Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869360 | XP_003594552.1 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 1.14e-85 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869360 | sp|Q9SD20|MS5L2_ARATH | 64.179 | 134 | 48 | 0 | 35 | 168 | 48 | 181 | 3.01e-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0869360 | Msa0934210 | 0.875698 | 2.510457e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869360 | MtrunA17_Chr2g0292681 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 1.05e-89 | 273 |
| Msa0869360 | MtrunA17_Chr7g0237581 | 65.152 | 132 | 46 | 0 | 37 | 168 | 44 | 175 | 2.23e-58 | 184 |
| Msa0869360 | MtrunA17_Chr7g0237621 | 64.394 | 132 | 47 | 0 | 37 | 168 | 56 | 187 | 2.77e-57 | 181 |
| Msa0869360 | MtrunA17_Chr8g0371521 | 64.925 | 134 | 47 | 0 | 35 | 168 | 54 | 187 | 3.22e-57 | 186 |
| Msa0869360 | MtrunA17_Chr2g0292671 | 92.771 | 83 | 6 | 0 | 86 | 168 | 2 | 84 | 5.66e-53 | 167 |
| Msa0869360 | MtrunA17_Chr3g0077351 | 100.000 | 37 | 0 | 0 | 1 | 37 | 46 | 82 | 6.23e-18 | 79.3 |
| Msa0869360 | MtrunA17_Chr2g0292661 | 88.889 | 36 | 4 | 0 | 37 | 72 | 68 | 103 | 2.73e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869360 | AT3G51280.1 | 64.179 | 134 | 48 | 0 | 35 | 168 | 48 | 181 | 3.06e-56 | 182 |
| Msa0869360 | AT4G20900.2 | 62.879 | 132 | 49 | 0 | 37 | 168 | 71 | 202 | 5.83e-56 | 182 |
| Msa0869360 | AT4G20900.1 | 62.879 | 132 | 49 | 0 | 37 | 168 | 71 | 202 | 8.59e-56 | 182 |
| Msa0869360 | AT5G48850.1 | 60.606 | 132 | 52 | 0 | 37 | 168 | 47 | 178 | 2.44e-55 | 177 |
| Msa0869360 | AT1G04770.1 | 59.848 | 132 | 53 | 0 | 37 | 168 | 40 | 171 | 4.56e-52 | 168 |
| Msa0869360 | AT5G44330.1 | 59.848 | 132 | 53 | 0 | 37 | 168 | 64 | 195 | 1.48e-49 | 166 |
| Msa0869360 | AT5G22794.2 | 40.278 | 72 | 43 | 0 | 89 | 160 | 66 | 137 | 6.67e-12 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 6_1:+3535717 | None:intergenic |
| CATCTTGGTTGAACTCTATA+CGG | 0.371370 | 6_1:-3535086 | Msa0869360:intron |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.372126 | 6_1:-3535209 | Msa0869360:CDS |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 6_1:-3535241 | Msa0869360:CDS |
| GACGCGATCACCAGCATTGA+TGG | 0.392146 | 6_1:+3535231 | None:intergenic |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 6_1:-3535768 | Msa0869360:CDS |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 6_1:+3535245 | None:intergenic |
| TCGCGTCGAGAGTGCCTTGA+AGG | 0.421679 | 6_1:-3535215 | Msa0869360:CDS |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 6_1:+3535201 | None:intergenic |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 6_1:-3535280 | Msa0869360:CDS |
| TCTCTGCCCTTCTGATTCTC+AGG | 0.443464 | 6_1:-3535122 | Msa0869360:CDS |
| GGATACTCGGGAACTTGGCT+TGG | 0.447870 | 6_1:-3534488 | Msa0869360:CDS |
| GGAATCTCTTGACAACATCT+TGG | 0.450411 | 6_1:-3535101 | Msa0869360:CDS |
| CAAGAGATATCAAGGATACT+CGG | 0.452807 | 6_1:-3534501 | Msa0869360:CDS |
| TTGTTACTGTTATAGAGGTC+AGG | 0.460441 | 6_1:-3534651 | Msa0869360:intron |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 6_1:-3535712 | Msa0869360:intron |
| TAGTTATGAAGCAACTGAAC+CGG | 0.474084 | 6_1:-3535183 | Msa0869360:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 6_1:+3535262 | None:intergenic |
| GATACTCGGGAACTTGGCTT+GGG | 0.475595 | 6_1:-3534487 | Msa0869360:CDS |
| ATCAAGGATACTCGGGAACT+TGG | 0.479935 | 6_1:-3534493 | Msa0869360:CDS |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 6_1:+3535705 | None:intergenic |
| GGAAGGGTTGATGAAGAGAT+TGG | 0.505590 | 6_1:-3534630 | Msa0869360:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 6_1:+3535246 | None:intergenic |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 6_1:-3534579 | Msa0869360:CDS |
| GTGTTGAACAAGAGATATCA+AGG | 0.526210 | 6_1:-3534509 | Msa0869360:CDS |
| GAGAATCAGAAGGGCAGAGA+TGG | 0.542776 | 6_1:+3535125 | None:intergenic |
| ACAAAACATGCAAGATCTCA+AGG | 0.546544 | 6_1:-3534549 | Msa0869360:CDS |
| ATTCGATTGCTTCATCCGAC+CGG | 0.551071 | 6_1:+3535164 | None:intergenic |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 6_1:-3535789 | Msa0869360:CDS |
| TACTGTTATAGAGGTCAGGA+AGG | 0.560755 | 6_1:-3534647 | Msa0869360:intron |
| AAGAGATATCAAGGATACTC+GGG | 0.578149 | 6_1:-3534500 | Msa0869360:CDS |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 6_1:-3534594 | Msa0869360:CDS |
| AGAGATTCCTGAGAATCAGA+AGG | 0.602703 | 6_1:+3535115 | None:intergenic |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 6_1:-3534575 | Msa0869360:CDS |
| GAGATTCCTGAGAATCAGAA+GGG | 0.645235 | 6_1:+3535116 | None:intergenic |
| CAAAACATGCAAGATCTCAA+GGG | 0.648943 | 6_1:-3534548 | Msa0869360:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 6_1:-3535797 | Msa0869360:CDS |
| ACTGTTATAGAGGTCAGGAA+GGG | 0.657103 | 6_1:-3534646 | Msa0869360:intron |
| TATGAAGCAACTGAACCGGT+CGG | 0.679096 | 6_1:-3535179 | Msa0869360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr6_1:3534601-3534620 | Msa0869360:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr6_1:3534602-3534621 | Msa0869360:CDS | 10.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr6_1:3534601-3534620 | Msa0869360:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr6_1:3534602-3534621 | Msa0869360:CDS | 10.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr6_1:3534926-3534945 | Msa0869360:intron | 20.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr6_1:3534926-3534945 | Msa0869360:intron | 20.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr6_1:3534820-3534839 | Msa0869360:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr6_1:3534821-3534840 | Msa0869360:intron | 25.0% |
| ! | AATTCATTAGATGTAAGAGA+AGG | - | chr6_1:3534883-3534902 | Msa0869360:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr6_1:3534942-3534961 | Msa0869360:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr6_1:3535322-3535341 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr6_1:3535345-3535364 | Msa0869360:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr6_1:3535392-3535411 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr6_1:3535390-3535409 | Msa0869360:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr6_1:3535406-3535425 | Msa0869360:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr6_1:3535561-3535580 | Msa0869360:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr6_1:3535624-3535643 | Msa0869360:intron | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr6_1:3534820-3534839 | Msa0869360:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr6_1:3534821-3534840 | Msa0869360:intron | 25.0% |
| ! | AATTCATTAGATGTAAGAGA+AGG | - | chr6_1:3534883-3534902 | Msa0869360:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr6_1:3534942-3534961 | Msa0869360:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr6_1:3535322-3535341 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr6_1:3535345-3535364 | Msa0869360:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr6_1:3535392-3535411 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr6_1:3535390-3535409 | Msa0869360:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr6_1:3535406-3535425 | Msa0869360:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr6_1:3535561-3535580 | Msa0869360:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr6_1:3535624-3535643 | Msa0869360:intron | 25.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_1:3534670-3534689 | Msa0869360:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_1:3534671-3534690 | Msa0869360:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_1:3534670-3534689 | Msa0869360:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_1:3534671-3534690 | Msa0869360:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr6_1:3534987-3535006 | Msa0869360:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr6_1:3535023-3535042 | Msa0869360:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr6_1:3535202-3535221 | Msa0869360:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr6_1:3535248-3535267 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr6_1:3535348-3535367 | Msa0869360:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr6_1:3535349-3535368 | Msa0869360:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr6_1:3535504-3535523 | Msa0869360:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr6_1:3535574-3535593 | Msa0869360:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr6_1:3535686-3535705 | Msa0869360:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_1:3534670-3534689 | Msa0869360:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_1:3534671-3534690 | Msa0869360:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_1:3534670-3534689 | Msa0869360:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_1:3534671-3534690 | Msa0869360:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr6_1:3534987-3535006 | Msa0869360:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr6_1:3535023-3535042 | Msa0869360:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr6_1:3535202-3535221 | Msa0869360:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr6_1:3535248-3535267 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr6_1:3535348-3535367 | Msa0869360:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr6_1:3535349-3535368 | Msa0869360:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr6_1:3535504-3535523 | Msa0869360:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr6_1:3535574-3535593 | Msa0869360:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr6_1:3535686-3535705 | Msa0869360:intron | 30.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr6_1:3534512-3534531 | Msa0869360:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr6_1:3534618-3534637 | Msa0869360:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr6_1:3535021-3535040 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr6_1:3535022-3535041 | Msa0869360:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr6_1:3535082-3535101 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr6_1:3535097-3535116 | Msa0869360:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr6_1:3535194-3535213 | Msa0869360:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr6_1:3535201-3535220 | Msa0869360:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr6_1:3535272-3535291 | Msa0869360:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr6_1:3535356-3535375 | Msa0869360:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr6_1:3535521-3535540 | Msa0869360:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr6_1:3535595-3535614 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr6_1:3535592-3535611 | Msa0869360:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr6_1:3535629-3535648 | Msa0869360:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr6_1:3535701-3535720 | Msa0869360:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr6_1:3535705-3535724 | Msa0869360:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr6_1:3535731-3535750 | Msa0869360:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr6_1:3535732-3535751 | Msa0869360:CDS | 35.0% | |
| GTGTTGAACAAGAGATATCA+AGG | - | chr6_1:3535771-3535790 | Msa0869360:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr6_1:3535779-3535798 | Msa0869360:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr6_1:3535780-3535799 | Msa0869360:CDS | 35.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr6_1:3534512-3534531 | Msa0869360:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr6_1:3534618-3534637 | Msa0869360:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr6_1:3535021-3535040 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr6_1:3535022-3535041 | Msa0869360:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr6_1:3535082-3535101 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr6_1:3535097-3535116 | Msa0869360:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr6_1:3535194-3535213 | Msa0869360:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr6_1:3535201-3535220 | Msa0869360:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr6_1:3535272-3535291 | Msa0869360:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr6_1:3535356-3535375 | Msa0869360:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr6_1:3535521-3535540 | Msa0869360:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr6_1:3535595-3535614 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr6_1:3535592-3535611 | Msa0869360:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr6_1:3535629-3535648 | Msa0869360:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr6_1:3535701-3535720 | Msa0869360:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr6_1:3535705-3535724 | Msa0869360:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr6_1:3535731-3535750 | Msa0869360:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr6_1:3535732-3535751 | Msa0869360:CDS | 35.0% | |
| GTGTTGAACAAGAGATATCA+AGG | - | chr6_1:3535771-3535790 | Msa0869360:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr6_1:3535779-3535798 | Msa0869360:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr6_1:3535780-3535799 | Msa0869360:CDS | 35.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr6_1:3534483-3534502 | Msa0869360:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr6_1:3534566-3534585 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr6_1:3534568-3534587 | Msa0869360:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr6_1:3535000-3535019 | Msa0869360:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr6_1:3535167-3535186 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr6_1:3535168-3535187 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr6_1:3535179-3535198 | Msa0869360:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr6_1:3535633-3535652 | Msa0869360:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr6_1:3535634-3535653 | Msa0869360:intron | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr6_1:3534483-3534502 | Msa0869360:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr6_1:3534566-3534585 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr6_1:3534568-3534587 | Msa0869360:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr6_1:3535000-3535019 | Msa0869360:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr6_1:3535167-3535186 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr6_1:3535168-3535187 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr6_1:3535179-3535198 | Msa0869360:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr6_1:3535633-3535652 | Msa0869360:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr6_1:3535634-3535653 | Msa0869360:intron | 40.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr6_1:3534491-3534510 | Msa0869360:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr6_1:3534578-3534597 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_1:3534679-3534698 | Msa0869360:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_1:3534686-3534705 | Msa0869360:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_1:3534679-3534698 | Msa0869360:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_1:3534686-3534705 | Msa0869360:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr6_1:3535037-3535056 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr6_1:3535101-3535120 | Msa0869360:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr6_1:3535119-3535138 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr6_1:3535650-3535669 | Msa0869360:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr6_1:3535787-3535806 | Msa0869360:CDS | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr6_1:3534491-3534510 | Msa0869360:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr6_1:3534578-3534597 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_1:3534679-3534698 | Msa0869360:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_1:3534686-3534705 | Msa0869360:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_1:3534679-3534698 | Msa0869360:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_1:3534686-3534705 | Msa0869360:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr6_1:3535037-3535056 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr6_1:3535101-3535120 | Msa0869360:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr6_1:3535119-3535138 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr6_1:3535650-3535669 | Msa0869360:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr6_1:3535787-3535806 | Msa0869360:CDS | 45.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr6_1:3535038-3535057 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr6_1:3535071-3535090 | Msa0869360:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr6_1:3535158-3535177 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr6_1:3535158-3535177 | Msa0869360:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr6_1:3535793-3535812 | Msa0869360:CDS | 50.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr6_1:3535038-3535057 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr6_1:3535071-3535090 | Msa0869360:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr6_1:3535158-3535177 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr6_1:3535158-3535177 | Msa0869360:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr6_1:3535793-3535812 | Msa0869360:CDS | 50.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr6_1:3535039-3535058 | Msa0869360:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr6_1:3535052-3535071 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr6_1:3535792-3535811 | Msa0869360:CDS | 55.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr6_1:3535039-3535058 | Msa0869360:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr6_1:3535052-3535071 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr6_1:3535792-3535811 | Msa0869360:CDS | 55.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr6_1:3535065-3535084 | Msa0869360:intron | 60.0% |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr6_1:3535065-3535084 | Msa0869360:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 3534479 | 3535823 | 3534479 | ID=Msa0869360;Name=Msa0869360 |
| chr6_1 | mRNA | 3534479 | 3535823 | 3534479 | ID=Msa0869360-mRNA-1;Parent=Msa0869360;Name=Msa0869360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.5|0.33|0.66|1|0.66|3|0|168 |
| chr6_1 | exon | 3534479 | 3534658 | 3534479 | ID=Msa0869360-mRNA-1:exon:1089;Parent=Msa0869360-mRNA-1 |
| chr6_1 | exon | 3535087 | 3535299 | 3535087 | ID=Msa0869360-mRNA-1:exon:1088;Parent=Msa0869360-mRNA-1 |
| chr6_1 | exon | 3535713 | 3535823 | 3535713 | ID=Msa0869360-mRNA-1:exon:1087;Parent=Msa0869360-mRNA-1 |
| chr6_1 | CDS | 3535713 | 3535823 | 3535713 | ID=Msa0869360-mRNA-1:cds;Parent=Msa0869360-mRNA-1 |
| chr6_1 | CDS | 3535087 | 3535299 | 3535087 | ID=Msa0869360-mRNA-1:cds;Parent=Msa0869360-mRNA-1 |
| chr6_1 | CDS | 3534479 | 3534658 | 3534479 | ID=Msa0869360-mRNA-1:cds;Parent=Msa0869360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
