Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934210 | XP_003594552.1 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 1.14e-85 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934210 | sp|Q9SD20|MS5L2_ARATH | 64.179 | 134 | 48 | 0 | 35 | 168 | 48 | 181 | 3.01e-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0934210 | 0.801453 | 8.939138e-49 | -8.615850e-47 |
| Msa0220740 | Msa0934210 | 0.803026 | 4.241943e-49 | -8.615850e-47 |
| Msa0402290 | Msa0934210 | 0.804873 | 1.752659e-49 | -8.615850e-47 |
| Msa0869360 | Msa0934210 | 0.875698 | 2.510457e-68 | -8.615850e-47 |
| Msa0934210 | Msa0969520 | 0.803205 | 3.896114e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934210 | MtrunA17_Chr2g0292681 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 1.05e-89 | 273 |
| Msa0934210 | MtrunA17_Chr7g0237581 | 65.152 | 132 | 46 | 0 | 37 | 168 | 44 | 175 | 2.23e-58 | 184 |
| Msa0934210 | MtrunA17_Chr7g0237621 | 64.394 | 132 | 47 | 0 | 37 | 168 | 56 | 187 | 2.77e-57 | 181 |
| Msa0934210 | MtrunA17_Chr8g0371521 | 64.925 | 134 | 47 | 0 | 35 | 168 | 54 | 187 | 3.22e-57 | 186 |
| Msa0934210 | MtrunA17_Chr2g0292671 | 92.771 | 83 | 6 | 0 | 86 | 168 | 2 | 84 | 5.66e-53 | 167 |
| Msa0934210 | MtrunA17_Chr3g0077351 | 100.000 | 37 | 0 | 0 | 1 | 37 | 46 | 82 | 6.23e-18 | 79.3 |
| Msa0934210 | MtrunA17_Chr2g0292661 | 88.889 | 36 | 4 | 0 | 37 | 72 | 68 | 103 | 2.73e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934210 | AT3G51280.1 | 64.179 | 134 | 48 | 0 | 35 | 168 | 48 | 181 | 3.06e-56 | 182 |
| Msa0934210 | AT4G20900.2 | 62.879 | 132 | 49 | 0 | 37 | 168 | 71 | 202 | 5.83e-56 | 182 |
| Msa0934210 | AT4G20900.1 | 62.879 | 132 | 49 | 0 | 37 | 168 | 71 | 202 | 8.59e-56 | 182 |
| Msa0934210 | AT5G48850.1 | 60.606 | 132 | 52 | 0 | 37 | 168 | 47 | 178 | 2.44e-55 | 177 |
| Msa0934210 | AT1G04770.1 | 59.848 | 132 | 53 | 0 | 37 | 168 | 40 | 171 | 4.56e-52 | 168 |
| Msa0934210 | AT5G44330.1 | 59.848 | 132 | 53 | 0 | 37 | 168 | 64 | 195 | 1.48e-49 | 166 |
| Msa0934210 | AT5G22794.2 | 40.278 | 72 | 43 | 0 | 89 | 160 | 66 | 137 | 6.67e-12 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 6_3:+3917486 | None:intergenic |
| CATCTTGGTTGAACTCTATA+CGG | 0.371370 | 6_3:-3916855 | Msa0934210:intron |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.372126 | 6_3:-3916978 | Msa0934210:CDS |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 6_3:-3917010 | Msa0934210:CDS |
| GACGCGATCACCAGCATTGA+TGG | 0.392146 | 6_3:+3917000 | None:intergenic |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 6_3:-3917537 | Msa0934210:CDS |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 6_3:+3917014 | None:intergenic |
| TCGCGTCGAGAGTGCCTTGA+AGG | 0.421679 | 6_3:-3916984 | Msa0934210:CDS |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 6_3:+3916970 | None:intergenic |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 6_3:-3917049 | Msa0934210:CDS |
| TCTCTGCCCTTCTGATTCTC+AGG | 0.443464 | 6_3:-3916891 | Msa0934210:CDS |
| GGATACTCGGGAACTTGGCT+TGG | 0.447870 | 6_3:-3916257 | Msa0934210:CDS |
| GGAATCTCTTGACAACATCT+TGG | 0.450411 | 6_3:-3916870 | Msa0934210:CDS |
| CAAGAGATATCAAGGATACT+CGG | 0.452807 | 6_3:-3916270 | Msa0934210:CDS |
| TTGTTACTGTTATAGAGGTC+AGG | 0.460441 | 6_3:-3916420 | Msa0934210:intron |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 6_3:-3917481 | Msa0934210:intron |
| TAGTTATGAAGCAACTGAAC+CGG | 0.474084 | 6_3:-3916952 | Msa0934210:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 6_3:+3917031 | None:intergenic |
| GATACTCGGGAACTTGGCTT+GGG | 0.475595 | 6_3:-3916256 | Msa0934210:CDS |
| ATCAAGGATACTCGGGAACT+TGG | 0.479935 | 6_3:-3916262 | Msa0934210:CDS |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 6_3:+3917474 | None:intergenic |
| GGAAGGGTTGATGAAGAGAT+TGG | 0.505590 | 6_3:-3916399 | Msa0934210:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 6_3:+3917015 | None:intergenic |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 6_3:-3916348 | Msa0934210:CDS |
| GTGTTGAACAAGAGATATCA+AGG | 0.526210 | 6_3:-3916278 | Msa0934210:CDS |
| GAGAATCAGAAGGGCAGAGA+TGG | 0.542776 | 6_3:+3916894 | None:intergenic |
| ACAAAACATGCAAGATCTCA+AGG | 0.546544 | 6_3:-3916318 | Msa0934210:CDS |
| ATTCGATTGCTTCATCCGAC+CGG | 0.551071 | 6_3:+3916933 | None:intergenic |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 6_3:-3917558 | Msa0934210:CDS |
| TACTGTTATAGAGGTCAGGA+AGG | 0.560755 | 6_3:-3916416 | Msa0934210:intron |
| AAGAGATATCAAGGATACTC+GGG | 0.578149 | 6_3:-3916269 | Msa0934210:CDS |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 6_3:-3916363 | Msa0934210:CDS |
| AGAGATTCCTGAGAATCAGA+AGG | 0.602703 | 6_3:+3916884 | None:intergenic |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 6_3:-3916344 | Msa0934210:CDS |
| GAGATTCCTGAGAATCAGAA+GGG | 0.645235 | 6_3:+3916885 | None:intergenic |
| CAAAACATGCAAGATCTCAA+GGG | 0.648943 | 6_3:-3916317 | Msa0934210:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 6_3:-3917566 | Msa0934210:CDS |
| ACTGTTATAGAGGTCAGGAA+GGG | 0.657103 | 6_3:-3916415 | Msa0934210:intron |
| TATGAAGCAACTGAACCGGT+CGG | 0.679096 | 6_3:-3916948 | Msa0934210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr6_3:3916370-3916389 | Msa0934210:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr6_3:3916371-3916390 | Msa0934210:CDS | 10.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr6_3:3916370-3916389 | Msa0934210:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr6_3:3916371-3916390 | Msa0934210:CDS | 10.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr6_3:3916695-3916714 | Msa0934210:intron | 20.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr6_3:3916695-3916714 | Msa0934210:intron | 20.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr6_3:3916589-3916608 | Msa0934210:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr6_3:3916590-3916609 | Msa0934210:intron | 25.0% |
| ! | AATTCATTAGATGTAAGAGA+AGG | - | chr6_3:3916652-3916671 | Msa0934210:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr6_3:3916711-3916730 | Msa0934210:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr6_3:3917091-3917110 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr6_3:3917114-3917133 | Msa0934210:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr6_3:3917161-3917180 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr6_3:3917159-3917178 | Msa0934210:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr6_3:3917175-3917194 | Msa0934210:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr6_3:3917330-3917349 | Msa0934210:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr6_3:3917393-3917412 | Msa0934210:intron | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr6_3:3916589-3916608 | Msa0934210:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr6_3:3916590-3916609 | Msa0934210:intron | 25.0% |
| ! | AATTCATTAGATGTAAGAGA+AGG | - | chr6_3:3916652-3916671 | Msa0934210:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr6_3:3916711-3916730 | Msa0934210:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr6_3:3917091-3917110 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr6_3:3917114-3917133 | Msa0934210:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr6_3:3917161-3917180 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr6_3:3917159-3917178 | Msa0934210:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr6_3:3917175-3917194 | Msa0934210:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr6_3:3917330-3917349 | Msa0934210:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr6_3:3917393-3917412 | Msa0934210:intron | 25.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_3:3916439-3916458 | Msa0934210:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_3:3916440-3916459 | Msa0934210:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_3:3916439-3916458 | Msa0934210:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_3:3916440-3916459 | Msa0934210:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr6_3:3916756-3916775 | Msa0934210:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr6_3:3916792-3916811 | Msa0934210:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr6_3:3916971-3916990 | Msa0934210:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr6_3:3917017-3917036 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr6_3:3917117-3917136 | Msa0934210:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr6_3:3917118-3917137 | Msa0934210:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr6_3:3917273-3917292 | Msa0934210:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr6_3:3917343-3917362 | Msa0934210:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr6_3:3917455-3917474 | Msa0934210:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_3:3916439-3916458 | Msa0934210:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_3:3916440-3916459 | Msa0934210:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr6_3:3916439-3916458 | Msa0934210:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr6_3:3916440-3916459 | Msa0934210:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr6_3:3916756-3916775 | Msa0934210:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr6_3:3916792-3916811 | Msa0934210:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr6_3:3916971-3916990 | Msa0934210:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr6_3:3917017-3917036 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr6_3:3917117-3917136 | Msa0934210:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr6_3:3917118-3917137 | Msa0934210:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr6_3:3917273-3917292 | Msa0934210:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr6_3:3917343-3917362 | Msa0934210:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr6_3:3917455-3917474 | Msa0934210:intron | 30.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr6_3:3916281-3916300 | Msa0934210:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr6_3:3916387-3916406 | Msa0934210:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr6_3:3916790-3916809 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr6_3:3916791-3916810 | Msa0934210:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr6_3:3916851-3916870 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr6_3:3916866-3916885 | Msa0934210:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr6_3:3916963-3916982 | Msa0934210:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr6_3:3916970-3916989 | Msa0934210:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr6_3:3917041-3917060 | Msa0934210:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr6_3:3917125-3917144 | Msa0934210:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr6_3:3917290-3917309 | Msa0934210:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr6_3:3917364-3917383 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr6_3:3917361-3917380 | Msa0934210:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr6_3:3917398-3917417 | Msa0934210:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr6_3:3917470-3917489 | Msa0934210:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr6_3:3917474-3917493 | Msa0934210:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr6_3:3917500-3917519 | Msa0934210:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr6_3:3917501-3917520 | Msa0934210:CDS | 35.0% | |
| GTGTTGAACAAGAGATATCA+AGG | - | chr6_3:3917540-3917559 | Msa0934210:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr6_3:3917548-3917567 | Msa0934210:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr6_3:3917549-3917568 | Msa0934210:CDS | 35.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr6_3:3916281-3916300 | Msa0934210:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr6_3:3916387-3916406 | Msa0934210:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr6_3:3916790-3916809 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr6_3:3916791-3916810 | Msa0934210:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr6_3:3916851-3916870 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr6_3:3916866-3916885 | Msa0934210:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr6_3:3916963-3916982 | Msa0934210:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr6_3:3916970-3916989 | Msa0934210:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr6_3:3917041-3917060 | Msa0934210:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr6_3:3917125-3917144 | Msa0934210:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr6_3:3917290-3917309 | Msa0934210:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr6_3:3917364-3917383 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr6_3:3917361-3917380 | Msa0934210:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr6_3:3917398-3917417 | Msa0934210:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr6_3:3917470-3917489 | Msa0934210:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr6_3:3917474-3917493 | Msa0934210:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr6_3:3917500-3917519 | Msa0934210:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr6_3:3917501-3917520 | Msa0934210:CDS | 35.0% | |
| GTGTTGAACAAGAGATATCA+AGG | - | chr6_3:3917540-3917559 | Msa0934210:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr6_3:3917548-3917567 | Msa0934210:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr6_3:3917549-3917568 | Msa0934210:CDS | 35.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr6_3:3916252-3916271 | Msa0934210:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr6_3:3916335-3916354 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr6_3:3916337-3916356 | Msa0934210:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr6_3:3916769-3916788 | Msa0934210:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr6_3:3916936-3916955 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr6_3:3916937-3916956 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr6_3:3916948-3916967 | Msa0934210:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr6_3:3917402-3917421 | Msa0934210:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr6_3:3917403-3917422 | Msa0934210:intron | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr6_3:3916252-3916271 | Msa0934210:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr6_3:3916335-3916354 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr6_3:3916337-3916356 | Msa0934210:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr6_3:3916769-3916788 | Msa0934210:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr6_3:3916936-3916955 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr6_3:3916937-3916956 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr6_3:3916948-3916967 | Msa0934210:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr6_3:3917402-3917421 | Msa0934210:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr6_3:3917403-3917422 | Msa0934210:intron | 40.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr6_3:3916260-3916279 | Msa0934210:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr6_3:3916347-3916366 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_3:3916448-3916467 | Msa0934210:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_3:3916455-3916474 | Msa0934210:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_3:3916448-3916467 | Msa0934210:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_3:3916455-3916474 | Msa0934210:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr6_3:3916806-3916825 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr6_3:3916870-3916889 | Msa0934210:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr6_3:3916888-3916907 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr6_3:3917419-3917438 | Msa0934210:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr6_3:3917556-3917575 | Msa0934210:CDS | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr6_3:3916260-3916279 | Msa0934210:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr6_3:3916347-3916366 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_3:3916448-3916467 | Msa0934210:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_3:3916455-3916474 | Msa0934210:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr6_3:3916448-3916467 | Msa0934210:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr6_3:3916455-3916474 | Msa0934210:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr6_3:3916806-3916825 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr6_3:3916870-3916889 | Msa0934210:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr6_3:3916888-3916907 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr6_3:3917419-3917438 | Msa0934210:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr6_3:3917556-3917575 | Msa0934210:CDS | 45.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr6_3:3916807-3916826 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr6_3:3916840-3916859 | Msa0934210:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr6_3:3916927-3916946 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr6_3:3916927-3916946 | Msa0934210:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr6_3:3917562-3917581 | Msa0934210:CDS | 50.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr6_3:3916807-3916826 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr6_3:3916840-3916859 | Msa0934210:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr6_3:3916927-3916946 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr6_3:3916927-3916946 | Msa0934210:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr6_3:3917562-3917581 | Msa0934210:CDS | 50.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr6_3:3916808-3916827 | Msa0934210:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr6_3:3916821-3916840 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr6_3:3917561-3917580 | Msa0934210:CDS | 55.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr6_3:3916808-3916827 | Msa0934210:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr6_3:3916821-3916840 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr6_3:3917561-3917580 | Msa0934210:CDS | 55.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr6_3:3916834-3916853 | Msa0934210:intron | 60.0% |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr6_3:3916834-3916853 | Msa0934210:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 3916248 | 3917592 | 3916248 | ID=Msa0934210;Name=Msa0934210 |
| chr6_3 | mRNA | 3916248 | 3917592 | 3916248 | ID=Msa0934210-mRNA-1;Parent=Msa0934210;Name=Msa0934210-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.5|0.33|0.66|1|0.66|3|0|168 |
| chr6_3 | exon | 3916248 | 3916427 | 3916248 | ID=Msa0934210-mRNA-1:exon:1209;Parent=Msa0934210-mRNA-1 |
| chr6_3 | exon | 3916856 | 3917068 | 3916856 | ID=Msa0934210-mRNA-1:exon:1208;Parent=Msa0934210-mRNA-1 |
| chr6_3 | exon | 3917482 | 3917592 | 3917482 | ID=Msa0934210-mRNA-1:exon:1207;Parent=Msa0934210-mRNA-1 |
| chr6_3 | CDS | 3917482 | 3917592 | 3917482 | ID=Msa0934210-mRNA-1:cds;Parent=Msa0934210-mRNA-1 |
| chr6_3 | CDS | 3916856 | 3917068 | 3916856 | ID=Msa0934210-mRNA-1:cds;Parent=Msa0934210-mRNA-1 |
| chr6_3 | CDS | 3916248 | 3916427 | 3916248 | ID=Msa0934210-mRNA-1:cds;Parent=Msa0934210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
