Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868950 | KJB15576.1 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 1.78e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868950 | sp|Q06396|ARF1_ORYSJ | 87.845 | 181 | 1 | 1 | 1 | 160 | 1 | 181 | 6.13e-113 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868950 | A0A0D2QF71 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 8.51e-114 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0868950 | Msa0933170 | 0.909624 | 4.636410e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868950 | MtrunA17_Chr6g0450081 | 88.398 | 181 | 0 | 1 | 1 | 160 | 1 | 181 | 1.20e-114 | 322 |
| Msa0868950 | MtrunA17_Chr5g0413451 | 87.845 | 181 | 1 | 1 | 1 | 160 | 1 | 181 | 4.72e-114 | 320 |
| Msa0868950 | MtrunA17_Chr5g0413441 | 87.845 | 181 | 1 | 1 | 1 | 160 | 1 | 181 | 4.72e-114 | 320 |
| Msa0868950 | MtrunA17_Chr7g0270301 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 1.06e-113 | 320 |
| Msa0868950 | MtrunA17_Chr1g0194261 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 1.76e-113 | 319 |
| Msa0868950 | MtrunA17_Chr5g0401761 | 75.000 | 180 | 24 | 1 | 1 | 159 | 1 | 180 | 4.63e-99 | 283 |
| Msa0868950 | MtrunA17_Chr4g0072861 | 54.190 | 179 | 61 | 1 | 1 | 158 | 1 | 179 | 1.91e-66 | 200 |
| Msa0868950 | MtrunA17_Chr5g0395631 | 53.107 | 177 | 62 | 1 | 1 | 156 | 1 | 177 | 3.02e-65 | 197 |
| Msa0868950 | MtrunA17_Chr4g0039591 | 51.977 | 177 | 64 | 1 | 1 | 156 | 1 | 177 | 9.75e-63 | 191 |
| Msa0868950 | MtrunA17_Chr5g0395641 | 47.253 | 182 | 73 | 2 | 1 | 159 | 1 | 182 | 9.84e-58 | 178 |
| Msa0868950 | MtrunA17_Chr1g0188111 | 43.094 | 181 | 82 | 1 | 1 | 160 | 1 | 181 | 2.14e-50 | 159 |
| Msa0868950 | MtrunA17_Chr8g0373271 | 42.683 | 164 | 72 | 2 | 18 | 159 | 17 | 180 | 1.74e-40 | 134 |
| Msa0868950 | MtrunA17_Chr2g0287721 | 29.545 | 176 | 96 | 1 | 5 | 152 | 5 | 180 | 2.23e-27 | 101 |
| Msa0868950 | MtrunA17_Chr5g0434561 | 30.675 | 163 | 91 | 1 | 12 | 152 | 14 | 176 | 9.41e-23 | 89.0 |
| Msa0868950 | MtrunA17_Chr5g0401071 | 28.804 | 184 | 107 | 2 | 1 | 160 | 1 | 184 | 9.61e-23 | 89.0 |
| Msa0868950 | MtrunA17_Chr4g0012371 | 29.630 | 135 | 95 | 0 | 25 | 159 | 30 | 164 | 5.67e-20 | 81.3 |
| Msa0868950 | MtrunA17_Chr2g0294701 | 26.554 | 177 | 93 | 3 | 15 | 156 | 18 | 192 | 4.72e-16 | 71.6 |
| Msa0868950 | MtrunA17_Chr7g0271761 | 25.989 | 177 | 94 | 3 | 15 | 156 | 18 | 192 | 1.10e-15 | 70.9 |
| Msa0868950 | MtrunA17_Chr4g0068171 | 26.554 | 177 | 93 | 3 | 15 | 156 | 18 | 192 | 4.51e-14 | 66.6 |
| Msa0868950 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 111 | 159 | 44 | 92 | 7.10e-13 | 61.2 |
| Msa0868950 | MtrunA17_Chr5g0395651 | 43.038 | 79 | 22 | 2 | 1 | 56 | 1 | 79 | 9.15e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868950 | AT5G14670.2 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 2.68e-113 | 319 |
| Msa0868950 | AT5G14670.3 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 2.68e-113 | 319 |
| Msa0868950 | AT1G10630.1 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 2.93e-113 | 319 |
| Msa0868950 | AT1G10630.2 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 2.93e-113 | 319 |
| Msa0868950 | AT2G47170.2 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 6.59e-113 | 318 |
| Msa0868950 | AT2G47170.1 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 6.59e-113 | 318 |
| Msa0868950 | AT2G47170.3 | 87.293 | 181 | 2 | 1 | 1 | 160 | 1 | 181 | 6.59e-113 | 318 |
| Msa0868950 | AT1G23490.1 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.2 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.7 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.4 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.3 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.1 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.6 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT1G70490.5 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.67e-112 | 317 |
| Msa0868950 | AT5G14670.1 | 86.740 | 181 | 3 | 1 | 1 | 160 | 1 | 181 | 1.96e-112 | 317 |
| Msa0868950 | AT3G62290.3 | 86.188 | 181 | 4 | 1 | 1 | 160 | 1 | 181 | 8.97e-112 | 315 |
| Msa0868950 | AT3G62290.1 | 86.188 | 181 | 4 | 1 | 1 | 160 | 1 | 181 | 8.97e-112 | 315 |
| Msa0868950 | AT3G62290.2 | 86.188 | 181 | 4 | 1 | 1 | 160 | 1 | 181 | 8.97e-112 | 315 |
| Msa0868950 | AT2G15310.1 | 56.354 | 181 | 58 | 1 | 1 | 160 | 1 | 181 | 1.78e-70 | 211 |
| Msa0868950 | AT2G24765.1 | 53.073 | 179 | 63 | 1 | 1 | 158 | 1 | 179 | 1.27e-66 | 201 |
| Msa0868950 | AT3G03120.1 | 51.977 | 177 | 64 | 1 | 1 | 156 | 1 | 177 | 3.09e-63 | 192 |
| Msa0868950 | AT5G17060.2 | 50.847 | 177 | 66 | 1 | 1 | 156 | 1 | 177 | 3.26e-63 | 192 |
| Msa0868950 | AT5G17060.1 | 50.847 | 177 | 66 | 1 | 1 | 156 | 1 | 177 | 3.26e-63 | 192 |
| Msa0868950 | AT3G22950.1 | 44.199 | 181 | 80 | 1 | 1 | 160 | 1 | 181 | 2.85e-53 | 167 |
| Msa0868950 | AT3G22950.2 | 44.199 | 181 | 80 | 1 | 1 | 160 | 1 | 181 | 2.85e-53 | 167 |
| Msa0868950 | AT2G24765.2 | 52.344 | 128 | 40 | 1 | 1 | 107 | 1 | 128 | 2.35e-42 | 138 |
| Msa0868950 | AT3G03120.2 | 51.538 | 130 | 42 | 1 | 1 | 109 | 1 | 130 | 3.21e-42 | 137 |
| Msa0868950 | AT1G02440.1 | 40.323 | 186 | 80 | 4 | 1 | 155 | 1 | 186 | 3.26e-42 | 139 |
| Msa0868950 | AT1G02430.1 | 41.489 | 188 | 75 | 5 | 1 | 155 | 1 | 186 | 5.92e-42 | 139 |
| Msa0868950 | AT2G18390.1 | 42.683 | 164 | 72 | 2 | 18 | 159 | 17 | 180 | 6.82e-40 | 133 |
| Msa0868950 | AT1G02430.2 | 38.509 | 161 | 68 | 4 | 1 | 132 | 1 | 159 | 1.52e-30 | 108 |
| Msa0868950 | AT5G52210.1 | 28.409 | 176 | 98 | 1 | 5 | 152 | 5 | 180 | 9.71e-26 | 97.8 |
| Msa0868950 | AT5G52210.2 | 28.409 | 176 | 98 | 1 | 5 | 152 | 5 | 180 | 9.71e-26 | 97.8 |
| Msa0868950 | AT3G49870.1 | 30.055 | 183 | 104 | 2 | 1 | 159 | 1 | 183 | 6.53e-25 | 95.1 |
| Msa0868950 | AT3G49870.2 | 31.852 | 135 | 92 | 0 | 25 | 159 | 30 | 164 | 8.12e-24 | 91.7 |
| Msa0868950 | AT5G67560.1 | 29.448 | 163 | 93 | 1 | 12 | 152 | 14 | 176 | 1.48e-23 | 91.7 |
| Msa0868950 | AT5G37680.1 | 29.448 | 163 | 93 | 1 | 12 | 152 | 14 | 176 | 5.74e-22 | 87.4 |
| Msa0868950 | AT5G37680.2 | 30.469 | 128 | 89 | 0 | 25 | 152 | 2 | 129 | 1.55e-21 | 85.1 |
| Msa0868950 | AT3G49860.1 | 30.370 | 135 | 94 | 0 | 25 | 159 | 41 | 175 | 9.01e-21 | 84.0 |
| Msa0868950 | AT1G09180.1 | 27.933 | 179 | 92 | 3 | 13 | 156 | 16 | 192 | 1.81e-16 | 73.2 |
| Msa0868950 | AT3G62560.1 | 26.554 | 177 | 93 | 3 | 15 | 156 | 18 | 192 | 7.63e-16 | 71.6 |
| Msa0868950 | AT1G56330.1 | 26.554 | 177 | 93 | 3 | 15 | 156 | 18 | 192 | 2.47e-15 | 70.1 |
| Msa0868950 | AT4G02080.1 | 25.989 | 177 | 94 | 3 | 15 | 156 | 18 | 192 | 2.83e-15 | 70.1 |
Find 57 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGACATTTGAACAATTT+TGG | 0.068203 | 6_1:-2783809 | Msa0868950:three_prime_UTR |
| AAATAAGACCCTGGGTGTTC+TGG | 0.268231 | 6_1:+2785272 | None:intergenic |
| CAGAGCACTTGTGCAACTTC+TGG | 0.283751 | 6_1:-2784213 | Msa0868950:CDS |
| GGAACTTCTGCAATCTGTTT+TGG | 0.293532 | 6_1:-2783623 | Msa0868950:three_prime_UTR |
| TTGCAAGACAAAATTATTAC+TGG | 0.314647 | 6_1:+2783527 | None:intergenic |
| TTCTCCTCTTCAGTGTTACT+TGG | 0.341071 | 6_1:-2783690 | Msa0868950:three_prime_UTR |
| GCTTCACCGTGTGGGATGTC+GGG | 0.356155 | 6_1:-2785862 | Msa0868950:CDS |
| CAGTAGGTTGTTTGCGAAGA+AGG | 0.366217 | 6_1:-2788114 | Msa0868950:CDS |
| AGAGGGTCTTTACGAGGGTT+TGG | 0.373805 | 6_1:-2784190 | Msa0868950:CDS |
| ATTTGATCATTTCCTGAGTC+TGG | 0.383921 | 6_1:-2783781 | Msa0868950:three_prime_UTR |
| TCTGCAGCATTCATTGCATT+TGG | 0.388382 | 6_1:+2784562 | None:intergenic |
| TCAAGTGAATATTGTAATAG+AGG | 0.389229 | 6_1:-2783730 | Msa0868950:three_prime_UTR |
| AGCTTCACCGTGTGGGATGT+CGG | 0.397098 | 6_1:-2785863 | Msa0868950:CDS |
| TCTCCTCTTCAGTGTTACTT+GGG | 0.479131 | 6_1:-2783689 | Msa0868950:three_prime_UTR |
| ATTCTCTCCGCCAACGCCAC+TGG | 0.484693 | 6_1:-2784516 | Msa0868950:intron |
| CTTCACCGTGTGGGATGTCG+GGG | 0.486668 | 6_1:-2785861 | Msa0868950:CDS |
| GGAAGTAATGCCTCCACAAT+GGG | 0.487329 | 6_1:+2785293 | None:intergenic |
| TTCTAACAACATTGCAAGCA+AGG | 0.487356 | 6_1:-2784160 | Msa0868950:intron |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.492492 | 6_1:+2784579 | None:intergenic |
| CTTCATACCAGTGGCGTTGG+CGG | 0.492667 | 6_1:+2784509 | None:intergenic |
| AGACCGAGTGGTTGAGGCAA+GGG | 0.502924 | 6_1:-2785227 | Msa0868950:CDS |
| TATTACAATATTCACTTGAA+AGG | 0.510102 | 6_1:+2783734 | None:intergenic |
| TGATAGAGACCGAGTGGTTG+AGG | 0.512695 | 6_1:-2785233 | Msa0868950:CDS |
| GTCTTTACGAGGGTTTGGAC+TGG | 0.530184 | 6_1:-2784185 | Msa0868950:CDS |
| TGATCATTTCCTGAGTCTGG+TGG | 0.532492 | 6_1:-2783778 | Msa0868950:three_prime_UTR |
| AGTCTGGTGGTTCTTGAAGA+AGG | 0.539082 | 6_1:-2783765 | Msa0868950:three_prime_UTR |
| CGTTCACGAAGCTGTTCAGT+AGG | 0.541353 | 6_1:-2788130 | Msa0868950:CDS |
| ATGGTAGGTCTCGATGCGGC+TGG | 0.552532 | 6_1:-2788077 | Msa0868950:intron |
| GCAGAAATAACTGACAAACT+TGG | 0.552853 | 6_1:-2784544 | Msa0868950:CDS |
| CTTCAAGAACCACCAGACTC+AGG | 0.557629 | 6_1:+2783769 | None:intergenic |
| TATCGGTTGAATAATTCTGA+AGG | 0.558514 | 6_1:-2783569 | Msa0868950:three_prime_UTR |
| CATCCCTTGCCTCAACCACT+CGG | 0.565995 | 6_1:+2785224 | None:intergenic |
| GATCTTCATACCAGTGGCGT+TGG | 0.567883 | 6_1:+2784506 | None:intergenic |
| AACTAGTAAAATTAACATGA+AGG | 0.568565 | 6_1:+2783596 | None:intergenic |
| TTCTGGAGAGGGTCTTTACG+AGG | 0.571595 | 6_1:-2784196 | Msa0868950:CDS |
| ATCTGCAGATCCGCCCATTG+TGG | 0.576990 | 6_1:-2785306 | Msa0868950:intron |
| AAACCCAAGTAACACTGAAG+AGG | 0.579085 | 6_1:+2783686 | None:intergenic |
| GCTGATGTTCTTGTACTCCA+CGG | 0.581443 | 6_1:+2785883 | None:intergenic |
| AGGCAAGGGATGAATTGCAC+AGG | 0.586704 | 6_1:-2785213 | Msa0868950:CDS |
| TGCAGATCCGCCCATTGTGG+AGG | 0.589244 | 6_1:-2785303 | Msa0868950:intron |
| TGGAAGTAATGCCTCCACAA+TGG | 0.593003 | 6_1:+2785292 | None:intergenic |
| GAGACCGAGTGGTTGAGGCA+AGG | 0.594397 | 6_1:-2785228 | Msa0868950:CDS |
| CACTTGTGCAACTTCTGGAG+AGG | 0.598038 | 6_1:-2784208 | Msa0868950:CDS |
| ACTTGTGCAACTTCTGGAGA+GGG | 0.603681 | 6_1:-2784207 | Msa0868950:CDS |
| AGTAATGCCTCCACAATGGG+CGG | 0.622929 | 6_1:+2785296 | None:intergenic |
| AGGATTTAATGTTGAAACCG+TGG | 0.626322 | 6_1:-2785900 | Msa0868950:CDS |
| GAACATCAGCTTCACCGTGT+GGG | 0.628419 | 6_1:-2785870 | Msa0868950:CDS |
| TCTGGAGAGGGTCTTTACGA+GGG | 0.640167 | 6_1:-2784195 | Msa0868950:CDS |
| CATTACTTCCAGAACACCCA+GGG | 0.648785 | 6_1:-2785280 | Msa0868950:CDS |
| TCAGCAAGGACGATGAACAT+CGG | 0.649094 | 6_1:-2783409 | Msa0868950:three_prime_UTR |
| TTCACCGTGTGGGATGTCGG+GGG | 0.658294 | 6_1:-2785860 | Msa0868950:CDS |
| AGAACATCAGCTTCACCGTG+TGG | 0.663793 | 6_1:-2785871 | Msa0868950:CDS |
| GCGTCTTCATAGAATCAGCA+AGG | 0.667691 | 6_1:-2783423 | Msa0868950:three_prime_UTR |
| GCATTACTTCCAGAACACCC+AGG | 0.681110 | 6_1:-2785281 | Msa0868950:CDS |
| ATTGCACAGGATGTTGAATG+AGG | 0.696400 | 6_1:-2785200 | Msa0868950:intron |
| TTTGATGGTAGGTCTCGATG+CGG | 0.707868 | 6_1:-2788081 | Msa0868950:CDS |
| TAGCAATGATAGAGACCGAG+TGG | 0.713240 | 6_1:-2785239 | Msa0868950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATTTTTTTCAATT+GGG | - | chr6_1:2784379-2784398 | Msa0868950:intron | 10.0% |
| !!! | TATGATTAGTTATTAATAAA+TGG | - | chr6_1:2785199-2785218 | Msa0868950:intron | 10.0% |
| !! | GTATATATCTATATAATAAT+TGG | - | chr6_1:2785609-2785628 | Msa0868950:intron | 10.0% |
| !!! | AAAATATATTACTTTGTTTT+CGG | - | chr6_1:2786473-2786492 | Msa0868950:intron | 10.0% |
| !! | ATGTATTATTTGTATATATA+AGG | - | chr6_1:2787681-2787700 | Msa0868950:intron | 10.0% |
| !! | TAAAAATCAATATTGAGAAA+GGG | + | chr6_1:2783572-2783591 | None:intergenic | 15.0% |
| !! | ATCATGAGAATTAAAATAAT+TGG | - | chr6_1:2783779-2783798 | Msa0868950:three_prime_UTR | 15.0% |
| !!! | TCACATCATATTTAATTTAA+TGG | + | chr6_1:2783961-2783980 | None:intergenic | 15.0% |
| !!! | TTTAAAGATCTAAAATAAAC+AGG | + | chr6_1:2784075-2784094 | None:intergenic | 15.0% |
| !! | CATAACTAAAACATAAAAAA+TGG | + | chr6_1:2784100-2784119 | None:intergenic | 15.0% |
| !!! | GAACAATAATTTTTTTCAAT+TGG | - | chr6_1:2784378-2784397 | Msa0868950:intron | 15.0% |
| !! | TATTAATAACTAATCATAAG+TGG | + | chr6_1:2785197-2785216 | None:intergenic | 15.0% |
| !!! | ACAAAGTAATATATTTTTAG+AGG | + | chr6_1:2786470-2786489 | None:intergenic | 15.0% |
| !!! | AAATATATTACTTTGTTTTC+GGG | - | chr6_1:2786474-2786493 | Msa0868950:intron | 15.0% |
| !!! | TTTTATTTTAGGTATGTTTT+TGG | - | chr6_1:2786694-2786713 | Msa0868950:intron | 15.0% |
| !! | TTACCATTATACATAATTAA+AGG | - | chr6_1:2786832-2786851 | Msa0868950:intron | 15.0% |
| !! | TATATTGGAATATATAATGT+TGG | - | chr6_1:2786882-2786901 | Msa0868950:intron | 15.0% |
| !! | AAAATGTTAAATCATAATTG+AGG | + | chr6_1:2787130-2787149 | None:intergenic | 15.0% |
| !!! | TCTTTTATATAATACTATCT+TGG | - | chr6_1:2787149-2787168 | Msa0868950:intron | 15.0% |
| !!! | AATTTTACTAGTTTGATTAT+CGG | - | chr6_1:2787963-2787982 | Msa0868950:intron | 15.0% |
| !!! | TTTTTGTTATAAGATGTAAA+AGG | - | chr6_1:2788084-2788103 | Msa0868950:CDS | 15.0% |
| !!! | ATTTTGTATAAATTGAAGCT+CGG | - | chr6_1:2783505-2783524 | Msa0868950:three_prime_UTR | 20.0% |
| !! | GTAAAAATCAATATTGAGAA+AGG | + | chr6_1:2783573-2783592 | None:intergenic | 20.0% |
| !! | TTTGTTTATAATGATACCTT+AGG | - | chr6_1:2783671-2783690 | Msa0868950:three_prime_UTR | 20.0% |
| !! | ATCTACATAATTATAACCTA+AGG | + | chr6_1:2783690-2783709 | None:intergenic | 20.0% |
| !!! | ATCTCAATGATAAATTTTAC+AGG | + | chr6_1:2783724-2783743 | None:intergenic | 20.0% |
| !! | AGAATTAAAATAATTGGTTG+TGG | - | chr6_1:2783785-2783804 | Msa0868950:three_prime_UTR | 20.0% |
| !!! | TTTAAAGATCTAAAACAAAC+AGG | - | chr6_1:2783845-2783864 | Msa0868950:intron | 20.0% |
| !! | AAAAGAGATGTAAAATAGTT+AGG | - | chr6_1:2784293-2784312 | Msa0868950:intron | 20.0% |
| !! | AAAGAGATGTAAAATAGTTA+GGG | - | chr6_1:2784294-2784313 | Msa0868950:intron | 20.0% |
| !!! | TATTTATGCATGTTTGTTAA+AGG | - | chr6_1:2784429-2784448 | Msa0868950:intron | 20.0% |
| !! | ATACTATAACATCTTCTAAA+TGG | + | chr6_1:2784556-2784575 | None:intergenic | 20.0% |
| !! | ATAAATCCAAGTTGTATAAA+CGG | + | chr6_1:2785225-2785244 | None:intergenic | 20.0% |
| !! | GTTAAAATTCAGAAATTTGA+AGG | + | chr6_1:2785308-2785327 | None:intergenic | 20.0% |
| !! | TAAAGTTGTTAGATAAAGAT+CGG | + | chr6_1:2785376-2785395 | None:intergenic | 20.0% |
| !!! | TGGAATAATTTTTTATCTAC+AGG | - | chr6_1:2785629-2785648 | Msa0868950:intron | 20.0% |
| !!! | TATTCCATTACAATGTTTTT+TGG | - | chr6_1:2786176-2786195 | Msa0868950:intron | 20.0% |
| !!! | ATTCCATTACAATGTTTTTT+GGG | - | chr6_1:2786177-2786196 | Msa0868950:intron | 20.0% |
| !!! | ACACTTTTTTCAATATAATG+AGG | - | chr6_1:2786205-2786224 | Msa0868950:intron | 20.0% |
| !!! | CACTTTTTTCAATATAATGA+GGG | - | chr6_1:2786206-2786225 | Msa0868950:intron | 20.0% |
| !!! | ATTATTTTTGCTAGTTTTCT+GGG | + | chr6_1:2786596-2786615 | None:intergenic | 20.0% |
| !!! | AATTATTTTTGCTAGTTTTC+TGG | + | chr6_1:2786597-2786616 | None:intergenic | 20.0% |
| !!! | ATCAACCAAGATTTTATTTT+AGG | - | chr6_1:2786683-2786702 | Msa0868950:intron | 20.0% |
| !! | ACATACCTAAAATAAAATCT+TGG | + | chr6_1:2786691-2786710 | None:intergenic | 20.0% |
| !! | TTTATATAATACTATCTTGG+AGG | - | chr6_1:2787152-2787171 | Msa0868950:intron | 20.0% |
| !! | TTATATAATACTATCTTGGA+GGG | - | chr6_1:2787153-2787172 | Msa0868950:intron | 20.0% |
| !! | ATTGTATTATAAGTATGCAA+AGG | - | chr6_1:2787556-2787575 | Msa0868950:intron | 20.0% |
| !! | TATTACAATATTCACTTGAA+AGG | + | chr6_1:2787818-2787837 | None:intergenic | 20.0% |
| !! | AACTAGTAAAATTAACATGA+AGG | + | chr6_1:2787956-2787975 | None:intergenic | 20.0% |
| ! | AAATAAACAGGCCTTTAATA+GGG | + | chr6_1:2784063-2784082 | None:intergenic | 25.0% |
| ! | AAAATAAACAGGCCTTTAAT+AGG | + | chr6_1:2784064-2784083 | None:intergenic | 25.0% |
| ! | ATATATCAATCCATTATGCA+GGG | + | chr6_1:2784498-2784517 | None:intergenic | 25.0% |
| ! | TCTTCTAAATGGAGAAATAA+AGG | + | chr6_1:2784545-2784564 | None:intergenic | 25.0% |
| ! | TATACAACTTGGATTTATCA+TGG | - | chr6_1:2785227-2785246 | Msa0868950:CDS | 25.0% |
| ! | TATCATGGTAATAAAACTAC+TGG | - | chr6_1:2785242-2785261 | Msa0868950:CDS | 25.0% |
| !! | TCACAATTTCTAGATTTCAA+TGG | + | chr6_1:2785499-2785518 | None:intergenic | 25.0% |
| ! | GAAATCTAGAAATTGTGAAT+TGG | - | chr6_1:2785501-2785520 | Msa0868950:intron | 25.0% |
| ! | TACATTAGAAACACAATTTG+TGG | + | chr6_1:2785570-2785589 | None:intergenic | 25.0% |
| ! | AATGTACATATGTCATCTTA+TGG | - | chr6_1:2785584-2785603 | Msa0868950:intron | 25.0% |
| ! | TATACAAGCTTCTATAATGT+GGG | - | chr6_1:2785830-2785849 | Msa0868950:intron | 25.0% |
| ! | AATAAAAGACGTAGGTAAAA+AGG | - | chr6_1:2785917-2785936 | Msa0868950:intron | 25.0% |
| ! | ATAAAAGACGTAGGTAAAAA+GGG | - | chr6_1:2785918-2785937 | Msa0868950:intron | 25.0% |
| ! | AAACCCAAAAAACATTGTAA+TGG | + | chr6_1:2786183-2786202 | None:intergenic | 25.0% |
| ! | TCATACAAGATAAACAACAA+AGG | + | chr6_1:2786399-2786418 | None:intergenic | 25.0% |
| !!! | TATGTTTTTGGTGTTCTTAA+TGG | - | chr6_1:2786706-2786725 | Msa0868950:intron | 25.0% |
| ! | ATTCATAGTTTCACACTATA+TGG | - | chr6_1:2786746-2786765 | Msa0868950:intron | 25.0% |
| ! | CAGCCTTTAATTATGTATAA+TGG | + | chr6_1:2786838-2786857 | None:intergenic | 25.0% |
| !! | AGTGATAGTCTTAAGTATAT+TGG | - | chr6_1:2786867-2786886 | Msa0868950:intron | 25.0% |
| ! | ATAAGTATGCAAAGGTTAAA+AGG | - | chr6_1:2787564-2787583 | Msa0868950:intron | 25.0% |
| ! | AAGGAGAAATGTAATATGTA+AGG | - | chr6_1:2787583-2787602 | Msa0868950:intron | 25.0% |
| ! | TGAGATAACATAAAAAAGGT+AGG | + | chr6_1:2787714-2787733 | None:intergenic | 25.0% |
| !!! | TACCTTTTTTATGTTATCTC+AGG | - | chr6_1:2787713-2787732 | Msa0868950:intron | 25.0% |
| !! | ATGAGACATTTGAACAATTT+TGG | - | chr6_1:2787740-2787759 | Msa0868950:intron | 25.0% |
| !! | TGAGACATTTGAACAATTTT+GGG | - | chr6_1:2787741-2787760 | Msa0868950:intron | 25.0% |
| ! | TCAAGTGAATATTGTAATAG+AGG | - | chr6_1:2787819-2787838 | Msa0868950:intron | 25.0% |
| !!! | CTAATACTTTTAGCTGTAAT+TGG | - | chr6_1:2787905-2787924 | Msa0868950:intron | 25.0% |
| ! | TTGCAAGACAAAATTATTAC+TGG | + | chr6_1:2788025-2788044 | None:intergenic | 25.0% |
| AATTGAACTAACCAATGGTA+GGG | + | chr6_1:2783549-2783568 | None:intergenic | 30.0% | |
| AACAAAATATTCCCTCTCAT+AGG | - | chr6_1:2783745-2783764 | Msa0868950:three_prime_UTR | 30.0% | |
| AATAATTGGTTGTGGCATTA+AGG | - | chr6_1:2783793-2783812 | Msa0868950:three_prime_UTR | 30.0% | |
| AAACAAACAGGCCTTTAATA+CGG | - | chr6_1:2783857-2783876 | Msa0868950:intron | 30.0% | |
| AATAAACAGGCCTTTAATAG+GGG | + | chr6_1:2784062-2784081 | None:intergenic | 30.0% | |
| CGTGTAAGATATTCTCAAAT+TGG | - | chr6_1:2784124-2784143 | Msa0868950:intron | 30.0% | |
| ! | TCTCTTTTTGTTACTAGCAA+TGG | + | chr6_1:2784281-2784300 | None:intergenic | 30.0% |
| GATGTAAAATAGTTAGGGAT+AGG | - | chr6_1:2784299-2784318 | Msa0868950:intron | 30.0% | |
| !! | TTCTTGCTGTCTCTTTTAAT+AGG | + | chr6_1:2784361-2784380 | None:intergenic | 30.0% |
| !!! | AATTTGACCCATTTTTCAAG+AGG | - | chr6_1:2784469-2784488 | Msa0868950:intron | 30.0% |
| !!! | ATTTGACCCATTTTTCAAGA+GGG | - | chr6_1:2784470-2784489 | Msa0868950:intron | 30.0% |
| TATATCAATCCATTATGCAG+GGG | + | chr6_1:2784497-2784516 | None:intergenic | 30.0% | |
| CATATATCAATCCATTATGC+AGG | + | chr6_1:2784499-2784518 | None:intergenic | 30.0% | |
| ! | ATGGATTGATATATGAAAGC+TGG | - | chr6_1:2784504-2784523 | Msa0868950:intron | 30.0% |
| GTTTGAATAGGAAAAGAAGA+TGG | + | chr6_1:2784762-2784781 | None:intergenic | 30.0% | |
| !! | GTAAAGAAAATGGGTTTTGA+TGG | + | chr6_1:2784799-2784818 | None:intergenic | 30.0% |
| AAGTTGGCAGTAAAGAAAAT+GGG | + | chr6_1:2784808-2784827 | None:intergenic | 30.0% | |
| ! | TAAGTTGGCAGTAAAGAAAA+TGG | + | chr6_1:2784809-2784828 | None:intergenic | 30.0% |
| TCATAGTGTTAGAAGAAGAA+AGG | - | chr6_1:2784861-2784880 | Msa0868950:intron | 30.0% | |
| CATAGTGTTAGAAGAAGAAA+GGG | - | chr6_1:2784862-2784881 | Msa0868950:intron | 30.0% | |
| ! | GTTTTATATACCAGTCAATG+TGG | - | chr6_1:2784987-2785006 | Msa0868950:intron | 30.0% |
| !! | TTCCATTTTAAAGATTGCGT+TGG | - | chr6_1:2785138-2785157 | Msa0868950:intron | 30.0% |
| !! | TCCATTTTAAAGATTGCGTT+GGG | - | chr6_1:2785139-2785158 | Msa0868950:intron | 30.0% |
| TTTGAAGGATGTTTATCTCA+GGG | + | chr6_1:2785293-2785312 | None:intergenic | 30.0% | |
| ATTTGAAGGATGTTTATCTC+AGG | + | chr6_1:2785294-2785313 | None:intergenic | 30.0% | |
| TGTATTCTAAACGTGAACTT+AGG | - | chr6_1:2785338-2785357 | Msa0868950:intron | 30.0% | |
| TGTATATTATGCTTGTTTCC+TGG | - | chr6_1:2785739-2785758 | Msa0868950:intron | 30.0% | |
| CTATACAAGCTTCTATAATG+TGG | - | chr6_1:2785829-2785848 | Msa0868950:intron | 30.0% | |
| ! | ACTCTGTCACTTAATAATAG+TGG | + | chr6_1:2785893-2785912 | None:intergenic | 30.0% |
| TAAAAGACGTAGGTAAAAAG+GGG | - | chr6_1:2785919-2785938 | Msa0868950:intron | 30.0% | |
| ! | TTGCTACATCGTTTCATTTT+TGG | - | chr6_1:2786044-2786063 | Msa0868950:intron | 30.0% |
| TTCGAACATCGATCAAAATA+AGG | + | chr6_1:2786084-2786103 | None:intergenic | 30.0% | |
| ! | CATTGTAATGGAATACACAT+GGG | + | chr6_1:2786171-2786190 | None:intergenic | 30.0% |
| ! | ACATTGTAATGGAATACACA+TGG | + | chr6_1:2786172-2786191 | None:intergenic | 30.0% |
| TAGCAACTCTATAGACTTAA+TGG | - | chr6_1:2786642-2786661 | Msa0868950:intron | 30.0% | |
| AGCAACTCTATAGACTTAAT+GGG | - | chr6_1:2786643-2786662 | Msa0868950:intron | 30.0% | |
| TATATAACAAACATCTGCAG+AGG | + | chr6_1:2786791-2786810 | None:intergenic | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | + | chr6_1:2786973-2786992 | None:intergenic | 30.0% |
| !! | TCCATTTTTAATGCAATGAC+TGG | - | chr6_1:2787295-2787314 | Msa0868950:intron | 30.0% |
| TCCAGTCATTGCATTAAAAA+TGG | + | chr6_1:2787299-2787318 | None:intergenic | 30.0% | |
| ATTTGTTCCAGAAAAACAAG+AGG | + | chr6_1:2787538-2787557 | None:intergenic | 30.0% | |
| TGCCTGAGATAACATAAAAA+AGG | + | chr6_1:2787718-2787737 | None:intergenic | 30.0% | |
| ! | TATCGGTTGAATAATTCTGA+AGG | - | chr6_1:2787980-2787999 | Msa0868950:intron | 30.0% |
| !! | AATTCTGAAGGTTCTGTTTT+TGG | - | chr6_1:2787992-2788011 | Msa0868950:intron | 30.0% |
| ! | GAAGGAGATGAGAATTTTGA+TGG | - | chr6_1:2783453-2783472 | Msa0868950:three_prime_UTR | 35.0% |
| !! | GAGATGAGAATTTTGATGGT+AGG | - | chr6_1:2783457-2783476 | Msa0868950:three_prime_UTR | 35.0% |
| GAATTGAACTAACCAATGGT+AGG | + | chr6_1:2783550-2783569 | None:intergenic | 35.0% | |
| AAGGGAATTGAACTAACCAA+TGG | + | chr6_1:2783554-2783573 | None:intergenic | 35.0% | |
| TTAGTAACGATCCTATGAGA+GGG | + | chr6_1:2783759-2783778 | None:intergenic | 35.0% | |
| TTTAGTAACGATCCTATGAG+AGG | + | chr6_1:2783760-2783779 | None:intergenic | 35.0% | |
| AACAAACAGGCCTTTAATAC+GGG | - | chr6_1:2783858-2783877 | Msa0868950:intron | 35.0% | |
| TTAGACAAAGCCCGTATTAA+AGG | + | chr6_1:2783871-2783890 | None:intergenic | 35.0% | |
| CACAAGTTTATTTCCACCAT+TGG | - | chr6_1:2783921-2783940 | Msa0868950:intron | 35.0% | |
| GTGACTTTATGATCAAATGC+TGG | - | chr6_1:2783977-2783996 | Msa0868950:intron | 35.0% | |
| TTAGACAAAGCCCCTATTAA+AGG | - | chr6_1:2784049-2784068 | Msa0868950:intron | 35.0% | |
| AATTAATCCCTGCTCTTGAA+TGG | + | chr6_1:2784250-2784269 | None:intergenic | 35.0% | |
| ! | TCAATTGGGTCTTGTGTTTA+TGG | - | chr6_1:2784393-2784412 | Msa0868950:intron | 35.0% |
| ! | CAATTGGGTCTTGTGTTTAT+GGG | - | chr6_1:2784394-2784413 | Msa0868950:intron | 35.0% |
| ! | GCAATATGTCTTTTCTCTGT+TGG | + | chr6_1:2784690-2784709 | None:intergenic | 35.0% |
| GATTCAACGAGAGTTTGAAT+AGG | + | chr6_1:2784774-2784793 | None:intergenic | 35.0% | |
| TTTACTGCCAACTTATGTGT+CGG | - | chr6_1:2784814-2784833 | Msa0868950:intron | 35.0% | |
| CTTCTAACACTATGACTTCT+TGG | + | chr6_1:2784856-2784875 | None:intergenic | 35.0% | |
| AAAACCATGTACAAGATACC+CGG | + | chr6_1:2784972-2784991 | None:intergenic | 35.0% | |
| AGATACTACTTTCATCCCTA+AGG | + | chr6_1:2785087-2785106 | None:intergenic | 35.0% | |
| !! | CCATTTTAAAGATTGCGTTG+GGG | - | chr6_1:2785140-2785159 | Msa0868950:intron | 35.0% |
| AAATGGCCGTTTATACAACT+TGG | - | chr6_1:2785216-2785235 | Msa0868950:CDS | 35.0% | |
| GTGAACTTAGGAATGTTAGT+TGG | - | chr6_1:2785350-2785369 | Msa0868950:intron | 35.0% | |
| TGATACTTGTGCAATCATTG+TGG | + | chr6_1:2785408-2785427 | None:intergenic | 35.0% | |
| !!! | GTGTTTTTTGTTTGCGTTTC+AGG | - | chr6_1:2785447-2785466 | Msa0868950:intron | 35.0% |
| AGGATTTAATGTTGAAACCG+TGG | - | chr6_1:2785649-2785668 | Msa0868950:intron | 35.0% | |
| GAGTGAAGAATAAAAGACGT+AGG | - | chr6_1:2785909-2785928 | Msa0868950:intron | 35.0% | |
| AAAAGACGTAGGTAAAAAGG+GGG | - | chr6_1:2785920-2785939 | Msa0868950:intron | 35.0% | |
| !! | GTACATAAGACTTGCTGAAA+AGG | + | chr6_1:2786118-2786137 | None:intergenic | 35.0% |
| TTATGTACTGTGTATGACTG+TGG | - | chr6_1:2786130-2786149 | Msa0868950:intron | 35.0% | |
| AACCACAAAAATAAGACCCT+GGG | + | chr6_1:2786288-2786307 | None:intergenic | 35.0% | |
| ACATGCAAAAGTAACTACGA+AGG | + | chr6_1:2786438-2786457 | None:intergenic | 35.0% | |
| ! | TGCTTGACAACACTTTTGTT+TGG | - | chr6_1:2786528-2786547 | Msa0868950:intron | 35.0% |
| !! | GCTTGACAACACTTTTGTTT+GGG | - | chr6_1:2786529-2786548 | Msa0868950:intron | 35.0% |
| !! | CTTGACAACACTTTTGTTTG+GGG | - | chr6_1:2786530-2786549 | Msa0868950:intron | 35.0% |
| !! | TTGACAACACTTTTGTTTGG+GGG | - | chr6_1:2786531-2786550 | Msa0868950:intron | 35.0% |
| ! | TTCACACTATATGGTTTGCA+CGG | - | chr6_1:2786755-2786774 | Msa0868950:intron | 35.0% |
| ATAATGTTGGTATGTGAACC+TGG | - | chr6_1:2786895-2786914 | Msa0868950:intron | 35.0% | |
| CTGAAACAAAATTACCATCC+AGG | + | chr6_1:2786916-2786935 | None:intergenic | 35.0% | |
| !! | CTGGATGGTAATTTTGTTTC+AGG | - | chr6_1:2786914-2786933 | Msa0868950:intron | 35.0% |
| GCAGAAATAACTGACAAACT+TGG | - | chr6_1:2787005-2787024 | Msa0868950:intron | 35.0% | |
| ! | CTCTTGGTGATTAGTTAATC+TGG | + | chr6_1:2787258-2787277 | None:intergenic | 35.0% |
| GCAATGACTGGATTTATTTC+AGG | - | chr6_1:2787307-2787326 | Msa0868950:intron | 35.0% | |
| TTCTAACAACATTGCAAGCA+AGG | - | chr6_1:2787389-2787408 | Msa0868950:intron | 35.0% | |
| ATTTGATCATTTCCTGAGTC+TGG | - | chr6_1:2787768-2787787 | Msa0868950:intron | 35.0% | |
| GAGATTCATTGATCCAATGG+TGG | + | chr6_1:2783937-2783956 | None:intergenic | 40.0% | |
| GGTGAGATTCATTGATCCAA+TGG | + | chr6_1:2783940-2783959 | None:intergenic | 40.0% | |
| AAGTTTGCCATTCAAGAGCA+GGG | - | chr6_1:2784240-2784259 | Msa0868950:intron | 40.0% | |
| CTTGTGTTTATGGGTGGTAA+AGG | - | chr6_1:2784403-2784422 | Msa0868950:intron | 40.0% | |
| CTGTAACAGATATGGTTGGA+CGG | + | chr6_1:2784718-2784737 | None:intergenic | 40.0% | |
| TCCAACCATATCTGTTACAG+AGG | - | chr6_1:2784718-2784737 | Msa0868950:intron | 40.0% | |
| ACCTCTGTAACAGATATGGT+TGG | + | chr6_1:2784722-2784741 | None:intergenic | 40.0% | |
| AGAGGTGAGCCATTATATCT+CGG | - | chr6_1:2784736-2784755 | Msa0868950:intron | 40.0% | |
| AGAAGATGGCCGAGATATAA+TGG | + | chr6_1:2784748-2784767 | None:intergenic | 40.0% | |
| TTACTGCCAACTTATGTGTC+GGG | - | chr6_1:2784815-2784834 | Msa0868950:intron | 40.0% | |
| ! | ATTTTAGACACCTGCTGAAC+CGG | - | chr6_1:2784950-2784969 | Msa0868950:intron | 40.0% |
| ! | ATCCTTGAACATGTGTTGCT+AGG | - | chr6_1:2785014-2785033 | Msa0868950:intron | 40.0% |
| TCCGTAGATCAATGATCCTT+AGG | - | chr6_1:2785068-2785087 | Msa0868950:intron | 40.0% | |
| CCCTAAGGATCATTGATCTA+CGG | + | chr6_1:2785072-2785091 | None:intergenic | 40.0% | |
| CCGTAGATCAATGATCCTTA+GGG | - | chr6_1:2785069-2785088 | Msa0868950:intron | 40.0% | |
| ! | CCCCAACGCAATCTTTAAAA+TGG | + | chr6_1:2785143-2785162 | None:intergenic | 40.0% |
| !! | GTGAGTGGATTGTCGTATAT+AGG | - | chr6_1:2785949-2785968 | Msa0868950:intron | 40.0% |
| CAACCACAAAAATAAGACCC+TGG | + | chr6_1:2786289-2786308 | None:intergenic | 40.0% | |
| ATTGCACAGGATGTTGAATG+AGG | - | chr6_1:2786349-2786368 | Msa0868950:intron | 40.0% | |
| AACAAACATCTGCAGAGGAA+GGG | + | chr6_1:2786786-2786805 | None:intergenic | 40.0% | |
| TAACAAACATCTGCAGAGGA+AGG | + | chr6_1:2786787-2786806 | None:intergenic | 40.0% | |
| TCTGCAGCATTCATTGCATT+TGG | + | chr6_1:2786990-2787009 | None:intergenic | 40.0% | |
| AGATCAGATCTTCATACCAG+TGG | + | chr6_1:2787052-2787071 | None:intergenic | 40.0% | |
| ! | CTTGGTTGTTGTTGTTGTTG+TGG | - | chr6_1:2787209-2787228 | Msa0868950:intron | 40.0% |
| ! | GTTGTTGTTGTTGTTGTGGA+GGG | - | chr6_1:2787213-2787232 | Msa0868950:intron | 40.0% |
| CTGCTGTATCATTGTTCACT+TGG | - | chr6_1:2787488-2787507 | Msa0868950:intron | 40.0% | |
| AAAAACAAGAGGATGGAGAG+TGG | + | chr6_1:2787527-2787546 | None:intergenic | 40.0% | |
| !!! | TCTCCATCCTCTTGTTTTTC+TGG | - | chr6_1:2787528-2787547 | Msa0868950:intron | 40.0% |
| GTTCCAGAAAAACAAGAGGA+TGG | + | chr6_1:2787534-2787553 | None:intergenic | 40.0% | |
| ! | TTCTCCTCTTCAGTGTTACT+TGG | - | chr6_1:2787859-2787878 | Msa0868950:intron | 40.0% |
| !! | TCTCCTCTTCAGTGTTACTT+GGG | - | chr6_1:2787860-2787879 | Msa0868950:intron | 40.0% |
| AAACCCAAGTAACACTGAAG+AGG | + | chr6_1:2787866-2787885 | None:intergenic | 40.0% | |
| ! | GGAACTTCTGCAATCTGTTT+TGG | - | chr6_1:2787926-2787945 | Msa0868950:intron | 40.0% |
| CAGTAGGTTGTTTGCGAAGA+AGG | - | chr6_1:2783435-2783454 | Msa0868950:three_prime_UTR | 45.0% | |
| ! | TTTGATGGTAGGTCTCGATG+CGG | - | chr6_1:2783468-2783487 | Msa0868950:three_prime_UTR | 45.0% |
| GTTACTACCATCCCTACCAT+TGG | - | chr6_1:2783535-2783554 | Msa0868950:three_prime_UTR | 45.0% | |
| GAACTAACCAATGGTAGGGA+TGG | + | chr6_1:2783545-2783564 | None:intergenic | 45.0% | |
| AACAAAGACACCACCTGACA+CGG | + | chr6_1:2783646-2783665 | None:intergenic | 45.0% | |
| CAAGTTTGCCATTCAAGAGC+AGG | - | chr6_1:2784239-2784258 | Msa0868950:intron | 45.0% | |
| ! | TTGGGTCTTGTGTTTATGGG+TGG | - | chr6_1:2784397-2784416 | Msa0868950:intron | 45.0% |
| AGGGGACCCTCTTGAAAAAT+GGG | + | chr6_1:2784479-2784498 | None:intergenic | 45.0% | |
| GCTCACCTCTGTAACAGATA+TGG | + | chr6_1:2784726-2784745 | None:intergenic | 45.0% | |
| CAAGTTCCCGACACATAAGT+TGG | + | chr6_1:2784824-2784843 | None:intergenic | 45.0% | |
| ! | TTTTAGACACCTGCTGAACC+GGG | - | chr6_1:2784951-2784970 | Msa0868950:intron | 45.0% |
| TGAACCGGGTATCTTGTACA+TGG | - | chr6_1:2784965-2784984 | Msa0868950:intron | 45.0% | |
| AAGGATCAAGCCACATTGAC+TGG | + | chr6_1:2785000-2785019 | None:intergenic | 45.0% | |
| CTCCTAGCAACACATGTTCA+AGG | + | chr6_1:2785019-2785038 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCAAAGAGAGTGA+CGG | - | chr6_1:2785036-2785055 | Msa0868950:intron | 45.0% |
| GCTGATGTTCTTGTACTCCA+CGG | + | chr6_1:2785669-2785688 | None:intergenic | 45.0% | |
| GAGCTAGTAGAGGTCATGTA+TGG | - | chr6_1:2785769-2785788 | Msa0868950:intron | 45.0% | |
| TCACATAACACACAGCATGC+AGG | + | chr6_1:2785865-2785884 | None:intergenic | 45.0% | |
| ! | GACTGTGGTGTTTTGCTTAC+TGG | - | chr6_1:2786145-2786164 | Msa0868950:intron | 45.0% |
| GGAAGTAATGCCTCCACAAT+GGG | + | chr6_1:2786259-2786278 | None:intergenic | 45.0% | |
| TGGAAGTAATGCCTCCACAA+TGG | + | chr6_1:2786260-2786279 | None:intergenic | 45.0% | |
| CATTACTTCCAGAACACCCA+GGG | - | chr6_1:2786269-2786288 | Msa0868950:intron | 45.0% | |
| AAATAAGACCCTGGGTGTTC+TGG | + | chr6_1:2786280-2786299 | None:intergenic | 45.0% | |
| !!! | CACCCAGGGTCTTATTTTTG+TGG | - | chr6_1:2786283-2786302 | Msa0868950:intron | 45.0% |
| TAGCAATGATAGAGACCGAG+TGG | - | chr6_1:2786310-2786329 | Msa0868950:intron | 45.0% | |
| TGTTGGTATGTGAACCTGGA+TGG | - | chr6_1:2786899-2786918 | Msa0868950:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr6_1:2787192-2787211 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr6_1:2787193-2787212 | None:intergenic | 45.0% |
| ! | GGTTGTTGTTGTTGTTGTGG+AGG | - | chr6_1:2787212-2787231 | Msa0868950:intron | 45.0% |
| TAATCACCAAGAGACGTGCA+TGG | - | chr6_1:2787265-2787284 | Msa0868950:intron | 45.0% | |
| AATCACCAAGAGACGTGCAT+GGG | - | chr6_1:2787266-2787285 | Msa0868950:intron | 45.0% | |
| ! | ACTTGTGCAACTTCTGGAGA+GGG | - | chr6_1:2787342-2787361 | Msa0868950:intron | 45.0% |
| TGATCATTTCCTGAGTCTGG+TGG | - | chr6_1:2787771-2787790 | Msa0868950:intron | 45.0% | |
| AGTCTGGTGGTTCTTGAAGA+AGG | - | chr6_1:2787784-2787803 | Msa0868950:intron | 45.0% | |
| GCGTCTTCATAGAATCAGCA+AGG | - | chr6_1:2788126-2788145 | Msa0868950:CDS | 45.0% | |
| CGTTCACGAAGCTGTTCAGT+AGG | - | chr6_1:2783419-2783438 | Msa0868950:three_prime_UTR | 50.0% | |
| TCATGTCAAGTGTCCGTGTC+AGG | - | chr6_1:2783630-2783649 | Msa0868950:three_prime_UTR | 50.0% | |
| CAGGGGACCCTCTTGAAAAA+TGG | + | chr6_1:2784480-2784499 | None:intergenic | 50.0% | |
| CAGATATGGTTGGACGGTGA+TGG | + | chr6_1:2784712-2784731 | None:intergenic | 50.0% | |
| TACAAGATACCCGGTTCAGC+AGG | + | chr6_1:2784963-2784982 | None:intergenic | 50.0% | |
| AGTGTCAAAGAGAGTGACGG+TGG | - | chr6_1:2785039-2785058 | Msa0868950:intron | 50.0% | |
| AGAACATCAGCTTCACCGTG+TGG | - | chr6_1:2785678-2785697 | Msa0868950:intron | 50.0% | |
| GAACATCAGCTTCACCGTGT+GGG | - | chr6_1:2785679-2785698 | Msa0868950:intron | 50.0% | |
| ! | TCTACTAGCTCTCTGTCACC+AGG | + | chr6_1:2785760-2785779 | None:intergenic | 50.0% |
| TGGTGACAGAGAGCTAGTAG+AGG | - | chr6_1:2785759-2785778 | Msa0868950:intron | 50.0% | |
| AAAAGGGGGAGAGTAGTGAG+TGG | - | chr6_1:2785934-2785953 | Msa0868950:intron | 50.0% | |
| AGTAATGCCTCCACAATGGG+CGG | + | chr6_1:2786256-2786275 | None:intergenic | 50.0% | |
| GCATTACTTCCAGAACACCC+AGG | - | chr6_1:2786268-2786287 | Msa0868950:intron | 50.0% | |
| TGATAGAGACCGAGTGGTTG+AGG | - | chr6_1:2786316-2786335 | Msa0868950:intron | 50.0% | |
| AGGCAAGGGATGAATTGCAC+AGG | - | chr6_1:2786336-2786355 | Msa0868950:intron | 50.0% | |
| GATCTTCATACCAGTGGCGT+TGG | + | chr6_1:2787046-2787065 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr6_1:2787188-2787207 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr6_1:2787194-2787213 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr6_1:2787191-2787210 | Msa0868950:intron | 50.0% | |
| ! | CAGAGCACTTGTGCAACTTC+TGG | - | chr6_1:2787336-2787355 | Msa0868950:intron | 50.0% |
| ! | CACTTGTGCAACTTCTGGAG+AGG | - | chr6_1:2787341-2787360 | Msa0868950:intron | 50.0% |
| ! | TTCTGGAGAGGGTCTTTACG+AGG | - | chr6_1:2787353-2787372 | Msa0868950:intron | 50.0% |
| TCTGGAGAGGGTCTTTACGA+GGG | - | chr6_1:2787354-2787373 | Msa0868950:intron | 50.0% | |
| AGAGGGTCTTTACGAGGGTT+TGG | - | chr6_1:2787359-2787378 | Msa0868950:intron | 50.0% | |
| GTCTTTACGAGGGTTTGGAC+TGG | - | chr6_1:2787364-2787383 | Msa0868950:intron | 50.0% | |
| CTTCAAGAACCACCAGACTC+AGG | + | chr6_1:2787783-2787802 | None:intergenic | 50.0% | |
| TGTCAAGTGTCCGTGTCAGG+TGG | - | chr6_1:2783633-2783652 | Msa0868950:three_prime_UTR | 55.0% | |
| CAAGAGGGTCCCCTGCATAA+TGG | - | chr6_1:2784485-2784504 | Msa0868950:intron | 55.0% | |
| ! | TTGCGTTGGGGTGTCATGAC+AGG | - | chr6_1:2785152-2785171 | Msa0868950:intron | 55.0% |
| AGCTTCACCGTGTGGGATGT+CGG | - | chr6_1:2785686-2785705 | Msa0868950:intron | 55.0% | |
| ATCTGCAGATCCGCCCATTG+TGG | - | chr6_1:2786243-2786262 | Msa0868950:intron | 55.0% | |
| AGACCGAGTGGTTGAGGCAA+GGG | - | chr6_1:2786322-2786341 | Msa0868950:intron | 55.0% | |
| CATCCCTTGCCTCAACCACT+CGG | + | chr6_1:2786328-2786347 | None:intergenic | 55.0% | |
| ! | CTTCATACCAGTGGCGTTGG+CGG | + | chr6_1:2787043-2787062 | None:intergenic | 55.0% |
| ! | TTTGTGCCGACCCCACTTAG+TGG | - | chr6_1:2787179-2787198 | Msa0868950:intron | 55.0% |
| ! | TTGTGCCGACCCCACTTAGT+GGG | - | chr6_1:2787180-2787199 | Msa0868950:intron | 55.0% |
| CGACCCCACTTAGTGGGATA+AGG | - | chr6_1:2787186-2787205 | Msa0868950:intron | 55.0% | |
| GTTCACCCATGCACGTCTCT+TGG | + | chr6_1:2787274-2787293 | None:intergenic | 55.0% | |
| ATGGTAGGTCTCGATGCGGC+TGG | - | chr6_1:2783472-2783491 | Msa0868950:three_prime_UTR | 60.0% | |
| GCTTCACCGTGTGGGATGTC+GGG | - | chr6_1:2785687-2785706 | Msa0868950:intron | 60.0% | |
| CTTCACCGTGTGGGATGTCG+GGG | - | chr6_1:2785688-2785707 | Msa0868950:intron | 60.0% | |
| TTCACCGTGTGGGATGTCGG+GGG | - | chr6_1:2785689-2785708 | Msa0868950:intron | 60.0% | |
| TGCAGATCCGCCCATTGTGG+AGG | - | chr6_1:2786246-2786265 | Msa0868950:intron | 60.0% | |
| GAGACCGAGTGGTTGAGGCA+AGG | - | chr6_1:2786321-2786340 | Msa0868950:intron | 60.0% | |
| ATTCTCTCCGCCAACGCCAC+TGG | - | chr6_1:2787033-2787052 | Msa0868950:intron | 60.0% | |
| CTGACCCCCGACATCCCACA+CGG | + | chr6_1:2785696-2785715 | None:intergenic | 65.0% | |
| GGATGTCGGGGGTCAGGACA+AGG | - | chr6_1:2785700-2785719 | Msa0868950:intron | 65.0% | |
| CGTGTGGGATGTCGGGGGTC+AGG | - | chr6_1:2785694-2785713 | Msa0868950:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 2783409 | 2788162 | 2783409 | ID=Msa0868950;Name=Msa0868950 |
| chr6_1 | mRNA | 2783409 | 2788162 | 2783409 | ID=Msa0868950-mRNA-1;Parent=Msa0868950;Name=Msa0868950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.83|1|0.8|0.83|6|422|160 |
| chr6_1 | exon | 2783409 | 2783836 | 2783409 | ID=Msa0868950-mRNA-1:exon:847;Parent=Msa0868950-mRNA-1 |
| chr6_1 | exon | 2784161 | 2784242 | 2784161 | ID=Msa0868950-mRNA-1:exon:846;Parent=Msa0868950-mRNA-1 |
| chr6_1 | exon | 2784517 | 2784635 | 2784517 | ID=Msa0868950-mRNA-1:exon:845;Parent=Msa0868950-mRNA-1 |
| chr6_1 | exon | 2785201 | 2785320 | 2785201 | ID=Msa0868950-mRNA-1:exon:844;Parent=Msa0868950-mRNA-1 |
| chr6_1 | exon | 2785850 | 2785920 | 2785850 | ID=Msa0868950-mRNA-1:exon:843;Parent=Msa0868950-mRNA-1 |
| chr6_1 | exon | 2788078 | 2788162 | 2788078 | ID=Msa0868950-mRNA-1:exon:842;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2788078 | 2788162 | 2788078 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2785850 | 2785920 | 2785850 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2785201 | 2785320 | 2785201 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2784517 | 2784635 | 2784517 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2784161 | 2784242 | 2784161 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | CDS | 2783831 | 2783836 | 2783831 | ID=Msa0868950-mRNA-1:cds;Parent=Msa0868950-mRNA-1 |
| chr6_1 | three_prime_UTR | 2783409 | 2783830 | 2783409 | ID=Msa0868950-mRNA-1:three_prime_utr;Parent=Msa0868950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
