Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933170 | OMO59171.1 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 1.07e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933170 | sp|Q06396|ARF1_ORYSJ | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.00e-134 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933170 | A0A1R3GM71 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 5.13e-132 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0166990 | Msa0933170 | 0.806056 | 9.899135e-50 | -8.615850e-47 |
| Msa0868950 | Msa0933170 | 0.909624 | 4.636410e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933170 | MtrunA17_Chr6g0450081 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 1.76e-135 | 375 |
| Msa0933170 | MtrunA17_Chr5g0413451 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 7.56e-135 | 374 |
| Msa0933170 | MtrunA17_Chr5g0413441 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 7.56e-135 | 374 |
| Msa0933170 | MtrunA17_Chr7g0270301 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 9.95e-135 | 374 |
| Msa0933170 | MtrunA17_Chr1g0194261 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 2.15e-134 | 373 |
| Msa0933170 | MtrunA17_Chr5g0401761 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 7.52e-120 | 336 |
| Msa0933170 | MtrunA17_Chr4g0072861 | 63.128 | 179 | 66 | 0 | 1 | 179 | 1 | 179 | 8.16e-85 | 248 |
| Msa0933170 | MtrunA17_Chr5g0395631 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 3.55e-83 | 244 |
| Msa0933170 | MtrunA17_Chr4g0039591 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 1.53e-80 | 237 |
| Msa0933170 | MtrunA17_Chr5g0395641 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 1.54e-75 | 224 |
| Msa0933170 | MtrunA17_Chr1g0188111 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.03e-67 | 204 |
| Msa0933170 | MtrunA17_Chr8g0373271 | 49.091 | 165 | 81 | 3 | 18 | 180 | 17 | 180 | 2.13e-50 | 160 |
| Msa0933170 | MtrunA17_Chr2g0287721 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 3.69e-37 | 127 |
| Msa0933170 | MtrunA17_Chr5g0434561 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 7.03e-31 | 110 |
| Msa0933170 | MtrunA17_Chr5g0395651 | 63.291 | 79 | 27 | 1 | 1 | 77 | 1 | 79 | 1.28e-30 | 106 |
| Msa0933170 | MtrunA17_Chr5g0401071 | 32.609 | 184 | 121 | 2 | 1 | 181 | 1 | 184 | 1.49e-30 | 110 |
| Msa0933170 | MtrunA17_Chr4g0012371 | 31.707 | 164 | 111 | 1 | 18 | 180 | 1 | 164 | 1.72e-26 | 99.0 |
| Msa0933170 | MtrunA17_Chr2g0294701 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 8.48e-25 | 95.5 |
| Msa0933170 | MtrunA17_Chr7g0271761 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.17e-24 | 94.4 |
| Msa0933170 | MtrunA17_Chr4g0068171 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 6.03e-23 | 90.5 |
| Msa0933170 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 132 | 180 | 44 | 92 | 1.10e-12 | 61.2 |
| Msa0933170 | MtrunA17_Chr1g0180291 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.11e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933170 | AT1G10630.1 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 3.16e-134 | 373 |
| Msa0933170 | AT1G10630.2 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 3.16e-134 | 373 |
| Msa0933170 | AT5G14670.2 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.35e-134 | 372 |
| Msa0933170 | AT5G14670.3 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.35e-134 | 372 |
| Msa0933170 | AT2G47170.2 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.87e-134 | 372 |
| Msa0933170 | AT2G47170.1 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.87e-134 | 372 |
| Msa0933170 | AT2G47170.3 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.87e-134 | 372 |
| Msa0933170 | AT1G23490.1 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.2 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.7 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.4 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.3 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.1 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.6 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT1G70490.5 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.16e-133 | 370 |
| Msa0933170 | AT5G14670.1 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.85e-133 | 370 |
| Msa0933170 | AT3G62290.3 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.25e-132 | 369 |
| Msa0933170 | AT3G62290.1 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.25e-132 | 369 |
| Msa0933170 | AT3G62290.2 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.25e-132 | 369 |
| Msa0933170 | AT2G15310.1 | 66.851 | 181 | 60 | 0 | 1 | 181 | 1 | 181 | 2.11e-90 | 263 |
| Msa0933170 | AT2G24765.1 | 62.011 | 179 | 68 | 0 | 1 | 179 | 1 | 179 | 4.11e-85 | 249 |
| Msa0933170 | AT3G03120.1 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 3.87e-81 | 239 |
| Msa0933170 | AT5G17060.2 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.91e-81 | 239 |
| Msa0933170 | AT5G17060.1 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.91e-81 | 239 |
| Msa0933170 | AT3G22950.1 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.21e-70 | 212 |
| Msa0933170 | AT3G22950.2 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.21e-70 | 212 |
| Msa0933170 | AT2G24765.2 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.14e-60 | 185 |
| Msa0933170 | AT3G03120.2 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.66e-60 | 183 |
| Msa0933170 | AT1G02430.1 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.97e-57 | 177 |
| Msa0933170 | AT1G02440.1 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.18e-56 | 175 |
| Msa0933170 | AT2G18390.1 | 49.091 | 165 | 81 | 3 | 18 | 180 | 17 | 180 | 1.16e-49 | 159 |
| Msa0933170 | AT1G02430.2 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.33e-45 | 146 |
| Msa0933170 | AT5G52210.1 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.10e-36 | 124 |
| Msa0933170 | AT5G52210.2 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.10e-36 | 124 |
| Msa0933170 | AT3G49870.1 | 33.880 | 183 | 118 | 2 | 1 | 180 | 1 | 183 | 1.14e-32 | 115 |
| Msa0933170 | AT5G67560.1 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.47e-31 | 112 |
| Msa0933170 | AT5G37680.1 | 32.955 | 176 | 115 | 2 | 1 | 173 | 1 | 176 | 5.04e-30 | 108 |
| Msa0933170 | AT3G49870.2 | 32.927 | 164 | 109 | 1 | 18 | 180 | 1 | 164 | 1.95e-29 | 107 |
| Msa0933170 | AT3G49860.1 | 33.133 | 166 | 110 | 1 | 16 | 180 | 10 | 175 | 7.49e-29 | 105 |
| Msa0933170 | AT1G02440.2 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.06e-26 | 98.6 |
| Msa0933170 | AT1G09180.1 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 3.35e-25 | 96.7 |
| Msa0933170 | AT3G62560.1 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.34e-24 | 95.1 |
| Msa0933170 | AT5G37680.2 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.31e-24 | 92.4 |
| Msa0933170 | AT1G56330.1 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 5.16e-24 | 93.6 |
| Msa0933170 | AT4G02080.1 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.38e-24 | 93.6 |
Find 66 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGACATTTGAACAATTT+TGG | 0.068203 | 6_3:+1663898 | Msa0933170:exon |
| AAATAAGACCCTGGGTGTTC+TGG | 0.268231 | 6_3:-1662453 | None:intergenic |
| CAGAGCACTTGTGCAACTTC+TGG | 0.283751 | 6_3:+1663509 | Msa0933170:CDS |
| GGAACTCCTGCAATCTGTTT+TGG | 0.301867 | 6_3:+1664085 | Msa0933170:three_prime_UTR |
| AGAGGGTCTTTATGAGGGTT+TGG | 0.332698 | 6_3:+1663532 | Msa0933170:CDS |
| TTCTCCTCTTCAGTGTTACT+TGG | 0.341071 | 6_3:+1664018 | Msa0933170:three_prime_UTR |
| GCTTCACCGTGTGGGATGTC+GGG | 0.356155 | 6_3:+1661863 | Msa0933170:CDS |
| CAGTAGGTTGTTTGCGAAGA+AGG | 0.366217 | 6_3:+1659654 | Msa0933170:CDS |
| TTGCACGACAAAATTATTAC+TGG | 0.378528 | 6_3:-1664181 | None:intergenic |
| ATTTGATCATTTCCTGAGTC+TGG | 0.383921 | 6_3:+1663926 | Msa0933170:three_prime_UTR |
| TCTGCAGCATTCATTGCATT+TGG | 0.388382 | 6_3:-1663163 | None:intergenic |
| AGCTTCACCGTGTGGGATGT+CGG | 0.397098 | 6_3:+1661862 | Msa0933170:CDS |
| TTCTGGAGAGGGTCTTTATG+AGG | 0.405541 | 6_3:+1663526 | Msa0933170:CDS |
| CAAGTGGAATATTGTAATAG+AGG | 0.422816 | 6_3:+1663978 | Msa0933170:three_prime_UTR |
| GCGATTTGTGTAGGTGAAGA+TGG | 0.448083 | 6_3:+1659609 | Msa0933170:intron |
| GGCACACCAAAACAGATTGC+AGG | 0.470039 | 6_3:-1664091 | None:intergenic |
| CGATTTGTGTAGGTGAAGAT+GGG | 0.477607 | 6_3:+1659610 | Msa0933170:exon |
| GTCTTTATGAGGGTTTGGAC+TGG | 0.477919 | 6_3:+1663537 | Msa0933170:CDS |
| TCTCCTCTTCAGTGTTACTT+GGG | 0.479131 | 6_3:+1664019 | Msa0933170:three_prime_UTR |
| ATTCTCTCCGCCAACGCCAC+TGG | 0.484693 | 6_3:+1663209 | Msa0933170:CDS |
| CTTCACCGTGTGGGATGTCG+GGG | 0.486668 | 6_3:+1661864 | Msa0933170:CDS |
| GGAAGTAATGCCTCCACAAT+GGG | 0.487329 | 6_3:-1662432 | None:intergenic |
| TTCTAACAACATTGCAAGCA+AGG | 0.487356 | 6_3:+1663562 | Msa0933170:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.492492 | 6_3:-1663146 | None:intergenic |
| CTTCATACCAGTGGCGTTGG+CGG | 0.492667 | 6_3:-1663216 | None:intergenic |
| AGACCGAGTGGTTGAGGCAA+GGG | 0.502924 | 6_3:+1662498 | Msa0933170:CDS |
| ATTACAATATTCCACTTGAA+AGG | 0.510227 | 6_3:-1663973 | None:intergenic |
| AAATGAGAATGTTTATGATA+CGG | 0.510550 | 6_3:-1659157 | None:intergenic |
| TGATAGAGACCGAGTGGTTG+AGG | 0.512695 | 6_3:+1662492 | Msa0933170:CDS |
| TGATCATTTCCTGAGTCTGG+TGG | 0.532492 | 6_3:+1663929 | Msa0933170:three_prime_UTR |
| AGTCTGGTGGTTCTTGAAGA+AGG | 0.539082 | 6_3:+1663942 | Msa0933170:three_prime_UTR |
| CGTTCACGAAGCTGTTCAGT+AGG | 0.541353 | 6_3:+1659638 | Msa0933170:CDS |
| GTTACTACCATCCCTACCAT+TGG | 0.542784 | 6_3:+1659754 | Msa0933170:CDS |
| ATGGTAGGTCTCGATGCGGC+TGG | 0.552532 | 6_3:+1659691 | Msa0933170:CDS |
| GCAGAAATAACTGACAAACT+TGG | 0.552853 | 6_3:+1663181 | Msa0933170:CDS |
| CTTCAAGAACCACCAGACTC+AGG | 0.557629 | 6_3:-1663938 | None:intergenic |
| TATCGGTTGAATAATTCTGA+AGG | 0.558514 | 6_3:+1664139 | Msa0933170:three_prime_UTR |
| TCTGGAGAGGGTCTTTATGA+GGG | 0.558851 | 6_3:+1663527 | Msa0933170:CDS |
| CATCCCTTGCCTCAACCACT+CGG | 0.565995 | 6_3:-1662501 | None:intergenic |
| GATCTTCATACCAGTGGCGT+TGG | 0.567883 | 6_3:-1663219 | None:intergenic |
| AACTAGTAAAATTAACATGA+AGG | 0.568565 | 6_3:-1664112 | None:intergenic |
| ATCTGCAGATCCGCCCATTG+TGG | 0.576990 | 6_3:+1662419 | Msa0933170:intron |
| AAACCCAAGTAACACTGAAG+AGG | 0.579085 | 6_3:-1664022 | None:intergenic |
| GCTGATGTTCTTGTACTCCA+CGG | 0.581443 | 6_3:-1661842 | None:intergenic |
| AGGCAAGGGATGAATTGCAC+AGG | 0.586704 | 6_3:+1662512 | Msa0933170:CDS |
| GTATTGAACTAACCAATGGT+AGG | 0.587944 | 6_3:-1659766 | None:intergenic |
| TGCAGATCCGCCCATTGTGG+AGG | 0.589244 | 6_3:+1662422 | Msa0933170:intron |
| TATTGAACTAACCAATGGTA+GGG | 0.589286 | 6_3:-1659765 | None:intergenic |
| GAACTAACCAATGGTAGGGA+TGG | 0.590928 | 6_3:-1659761 | None:intergenic |
| TGGAAGTAATGCCTCCACAA+TGG | 0.593003 | 6_3:-1662433 | None:intergenic |
| GAGACCGAGTGGTTGAGGCA+AGG | 0.594397 | 6_3:+1662497 | Msa0933170:CDS |
| CACTTGTGCAACTTCTGGAG+AGG | 0.598038 | 6_3:+1663514 | Msa0933170:CDS |
| ACTTGTGCAACTTCTGGAGA+GGG | 0.603681 | 6_3:+1663515 | Msa0933170:CDS |
| TGGATCTCAGCGATTTGTGT+AGG | 0.607269 | 6_3:+1659600 | Msa0933170:intron |
| AGTAATGCCTCCACAATGGG+CGG | 0.622929 | 6_3:-1662429 | None:intergenic |
| AGGATTTAATGTTGAAACCG+TGG | 0.626322 | 6_3:+1661825 | Msa0933170:intron |
| GAACATCAGCTTCACCGTGT+GGG | 0.628419 | 6_3:+1661855 | Msa0933170:CDS |
| CATTACTTCCAGAACACCCA+GGG | 0.648785 | 6_3:+1662445 | Msa0933170:CDS |
| TTCACCGTGTGGGATGTCGG+GGG | 0.658294 | 6_3:+1661865 | Msa0933170:CDS |
| AGAACATCAGCTTCACCGTG+TGG | 0.663793 | 6_3:+1661854 | Msa0933170:CDS |
| GCGTCTTCATAGAATCAGCA+AGG | 0.667691 | 6_3:+1664285 | Msa0933170:three_prime_UTR |
| GCATTACTTCCAGAACACCC+AGG | 0.681110 | 6_3:+1662444 | Msa0933170:CDS |
| GATTTGTGTAGGTGAAGATG+GGG | 0.682756 | 6_3:+1659611 | Msa0933170:exon |
| ATTGCACAGGATGTTGAATG+AGG | 0.696400 | 6_3:+1662525 | Msa0933170:CDS |
| TTTGATGGTAGGTCTCGATG+CGG | 0.707868 | 6_3:+1659687 | Msa0933170:CDS |
| TAGCAATGATAGAGACCGAG+TGG | 0.713240 | 6_3:+1662486 | Msa0933170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATGATAATTAAAATAAT+TGG | + | chr6_3:1660009-1660028 | Msa0933170:intron | 10.0% |
| !!! | AACAATAATTTTTTTCAATT+GGG | + | chr6_3:1660549-1660568 | Msa0933170:intron | 10.0% |
| !!! | TATGATTAGTTATTAATAAA+TGG | + | chr6_3:1661375-1661394 | Msa0933170:intron | 10.0% |
| !! | GTATATATCTATATAATAAT+TGG | + | chr6_3:1661785-1661804 | Msa0933170:intron | 10.0% |
| !!! | AAAATATATTACTTTGTTTT+CGG | + | chr6_3:1662649-1662668 | Msa0933170:intron | 10.0% |
| !!! | ATTTTGATGATTGATTATTA+TGG | + | chr6_3:1659571-1659590 | Msa0933170:intron | 15.0% |
| !! | TAAAAATCAATATTGAGAAA+GGG | - | chr6_3:1659791-1659810 | None:intergenic | 15.0% |
| !! | ATCTACATAATTATAACATA+AGG | - | chr6_3:1659920-1659939 | None:intergenic | 15.0% |
| !!! | TCACATCATATTTAATTTAA+TGG | - | chr6_3:1660127-1660146 | None:intergenic | 15.0% |
| !!! | GAACAATAATTTTTTTCAAT+TGG | + | chr6_3:1660548-1660567 | Msa0933170:intron | 15.0% |
| !! | TATTAATAACTAATCATAAG+TGG | - | chr6_3:1661373-1661392 | None:intergenic | 15.0% |
| !!! | ACAAAGTAATATATTTTTAG+AGG | - | chr6_3:1662646-1662665 | None:intergenic | 15.0% |
| !!! | AAATATATTACTTTGTTTTC+GGG | + | chr6_3:1662650-1662669 | Msa0933170:intron | 15.0% |
| !! | TTACCATTATACATAATTAA+AGG | + | chr6_3:1663007-1663026 | Msa0933170:intron | 15.0% |
| !! | ATATTGGAAATATATAATGT+TGG | + | chr6_3:1663058-1663077 | Msa0933170:intron | 15.0% |
| !! | AAAATGTTAAATCATAATTG+AGG | - | chr6_3:1663306-1663325 | None:intergenic | 15.0% |
| !!! | TCTTTTATATAATACTATCT+TGG | + | chr6_3:1663325-1663344 | Msa0933170:intron | 15.0% |
| !! | ATGTATTATTTGTATATATG+AGG | + | chr6_3:1663839-1663858 | Msa0933170:intron | 15.0% |
| !!! | AATTTTACTAGTTTGATTAT+CGG | + | chr6_3:1664122-1664141 | Msa0933170:three_prime_UTR | 15.0% |
| !!! | TTTTTGTTATAAGATGTAAA+AGG | + | chr6_3:1664243-1664262 | Msa0933170:three_prime_UTR | 15.0% |
| !! | AAATGAGAATGTTTATGATA+CGG | - | chr6_3:1659160-1659179 | None:intergenic | 20.0% |
| !!! | GATTGAATTGATGAATTTTT+TGG | + | chr6_3:1659538-1659557 | Msa0933170:intron | 20.0% |
| !!! | ATTTTGTATAAATTGAAGCT+TGG | + | chr6_3:1659724-1659743 | Msa0933170:CDS | 20.0% |
| !! | GTAAAAATCAATATTGAGAA+AGG | - | chr6_3:1659792-1659811 | None:intergenic | 20.0% |
| !!! | ATCTCAATGATAAATTTTAC+AGG | - | chr6_3:1659954-1659973 | None:intergenic | 20.0% |
| !!! | TTTAAAGATCTAAAACAAAC+AGG | - | chr6_3:1660241-1660260 | None:intergenic | 20.0% |
| !! | AAAAGAGATGTAAAATAGTT+AGG | + | chr6_3:1660459-1660478 | Msa0933170:intron | 20.0% |
| !! | AAAGAGATGTAAAATAGTTA+GGG | + | chr6_3:1660460-1660479 | Msa0933170:intron | 20.0% |
| !! | TAAAATAGTTAGGGATATAT+TGG | + | chr6_3:1660469-1660488 | Msa0933170:intron | 20.0% |
| !!! | TATTTATGCATGTTTGTTAA+AGG | + | chr6_3:1660599-1660618 | Msa0933170:intron | 20.0% |
| !! | ATACTATAACATCTTCTAAA+TGG | - | chr6_3:1660726-1660745 | None:intergenic | 20.0% |
| !! | ATAAATCCAAGTTGTATAAA+CGG | - | chr6_3:1661401-1661420 | None:intergenic | 20.0% |
| !! | GTTAAAATTCAGAAATTTGA+AGG | - | chr6_3:1661484-1661503 | None:intergenic | 20.0% |
| !! | TAAAGTTGTTAGATAAAGAT+CGG | - | chr6_3:1661552-1661571 | None:intergenic | 20.0% |
| !!! | TGGAATAATTTTTTATCTAC+AGG | + | chr6_3:1661805-1661824 | Msa0933170:intron | 20.0% |
| !!! | TATTCCATTACAATGTTTTT+TGG | + | chr6_3:1662352-1662371 | Msa0933170:intron | 20.0% |
| !!! | ATTCCATTACAATGTTTTTT+GGG | + | chr6_3:1662353-1662372 | Msa0933170:intron | 20.0% |
| !!! | ACACTTTTTTCAATATAATG+AGG | + | chr6_3:1662381-1662400 | Msa0933170:intron | 20.0% |
| !!! | CACTTTTTTCAATATAATGA+GGG | + | chr6_3:1662382-1662401 | Msa0933170:intron | 20.0% |
| !!! | ATTATTTTTGCTAGTTTTCT+GGG | - | chr6_3:1662771-1662790 | None:intergenic | 20.0% |
| !!! | AATTATTTTTGCTAGTTTTC+TGG | - | chr6_3:1662772-1662791 | None:intergenic | 20.0% |
| !!! | TTTTATTGTAGGTATGTTTT+TGG | + | chr6_3:1662869-1662888 | Msa0933170:intron | 20.0% |
| !! | TTTATATAATACTATCTTGG+AGG | + | chr6_3:1663328-1663347 | Msa0933170:intron | 20.0% |
| !! | TTATATAATACTATCTTGGA+GGG | + | chr6_3:1663329-1663348 | Msa0933170:intron | 20.0% |
| !! | ATTGTATTATAAGTATGCAA+AGG | + | chr6_3:1663714-1663733 | Msa0933170:intron | 20.0% |
| !! | AACTAGTAAAATTAACATGA+AGG | - | chr6_3:1664115-1664134 | None:intergenic | 20.0% |
| !! | TTTTCTTATTGAATCGCTTT+TGG | + | chr6_3:1659374-1659393 | Msa0933170:intron | 25.0% |
| ! | ATTGATTATTATGGATCTTG+TGG | + | chr6_3:1659580-1659599 | Msa0933170:intron | 25.0% |
| ! | AACAAAATATTCACACTCAT+AGG | + | chr6_3:1659975-1659994 | Msa0933170:intron | 25.0% |
| ! | AATAATTGGTCGTTGTATTA+AGG | + | chr6_3:1660023-1660042 | Msa0933170:intron | 25.0% |
| ! | TTGTATTAAGGCAAATTCTA+TGG | + | chr6_3:1660035-1660054 | Msa0933170:intron | 25.0% |
| ! | CATAACTAAAACGTCAAAAA+TGG | - | chr6_3:1660266-1660285 | None:intergenic | 25.0% |
| ! | TGTGTAAGATATTCACAAAT+TGG | + | chr6_3:1660290-1660309 | Msa0933170:intron | 25.0% |
| ! | ATATATCAATCCATTATGCA+GGG | - | chr6_3:1660668-1660687 | None:intergenic | 25.0% |
| ! | TCTTCTAAATGGAGAAATAA+AGG | - | chr6_3:1660715-1660734 | None:intergenic | 25.0% |
| !! | GTTTTATATAACAGTCAATG+TGG | + | chr6_3:1661163-1661182 | Msa0933170:intron | 25.0% |
| ! | TATACAACTTGGATTTATCA+TGG | + | chr6_3:1661403-1661422 | Msa0933170:intron | 25.0% |
| ! | TATCATGGTAATAAAACTAC+TGG | + | chr6_3:1661418-1661437 | Msa0933170:intron | 25.0% |
| !! | TCACAATTTCTAGATTTCAA+TGG | - | chr6_3:1661675-1661694 | None:intergenic | 25.0% |
| ! | GAAATCTAGAAATTGTGAAT+TGG | + | chr6_3:1661677-1661696 | Msa0933170:intron | 25.0% |
| ! | TACATTAGAAACACAATTTG+TGG | - | chr6_3:1661746-1661765 | None:intergenic | 25.0% |
| ! | AATGTACATATGTCATCTTA+TGG | + | chr6_3:1661760-1661779 | Msa0933170:intron | 25.0% |
| ! | AATAAAAGACGTAGGTAAAA+AGG | + | chr6_3:1662093-1662112 | Msa0933170:intron | 25.0% |
| ! | ATAAAAGACGTAGGTAAAAA+GGG | + | chr6_3:1662094-1662113 | Msa0933170:intron | 25.0% |
| ! | AAACCCAAAAAACATTGTAA+TGG | - | chr6_3:1662359-1662378 | None:intergenic | 25.0% |
| ! | TCATACAAGATAAACAACAA+AGG | - | chr6_3:1662575-1662594 | None:intergenic | 25.0% |
| !! | ATCAACCAAGATTTTATTGT+AGG | + | chr6_3:1662858-1662877 | Msa0933170:intron | 25.0% |
| ! | ACATACCTACAATAAAATCT+TGG | - | chr6_3:1662866-1662885 | None:intergenic | 25.0% |
| !!! | TATGTTTTTGGTGTTCTTAA+TGG | + | chr6_3:1662881-1662900 | Msa0933170:intron | 25.0% |
| ! | ATTCATAGTTTCACACTATA+TGG | + | chr6_3:1662921-1662940 | Msa0933170:intron | 25.0% |
| ! | CAGCCTTTAATTATGTATAA+TGG | - | chr6_3:1663013-1663032 | None:intergenic | 25.0% |
| !! | AGTGATAGTCTTAAGTATAT+TGG | + | chr6_3:1663042-1663061 | Msa0933170:intron | 25.0% |
| ! | ATTATGTAGATGATACTAGT+TGG | + | chr6_3:1663629-1663648 | Msa0933170:intron | 25.0% |
| ! | ATAAGTATGCAAAGGTTAAA+AGG | + | chr6_3:1663722-1663741 | Msa0933170:intron | 25.0% |
| ! | AAGGAGAAATGTAATATGTA+AGG | + | chr6_3:1663741-1663760 | Msa0933170:intron | 25.0% |
| ! | TGAGTTACAATAAAAAAGGT+AGG | - | chr6_3:1663872-1663891 | None:intergenic | 25.0% |
| !!! | TACCTTTTTTATTGTAACTC+AGG | + | chr6_3:1663871-1663890 | Msa0933170:intron | 25.0% |
| !! | ATGAGACATTTGAACAATTT+TGG | + | chr6_3:1663898-1663917 | Msa0933170:exon | 25.0% |
| !! | TGAGACATTTGAACAATTTT+GGG | + | chr6_3:1663899-1663918 | Msa0933170:three_prime_UTR | 25.0% |
| ! | ATTACAATATTCCACTTGAA+AGG | - | chr6_3:1663976-1663995 | None:intergenic | 25.0% |
| !!! | CTAATACTTTTAGCTGTAAT+TGG | + | chr6_3:1664064-1664083 | Msa0933170:three_prime_UTR | 25.0% |
| TATTGAACTAACCAATGGTA+GGG | - | chr6_3:1659768-1659787 | None:intergenic | 30.0% | |
| CACAAATTTATTTCCACCAT+TGG | + | chr6_3:1660087-1660106 | Msa0933170:intron | 30.0% | |
| TTAGACAAAGCCCATATTAA+AGG | + | chr6_3:1660215-1660234 | Msa0933170:intron | 30.0% | |
| AACAAACAGGCCTTTAATAT+GGG | - | chr6_3:1660228-1660247 | None:intergenic | 30.0% | |
| AAACAAACAGGCCTTTAATA+TGG | - | chr6_3:1660229-1660248 | None:intergenic | 30.0% | |
| ! | TCTCTTTTTGTTAGTAGCAA+TGG | - | chr6_3:1660447-1660466 | None:intergenic | 30.0% |
| !! | TTCTTGCTGTCTCTTTTAAT+AGG | - | chr6_3:1660531-1660550 | None:intergenic | 30.0% |
| !!! | AATTTGACCCATTTTTCAAG+AGG | + | chr6_3:1660639-1660658 | Msa0933170:intron | 30.0% |
| !!! | ATTTGACCCATTTTTCAAGA+GGG | + | chr6_3:1660640-1660659 | Msa0933170:intron | 30.0% |
| TATATCAATCCATTATGCAG+GGG | - | chr6_3:1660667-1660686 | None:intergenic | 30.0% | |
| CATATATCAATCCATTATGC+AGG | - | chr6_3:1660669-1660688 | None:intergenic | 30.0% | |
| ! | ATGGATTGATATATGAAAGC+TGG | + | chr6_3:1660674-1660693 | Msa0933170:intron | 30.0% |
| GTTTGAATAGGAAAAGAAGA+TGG | - | chr6_3:1660935-1660954 | None:intergenic | 30.0% | |
| !! | GTAAAGAAAATGGGTTTTGA+TGG | - | chr6_3:1660972-1660991 | None:intergenic | 30.0% |
| TCATAGTGTTAGAAGAAGAA+AGG | + | chr6_3:1661034-1661053 | Msa0933170:intron | 30.0% | |
| CATAGTGTTAGAAGAAGAAA+GGG | + | chr6_3:1661035-1661054 | Msa0933170:intron | 30.0% | |
| !! | TTCCATTTTAAAGATTGCGT+TGG | + | chr6_3:1661314-1661333 | Msa0933170:intron | 30.0% |
| !! | TCCATTTTAAAGATTGCGTT+GGG | + | chr6_3:1661315-1661334 | Msa0933170:intron | 30.0% |
| TTTGAAGGATGTTTATCTCA+GGG | - | chr6_3:1661469-1661488 | None:intergenic | 30.0% | |
| ATTTGAAGGATGTTTATCTC+AGG | - | chr6_3:1661470-1661489 | None:intergenic | 30.0% | |
| TGTATTCTAAACGTGAACTT+AGG | + | chr6_3:1661514-1661533 | Msa0933170:intron | 30.0% | |
| TATACAAGCTTCCATAATGT+GGG | + | chr6_3:1662006-1662025 | Msa0933170:intron | 30.0% | |
| ! | ACTCTGTCACTTAATAATAG+TGG | - | chr6_3:1662069-1662088 | None:intergenic | 30.0% |
| TAAAAGACGTAGGTAAAAAG+GGG | + | chr6_3:1662095-1662114 | Msa0933170:intron | 30.0% | |
| ! | TTGCTACATCGTTTCATTTT+AGG | + | chr6_3:1662220-1662239 | Msa0933170:intron | 30.0% |
| TTCGAACATCGATCAAAATA+AGG | - | chr6_3:1662260-1662279 | None:intergenic | 30.0% | |
| ! | CATTGTAATGGAATACACAT+GGG | - | chr6_3:1662347-1662366 | None:intergenic | 30.0% |
| ! | ACATTGTAATGGAATACACA+TGG | - | chr6_3:1662348-1662367 | None:intergenic | 30.0% |
| TAGCAACTCTATAGACTTAA+TGG | + | chr6_3:1662817-1662836 | Msa0933170:intron | 30.0% | |
| AGCAACTCTATAGACTTAAT+GGG | + | chr6_3:1662818-1662837 | Msa0933170:intron | 30.0% | |
| TATATAACAAACATCTGCAG+AGG | - | chr6_3:1662966-1662985 | None:intergenic | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr6_3:1663149-1663168 | None:intergenic | 30.0% |
| !! | TCCATTTTTAATGCAATGAC+TGG | + | chr6_3:1663468-1663487 | Msa0933170:intron | 30.0% |
| TCCAGTCATTGCATTAAAAA+TGG | - | chr6_3:1663472-1663491 | None:intergenic | 30.0% | |
| ATTTGTTCCAGAAAAACAAG+AGG | - | chr6_3:1663696-1663715 | None:intergenic | 30.0% | |
| TGCCTGAGTTACAATAAAAA+AGG | - | chr6_3:1663876-1663895 | None:intergenic | 30.0% | |
| CAAGTGGAATATTGTAATAG+AGG | + | chr6_3:1663978-1663997 | Msa0933170:three_prime_UTR | 30.0% | |
| ! | TATCGGTTGAATAATTCTGA+AGG | + | chr6_3:1664139-1664158 | Msa0933170:three_prime_UTR | 30.0% |
| !! | AATTCTGAAGGTTCTGTTTT+TGG | + | chr6_3:1664151-1664170 | Msa0933170:three_prime_UTR | 30.0% |
| TTGCACGACAAAATTATTAC+TGG | - | chr6_3:1664184-1664203 | None:intergenic | 30.0% | |
| CTCAGATCGAAGAAAAAAAG+AGG | + | chr6_3:1659262-1659281 | Msa0933170:five_prime_UTR | 35.0% | |
| ! | GAAGGAGATGAGAATTTTGA+TGG | + | chr6_3:1659672-1659691 | Msa0933170:CDS | 35.0% |
| !! | GAGATGAGAATTTTGATGGT+AGG | + | chr6_3:1659676-1659695 | Msa0933170:CDS | 35.0% |
| GTATTGAACTAACCAATGGT+AGG | - | chr6_3:1659769-1659788 | None:intergenic | 35.0% | |
| !! | AAGGGTATTGAACTAACCAA+TGG | - | chr6_3:1659773-1659792 | None:intergenic | 35.0% |
| GTGACTTTATGATCAAATGC+TGG | + | chr6_3:1660143-1660162 | Msa0933170:intron | 35.0% | |
| AATTAATCCCTGCTCTTGAA+TGG | - | chr6_3:1660416-1660435 | None:intergenic | 35.0% | |
| ! | TCAATTGGGTCTTGTGTTTA+TGG | + | chr6_3:1660563-1660582 | Msa0933170:intron | 35.0% |
| ! | CAATTGGGTCTTGTGTTTAT+GGG | + | chr6_3:1660564-1660583 | Msa0933170:intron | 35.0% |
| ! | GCAATATGTCTTTTCTCTGT+TGG | - | chr6_3:1660863-1660882 | None:intergenic | 35.0% |
| GATTCAACGAGAGTTTGAAT+AGG | - | chr6_3:1660947-1660966 | None:intergenic | 35.0% | |
| AAGTTGGCGGTAAAGAAAAT+GGG | - | chr6_3:1660981-1661000 | None:intergenic | 35.0% | |
| ! | TAAGTTGGCGGTAAAGAAAA+TGG | - | chr6_3:1660982-1661001 | None:intergenic | 35.0% |
| CTTCTAACACTATGACTTCT+TGG | - | chr6_3:1661029-1661048 | None:intergenic | 35.0% | |
| ! | ATCCTTGAACATTTGTTGCT+AGG | + | chr6_3:1661190-1661209 | Msa0933170:intron | 35.0% |
| AGATACTACTTTCATCCCTA+AGG | - | chr6_3:1661263-1661282 | None:intergenic | 35.0% | |
| !! | CCATTTTAAAGATTGCGTTG+GGG | + | chr6_3:1661316-1661335 | Msa0933170:intron | 35.0% |
| AAATGGCCGTTTATACAACT+TGG | + | chr6_3:1661392-1661411 | Msa0933170:intron | 35.0% | |
| GTGAACTTAGGAATGTTAGT+TGG | + | chr6_3:1661526-1661545 | Msa0933170:intron | 35.0% | |
| TGATACTTGTGCAATCATTG+TGG | - | chr6_3:1661584-1661603 | None:intergenic | 35.0% | |
| !!! | GTGTTTTTTGTTTGCGTTTC+AGG | + | chr6_3:1661623-1661642 | Msa0933170:intron | 35.0% |
| AGGATTTAATGTTGAAACCG+TGG | + | chr6_3:1661825-1661844 | Msa0933170:intron | 35.0% | |
| TGTCTATTATGCTTGTTTCC+TGG | + | chr6_3:1661915-1661934 | Msa0933170:intron | 35.0% | |
| CTATACAAGCTTCCATAATG+TGG | + | chr6_3:1662005-1662024 | Msa0933170:intron | 35.0% | |
| GAGTGAAGAATAAAAGACGT+AGG | + | chr6_3:1662085-1662104 | Msa0933170:intron | 35.0% | |
| AAAAGACGTAGGTAAAAAGG+GGG | + | chr6_3:1662096-1662115 | Msa0933170:intron | 35.0% | |
| TTATGTACTGTGTATGACTG+TGG | + | chr6_3:1662306-1662325 | Msa0933170:intron | 35.0% | |
| AACCACAAAAATAAGACCCT+GGG | - | chr6_3:1662464-1662483 | None:intergenic | 35.0% | |
| ACATGCAAAAGTAACTACGA+AGG | - | chr6_3:1662614-1662633 | None:intergenic | 35.0% | |
| ! | ATGCTTGACAACACTTTTGT+TGG | + | chr6_3:1662703-1662722 | Msa0933170:intron | 35.0% |
| ! | TGCTTGACAACACTTTTGTT+GGG | + | chr6_3:1662704-1662723 | Msa0933170:intron | 35.0% |
| AGTCTATAGAGTTGCTATCA+AGG | - | chr6_3:1662814-1662833 | None:intergenic | 35.0% | |
| ! | TTCACACTATATGGTTTGCA+CGG | + | chr6_3:1662930-1662949 | Msa0933170:intron | 35.0% |
| ATAATGTTGGTATGTGAACC+TGG | + | chr6_3:1663071-1663090 | Msa0933170:intron | 35.0% | |
| CTGAAACAAAATTACCATCC+AGG | - | chr6_3:1663092-1663111 | None:intergenic | 35.0% | |
| !! | CTGGATGGTAATTTTGTTTC+AGG | + | chr6_3:1663090-1663109 | Msa0933170:intron | 35.0% |
| GCAGAAATAACTGACAAACT+TGG | + | chr6_3:1663181-1663200 | Msa0933170:CDS | 35.0% | |
| ! | CTCTTGGTGATTAGTTAATC+TGG | - | chr6_3:1663431-1663450 | None:intergenic | 35.0% |
| GCAATGACTGGATTTATTTC+AGG | + | chr6_3:1663480-1663499 | Msa0933170:intron | 35.0% | |
| TTCTAACAACATTGCAAGCA+AGG | + | chr6_3:1663562-1663581 | Msa0933170:CDS | 35.0% | |
| !! | AGTTGGATGATTTGTTCACT+TGG | + | chr6_3:1663646-1663665 | Msa0933170:intron | 35.0% |
| ATTTGATCATTTCCTGAGTC+TGG | + | chr6_3:1663926-1663945 | Msa0933170:three_prime_UTR | 35.0% | |
| CGATTTGTGTAGGTGAAGAT+GGG | + | chr6_3:1659610-1659629 | Msa0933170:exon | 40.0% | |
| GATTTGTGTAGGTGAAGATG+GGG | + | chr6_3:1659611-1659630 | Msa0933170:exon | 40.0% | |
| GAGATTCATTGATCCAATGG+TGG | - | chr6_3:1660103-1660122 | None:intergenic | 40.0% | |
| GGTGAGATTCATTGATCCAA+TGG | - | chr6_3:1660106-1660125 | None:intergenic | 40.0% | |
| AAGTTTGCCATTCAAGAGCA+GGG | + | chr6_3:1660406-1660425 | Msa0933170:intron | 40.0% | |
| CTTGTGTTTATGGGTGGTAA+AGG | + | chr6_3:1660573-1660592 | Msa0933170:intron | 40.0% | |
| CTGTAACAGATATGGTTGGA+CGG | - | chr6_3:1660891-1660910 | None:intergenic | 40.0% | |
| TCCAACCATATCTGTTACAG+AGG | + | chr6_3:1660891-1660910 | Msa0933170:intron | 40.0% | |
| ACCTCTGTAACAGATATGGT+TGG | - | chr6_3:1660895-1660914 | None:intergenic | 40.0% | |
| AGAGGTGAGCCATTATATCA+CGG | + | chr6_3:1660909-1660928 | Msa0933170:intron | 40.0% | |
| AGAAGATGGCCGTGATATAA+TGG | - | chr6_3:1660921-1660940 | None:intergenic | 40.0% | |
| TTTACCGCCAACTTATGTGT+TGG | + | chr6_3:1660987-1661006 | Msa0933170:intron | 40.0% | |
| TTACCGCCAACTTATGTGTT+GGG | + | chr6_3:1660988-1661007 | Msa0933170:intron | 40.0% | |
| CAAGTTCCCAACACATAAGT+TGG | - | chr6_3:1660997-1661016 | None:intergenic | 40.0% | |
| ! | ATTTTAGACACCAGCTGAAC+CGG | + | chr6_3:1661123-1661142 | Msa0933170:intron | 40.0% |
| ACCATGTACAAGATACTACC+CGG | - | chr6_3:1661145-1661164 | None:intergenic | 40.0% | |
| CTCCTAGCAACAAATGTTCA+AGG | - | chr6_3:1661195-1661214 | None:intergenic | 40.0% | |
| TCCGTAGATCAATGATCCTT+AGG | + | chr6_3:1661244-1661263 | Msa0933170:intron | 40.0% | |
| CCCTAAGGATCATTGATCTA+CGG | - | chr6_3:1661248-1661267 | None:intergenic | 40.0% | |
| CCGTAGATCAATGATCCTTA+GGG | + | chr6_3:1661245-1661264 | Msa0933170:intron | 40.0% | |
| ! | CCCCAACGCAATCTTTAAAA+TGG | - | chr6_3:1661319-1661338 | None:intergenic | 40.0% |
| CAACCACAAAAATAAGACCC+TGG | - | chr6_3:1662465-1662484 | None:intergenic | 40.0% | |
| ATTGCACAGGATGTTGAATG+AGG | + | chr6_3:1662525-1662544 | Msa0933170:CDS | 40.0% | |
| ! | GCTTGACAACACTTTTGTTG+GGG | + | chr6_3:1662705-1662724 | Msa0933170:intron | 40.0% |
| ! | CTTGACAACACTTTTGTTGG+GGG | + | chr6_3:1662706-1662725 | Msa0933170:intron | 40.0% |
| AACAAACATCTGCAGAGGAA+GGG | - | chr6_3:1662961-1662980 | None:intergenic | 40.0% | |
| TAACAAACATCTGCAGAGGA+AGG | - | chr6_3:1662962-1662981 | None:intergenic | 40.0% | |
| TCTGCAGCATTCATTGCATT+TGG | - | chr6_3:1663166-1663185 | None:intergenic | 40.0% | |
| AGATCAGATCTTCATACCAG+TGG | - | chr6_3:1663228-1663247 | None:intergenic | 40.0% | |
| ! | TTGGTTGTTGTTGTTGTGGA+GGG | + | chr6_3:1663386-1663405 | Msa0933170:intron | 40.0% |
| AAAAACAAGAGGATGGAGAG+TGG | - | chr6_3:1663685-1663704 | None:intergenic | 40.0% | |
| !!! | TCTCCATCCTCTTGTTTTTC+TGG | + | chr6_3:1663686-1663705 | Msa0933170:intron | 40.0% |
| GTTCCAGAAAAACAAGAGGA+TGG | - | chr6_3:1663692-1663711 | None:intergenic | 40.0% | |
| ! | AGGATGCTTTTCCTTTCAAG+TGG | + | chr6_3:1663962-1663981 | Msa0933170:three_prime_UTR | 40.0% |
| ! | TTCTCCTCTTCAGTGTTACT+TGG | + | chr6_3:1664018-1664037 | Msa0933170:three_prime_UTR | 40.0% |
| !! | TCTCCTCTTCAGTGTTACTT+GGG | + | chr6_3:1664019-1664038 | Msa0933170:three_prime_UTR | 40.0% |
| AAACCCAAGTAACACTGAAG+AGG | - | chr6_3:1664025-1664044 | None:intergenic | 40.0% | |
| TGGATCTCAGCGATTTGTGT+AGG | + | chr6_3:1659600-1659619 | Msa0933170:intron | 45.0% | |
| GCGATTTGTGTAGGTGAAGA+TGG | + | chr6_3:1659609-1659628 | Msa0933170:intron | 45.0% | |
| CAGTAGGTTGTTTGCGAAGA+AGG | + | chr6_3:1659654-1659673 | Msa0933170:CDS | 45.0% | |
| ! | TTTGATGGTAGGTCTCGATG+CGG | + | chr6_3:1659687-1659706 | Msa0933170:CDS | 45.0% |
| GTTACTACCATCCCTACCAT+TGG | + | chr6_3:1659754-1659773 | Msa0933170:CDS | 45.0% | |
| GAACTAACCAATGGTAGGGA+TGG | - | chr6_3:1659764-1659783 | None:intergenic | 45.0% | |
| AACAAAGACACCACCTGACA+CGG | - | chr6_3:1659876-1659895 | None:intergenic | 45.0% | |
| CAAGTTTGCCATTCAAGAGC+AGG | + | chr6_3:1660405-1660424 | Msa0933170:intron | 45.0% | |
| ! | TTGGGTCTTGTGTTTATGGG+TGG | + | chr6_3:1660567-1660586 | Msa0933170:intron | 45.0% |
| AGGGGACCCTCTTGAAAAAT+GGG | - | chr6_3:1660649-1660668 | None:intergenic | 45.0% | |
| GCTCACCTCTGTAACAGATA+TGG | - | chr6_3:1660899-1660918 | None:intergenic | 45.0% | |
| ! | GTTCCCAACACATAAGTTGG+CGG | - | chr6_3:1660994-1661013 | None:intergenic | 45.0% |
| ! | TTTTAGACACCAGCTGAACC+GGG | + | chr6_3:1661124-1661143 | Msa0933170:intron | 45.0% |
| ACCGGGTAGTATCTTGTACA+TGG | + | chr6_3:1661141-1661160 | Msa0933170:intron | 45.0% | |
| !! | GAGAGTGTCAAAGAGAGTGA+CGG | + | chr6_3:1661212-1661231 | Msa0933170:intron | 45.0% |
| GCTGATGTTCTTGTACTCCA+CGG | - | chr6_3:1661845-1661864 | None:intergenic | 45.0% | |
| GAGCTAGTAGAGGTCATGTA+TGG | + | chr6_3:1661945-1661964 | Msa0933170:intron | 45.0% | |
| GGTGCAACAATCCCACATTA+TGG | - | chr6_3:1662020-1662039 | None:intergenic | 45.0% | |
| TCACATAACACACAGCATGC+AGG | - | chr6_3:1662041-1662060 | None:intergenic | 45.0% | |
| !! | GCGAGTGGATTGTCGTATAT+AGG | + | chr6_3:1662125-1662144 | Msa0933170:intron | 45.0% |
| GGAAGTAATGCCTCCACAAT+GGG | - | chr6_3:1662435-1662454 | None:intergenic | 45.0% | |
| TGGAAGTAATGCCTCCACAA+TGG | - | chr6_3:1662436-1662455 | None:intergenic | 45.0% | |
| CATTACTTCCAGAACACCCA+GGG | + | chr6_3:1662445-1662464 | Msa0933170:CDS | 45.0% | |
| AAATAAGACCCTGGGTGTTC+TGG | - | chr6_3:1662456-1662475 | None:intergenic | 45.0% | |
| !!! | CACCCAGGGTCTTATTTTTG+TGG | + | chr6_3:1662459-1662478 | Msa0933170:CDS | 45.0% |
| TAGCAATGATAGAGACCGAG+TGG | + | chr6_3:1662486-1662505 | Msa0933170:CDS | 45.0% | |
| TGTTGGTATGTGAACCTGGA+TGG | + | chr6_3:1663075-1663094 | Msa0933170:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr6_3:1663368-1663387 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr6_3:1663369-1663388 | None:intergenic | 45.0% |
| ! | AGGCTTGGTTGTTGTTGTTG+TGG | + | chr6_3:1663382-1663401 | Msa0933170:intron | 45.0% |
| ! | CTTGGTTGTTGTTGTTGTGG+AGG | + | chr6_3:1663385-1663404 | Msa0933170:intron | 45.0% |
| ! | ACTTGTGCAACTTCTGGAGA+GGG | + | chr6_3:1663515-1663534 | Msa0933170:CDS | 45.0% |
| ! | TTCTGGAGAGGGTCTTTATG+AGG | + | chr6_3:1663526-1663545 | Msa0933170:CDS | 45.0% |
| TCTGGAGAGGGTCTTTATGA+GGG | + | chr6_3:1663527-1663546 | Msa0933170:CDS | 45.0% | |
| AGAGGGTCTTTATGAGGGTT+TGG | + | chr6_3:1663532-1663551 | Msa0933170:CDS | 45.0% | |
| GTCTTTATGAGGGTTTGGAC+TGG | + | chr6_3:1663537-1663556 | Msa0933170:CDS | 45.0% | |
| TGATCATTTCCTGAGTCTGG+TGG | + | chr6_3:1663929-1663948 | Msa0933170:three_prime_UTR | 45.0% | |
| AGTCTGGTGGTTCTTGAAGA+AGG | + | chr6_3:1663942-1663961 | Msa0933170:three_prime_UTR | 45.0% | |
| ! | GGAACTCCTGCAATCTGTTT+TGG | + | chr6_3:1664085-1664104 | Msa0933170:three_prime_UTR | 45.0% |
| GCGTCTTCATAGAATCAGCA+AGG | + | chr6_3:1664285-1664304 | Msa0933170:three_prime_UTR | 45.0% | |
| CGTTCACGAAGCTGTTCAGT+AGG | + | chr6_3:1659638-1659657 | Msa0933170:CDS | 50.0% | |
| TCATGTCAAGTGTCCGTGTC+AGG | + | chr6_3:1659860-1659879 | Msa0933170:intron | 50.0% | |
| CAGGGGACCCTCTTGAAAAA+TGG | - | chr6_3:1660650-1660669 | None:intergenic | 50.0% | |
| CAGATATGGTTGGACGGTGA+TGG | - | chr6_3:1660885-1660904 | None:intergenic | 50.0% | |
| AAGATACTACCCGGTTCAGC+TGG | - | chr6_3:1661136-1661155 | None:intergenic | 50.0% | |
| AGTGTCAAAGAGAGTGACGG+TGG | + | chr6_3:1661215-1661234 | Msa0933170:intron | 50.0% | |
| AGAACATCAGCTTCACCGTG+TGG | + | chr6_3:1661854-1661873 | Msa0933170:CDS | 50.0% | |
| GAACATCAGCTTCACCGTGT+GGG | + | chr6_3:1661855-1661874 | Msa0933170:CDS | 50.0% | |
| ! | TCTACTAGCTCTCTGTCACC+AGG | - | chr6_3:1661936-1661955 | None:intergenic | 50.0% |
| TGGTGACAGAGAGCTAGTAG+AGG | + | chr6_3:1661935-1661954 | Msa0933170:intron | 50.0% | |
| AGTAATGCCTCCACAATGGG+CGG | - | chr6_3:1662432-1662451 | None:intergenic | 50.0% | |
| GCATTACTTCCAGAACACCC+AGG | + | chr6_3:1662444-1662463 | Msa0933170:CDS | 50.0% | |
| TGATAGAGACCGAGTGGTTG+AGG | + | chr6_3:1662492-1662511 | Msa0933170:CDS | 50.0% | |
| AGGCAAGGGATGAATTGCAC+AGG | + | chr6_3:1662512-1662531 | Msa0933170:CDS | 50.0% | |
| GATCTTCATACCAGTGGCGT+TGG | - | chr6_3:1663222-1663241 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr6_3:1663364-1663383 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr6_3:1663370-1663389 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr6_3:1663367-1663386 | Msa0933170:intron | 50.0% | |
| GTTCACACATGCACGTCTCT+TGG | - | chr6_3:1663447-1663466 | None:intergenic | 50.0% | |
| ! | CAGAGCACTTGTGCAACTTC+TGG | + | chr6_3:1663509-1663528 | Msa0933170:CDS | 50.0% |
| ! | CACTTGTGCAACTTCTGGAG+AGG | + | chr6_3:1663514-1663533 | Msa0933170:CDS | 50.0% |
| CTTCAAGAACCACCAGACTC+AGG | - | chr6_3:1663941-1663960 | None:intergenic | 50.0% | |
| GGCACACCAAAACAGATTGC+AGG | - | chr6_3:1664094-1664113 | None:intergenic | 50.0% | |
| TGTCAAGTGTCCGTGTCAGG+TGG | + | chr6_3:1659863-1659882 | Msa0933170:intron | 55.0% | |
| CAAGAGGGTCCCCTGCATAA+TGG | + | chr6_3:1660655-1660674 | Msa0933170:intron | 55.0% | |
| ! | TTGCGTTGGGGTGTCATGAC+AGG | + | chr6_3:1661328-1661347 | Msa0933170:intron | 55.0% |
| AGCTTCACCGTGTGGGATGT+CGG | + | chr6_3:1661862-1661881 | Msa0933170:CDS | 55.0% | |
| AAAAGGGGGAGAGTAGCGAG+TGG | + | chr6_3:1662110-1662129 | Msa0933170:intron | 55.0% | |
| ATCTGCAGATCCGCCCATTG+TGG | + | chr6_3:1662419-1662438 | Msa0933170:intron | 55.0% | |
| AGACCGAGTGGTTGAGGCAA+GGG | + | chr6_3:1662498-1662517 | Msa0933170:CDS | 55.0% | |
| CATCCCTTGCCTCAACCACT+CGG | - | chr6_3:1662504-1662523 | None:intergenic | 55.0% | |
| ! | CTTCATACCAGTGGCGTTGG+CGG | - | chr6_3:1663219-1663238 | None:intergenic | 55.0% |
| ! | TTTGTGCCGACCCCACTTAG+TGG | + | chr6_3:1663355-1663374 | Msa0933170:intron | 55.0% |
| ! | TTGTGCCGACCCCACTTAGT+GGG | + | chr6_3:1663356-1663375 | Msa0933170:intron | 55.0% |
| CGACCCCACTTAGTGGGATA+AGG | + | chr6_3:1663362-1663381 | Msa0933170:intron | 55.0% | |
| ATGGTAGGTCTCGATGCGGC+TGG | + | chr6_3:1659691-1659710 | Msa0933170:CDS | 60.0% | |
| GCTTCACCGTGTGGGATGTC+GGG | + | chr6_3:1661863-1661882 | Msa0933170:CDS | 60.0% | |
| CTTCACCGTGTGGGATGTCG+GGG | + | chr6_3:1661864-1661883 | Msa0933170:CDS | 60.0% | |
| TTCACCGTGTGGGATGTCGG+GGG | + | chr6_3:1661865-1661884 | Msa0933170:CDS | 60.0% | |
| TGCAGATCCGCCCATTGTGG+AGG | + | chr6_3:1662422-1662441 | Msa0933170:intron | 60.0% | |
| GAGACCGAGTGGTTGAGGCA+AGG | + | chr6_3:1662497-1662516 | Msa0933170:CDS | 60.0% | |
| ATTCTCTCCGCCAACGCCAC+TGG | + | chr6_3:1663209-1663228 | Msa0933170:CDS | 60.0% | |
| CTGACCCCCGACATCCCACA+CGG | - | chr6_3:1661872-1661891 | None:intergenic | 65.0% | |
| GGATGTCGGGGGTCAGGACA+AGG | + | chr6_3:1661876-1661895 | Msa0933170:CDS | 65.0% | |
| CGTGTGGGATGTCGGGGGTC+AGG | + | chr6_3:1661870-1661889 | Msa0933170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 1659126 | 1664321 | 1659126 | ID=Msa0933170;Name=Msa0933170 |
| chr6_3 | mRNA | 1659126 | 1664321 | 1659126 | ID=Msa0933170-mRNA-1;Parent=Msa0933170;Name=Msa0933170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=176|1|1|1|0.66|0.57|7|423|181 |
| chr6_3 | exon | 1659126 | 1659283 | 1659126 | ID=Msa0933170-mRNA-1:exon:609;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1659610 | 1659775 | 1659610 | ID=Msa0933170-mRNA-1:exon:610;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1661827 | 1661897 | 1661827 | ID=Msa0933170-mRNA-1:exon:611;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1662427 | 1662546 | 1662427 | ID=Msa0933170-mRNA-1:exon:612;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1663112 | 1663230 | 1663112 | ID=Msa0933170-mRNA-1:exon:613;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1663502 | 1663583 | 1663502 | ID=Msa0933170-mRNA-1:exon:614;Parent=Msa0933170-mRNA-1 |
| chr6_3 | exon | 1663893 | 1664321 | 1663893 | ID=Msa0933170-mRNA-1:exon:615;Parent=Msa0933170-mRNA-1 |
| chr6_3 | five_prime_UTR | 1659126 | 1659283 | 1659126 | ID=Msa0933170-mRNA-1:five_prime_utr;Parent=Msa0933170-mRNA-1 |
| chr6_3 | five_prime_UTR | 1659610 | 1659627 | 1659610 | ID=Msa0933170-mRNA-1:five_prime_utr;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1659628 | 1659775 | 1659628 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1661827 | 1661897 | 1661827 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1662427 | 1662546 | 1662427 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1663112 | 1663230 | 1663112 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1663502 | 1663583 | 1663502 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | CDS | 1663893 | 1663898 | 1663893 | ID=Msa0933170-mRNA-1:cds;Parent=Msa0933170-mRNA-1 |
| chr6_3 | three_prime_UTR | 1663899 | 1664321 | 1663899 | ID=Msa0933170-mRNA-1:three_prime_utr;Parent=Msa0933170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
