCTCCAAACATAAAGTG+CGG | + | chr6_1:1969125-1969144 | None:intergenic | 40.0% | |
| ATTGGTTGCAGAACCTGGAT+TGG | - | chr6_1:1966363-1966382 | Msa0868450:intron | 45.0% | |
| CTTTCACTCTTCTCCAATCC+AGG | + | chr6_1:1966379-1966398 | None:intergenic | 45.0% | |
| TCCAAATGGTTCATCAGCTG+AGG | - | chr6_1:1966523-1966542 | Msa0868450:intron | 45.0% | |
| ACCTCAGCTGATGAACCATT+TGG | + | chr6_1:1966527-1966546 | None:intergenic | 45.0% | |
| AATGGTTCATCAGCTGAGGT+TGG | - | chr6_1:1966527-1966546 | Msa0868450:intron | 45.0% | |
| CTCGATAGTCCGCATTACTA+GGG | + | chr6_1:1967337-1967356 | None:intergenic | 45.0% | |
| ACTCGATAGTCCGCATTACT+AGG | + | chr6_1:1967338-1967357 | None:intergenic | 45.0% | |
| ! | GTATATCAGCTTGCTTCGCA+CGG | - | chr6_1:1967422-1967441 | Msa0868450:intron | 45.0% |
| ! | TATATCAGCTTGCTTCGCAC+GGG | - | chr6_1:1967423-1967442 | Msa0868450:intron | 45.0% |
| !! | GTGTTGCAGTTTGGTGATGT+TGG | - | chr6_1:1967552-1967571 | Msa0868450:intron | 45.0% |
| ! | GTTGGTTCACTTGAGACACA+TGG | - | chr6_1:1967570-1967589 | Msa0868450:intron | 45.0% |
| ! | CTATTGGAGGTAGTGGTGAA+GGG | + | chr6_1:1967632-1967651 | None:intergenic | 45.0% |
| ! | TCTATTGGAGGTAGTGGTGA+AGG | + | chr6_1:1967633-1967652 | None:intergenic | 45.0% |
| TTGACTTAAAGACGCCACGA+AGG | - | chr6_1:1967694-1967713 | Msa0868450:intron | 45.0% | |
| !!! | GCAGTTTTGAGTTGAGGCTT+AGG | - | chr6_1:1967878-1967897 | Msa0868450:intron | 45.0% |
| GTATACTCTGTCCGTCTACA+AGG | + | chr6_1:1968299-1968318 | None:intergenic | 45.0% | |
| GTGCAGTTGTATGGAATCCA+TGG | - | chr6_1:1968494-1968513 | Msa0868450:intron | 45.0% | |
| GGCTAAAGCTCTACCTGATT+TGG | - | chr6_1:1968525-1968544 | Msa0868450:intron | 45.0% | |
| GAAGCCATGTGAAGAATGGA+AGG | - | chr6_1:1968612-1968631 | Msa0868450:intron | 45.0% | |
| TAGCCCTTCCATTCTTCACA+TGG | + | chr6_1:1968619-1968638 | None:intergenic | 45.0% | |
| ATTGCCTTGAGACAGCAATG+AGG | - | chr6_1:1968842-1968861 | Msa0868450:intron | 45.0% | |
| AGCAAGGCCACAAAATTTGC+AGG | + | chr6_1:1969146-1969165 | None:intergenic | 45.0% | |
| TAAGGACCGATTGATCGAGT+TGG | + | chr6_1:1969526-1969545 | None:intergenic | 45.0% | |
| CGATCATCTACCAACTCAGA+CGG | + | chr6_1:1969629-1969648 | None:intergenic | 45.0% | |
| CGTCCTTATGTCTATGTGGA+TGG | - | chr6_1:1969670-1969689 | Msa0868450:intron | 45.0% | |
| CGACCATCCACATAGACATA+AGG | + | chr6_1:1969676-1969695 | None:intergenic | 45.0% | |
| ATGTCTATGTGGATGGTCGA+CGG | - | chr6_1:1969677-1969696 | Msa0868450:intron | 45.0% | |
| CCGGATTGATGTCAAATGTC+TGG | + | chr6_1:1969730-1969749 | None:intergenic | 45.0% | |
| TTCTCTTTCAGTCATCGAGG+AGG | - | chr6_1:1970355-1970374 | Msa0868450:three_prime_UTR | 45.0% | |
| TCTCTTTCAGTCATCGAGGA+GGG | - | chr6_1:1970356-1970375 | Msa0868450:three_prime_UTR | 45.0% | |
| TGAACACGAACACCGCAATA+AGG | + | chr6_1:1970563-1970582 | None:intergenic | 45.0% | |
| ! | GATCCGGAAGCATGAGTTTA+TGG | - | chr6_1:1970623-1970642 | Msa0868450:intron | 45.0% |
| CTTTCTCTGCGTAAACTACC+TGG | - | chr6_1:1970890-1970909 | Msa0868450:CDS | 45.0% | |
| CGAGTCAAAGGGACAATACT+TGG | + | chr6_1:1970945-1970964 | None:intergenic | 45.0% | |
| GAATTTCGAGAGAGCAAAGC+GGG | + | chr6_1:1971112-1971131 | None:intergenic | 45.0% | |
| GGAATTTCGAGAGAGCAAAG+CGG | + | chr6_1:1971113-1971132 | None:intergenic | 45.0% | |
| ! | TTGTTGCATTGATGCACAGG+AGG | + | chr6_1:1971188-1971207 | None:intergenic | 45.0% |
| !! | AGCTTGTTGCATTGATGCAC+AGG | + | chr6_1:1971191-1971210 | None:intergenic | 45.0% |
| ! | AAGCTTGCTCCCAAGATAGA+AGG | - | chr6_1:1971206-1971225 | Msa0868450:intron | 45.0% |
| CATGGGTGTCCTTCTATCTT+GGG | + | chr6_1:1971218-1971237 | None:intergenic | 45.0% | |
| ! | TGATACCTACACAGGAGCAT+GGG | + | chr6_1:1971235-1971254 | None:intergenic | 45.0% |
| AGCATCACTGATACCTACAC+AGG | + | chr6_1:1971243-1971262 | None:intergenic | 45.0% | |
| TTCACAATATAGCCGAGTGG+TGG | - | chr6_1:1971351-1971370 | Msa0868450:intron | 45.0% | |
| GGGACTTAGCCAACCAAATA+AGG | + | chr6_1:1971441-1971460 | None:intergenic | 45.0% | |
| AAGTCCCTTCCGTTAGGTTT+AGG | - | chr6_1:1971454-1971473 | Msa0868450:intron | 45.0% | |
| AGTCCCTTCCGTTAGGTTTA+GGG | - | chr6_1:1971455-1971474 | Msa0868450:intron | 45.0% | |
| CTAACCCTAAACCTAACGGA+AGG | + | chr6_1:1971462-1971481 | None:intergenic | 45.0% | |
| ! | CTTCCGTTAGGTTTAGGGTT+AGG | - | chr6_1:1971460-1971479 | Msa0868450:intron | 45.0% |
| !! | GCGCTTAGAGCATTTCCTTT+TGG | + | chr6_1:1971516-1971535 | None:intergenic | 45.0% |
| CATGGATAACATGTCCTCTG+TGG | - | chr6_1:1972390-1972409 | Msa0868450:intron | 45.0% | |
| !! | AATTATATTATACTAATTAT+GGG | + | chr6_1:1969754-1969773 | None:intergenic | 5.0% |
| !! | TAATTATATTATACTAATTA+TGG | + | chr6_1:1969755-1969774 | None:intergenic | 5.0% |
| !! | AATAATAAAAATATCAAATA+TGG | + | chr6_1:1971040-1971059 | None:intergenic | 5.0% |
| !! | ATAAATAAATAAATAAAACA+AGG | + | chr6_1:1972206-1972225 | None:intergenic | 5.0% |
| !!! | TTTAAAATAATAATTTTACA+CGG | + | chr6_1:1972482-1972501 | None:intergenic | 5.0% |
| TGCAGTGAAGTGCGTATCGA+GGG | - | chr6_1:1968123-1968142 | Msa0868450:intron | 50.0% | |
| CACACCTCATTGCTGTCTCA+AGG | + | chr6_1:1968849-1968868 | None:intergenic | 50.0% | |
| !! | GATCGAGTTGGACGTTTCGT+TGG | + | chr6_1:1969514-1969533 | None:intergenic | 50.0% |
| GTCGTTCCTGACCTTCATCT+GGG | - | chr6_1:1969589-1969608 | Msa0868450:intron | 50.0% | |
| AGTTCACCCAGATGAAGGTC+AGG | + | chr6_1:1969598-1969617 | None:intergenic | 50.0% | |
| CCACATAGACATAAGGACGG+TGG | + | chr6_1:1969669-1969688 | None:intergenic | 50.0% | |
| CCACCGTCCTTATGTCTATG+TGG | - | chr6_1:1969666-1969685 | Msa0868450:intron | 50.0% | |
| ! | GTCTGGCTTGAAGGATCAGT+TGG | + | chr6_1:1969713-1969732 | None:intergenic | 50.0% |
| CTCTTTCAGTCATCGAGGAG+GGG | - | chr6_1:1970357-1970376 | Msa0868450:three_prime_UTR | 50.0% | |
| AGTTGCAGAGGGGTGATTCT+AGG | + | chr6_1:1970404-1970423 | None:intergenic | 50.0% | |
| GTGATTTCGTCGTCTGAGTG+CGG | - | chr6_1:1970495-1970514 | Msa0868450:CDS | 50.0% | |
| CTGTTGTTCGTCGTCTTGTG+CGG | - | chr6_1:1970522-1970541 | Msa0868450:CDS | 50.0% | |
| CAGAGAAGAACCTTCCTTCC+GGG | + | chr6_1:1971146-1971165 | None:intergenic | 50.0% | |
| GCAGAGAAGAACCTTCCTTC+CGG | + | chr6_1:1971147-1971166 | None:intergenic | 50.0% | |
| GCATGGGTGTCCTTCTATCT+TGG | + | chr6_1:1971219-1971238 | None:intergenic | 50.0% | |
| CTGATACCTACACAGGAGCA+TGG | + | chr6_1:1971236-1971255 | None:intergenic | 50.0% | |
| TTGGCTAAGTCCCTTCCGTT+AGG | - | chr6_1:1971448-1971467 | Msa0868450:intron | 50.0% | |
| ACTCATAGTACGCAGCCTCA+TGG | + | chr6_1:1971892-1971911 | None:intergenic | 50.0% | |
| ATGAGTGCGTGCGAAAGAAG+TGG | - | chr6_1:1971914-1971933 | Msa0868450:intron | 50.0% | |
| TGAGTGCGTGCGAAAGAAGT+GGG | - | chr6_1:1971915-1971934 | Msa0868450:intron | 50.0% | |
| GTGCAGTGAAGTGCGTATCG+AGG | - | chr6_1:1968122-1968141 | Msa0868450:intron | 55.0% | |
| CGTCGTTCCTGACCTTCATC+TGG | - | chr6_1:1969588-1969607 | Msa0868450:intron | 55.0% | |
| TGGATGGTCGACGGCTGATT+TGG | - | chr6_1:1969686-1969705 | Msa0868450:intron | 55.0% | |
| TTTCAGTCATCGAGGAGGGG+TGG | - | chr6_1:1970360-1970379 | Msa0868450:exon | 55.0% | |
| ! | CATCGAGGAGGGGTGGTTTT+AGG | - | chr6_1:1970367-1970386 | Msa0868450:exon | 55.0% |
| TGGGCGTAACGTTGCAGATC+CGG | - | chr6_1:1970607-1970626 | Msa0868450:intron | 55.0% | |
| GAAATTCCTCCTCCGCAACC+CGG | - | chr6_1:1971125-1971144 | Msa0868450:intron | 55.0% | |
| AGAACCTTCCTTCCGGGTTG+CGG | + | chr6_1:1971140-1971159 | None:intergenic | 55.0% | |
| ATCTGTCTCGCACCACCACT+CGG | + | chr6_1:1971366-1971385 | None:intergenic | 55.0% | |
| AAGGGACAAACTGAGCCGAG+AGG | + | chr6_1:1971648-1971667 | None:intergenic | 55.0% | |
| TCGTCAACACCGACGAGTAC+CGG | + | chr6_1:1972058-1972077 | None:intergenic | 55.0% | |
| GGACACCCATGCTCCTGTGT+AGG | - | chr6_1:1971227-1971246 | Msa0868450:intron | 60.0% | |
| ! | GAGTGGTGGTGCGAGACAGA+TGG | - | chr6_1:1971365-1971384 | Msa0868450:intron | 60.0% |
| AGATAACCGTGCCTCCGCAC+CGG | - | chr6_1:1972036-1972055 | Msa0868450:intron | 60.0% | |
| !! | AACACCGACGAGTACCGGTG+CGG | + | chr6_1:1972053-1972072 | None:intergenic | 60.0% |
| TTCCTCCTCCGCAACCCGGA+AGG | - | chr6_1:1971129-1971148 | Msa0868450:intron | 65.0% | |
| TTCCTTCCGGGTTGCGGAGG+AGG | + | chr6_1:1971134-1971153 | None:intergenic | 65.0% | |
| TCCTCCGCAACCCGGAAGGA+AGG | - | chr6_1:1971133-1971152 | Msa0868450:intron | 65.0% | |
| ACCTTCCTTCCGGGTTGCGG+AGG | + | chr6_1:1971137-1971156 | None:intergenic | 65.0% | |
| !! | CGAGTACCGGTGCGGAGGCA+CGG | + | chr6_1:1972045-1972064 | None:intergenic | 70.0% |
| ! | GCCTCCGCACCGGTACTCGT+CGG | - | chr6_1:1972046-1972065 | Msa0868450:intron | 70.0% |
| !! | ACCGACGAGTACCGGTGCGG+AGG | + | chr6_1:1972050-1972069 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1966240 | 1972855 | 1966240 | ID=Msa0868450;Name=Msa0868450 |
| chr6_1 | mRNA | 1966240 | 1972855 | 1966240 | ID=Msa0868450-mRNA-1;Parent=Msa0868450;Name=Msa0868450-mRNA-1;_AED=0.22;_eAED=0.22;_QI=53|0.66|0.85|1|0.83|0.71|7|426|260 |
| chr6_1 | exon | 1966240 | 1966306 | 1966240 | ID=Msa0868450-mRNA-1:exon:590;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1970019 | 1970595 | 1970019 | ID=Msa0868450-mRNA-1:exon:589;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1970692 | 1970791 | 1970692 | ID=Msa0868450-mRNA-1:exon:588;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1970865 | 1970967 | 1970865 | ID=Msa0868450-mRNA-1:exon:587;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1971482 | 1971534 | 1971482 | ID=Msa0868450-mRNA-1:exon:586;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1971651 | 1971707 | 1971651 | ID=Msa0868450-mRNA-1:exon:585;Parent=Msa0868450-mRNA-1 |
| chr6_1 | exon | 1972551 | 1972855 | 1972551 | ID=Msa0868450-mRNA-1:exon:584;Parent=Msa0868450-mRNA-1 |
| chr6_1 | five_prime_UTR | 1972803 | 1972855 | 1972803 | ID=Msa0868450-mRNA-1:five_prime_utr;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1972551 | 1972802 | 1972551 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1971651 | 1971707 | 1971651 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1971482 | 1971534 | 1971482 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1970865 | 1970967 | 1970865 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1970692 | 1970791 | 1970692 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | CDS | 1970378 | 1970595 | 1970378 | ID=Msa0868450-mRNA-1:cds;Parent=Msa0868450-mRNA-1 |
| chr6_1 | three_prime_UTR | 1970019 | 1970377 | 1970019 | ID=Msa0868450-mRNA-1:three_prime_utr;Parent=Msa0868450-mRNA-1 |
| chr6_1 | three_prime_UTR | 1966240 | 1966306 | 1966240 | ID=Msa0868450-mRNA-1:three_prime_utr;Parent=Msa0868450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
