Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969820 | XP_013450738.2 | 95.942 | 345 | 7 | 2 | 5 | 343 | 1 | 344 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969820 | sp|Q40784|AAPC_CENCI | 58.029 | 274 | 110 | 4 | 69 | 337 | 32 | 305 | 2.95e-106 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969820 | A0A072U4Z1 | 96.460 | 339 | 5 | 2 | 11 | 343 | 1 | 338 | 0.0 | 668 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0484650 | Msa0969820 | 0.806988 | 6.295747e-50 | -8.615850e-47 |
| Msa0868450 | Msa0969820 | 0.802153 | 6.420966e-49 | -8.615850e-47 |
| Msa0969600 | Msa0969820 | 0.800489 | 1.407103e-48 | -8.615850e-47 |
| Msa0969820 | Msa0970310 | 0.879085 | 1.661605e-69 | -8.615850e-47 |
| Msa0969820 | Msa1037780 | 0.802040 | 6.775201e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969820 | MtrunA17_Chr6g0449291 | 96.564 | 291 | 4 | 1 | 59 | 343 | 1 | 291 | 0.0 | 580 |
| Msa0969820 | MtrunA17_Chr2g0298101 | 58.537 | 287 | 108 | 5 | 68 | 343 | 19 | 305 | 4.64e-116 | 339 |
| Msa0969820 | MtrunA17_Chr7g0275331 | 56.318 | 277 | 117 | 3 | 65 | 337 | 18 | 294 | 1.16e-112 | 330 |
| Msa0969820 | MtrunA17_Chr5g0396951 | 53.521 | 284 | 129 | 3 | 61 | 341 | 15 | 298 | 5.03e-111 | 326 |
| Msa0969820 | MtrunA17_Chr4g0049381 | 55.596 | 277 | 119 | 3 | 65 | 337 | 18 | 294 | 1.03e-109 | 323 |
| Msa0969820 | MtrunA17_Chr4g0000451 | 64.024 | 164 | 56 | 2 | 181 | 341 | 6 | 169 | 9.64e-71 | 219 |
| Msa0969820 | MtrunA17_Chr5g0404381 | 31.469 | 286 | 178 | 7 | 59 | 341 | 39 | 309 | 7.48e-35 | 129 |
| Msa0969820 | MtrunA17_Chr4g0000441 | 43.066 | 137 | 77 | 1 | 42 | 177 | 7 | 143 | 1.76e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969820 | AT5G14500.1 | 66.554 | 296 | 92 | 2 | 59 | 347 | 1 | 296 | 3.77e-144 | 410 |
| Msa0969820 | AT3G01590.1 | 65.541 | 296 | 95 | 2 | 59 | 347 | 1 | 296 | 1.96e-141 | 403 |
| Msa0969820 | AT3G01590.2 | 65.541 | 296 | 95 | 2 | 59 | 347 | 1 | 296 | 1.96e-141 | 403 |
| Msa0969820 | AT5G14500.2 | 61.830 | 317 | 89 | 3 | 59 | 343 | 1 | 317 | 1.02e-137 | 395 |
| Msa0969820 | AT5G57330.1 | 59.643 | 280 | 106 | 5 | 68 | 341 | 15 | 293 | 8.23e-114 | 333 |
| Msa0969820 | AT3G61610.2 | 52.203 | 295 | 131 | 4 | 63 | 347 | 10 | 304 | 6.91e-108 | 318 |
| Msa0969820 | AT3G61610.1 | 52.203 | 295 | 131 | 4 | 63 | 347 | 16 | 310 | 9.31e-108 | 318 |
| Msa0969820 | AT4G23730.1 | 53.546 | 282 | 126 | 3 | 61 | 337 | 15 | 296 | 3.71e-106 | 314 |
| Msa0969820 | AT4G23730.3 | 52.778 | 288 | 125 | 4 | 61 | 337 | 15 | 302 | 3.20e-104 | 309 |
| Msa0969820 | AT4G23730.2 | 55.598 | 259 | 110 | 3 | 84 | 337 | 3 | 261 | 3.04e-100 | 297 |
| Msa0969820 | AT4G25900.1 | 48.897 | 272 | 133 | 4 | 68 | 337 | 38 | 305 | 1.26e-89 | 272 |
| Msa0969820 | AT5G66530.4 | 31.469 | 286 | 170 | 9 | 61 | 339 | 8 | 274 | 2.23e-34 | 128 |
| Msa0969820 | AT5G66530.1 | 31.469 | 286 | 170 | 9 | 61 | 339 | 36 | 302 | 4.87e-34 | 127 |
| Msa0969820 | AT5G66530.2 | 31.469 | 286 | 170 | 9 | 61 | 339 | 36 | 302 | 4.87e-34 | 127 |
| Msa0969820 | AT5G66530.3 | 31.469 | 286 | 170 | 9 | 61 | 339 | 36 | 302 | 4.87e-34 | 127 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAATTTCATGTTCTTTA+AGG | 0.090345 | 6_4:+1233465 | None:intergenic |
| ATGTTCTTTATCGTAATTTA+TGG | 0.093751 | 6_4:+1233501 | None:intergenic |
| TTCAAAGGCATCTGTATAAT+TGG | 0.207577 | 6_4:+1236109 | None:intergenic |
| GGCTAAAGCTCTACCTGATT+TGG | 0.261406 | 6_4:-1234036 | Msa0969820:CDS |
| AAACATAAAGTGAGGATAAA+AGG | 0.265244 | 6_4:+1233439 | None:intergenic |
| TTTCTACTGAACAGGCTAAA+TGG | 0.267382 | 6_4:-1235188 | Msa0969820:intron |
| GATCCTCGTAGAGTTCTTTA+TGG | 0.280881 | 6_4:-1233878 | Msa0969820:exon |
| AGACTATAGTTTCTCTTCAT+AGG | 0.288061 | 6_4:-1233749 | Msa0969820:three_prime_UTR |
| TGGTTTCAGGTGCTTCTATA+TGG | 0.300749 | 6_4:-1235434 | Msa0969820:intron |
| TCACATGGCTTCAAGATAAT+AGG | 0.304789 | 6_4:+1233960 | None:intergenic |
| AGTGAAAATGCAAAAGAAAA+TGG | 0.307262 | 6_4:+1234601 | None:intergenic |
| CATCTGGAAGTGAATTCTTC+TGG | 0.316198 | 6_4:+1234183 | None:intergenic |
| ATGGAATCCATGGAATAAAA+AGG | 0.317111 | 6_4:-1234057 | Msa0969820:CDS |
| GCTGATGCAATTACATTTGA+TGG | 0.318284 | 6_4:-1234357 | Msa0969820:CDS |
| ATGGAGGGCATATTGTTTCT+TGG | 0.327788 | 6_4:-1235415 | Msa0969820:CDS |
| GAAACTATAGTCTATATATA+TGG | 0.350330 | 6_4:+1233759 | None:intergenic |
| ATGAAATTGAGAACATTGTT+TGG | 0.367606 | 6_4:-1236232 | Msa0969820:CDS |
| CTTTCACTCTTCTCCAATCC+AGG | 0.376719 | 6_4:+1236188 | None:intergenic |
| CACAAGGCCACAAAATTTGC+AGG | 0.383635 | 6_4:+1233410 | None:intergenic |
| ACAGATGAATGATTGTCTAT+TGG | 0.398461 | 6_4:+1234917 | None:intergenic |
| AAGCTATTGCAGTGGACAAT+TGG | 0.406866 | 6_4:-1233900 | Msa0969820:CDS |
| ATATTATGTTGATGTTGTTA+TGG | 0.408797 | 6_4:-1236267 | Msa0969820:CDS |
| AACATCTCTTAATTATTGTA+AGG | 0.410691 | 6_4:+1233642 | None:intergenic |
| GCTAAAGCTCTACCTGATTT+GGG | 0.410922 | 6_4:-1234035 | Msa0969820:CDS |
| TTTCTTCTCATGATCTATGA+TGG | 0.415275 | 6_4:+1234220 | None:intergenic |
| TAATCATCAACTCCCAAATC+AGG | 0.419942 | 6_4:+1234023 | None:intergenic |
| GACTATAGTTTCTCTTCATA+GGG | 0.421777 | 6_4:-1233748 | Msa0969820:three_prime_UTR |
| CACATGGAATGACAAGAAAC+AGG | 0.427401 | 6_4:-1234976 | Msa0969820:CDS |
| TGAGTAATTCAAGAGCATTA+AGG | 0.428845 | 6_4:-1236153 | Msa0969820:CDS |
| GCTCTTGAATTACTCACAAA+TGG | 0.432943 | 6_4:+1236160 | None:intergenic |
| AATGTATTTCAAGACAAAGA+TGG | 0.433363 | 6_4:-1236088 | Msa0969820:CDS |
| AACTAATAGTAACCTGCATC+TGG | 0.440068 | 6_4:+1234167 | None:intergenic |
| AATCTTCAGAGAATTGAAAC+TGG | 0.444122 | 6_4:-1233550 | Msa0969820:three_prime_UTR |
| GGATCAGTCAATACAATCCT+TGG | 0.445366 | 6_4:+1236061 | None:intergenic |
| AAGAAACAGGATGTGGTCAT+TGG | 0.451987 | 6_4:-1234963 | Msa0969820:CDS |
| TTTCAGTGAACTGTAATTGA+TGG | 0.453083 | 6_4:-1233854 | Msa0969820:three_prime_UTR |
| GATTTGATATTAAAGTCAAC+AGG | 0.453233 | 6_4:-1234893 | Msa0969820:CDS |
| TAATTATTGTAAGGTGGAAA+AGG | 0.455244 | 6_4:+1233651 | None:intergenic |
| ACCTCAGCTGATGAACCATT+TGG | 0.455672 | 6_4:+1236040 | None:intergenic |
| TTGTCTTGAAATACATTCAA+AGG | 0.463676 | 6_4:+1236094 | None:intergenic |
| GTGATAAGAGTGCAGTTGTA+TGG | 0.466146 | 6_4:-1234076 | Msa0969820:intron |
| GTTGATGTTGTTATGGTGGA+TGG | 0.474269 | 6_4:-1236260 | Msa0969820:CDS |
| TTATCAGTGTTTCTGACTCT+AGG | 0.478385 | 6_4:+1234628 | None:intergenic |
| ACATATGATGCATACCTTCG+TGG | 0.480527 | 6_4:+1234854 | None:intergenic |
| ATTGGTTGCAGAACCTGGAT+TGG | 0.488869 | 6_4:-1236201 | Msa0969820:CDS |
| CAGATCAAGATTCACAGAAC+AGG | 0.492587 | 6_4:-1234379 | Msa0969820:CDS |
| GTGTTGCAGTTTGGTGATGT+TGG | 0.494871 | 6_4:-1235010 | Msa0969820:intron |
| TCTTGAAGCCATGTGAAGAA+TGG | 0.498380 | 6_4:-1233953 | Msa0969820:CDS |
| AAGAATTCACTTCCAGATGC+AGG | 0.502151 | 6_4:-1234179 | Msa0969820:intron |
| TTCAGGTGCTTCTATATGGA+GGG | 0.504410 | 6_4:-1235430 | Msa0969820:intron |
| TATGTATCGTATCCACCTAT+CGG | 0.515165 | 6_4:+1233678 | None:intergenic |
| GATGAATGATTGTCTATTGG+AGG | 0.517054 | 6_4:+1234920 | None:intergenic |
| TGCAATTACATTTGATGGAG+AGG | 0.525933 | 6_4:-1234352 | Msa0969820:intron |
| TAGCCCTTCCATTCTTCACA+TGG | 0.529103 | 6_4:+1233945 | None:intergenic |
| GTGCAGTTGTATGGAATCCA+TGG | 0.531959 | 6_4:-1234067 | Msa0969820:intron |
| ATCTCTTAATTATTGTAAGG+TGG | 0.534200 | 6_4:+1233645 | None:intergenic |
| ATTGTATTGACTGATCCAAA+TGG | 0.534205 | 6_4:-1236055 | Msa0969820:CDS |
| ATCAATGTCATTCCGATAGG+TGG | 0.535117 | 6_4:-1233690 | Msa0969820:three_prime_UTR |
| TTGTTTCTTGGAAGAATCAA+AGG | 0.540471 | 6_4:-1235403 | Msa0969820:CDS |
| TCTATTGGAGGTAGTGGTGA+AGG | 0.541685 | 6_4:+1234932 | None:intergenic |
| TTATGTTGATGTTGTTATGG+TGG | 0.541988 | 6_4:-1236264 | Msa0969820:CDS |
| TGATTGTCTATTGGAGGTAG+TGG | 0.547520 | 6_4:+1234926 | None:intergenic |
| GTATATCAGCTTGCTTCGCA+CGG | 0.554586 | 6_4:-1235140 | Msa0969820:CDS |
| GAAGCCATGTGAAGAATGGA+AGG | 0.558681 | 6_4:-1233949 | Msa0969820:CDS |
| TGCAGTGAAGTGCGTATCGA+GGG | 0.559173 | 6_4:-1234438 | Msa0969820:intron |
| CTATTGGAGGTAGTGGTGAA+GGG | 0.565619 | 6_4:+1234933 | None:intergenic |
| CACACCTCATTGCTGTCTCA+AGG | 0.577373 | 6_4:+1233717 | None:intergenic |
| CTTAGGATATCTCTAAGTGC+TGG | 0.578744 | 6_4:-1234667 | Msa0969820:CDS |
| TATATCAGCTTGCTTCGCAC+GGG | 0.583439 | 6_4:-1235139 | Msa0969820:intron |
| TTTCAGGTGCTTCTATATGG+AGG | 0.583536 | 6_4:-1235431 | Msa0969820:intron |
| AAGACAAAGATGGATTGCCA+AGG | 0.592129 | 6_4:-1236078 | Msa0969820:CDS |
| TTGATCAATGTCATTCCGAT+AGG | 0.612608 | 6_4:-1233693 | Msa0969820:three_prime_UTR |
| GAATGACAAGAAACAGGATG+TGG | 0.614717 | 6_4:-1234970 | Msa0969820:CDS |
| TTCTTGGAAGAATCAAAGGA+AGG | 0.617206 | 6_4:-1235399 | Msa0969820:CDS |
| GTGCAGTGAAGTGCGTATCG+AGG | 0.625522 | 6_4:-1234439 | Msa0969820:intron |
| TCCAAATGGTTCATCAGCTG+AGG | 0.630236 | 6_4:-1236041 | Msa0969820:intron |
| AATAGACAATCATTCATCTG+TGG | 0.635597 | 6_4:-1234915 | Msa0969820:CDS |
| GTTTCATCAAGCTATTGCAG+TGG | 0.637223 | 6_4:-1233908 | Msa0969820:CDS |
| AAACAACATAAAGCAATCAG+AGG | 0.644716 | 6_4:-1235165 | Msa0969820:CDS |
| GGTTCTCCAAACATAAAGTG+AGG | 0.647546 | 6_4:+1233431 | None:intergenic |
| CAACATAAAGCAATCAGAGG+AGG | 0.656588 | 6_4:-1235162 | Msa0969820:CDS |
| AAAACATGTTCATGATCACA+AGG | 0.661656 | 6_4:+1233394 | None:intergenic |
| AAGCCATGTGAAGAATGGAA+GGG | 0.663507 | 6_4:-1233948 | Msa0969820:CDS |
| GTTGGTTCACTTGAGACACA+TGG | 0.677188 | 6_4:-1234992 | Msa0969820:CDS |
| ATTGCCTTGAGACAGCAATG+AGG | 0.718659 | 6_4:-1233721 | Msa0969820:three_prime_UTR |
| TTGACTTAAAGACGCCACGA+AGG | 0.719729 | 6_4:-1234868 | Msa0969820:intron |
| AAACCATAAAGAACTCTACG+AGG | 0.756087 | 6_4:+1233875 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAAAATACTATCATTTT+AGG | + | chr6_4:1233743-1233762 | None:intergenic | 15.0% |
| !!! | TTTGACTTAAATTTATCTTT+TGG | + | chr6_4:1233865-1233884 | None:intergenic | 15.0% |
| !! | TATAAATAACCAAAATACTA+AGG | + | chr6_4:1235226-1235245 | None:intergenic | 15.0% |
| !! | ATATTATGTTGATGTTGTTA+TGG | - | chr6_4:1233449-1233468 | Msa0969820:three_prime_UTR | 20.0% |
| !! | AAAGATTATTATTCAAGGTA+TGG | + | chr6_4:1234082-1234101 | None:intergenic | 20.0% |
| !! | AGTCAAAAGATTATTATTCA+AGG | + | chr6_4:1234087-1234106 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTCAAAATTATA+AGG | + | chr6_4:1234160-1234179 | None:intergenic | 20.0% |
| !! | TTCCATCATCAAATATTATT+TGG | - | chr6_4:1234183-1234202 | Msa0969820:CDS | 20.0% |
| !!! | TTGTCTAAGTTTTAAAATGA+TGG | - | chr6_4:1234216-1234235 | Msa0969820:CDS | 20.0% |
| !!! | AATAAAGCTTTTGAAACATA+TGG | - | chr6_4:1234262-1234281 | Msa0969820:intron | 20.0% |
| !! | AAAAAAATTCTCAACAAGTA+AGG | + | chr6_4:1234656-1234675 | None:intergenic | 20.0% |
| !! | GAAACTATAGTCTATATATA+TGG | + | chr6_4:1235960-1235979 | None:intergenic | 20.0% |
| !! | AACATCTCTTAATTATTGTA+AGG | + | chr6_4:1236077-1236096 | None:intergenic | 20.0% |
| !! | ATGTTCTTTATCGTAATTTA+TGG | + | chr6_4:1236218-1236237 | None:intergenic | 20.0% |
| ! | ATGAAATTGAGAACATTGTT+TGG | - | chr6_4:1233484-1233503 | Msa0969820:intron | 25.0% |
| !!! | CATTGTTTGGTTTTTTTGAT+TGG | - | chr6_4:1233497-1233516 | Msa0969820:intron | 25.0% |
| ! | TTGTCTTGAAATACATTCAA+AGG | + | chr6_4:1233625-1233644 | None:intergenic | 25.0% |
| ! | AATGTATTTCAAGACAAAGA+TGG | - | chr6_4:1233628-1233647 | Msa0969820:three_prime_UTR | 25.0% |
| ! | AGTGATCTTAATGGAAAAAT+TGG | - | chr6_4:1233713-1233732 | Msa0969820:three_prime_UTR | 25.0% |
| !!! | TTCAGAAATTTGTGTTACTT+TGG | - | chr6_4:1234055-1234074 | Msa0969820:CDS | 25.0% |
| ! | GTTAGTCAAAATTATAAGGA+AGG | + | chr6_4:1234156-1234175 | None:intergenic | 25.0% |
| ! | GTCCAAATAATATTTGATGA+TGG | + | chr6_4:1234188-1234207 | None:intergenic | 25.0% |
| ! | TCATCAAATATTATTTGGAC+CGG | - | chr6_4:1234188-1234207 | Msa0969820:CDS | 25.0% |
| ! | TAAAACTTAGACAATCATAC+CGG | + | chr6_4:1234210-1234229 | None:intergenic | 25.0% |
| !! | AAATTTGTCAGTGGTTTTTA+TGG | - | chr6_4:1234432-1234451 | Msa0969820:CDS | 25.0% |
| !!! | GTAATTTTTTTCCCTAGAAT+CGG | + | chr6_4:1234468-1234487 | None:intergenic | 25.0% |
| ! | AAAAAATTACCCTAGTAATG+CGG | - | chr6_4:1234478-1234497 | Msa0969820:intron | 25.0% |
| ! | TTCATCATATACACAACATA+TGG | - | chr6_4:1234608-1234627 | Msa0969820:CDS | 25.0% |
| ! | TAGTTGAATATCAACAAGTT+TGG | + | chr6_4:1234679-1234698 | None:intergenic | 25.0% |
| ! | GATTTGATATTAAAGTCAAC+AGG | - | chr6_4:1234823-1234842 | Msa0969820:intron | 25.0% |
| ! | ACATCATGAAAGTAATTGAA+TGG | + | chr6_4:1234963-1234982 | None:intergenic | 25.0% |
| ! | AGTGAAAATGCAAAAGAAAA+TGG | + | chr6_4:1235118-1235137 | None:intergenic | 25.0% |
| !! | TTTTATCTGTATCAGATATC+AGG | - | chr6_4:1235146-1235165 | Msa0969820:CDS | 25.0% |
| ! | GTATATATGAAAGAATGTCA+TGG | + | chr6_4:1235403-1235422 | None:intergenic | 25.0% |
| !!! | CTATGATGGCAATTTTATTT+GGG | + | chr6_4:1235485-1235504 | None:intergenic | 25.0% |
| !! | TCTATGATGGCAATTTTATT+TGG | + | chr6_4:1235486-1235505 | None:intergenic | 25.0% |
| ! | TAATTATTGTAAGGTGGAAA+AGG | + | chr6_4:1236068-1236087 | None:intergenic | 25.0% |
| ! | ATCTCTTAATTATTGTAAGG+TGG | + | chr6_4:1236074-1236093 | None:intergenic | 25.0% |
| !!! | AATTCTCTGAAGATTTTCAT+TGG | + | chr6_4:1236161-1236180 | None:intergenic | 25.0% |
| ! | GAACAATTTCATGTTCTTTA+AGG | + | chr6_4:1236228-1236247 | None:intergenic | 25.0% |
| ! | AAACATAAAGTGAGGATAAA+AGG | + | chr6_4:1236280-1236299 | None:intergenic | 25.0% |
| !! | TTTTATCCTCACTTTATGTT+TGG | - | chr6_4:1236279-1236298 | Msa0969820:exon | 25.0% |
| TTATGTTGATGTTGTTATGG+TGG | - | chr6_4:1233452-1233471 | Msa0969820:three_prime_UTR | 30.0% | |
| !! | TGAGTAATTCAAGAGCATTA+AGG | - | chr6_4:1233563-1233582 | Msa0969820:three_prime_UTR | 30.0% |
| !! | TTCAAAGGCATCTGTATAAT+TGG | + | chr6_4:1233610-1233629 | None:intergenic | 30.0% |
| !! | ATTGTATTGACTGATCCAAA+TGG | - | chr6_4:1233661-1233680 | Msa0969820:three_prime_UTR | 30.0% |
| ! | TCTTTTGCTAGTGATCTTAA+TGG | - | chr6_4:1233704-1233723 | Msa0969820:three_prime_UTR | 30.0% |
| TTGTGTAGCTCAACATAAAT+AGG | - | chr6_4:1233993-1234012 | Msa0969820:CDS | 30.0% | |
| !!! | CTTTTGAAACATATGGTTTC+AGG | - | chr6_4:1234269-1234288 | Msa0969820:intron | 30.0% |
| ! | TTGTTTCTTGGAAGAATCAA+AGG | - | chr6_4:1234313-1234332 | Msa0969820:intron | 30.0% |
| AAAAACCACTGACAAATTTG+TGG | + | chr6_4:1234431-1234450 | None:intergenic | 30.0% | |
| !!! | AGGTATTTTTTCTACTGAAC+AGG | - | chr6_4:1234520-1234539 | Msa0969820:intron | 30.0% |
| AAACAACATAAAGCAATCAG+AGG | - | chr6_4:1234551-1234570 | Msa0969820:intron | 30.0% | |
| ACAGATGAATGATTGTCTAT+TGG | + | chr6_4:1234802-1234821 | None:intergenic | 30.0% | |
| AATAGACAATCATTCATCTG+TGG | - | chr6_4:1234801-1234820 | Msa0969820:intron | 30.0% | |
| AGGAAAAAAGTGAAAATCAG+TGG | + | chr6_4:1235185-1235204 | None:intergenic | 30.0% | |
| ! | ATCATCATGCCTTAGTATTT+TGG | - | chr6_4:1235214-1235233 | Msa0969820:intron | 30.0% |
| ! | TAGCTCTCTAAACATTGTTT+TGG | - | chr6_4:1235424-1235443 | Msa0969820:CDS | 30.0% |
| TTTCTTCTCATGATCTATGA+TGG | + | chr6_4:1235499-1235518 | None:intergenic | 30.0% | |
| ATGCAGGTTACTATTAGTTA+GGG | - | chr6_4:1235553-1235572 | Msa0969820:intron | 30.0% | |
| ATGGAATCCATGGAATAAAA+AGG | - | chr6_4:1235659-1235678 | Msa0969820:intron | 30.0% | |
| TTTCAGTGAACTGTAATTGA+TGG | - | chr6_4:1235862-1235881 | Msa0969820:intron | 30.0% | |
| AGACTATAGTTTCTCTTCAT+AGG | - | chr6_4:1235967-1235986 | Msa0969820:intron | 30.0% | |
| GACTATAGTTTCTCTTCATA+GGG | - | chr6_4:1235968-1235987 | Msa0969820:intron | 30.0% | |
| ! | TTAAGAGATGTTTTGCTTCA+TGG | - | chr6_4:1236085-1236104 | Msa0969820:CDS | 30.0% |
| AATCTTCAGAGAATTGAAAC+TGG | - | chr6_4:1236166-1236185 | Msa0969820:CDS | 30.0% | |
| AAAACATGTTCATGATCACA+AGG | + | chr6_4:1236325-1236344 | None:intergenic | 30.0% | |
| GCTCTTGAATTACTCACAAA+TGG | + | chr6_4:1233559-1233578 | None:intergenic | 35.0% | |
| CATTCTATGCTTACTTGCTT+TGG | - | chr6_4:1234119-1234138 | Msa0969820:intron | 35.0% | |
| TTCTTGGAAGAATCAAAGGA+AGG | - | chr6_4:1234317-1234336 | Msa0969820:intron | 35.0% | |
| !!! | ACTGCTTTTTATGAGCAGTA+AGG | - | chr6_4:1234344-1234363 | Msa0969820:intron | 35.0% |
| !! | GTTTTAAACCTCCGATTCTA+GGG | - | chr6_4:1234454-1234473 | Msa0969820:intron | 35.0% |
| !!! | ATTTTTTTCCCTAGAATCGG+AGG | + | chr6_4:1234465-1234484 | None:intergenic | 35.0% |
| GACTATCGAGTTTGATCAAT+AGG | - | chr6_4:1234500-1234519 | Msa0969820:intron | 35.0% | |
| TTTCTACTGAACAGGCTAAA+TGG | - | chr6_4:1234528-1234547 | Msa0969820:intron | 35.0% | |
| CTCAACAAGTAAGGAGAAAA+CGG | + | chr6_4:1234647-1234666 | None:intergenic | 35.0% | |
| TACAATTCTGTGTTGCAGTT+TGG | - | chr6_4:1234697-1234716 | Msa0969820:intron | 35.0% | |
| GATGAATGATTGTCTATTGG+AGG | + | chr6_4:1234799-1234818 | None:intergenic | 35.0% | |
| CTTTATGTTGAAGATGTCTC+TGG | - | chr6_4:1234895-1234914 | Msa0969820:CDS | 35.0% | |
| !!! | GTATATGCAGTTTTGAGTTG+AGG | - | chr6_4:1235026-1235045 | Msa0969820:intron | 35.0% |
| ! | TTATCAGTGTTTCTGACTCT+AGG | + | chr6_4:1235091-1235110 | None:intergenic | 35.0% |
| GCTGATGCAATTACATTTGA+TGG | - | chr6_4:1235359-1235378 | Msa0969820:intron | 35.0% | |
| TGCAATTACATTTGATGGAG+AGG | - | chr6_4:1235364-1235383 | Msa0969820:intron | 35.0% | |
| ATTACATTTGATGGAGAGGT+AGG | - | chr6_4:1235368-1235387 | Msa0969820:intron | 35.0% | |
| !!! | GTTTTGGTTTACCTTGTAGA+CGG | - | chr6_4:1235440-1235459 | Msa0969820:intron | 35.0% |
| AACTAATAGTAACCTGCATC+TGG | + | chr6_4:1235552-1235571 | None:intergenic | 35.0% | |
| GATGCAGGTTACTATTAGTT+AGG | - | chr6_4:1235552-1235571 | Msa0969820:intron | 35.0% | |
| !! | GCTTTAGCCTTTTTATTCCA+TGG | + | chr6_4:1235669-1235688 | None:intergenic | 35.0% |
| TAATCATCAACTCCCAAATC+AGG | + | chr6_4:1235696-1235715 | None:intergenic | 35.0% | |
| TCACATGGCTTCAAGATAAT+AGG | + | chr6_4:1235759-1235778 | None:intergenic | 35.0% | |
| AAACCATAAAGAACTCTACG+AGG | + | chr6_4:1235844-1235863 | None:intergenic | 35.0% | |
| TTGATCAATGTCATTCCGAT+AGG | - | chr6_4:1236023-1236042 | Msa0969820:intron | 35.0% | |
| TATGTATCGTATCCACCTAT+CGG | + | chr6_4:1236041-1236060 | None:intergenic | 35.0% | |
| ! | GTTGATGTTGTTATGGTGGA+TGG | - | chr6_4:1233456-1233475 | Msa0969820:three_prime_UTR | 40.0% |
| !! | TTTTGATTGGTTGCAGAACC+TGG | - | chr6_4:1233510-1233529 | Msa0969820:three_prime_UTR | 40.0% |
| !! | AAGACAAAGATGGATTGCCA+AGG | - | chr6_4:1233638-1233657 | Msa0969820:three_prime_UTR | 40.0% |
| GGATCAGTCAATACAATCCT+TGG | + | chr6_4:1233658-1233677 | None:intergenic | 40.0% | |
| ! | TAACACATCAAGAGCGTGTT+TGG | + | chr6_4:1233965-1233984 | None:intergenic | 40.0% |
| ! | TGGTTTCAGGTGCTTCTATA+TGG | - | chr6_4:1234282-1234301 | Msa0969820:intron | 40.0% |
| ! | TTTCAGGTGCTTCTATATGG+AGG | - | chr6_4:1234285-1234304 | Msa0969820:intron | 40.0% |
| TTCAGGTGCTTCTATATGGA+GGG | - | chr6_4:1234286-1234305 | Msa0969820:intron | 40.0% | |
| ! | ATGGAGGGCATATTGTTTCT+TGG | - | chr6_4:1234301-1234320 | Msa0969820:intron | 40.0% |
| GACTTCCACAAATTTGTCAG+TGG | - | chr6_4:1234423-1234442 | Msa0969820:CDS | 40.0% | |
| !!! | GGTTTTAAACCTCCGATTCT+AGG | - | chr6_4:1234453-1234472 | Msa0969820:intron | 40.0% |
| CAACATAAAGCAATCAGAGG+AGG | - | chr6_4:1234554-1234573 | Msa0969820:intron | 40.0% | |
| CACATGGAATGACAAGAAAC+AGG | - | chr6_4:1234740-1234759 | Msa0969820:intron | 40.0% | |
| GAATGACAAGAAACAGGATG+TGG | - | chr6_4:1234746-1234765 | Msa0969820:intron | 40.0% | |
| AAGAAACAGGATGTGGTCAT+TGG | - | chr6_4:1234753-1234772 | Msa0969820:intron | 40.0% | |
| TGATTGTCTATTGGAGGTAG+TGG | + | chr6_4:1234793-1234812 | None:intergenic | 40.0% | |
| ACATATGATGCATACCTTCG+TGG | + | chr6_4:1234865-1234884 | None:intergenic | 40.0% | |
| GTTGTGTCAGTTATACGTGT+CGG | + | chr6_4:1234924-1234943 | None:intergenic | 40.0% | |
| ACTTTCATGATGTGTGTCGT+CGG | - | chr6_4:1234970-1234989 | Msa0969820:CDS | 40.0% | |
| CTTAGGATATCTCTAAGTGC+TGG | - | chr6_4:1235049-1235068 | Msa0969820:intron | 40.0% | |
| GGCATGATGATCATGTAGAA+AGG | + | chr6_4:1235205-1235224 | None:intergenic | 40.0% | |
| CAGATCAAGATTCACAGAAC+AGG | - | chr6_4:1235337-1235356 | Msa0969820:intron | 40.0% | |
| CATCTGGAAGTGAATTCTTC+TGG | + | chr6_4:1235536-1235555 | None:intergenic | 40.0% | |
| AAGAATTCACTTCCAGATGC+AGG | - | chr6_4:1235537-1235556 | Msa0969820:intron | 40.0% | |
| ! | GTGATAAGAGTGCAGTTGTA+TGG | - | chr6_4:1235640-1235659 | Msa0969820:intron | 40.0% |
| GCTAAAGCTCTACCTGATTT+GGG | - | chr6_4:1235681-1235700 | Msa0969820:intron | 40.0% | |
| TCTTGAAGCCATGTGAAGAA+TGG | - | chr6_4:1235763-1235782 | Msa0969820:intron | 40.0% | |
| AAGCCATGTGAAGAATGGAA+GGG | - | chr6_4:1235768-1235787 | Msa0969820:intron | 40.0% | |
| GTTTCATCAAGCTATTGCAG+TGG | - | chr6_4:1235808-1235827 | Msa0969820:intron | 40.0% | |
| AAGCTATTGCAGTGGACAAT+TGG | - | chr6_4:1235816-1235835 | Msa0969820:intron | 40.0% | |
| GATCCTCGTAGAGTTCTTTA+TGG | - | chr6_4:1235838-1235857 | Msa0969820:intron | 40.0% | |
| ATCAATGTCATTCCGATAGG+TGG | - | chr6_4:1236026-1236045 | Msa0969820:intron | 40.0% | |
| GGTTCTCCAAACATAAAGTG+AGG | + | chr6_4:1236288-1236307 | None:intergenic | 40.0% | |
| ! | TGGAGAACCTGCAAATTTTG+TGG | - | chr6_4:1236299-1236318 | Msa0969820:five_prime_UTR | 40.0% |
| ATTGGTTGCAGAACCTGGAT+TGG | - | chr6_4:1233515-1233534 | Msa0969820:three_prime_UTR | 45.0% | |
| CTTTCACTCTTCTCCAATCC+AGG | + | chr6_4:1233531-1233550 | None:intergenic | 45.0% | |
| TCCAAATGGTTCATCAGCTG+AGG | - | chr6_4:1233675-1233694 | Msa0969820:three_prime_UTR | 45.0% | |
| ACCTCAGCTGATGAACCATT+TGG | + | chr6_4:1233679-1233698 | None:intergenic | 45.0% | |
| AATGGTTCATCAGCTGAGGT+TGG | - | chr6_4:1233679-1233698 | Msa0969820:three_prime_UTR | 45.0% | |
| CTCGATAGTCCGCATTACTA+GGG | + | chr6_4:1234490-1234509 | None:intergenic | 45.0% | |
| ACTCGATAGTCCGCATTACT+AGG | + | chr6_4:1234491-1234510 | None:intergenic | 45.0% | |
| ! | GTATATCAGCTTGCTTCGCA+CGG | - | chr6_4:1234576-1234595 | Msa0969820:CDS | 45.0% |
| ! | TATATCAGCTTGCTTCGCAC+GGG | - | chr6_4:1234577-1234596 | Msa0969820:CDS | 45.0% |
| !! | GTGTTGCAGTTTGGTGATGT+TGG | - | chr6_4:1234706-1234725 | Msa0969820:intron | 45.0% |
| ! | GTTGGTTCACTTGAGACACA+TGG | - | chr6_4:1234724-1234743 | Msa0969820:intron | 45.0% |
| ! | CTATTGGAGGTAGTGGTGAA+GGG | + | chr6_4:1234786-1234805 | None:intergenic | 45.0% |
| ! | TCTATTGGAGGTAGTGGTGA+AGG | + | chr6_4:1234787-1234806 | None:intergenic | 45.0% |
| TTGACTTAAAGACGCCACGA+AGG | - | chr6_4:1234848-1234867 | Msa0969820:intron | 45.0% | |
| !!! | GCAGTTTTGAGTTGAGGCTT+AGG | - | chr6_4:1235032-1235051 | Msa0969820:intron | 45.0% |
| GTATACTCTGTCCGTCTACA+AGG | + | chr6_4:1235454-1235473 | None:intergenic | 45.0% | |
| GTGCAGTTGTATGGAATCCA+TGG | - | chr6_4:1235649-1235668 | Msa0969820:intron | 45.0% | |
| GGCTAAAGCTCTACCTGATT+TGG | - | chr6_4:1235680-1235699 | Msa0969820:intron | 45.0% | |
| GAAGCCATGTGAAGAATGGA+AGG | - | chr6_4:1235767-1235786 | Msa0969820:intron | 45.0% | |
| TAGCCCTTCCATTCTTCACA+TGG | + | chr6_4:1235774-1235793 | None:intergenic | 45.0% | |
| ATTGCCTTGAGACAGCAATG+AGG | - | chr6_4:1235995-1236014 | Msa0969820:intron | 45.0% | |
| CACAAGGCCACAAAATTTGC+AGG | + | chr6_4:1236309-1236328 | None:intergenic | 45.0% | |
| TGCAGTGAAGTGCGTATCGA+GGG | - | chr6_4:1235278-1235297 | Msa0969820:intron | 50.0% | |
| CACACCTCATTGCTGTCTCA+AGG | + | chr6_4:1236002-1236021 | None:intergenic | 50.0% | |
| GTGCAGTGAAGTGCGTATCG+AGG | - | chr6_4:1235277-1235296 | Msa0969820:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1233392 | 1236346 | 1233392 | ID=Msa0969820;Name=Msa0969820 |
| chr6_4 | mRNA | 1233392 | 1236346 | 1233392 | ID=Msa0969820-mRNA-1;Parent=Msa0969820;Name=Msa0969820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=53|1|1|1|0.87|0.77|9|476|355 |
| chr6_4 | exon | 1233392 | 1233484 | 1233392 | ID=Msa0969820-mRNA-1:exon:712;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1233507 | 1234083 | 1233507 | ID=Msa0969820-mRNA-1:exon:711;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1234180 | 1234279 | 1234180 | ID=Msa0969820-mRNA-1:exon:710;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1234353 | 1234455 | 1234353 | ID=Msa0969820-mRNA-1:exon:709;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1234571 | 1234702 | 1234571 | ID=Msa0969820-mRNA-1:exon:708;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1234869 | 1235023 | 1234869 | ID=Msa0969820-mRNA-1:exon:707;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1235140 | 1235196 | 1235140 | ID=Msa0969820-mRNA-1:exon:706;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1235373 | 1235447 | 1235373 | ID=Msa0969820-mRNA-1:exon:705;Parent=Msa0969820-mRNA-1 |
| chr6_4 | exon | 1236042 | 1236346 | 1236042 | ID=Msa0969820-mRNA-1:exon:704;Parent=Msa0969820-mRNA-1 |
| chr6_4 | five_prime_UTR | 1236294 | 1236346 | 1236294 | ID=Msa0969820-mRNA-1:five_prime_utr;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1236042 | 1236293 | 1236042 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1235373 | 1235447 | 1235373 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1235140 | 1235196 | 1235140 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1234869 | 1235023 | 1234869 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1234571 | 1234702 | 1234571 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1234353 | 1234455 | 1234353 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1234180 | 1234279 | 1234180 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | CDS | 1233890 | 1234083 | 1233890 | ID=Msa0969820-mRNA-1:cds;Parent=Msa0969820-mRNA-1 |
| chr6_4 | three_prime_UTR | 1233507 | 1233889 | 1233507 | ID=Msa0969820-mRNA-1:three_prime_utr;Parent=Msa0969820-mRNA-1 |
| chr6_4 | three_prime_UTR | 1233392 | 1233484 | 1233392 | ID=Msa0969820-mRNA-1:three_prime_utr;Parent=Msa0969820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
