AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869960 MtrunA17_Chr7g0255821 32.573 614 336 26 23 580 201 792 1.14e-63 224
Msa0869960 MtrunA17_Chr1g0168031 25.296 676 363 29 26 580 473 1127 6.93e-23 103
Msa0869960 MtrunA17_Chr4g0024921 28.831 385 222 18 245 605 577 933 2.08e-20 95.9
Msa0869960 MtrunA17_Chr2g0320751 22.764 492 302 19 145 580 521 990 1.30e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869960 AT5G05130.1 29.305 662 353 26 8 580 216 851 4.67e-56 204
Msa0869960 AT5G43530.1 24.739 671 387 27 11 580 598 1251 2.10e-21 99.8
Msa0869960 AT1G05120.1 32.231 242 128 12 359 580 579 804 2.86e-19 92.8
Msa0869960 AT1G05120.2 32.231 242 128 12 359 580 622 847 3.12e-19 92.8
Msa0869960 AT3G20010.1 25.965 285 143 12 352 580 744 1016 3.48e-14 76.6
Msa0869960 AT3G20010.5 25.965 285 143 12 352 580 744 1016 3.48e-14 76.6
Msa0869960 AT3G20010.7 25.965 285 143 12 352 580 744 1016 3.48e-14 76.6
Msa0869960 AT3G20010.3 25.795 283 146 11 352 580 478 750 4.28e-14 76.3
Msa0869960 AT3G20010.2 25.795 283 146 11 352 580 453 725 4.89e-14 75.9
Msa0869960 AT2G40770.2 24.260 338 203 10 279 580 1264 1584 1.04e-12 72.0
Msa0869960 AT2G40770.1 24.260 338 203 10 279 580 1264 1584 1.04e-12 72.0
Msa0869960 AT2G40770.3 24.260 338 203 10 279 580 1264 1584 1.04e-12 72.0

Find 140 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCTTGTGAACATGTT+TGG 0.167220 6_1:-4230373 Msa0869960:three_prime_UTR
TTTCTCTTGTGAACATGTTT+GGG 0.208944 6_1:-4230372 Msa0869960:three_prime_UTR
AATTATCGACGAACATTAAA+TGG 0.213214 6_1:-4234061 Msa0869960:CDS
ATAAGTCGGTTGTTCCTAAA+AGG 0.259634 6_1:+4232639 None:intergenic
TGCGTCTAATGTCTACTTAA+TGG 0.288767 6_1:-4232258 Msa0869960:CDS
ATGAAGAACTATCGCCGTTT+TGG 0.291991 6_1:-4234421 Msa0869960:CDS
TCCGCACAACACGTTACTTC+TGG 0.292776 6_1:+4232080 None:intergenic
TGCTATTGAGAAATTTAATA+TGG 0.317635 6_1:-4232369 Msa0869960:CDS
TAATTCGATGTTATCATTGT+TGG 0.353044 6_1:-4232468 Msa0869960:CDS
GAATTAGACGAAGGATAATA+AGG 0.353140 6_1:+4233354 None:intergenic
ACAATCTCTCCACCAGTTGC+AGG 0.362141 6_1:-4233988 Msa0869960:CDS
GAGAAAGATCGGATCCATTC+AGG 0.366781 6_1:+4234012 None:intergenic
CTTCAATGACTGTAAAGCTT+TGG 0.375209 6_1:-4234315 Msa0869960:CDS
TGTTCTCGAGATAACGTAGA+AGG 0.377618 6_1:+4233420 None:intergenic
TTTCTTTAAATGTGGCTTCT+GGG 0.385362 6_1:+4232823 None:intergenic
ATAAGGAGAGACTGTAGGTA+AGG 0.388381 6_1:+4233371 None:intergenic
ATCAATTTCATTTGCTTGCA+AGG 0.391349 6_1:+4230257 None:intergenic
TCATCAGATTGCATGTTAAA+CGG 0.395781 6_1:+4233885 None:intergenic
GCAAGAAAAGGGCTGAGAAA+TGG 0.399492 6_1:-4232229 Msa0869960:CDS
TTGGAAACGTTCACGACGTA+AGG 0.402528 6_1:-4234402 Msa0869960:CDS
TCAGCTTTCTGGCGAGGAAC+TGG 0.406112 6_1:-4233480 Msa0869960:CDS
CAGTGGATCCTCAAACCCTT+AGG 0.409199 6_1:+4234164 None:intergenic
CCGCACAACACGTTACTTCT+GGG 0.418368 6_1:+4232081 None:intergenic
GTCAGAACAGGTAAGACATT+TGG 0.418623 6_1:+4232664 None:intergenic
TAATGGAAGCTTGCAAGAAA+AGG 0.422397 6_1:-4232241 Msa0869960:CDS
AATTGTTGAGGAGGAGGAAG+AGG 0.427098 6_1:-4233847 Msa0869960:intron
CAAGAAAAGGGCTGAGAAAT+GGG 0.427490 6_1:-4232228 Msa0869960:CDS
TCCTAAAAGGGTGTCAGAAC+AGG 0.433413 6_1:+4232652 None:intergenic
GAAAGTGACATGTAAACTAT+AGG 0.436446 6_1:+4230343 None:intergenic
CGTCGTGAACGTTTCCAAAA+CGG 0.444644 6_1:+4234407 None:intergenic
TGTTGTATCAACCATTGAAA+AGG 0.450104 6_1:+4232030 None:intergenic
ACGATCTTATGCGGCTTGAT+TGG 0.450379 6_1:-4234208 Msa0869960:CDS
ATTTAATATGGCGACGTCAA+TGG 0.452794 6_1:-4232357 Msa0869960:CDS
GTTACTTCTGGGCTCACATT+CGG 0.454378 6_1:+4232092 None:intergenic
ATCGCATATCAGCCTGCAAC+TGG 0.455568 6_1:+4233976 None:intergenic
CATCAGATTGCATGTTAAAC+GGG 0.456069 6_1:+4233886 None:intergenic
TTTGCCGATGTCGACCTGAA+TGG 0.458251 6_1:-4234026 Msa0869960:CDS
CATCCACCGGACGGGACAAA+AGG 0.461287 6_1:-4232195 Msa0869960:CDS
AATGATTCGCAGAACTTTGA+CGG 0.463926 6_1:+4232169 None:intergenic
ATAGTTGCCCTAAGGGTTTG+AGG 0.470104 6_1:-4234172 Msa0869960:CDS
TGTAATCTTGTATAGCCTGC+AGG 0.473512 6_1:+4233320 None:intergenic
GATGCGTTATGTGCAGTTTG+TGG 0.485154 6_1:-4232773 Msa0869960:CDS
AATGGAAGCTTGCAAGAAAA+GGG 0.491625 6_1:-4232240 Msa0869960:CDS
TGGTATCTTGCCTCCAATTG+AGG 0.492275 6_1:-4233519 Msa0869960:CDS
ATTGAAGATGCCTCCTCTGA+AGG 0.494522 6_1:+4234331 None:intergenic
TTCTCTTGTGAACATGTTTG+GGG 0.502146 6_1:-4230371 Msa0869960:three_prime_UTR
TTGAAGATGCCTCCTCTGAA+GGG 0.504249 6_1:+4234332 None:intergenic
GTATCTTGATAGTTGCCCTA+AGG 0.504349 6_1:-4234180 Msa0869960:CDS
TTGTATAGCCTGCAGGGGAG+TGG 0.507572 6_1:+4233327 None:intergenic
TTCCATGGTACTTGATTCAT+CGG 0.509123 6_1:-4232579 Msa0869960:CDS
TAAGGAGAGACTGTAGGTAA+GGG 0.509372 6_1:+4233372 None:intergenic
TATCTTGATAGTTGCCCTAA+GGG 0.509478 6_1:-4234179 Msa0869960:CDS
TTTAATCCACATTAATGTGA+AGG 0.510767 6_1:-4230449 Msa0869960:three_prime_UTR
ATTCTCAACCACTCCCCTGC+AGG 0.512949 6_1:-4233335 Msa0869960:CDS
ATGATTCGCAGAACTTTGAC+GGG 0.514651 6_1:+4232170 None:intergenic
CGCAGAACAAAGGTTGATGT+TGG 0.516753 6_1:-4233539 Msa0869960:CDS
GGAGAGACTGTAGGTAAGGG+AGG 0.520665 6_1:+4233375 None:intergenic
ATGCCTCCTCTGAAGGGGCT+AGG 0.523609 6_1:+4234338 None:intergenic
TTAATCCACATTAATGTGAA+GGG 0.524200 6_1:-4230448 Msa0869960:three_prime_UTR
TAAGTCGGTTGTTCCTAAAA+GGG 0.524800 6_1:+4232640 None:intergenic
GTAATCAAACTATGAACAGT+TGG 0.527859 6_1:+4232743 None:intergenic
GCGTAAAATTGTTGAGGAGG+AGG 0.528992 6_1:-4233853 Msa0869960:CDS
GTCAAATGCATCCACCGGAC+GGG 0.529042 6_1:-4232203 Msa0869960:CDS
CGACGAACATTAAATGGAGG+AGG 0.529173 6_1:-4234055 Msa0869960:CDS
AGTGGATCCTCAAACCCTTA+GGG 0.529703 6_1:+4234165 None:intergenic
CATAGTTTGATTACAAAGTG+TGG 0.535395 6_1:-4232734 Msa0869960:CDS
TTTCTGGCGAGGAACTGGTT+AGG 0.536442 6_1:-4233475 Msa0869960:CDS
GAGAGATTGTTGAGAAAGAT+CGG 0.537027 6_1:+4234001 None:intergenic
ATCAAAGCTGAAACTGAAAA+CGG 0.540986 6_1:-4232305 Msa0869960:CDS
GTAATCTTGTATAGCCTGCA+GGG 0.544057 6_1:+4233321 None:intergenic
TGGAAACGTTCACGACGTAA+GGG 0.544869 6_1:-4234401 Msa0869960:CDS
ATACTAACAAGAAGAACCAC+TGG 0.545770 6_1:+4232326 None:intergenic
TGCTTCTGCACGATCTTATG+CGG 0.550462 6_1:-4234217 Msa0869960:CDS
TTGCACTAAATGAAAAGCAC+CGG 0.551848 6_1:-4231998 Msa0869960:intron
AGGAGTTGTGGTCCTGACGC+CGG 0.552509 6_1:+4233395 None:intergenic
ATCAAACTATGAACAGTTGG+AGG 0.553793 6_1:+4232746 None:intergenic
CTTCTCAAGTACACGGCGAT+CGG 0.559122 6_1:+4234508 None:intergenic
AGATCGTGCAGAAGCAATGT+TGG 0.559615 6_1:+4234224 None:intergenic
ATTGCATGTTAAACGGGTCG+AGG 0.562264 6_1:+4233892 None:intergenic
ACGTTATCTCGAGAACAAAC+CGG 0.564021 6_1:-4233414 Msa0869960:CDS
AGTTGCAGGCTGATATGCGA+TGG 0.568469 6_1:-4233974 Msa0869960:CDS
GACATTTGGAAACGCGTGCA+AGG 0.570108 6_1:+4232678 None:intergenic
AATTACATTGCGCAGAACAA+AGG 0.570385 6_1:-4233549 Msa0869960:CDS
GCATATCAGCCTGCAACTGG+TGG 0.570912 6_1:+4233979 None:intergenic
GGAAACGTTCACGACGTAAG+GGG 0.571076 6_1:-4234400 Msa0869960:CDS
TGTAGGTAAGGGAGGAGTTG+TGG 0.571870 6_1:+4233383 None:intergenic
TCGTAAGGCTGAGTCTTCCA+TGG 0.572228 6_1:-4232594 Msa0869960:CDS
TGTTGTACAACCTCCTCGTA+AGG 0.572321 6_1:-4232609 Msa0869960:CDS
ATATCTCAAACATGTAAGTG+TGG 0.577899 6_1:+4230553 None:intergenic
AAGCTGAAACTGAAAACGGA+AGG 0.580290 6_1:-4232301 Msa0869960:CDS
TCTATGTTGTCTGATGCTCA+TGG 0.583561 6_1:-4234279 Msa0869960:CDS
GTTCACCCTTCACATTAATG+TGG 0.585323 6_1:+4230443 None:intergenic
GGGTATGTCAACAAGGTTAG+CGG 0.586667 6_1:-4234380 Msa0869960:CDS
AATATCGTAACAAAGAAGAT+CGG 0.590061 6_1:-4234250 Msa0869960:CDS
TACAAGATTACAAGTTCATG+AGG 0.590425 6_1:-4233309 Msa0869960:CDS
TATCTCAAACATGTAAGTGT+GGG 0.591944 6_1:+4230554 None:intergenic
GGATCCATTCAGGTCGACAT+CGG 0.595453 6_1:+4234022 None:intergenic
AACGAAACGAAATGTTGTCA+AGG 0.598122 6_1:-4234550 None:intergenic
TCTCTTGTGAACATGTTTGG+GGG 0.599544 6_1:-4230370 Msa0869960:three_prime_UTR
TGTCAAATGCATCCACCGGA+CGG 0.602750 6_1:-4232204 Msa0869960:CDS
TCTTCAGCGTAAAATTGTTG+AGG 0.607210 6_1:-4233859 Msa0869960:CDS
GGGCTGTCAAATGCATCCAC+CGG 0.607984 6_1:-4232208 Msa0869960:CDS
CGGTTACCATGTTGAAGCTG+TGG 0.608610 6_1:-4234468 Msa0869960:CDS
TCAGCGTAAAATTGTTGAGG+AGG 0.609573 6_1:-4233856 Msa0869960:CDS
TCTACGAGAAATTGATCTTG+TGG 0.609963 6_1:-4234108 Msa0869960:CDS
AATGTTGTCAAGGGACGTGA+AGG 0.610165 6_1:-4234540 Msa0869960:CDS
ACCATGTTGAAGCTGTGGAA+TGG 0.615303 6_1:-4234463 Msa0869960:CDS
TAGCATGCAAGTAACTTACA+TGG 0.616917 6_1:-4230410 Msa0869960:three_prime_UTR
GGATAATAAGGAGAGACTGT+AGG 0.620753 6_1:+4233366 None:intergenic
AAAACTACAGACTTTGTGGT+AGG 0.621272 6_1:+4232500 None:intergenic
TCAACATGGTAACCGACAAG+AGG 0.621659 6_1:+4234476 None:intergenic
TGAAGATGCCTCCTCTGAAG+GGG 0.624514 6_1:+4234333 None:intergenic
GACGAACATTAAATGGAGGA+GGG 0.628061 6_1:-4234054 Msa0869960:CDS
GTCCGATGAATCAAGTACCA+TGG 0.628500 6_1:+4232577 None:intergenic
AGCTGAAACTGAAAACGGAA+GGG 0.631666 6_1:-4232300 Msa0869960:CDS
ACGAAACGAAATGTTGTCAA+GGG 0.632738 6_1:-4234549 None:intergenic
CGACCTAGCCCCTTCAGAGG+AGG 0.633551 6_1:-4234341 Msa0869960:CDS
ATGAGCATCAGACAACATAG+AGG 0.637765 6_1:+4234281 None:intergenic
CACACAGCTTATAACATCAG+TGG 0.638163 6_1:-4233579 Msa0869960:intron
CAGATTTCACAGTAAAACAG+TGG 0.638939 6_1:+4234147 None:intergenic
TTTCGAACTTCTCAAGTACA+CGG 0.640202 6_1:+4234501 None:intergenic
GTTCTCGAGATAACGTAGAA+GGG 0.640463 6_1:+4233421 None:intergenic
TGATTCATCGGACACTAACA+AGG 0.641324 6_1:-4232567 Msa0869960:CDS
TCCATTCCACAGCTTCAACA+TGG 0.641656 6_1:+4234462 None:intergenic
GAACGACCTAGCCCCTTCAG+AGG 0.647009 6_1:-4234344 Msa0869960:CDS
ATGGAAGACTCAGCCTTACG+AGG 0.660133 6_1:+4232596 None:intergenic
TATCGACGAACATTAAATGG+AGG 0.662474 6_1:-4234058 Msa0869960:CDS
TACAACATATGAGAATAAGT+CGG 0.664851 6_1:+4232625 None:intergenic
AGTGGTTGAGAATTAGACGA+AGG 0.669339 6_1:+4233345 None:intergenic
GTTGCAGGCTGATATGCGAT+GGG 0.673289 6_1:-4233973 Msa0869960:CDS
TAATCTTGTATAGCCTGCAG+GGG 0.678789 6_1:+4233322 None:intergenic
ACGTAAGGGGTATGTCAACA+AGG 0.683656 6_1:-4234387 Msa0869960:CDS
TTTCTCAATAGCACTAGCCG+CGG 0.685061 6_1:+4232379 None:intergenic
CCCAGAAGTAACGTGTTGTG+CGG 0.693004 6_1:-4232081 Msa0869960:CDS
GCTCATCAACATCACAGACA+CGG 0.703967 6_1:+4230518 None:intergenic
GAAGACTCAGCCTTACGAGG+AGG 0.718769 6_1:+4232599 None:intergenic
GTCAATGGAAGATAAACCAG+TGG 0.724126 6_1:-4232342 Msa0869960:CDS
CATTGCAAAGAACACCATCG+AGG 0.734720 6_1:-4232150 Msa0869960:CDS
ATGACAAGCAAAGATCACGA+AGG 0.757576 6_1:+4233922 None:intergenic
GAATGGTAGAGATATGACCG+CGG 0.794453 6_1:-4232396 Msa0869960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAGAAAAAAGAAAAAA+AGG + chr6_1:4231042-4231061 None:intergenic 15.0%
!!! ACACTTTTAAGAAAAAAATA+TGG + chr6_1:4233387-4233406 None:intergenic 15.0%
!! TATATTAACATGTAAACTAT+AGG + chr6_1:4233778-4233797 None:intergenic 15.0%
!! TATTTATTAATTGTACATGA+CGG - chr6_1:4234088-4234107 Msa0869960:CDS 15.0%
!!! TTTTGGCAAAATTACTTAAA+AGG + chr6_1:4231617-4231636 None:intergenic 20.0%
!!! TCAAACTTTTTCTTTAAATG+TGG + chr6_1:4231996-4232015 None:intergenic 20.0%
!!! TACACTTTTTGCAATAAATA+TGG + chr6_1:4232100-4232119 None:intergenic 20.0%
!! TGCTATTGAGAAATTTAATA+TGG - chr6_1:4232439-4232458 Msa0869960:CDS 20.0%
!! GAAAGATTAAAAGTTGAAAA+AGG + chr6_1:4232849-4232868 None:intergenic 20.0%
!!! AAATGAAATGAAATTCCTTT+TGG - chr6_1:4233966-4233985 Msa0869960:CDS 20.0%
!! ATTATGAGAAAAAGTGAAAA+AGG + chr6_1:4234025-4234044 None:intergenic 20.0%
!! GTCATGTACAATTAATAAAT+AGG + chr6_1:4234089-4234108 None:intergenic 20.0%
!! ATTTATTAATTGTACATGAC+GGG - chr6_1:4234089-4234108 Msa0869960:CDS 20.0%
! AATATCGTAACAAAGAAGAT+CGG - chr6_1:4230558-4230577 Msa0869960:three_prime_UTR 25.0%
! AATTATCGACGAACATTAAA+TGG - chr6_1:4230747-4230766 Msa0869960:intron 25.0%
! AAGTAAATGTGCATATAAGA+AGG + chr6_1:4231205-4231224 None:intergenic 25.0%
!! AAATGATTTTCTACCTCAAT+TGG + chr6_1:4231305-4231324 None:intergenic 25.0%
!! AATCATTTTATTCAGCTTTC+TGG - chr6_1:4231317-4231336 Msa0869960:intron 25.0%
!! ACTGCATTTCTTTTTCTTTT+TGG + chr6_1:4231634-4231653 None:intergenic 25.0%
! AGTATTCCAAATGTATGAAT+AGG - chr6_1:4231651-4231670 Msa0869960:intron 25.0%
! GTATTCCAAATGTATGAATA+GGG - chr6_1:4231652-4231671 Msa0869960:intron 25.0%
! TATTCCAAATGTATGAATAG+GGG - chr6_1:4231653-4231672 Msa0869960:intron 25.0%
!!! ACTTTTAAAACTAAAACCAC+CGG + chr6_1:4231810-4231829 None:intergenic 25.0%
!!! GGTTTTAGTTTTAAAAGTGA+AGG - chr6_1:4231812-4231831 Msa0869960:intron 25.0%
!!! TTTTAAAAGTGAAGGAAAGA+TGG - chr6_1:4231820-4231839 Msa0869960:intron 25.0%
! TCAATGCATGTATATAAAGA+TGG + chr6_1:4231859-4231878 None:intergenic 25.0%
! TACAACATATGAGAATAAGT+CGG + chr6_1:4232186-4232205 None:intergenic 25.0%
! TAATTCGATGTTATCATTGT+TGG - chr6_1:4232340-4232359 Msa0869960:CDS 25.0%
! ATTGTTGGAAAAAACTTTGT+TGG - chr6_1:4232355-4232374 Msa0869960:CDS 25.0%
!! AAAATACACCTTGTTTCAAA+TGG + chr6_1:4232969-4232988 None:intergenic 25.0%
! ATAATGTCAGTGTATTCAAA+CGG + chr6_1:4233096-4233115 None:intergenic 25.0%
! GCATCACTATACAAATAAAT+AGG + chr6_1:4233313-4233332 None:intergenic 25.0%
! AATGATAGTAATAGCAATAC+TGG + chr6_1:4233433-4233452 None:intergenic 25.0%
! AGAGATAAATAACATAAGTG+AGG - chr6_1:4233607-4233626 Msa0869960:intron 25.0%
! AATTATTCGAACAACTTTGA+CGG + chr6_1:4233855-4233874 None:intergenic 25.0%
!!! CACTAGTATTTTTTCTTCAA+TGG + chr6_1:4233888-4233907 None:intergenic 25.0%
! AACTTTATTCATCTTCCAAA+AGG + chr6_1:4233984-4234003 None:intergenic 25.0%
! AGAAAAAGTGAAAAAGGATT+AGG + chr6_1:4234019-4234038 None:intergenic 25.0%
! TAAGTAAATGAGGAAAAATG+AGG + chr6_1:4234173-4234192 None:intergenic 25.0%
! TTTAATCCACATTAATGTGA+AGG - chr6_1:4234359-4234378 Msa0869960:CDS 25.0%
! TTAATCCACATTAATGTGAA+GGG - chr6_1:4234360-4234379 Msa0869960:CDS 25.0%
!!! TGAAAGTCAACTTTTTTTCG+AGG + chr6_1:4230866-4230885 None:intergenic 30.0%
TCATCAGATTGCATGTTAAA+CGG + chr6_1:4230926-4230945 None:intergenic 30.0%
CTTCAGATATAACATGTTCT+TGG - chr6_1:4231128-4231147 Msa0869960:intron 30.0%
GAATTAGACGAAGGATAATA+AGG + chr6_1:4231457-4231476 None:intergenic 30.0%
TACAAGATTACAAGTTCATG+AGG - chr6_1:4231499-4231518 Msa0869960:intron 30.0%
! CTACTAGTCTAGATACATTA+AGG + chr6_1:4231587-4231606 None:intergenic 30.0%
TAGGGGAACACTAAATTAAA+TGG - chr6_1:4231670-4231689 Msa0869960:intron 30.0%
AGGGGAACACTAAATTAAAT+GGG - chr6_1:4231671-4231690 Msa0869960:intron 30.0%
! TGGAGTTTTTGTGGTTTATT+TGG - chr6_1:4231725-4231744 Msa0869960:intron 30.0%
!!! CTTTTAAAACTAAAACCACC+GGG + chr6_1:4231809-4231828 None:intergenic 30.0%
ATAAAATCAAATGCCATGCT+TGG + chr6_1:4231909-4231928 None:intergenic 30.0%
TTTCTTTAAATGTGGCTTCT+GGG + chr6_1:4231988-4232007 None:intergenic 30.0%
! TTTTCTTTAAATGTGGCTTC+TGG + chr6_1:4231989-4232008 None:intergenic 30.0%
GTAATCAAACTATGAACAGT+TGG + chr6_1:4232068-4232087 None:intergenic 30.0%
CATAGTTTGATTACAAAGTG+TGG - chr6_1:4232074-4232093 Msa0869960:CDS 30.0%
TGAAAAAACTACAGACTTTG+TGG + chr6_1:4232315-4232334 None:intergenic 30.0%
TTCATATCAAAAAGACACAG+AGG + chr6_1:4232395-4232414 None:intergenic 30.0%
! CTGTGTCTTTTTGATATGAA+TGG - chr6_1:4232395-4232414 Msa0869960:CDS 30.0%
ATCAAAGCTGAAACTGAAAA+CGG - chr6_1:4232503-4232522 Msa0869960:CDS 30.0%
! GAAATGAGTTTCCTTTTCAA+TGG - chr6_1:4232767-4232786 Msa0869960:CDS 30.0%
TGTTGTATCAACCATTGAAA+AGG + chr6_1:4232781-4232800 None:intergenic 30.0%
GTAAAAGTGGAAAAAGGATA+AGG + chr6_1:4232874-4232893 None:intergenic 30.0%
TTCTGAGTAAAAGTGGAAAA+AGG + chr6_1:4232880-4232899 None:intergenic 30.0%
CAGATAATTCTGAGTAAAAG+TGG + chr6_1:4232887-4232906 None:intergenic 30.0%
! GTATTTTATGTCAATGAACC+TGG - chr6_1:4232982-4233001 Msa0869960:intron 30.0%
TCAAACAAGTAAGACAATTC+AGG + chr6_1:4233019-4233038 None:intergenic 30.0%
TAATGTCAGTGTATTCAAAC+GGG + chr6_1:4233095-4233114 None:intergenic 30.0%
TGATTGATTAAAGCATGAGA+TGG - chr6_1:4233161-4233180 Msa0869960:intron 30.0%
AGCTGGTTATTAATTAAGAC+TGG - chr6_1:4233215-4233234 Msa0869960:intron 30.0%
GCTGGTTATTAATTAAGACT+GGG - chr6_1:4233216-4233235 Msa0869960:intron 30.0%
CTGGTTATTAATTAAGACTG+GGG - chr6_1:4233217-4233236 Msa0869960:intron 30.0%
AATAACATAAGTGAGGAAAG+TGG - chr6_1:4233614-4233633 Msa0869960:intron 30.0%
ATTATTCGAACAACTTTGAC+GGG + chr6_1:4233854-4233873 None:intergenic 30.0%
AAAGTGAAAAAGGATTAGGA+AGG + chr6_1:4234015-4234034 None:intergenic 30.0%
!! GTTTCATTTTTCACTGATGT+CGG - chr6_1:4234129-4234148 Msa0869960:CDS 30.0%
!! TTTCATTTTTCACTGATGTC+GGG - chr6_1:4234130-4234149 Msa0869960:CDS 30.0%
AAATGAGGAAAAATGAGGAA+AGG + chr6_1:4234168-4234187 None:intergenic 30.0%
GAAGTCAGAATAAGTAAATG+AGG + chr6_1:4234183-4234202 None:intergenic 30.0%
! CTTCTTTTATTACCTGCAAA+GGG + chr6_1:4234231-4234250 None:intergenic 30.0%
TATCTCAAACATGTAAGTGT+GGG + chr6_1:4234257-4234276 None:intergenic 30.0%
ATATCTCAAACATGTAAGTG+TGG + chr6_1:4234258-4234277 None:intergenic 30.0%
TTTCTCTTGTGAACATGTTT+GGG - chr6_1:4233746-4233765 Msa0869960:intron 30.0%
GAAAGTGACATGTAAACTAT+AGG + chr6_1:4234468-4234487 None:intergenic 30.0%
TTTCGAACTTCTCAAGTACA+CGG + chr6_1:4230310-4230329 None:intergenic 35.0%
AAGTTCGAAAAACCTCTTGT+CGG - chr6_1:4230320-4230339 Msa0869960:three_prime_UTR 35.0%
CTTCAATGACTGTAAAGCTT+TGG - chr6_1:4230493-4230512 Msa0869960:three_prime_UTR 35.0%
! TATCTTGATAGTTGCCCTAA+GGG - chr6_1:4230629-4230648 Msa0869960:intron 35.0%
CAGATTTCACAGTAAAACAG+TGG + chr6_1:4230664-4230683 None:intergenic 35.0%
TCTACGAGAAATTGATCTTG+TGG - chr6_1:4230700-4230719 Msa0869960:intron 35.0%
TATCGACGAACATTAAATGG+AGG - chr6_1:4230750-4230769 Msa0869960:intron 35.0%
GAGAGATTGTTGAGAAAGAT+CGG + chr6_1:4230810-4230829 None:intergenic 35.0%
CATCAGATTGCATGTTAAAC+GGG + chr6_1:4230925-4230944 None:intergenic 35.0%
TCTTCAGCGTAAAATTGTTG+AGG - chr6_1:4230949-4230968 Msa0869960:intron 35.0%
! TCATGATTGCATTTTTCTGC+TGG - chr6_1:4231059-4231078 Msa0869960:intron 35.0%
!!! CTTGGCTTTTTAGTTGCTAT+TGG - chr6_1:4231146-4231165 Msa0869960:intron 35.0%
AATTACATTGCGCAGAACAA+AGG - chr6_1:4231259-4231278 Msa0869960:intron 35.0%
! TGATTTTCTACCTCAATTGG+AGG + chr6_1:4231302-4231321 None:intergenic 35.0%
! CAAGTTCATGAGGATTTTGA+AGG - chr6_1:4231509-4231528 Msa0869960:intron 35.0%
CTAGATACATTAAGGAACCT+GGG + chr6_1:4231579-4231598 None:intergenic 35.0%
TCTAGATACATTAAGGAACC+TGG + chr6_1:4231580-4231599 None:intergenic 35.0%
TGTTCCCCTATTCATACATT+TGG + chr6_1:4231660-4231679 None:intergenic 35.0%
!! CAACAGTAACAGATTTTTGG+AGG + chr6_1:4231707-4231726 None:intergenic 35.0%
CTCCAAAAATCTGTTACTGT+TGG - chr6_1:4231705-4231724 Msa0869960:intron 35.0%
! CTCCAACAGTAACAGATTTT+TGG + chr6_1:4231710-4231729 None:intergenic 35.0%
! TGTTACTGTTGGAGTTTTTG+TGG - chr6_1:4231716-4231735 Msa0869960:intron 35.0%
! ACAAGAGATACAAGTTGACA+TGG + chr6_1:4231757-4231776 None:intergenic 35.0%
! CTCTTGTTTGTTTACACTTG+TGG - chr6_1:4231770-4231789 Msa0869960:intron 35.0%
ATAATGTCTATCACCAAGCA+TGG - chr6_1:4231893-4231912 Msa0869960:intron 35.0%
ATCAAACTATGAACAGTTGG+AGG + chr6_1:4232065-4232084 None:intergenic 35.0%
TAAGTCGGTTGTTCCTAAAA+GGG + chr6_1:4232171-4232190 None:intergenic 35.0%
ATAAGTCGGTTGTTCCTAAA+AGG + chr6_1:4232172-4232191 None:intergenic 35.0%
TTCCATGGTACTTGATTCAT+CGG - chr6_1:4232229-4232248 Msa0869960:CDS 35.0%
AAAACTACAGACTTTGTGGT+AGG + chr6_1:4232311-4232330 None:intergenic 35.0%
GTTGGAAAAAACTTTGTTGG+AGG - chr6_1:4232358-4232377 Msa0869960:CDS 35.0%
ATTTAATATGGCGACGTCAA+TGG - chr6_1:4232451-4232470 Msa0869960:CDS 35.0%
ATACTAACAAGAAGAACCAC+TGG + chr6_1:4232485-4232504 None:intergenic 35.0%
TGCGTCTAATGTCTACTTAA+TGG - chr6_1:4232550-4232569 Msa0869960:CDS 35.0%
TAATGGAAGCTTGCAAGAAA+AGG - chr6_1:4232567-4232586 Msa0869960:CDS 35.0%
AATGGAAGCTTGCAAGAAAA+GGG - chr6_1:4232568-4232587 Msa0869960:CDS 35.0%
AATGATTCGCAGAACTTTGA+CGG + chr6_1:4232642-4232661 None:intergenic 35.0%
!!! CTCTAGTATTTTTTCCTCGA+TGG + chr6_1:4232675-4232694 None:intergenic 35.0%
! TTGCACTAAATGAAAAGCAC+CGG - chr6_1:4232810-4232829 Msa0869960:CDS 35.0%
! AAAAGGAATTTGCTCCATAC+CGG + chr6_1:4232832-4232851 None:intergenic 35.0%
! TGCACTGAATATTTGCTGAT+TGG - chr6_1:4232905-4232924 Msa0869960:intron 35.0%
! AGCAATCTTTCTAGAAAGTG+TGG + chr6_1:4232946-4232965 None:intergenic 35.0%
! AGATTGCTCCATTTGAAACA+AGG - chr6_1:4232958-4232977 Msa0869960:intron 35.0%
CTTGAGGTTTATGTATTAGC+TGG - chr6_1:4233198-4233217 Msa0869960:intron 35.0%
TAATAGCAATACTGGACTTG+AGG + chr6_1:4233425-4233444 None:intergenic 35.0%
CCAATGATGGTAGAATAGTT+GGG + chr6_1:4233476-4233495 None:intergenic 35.0%
ACCAATGATGGTAGAATAGT+TGG + chr6_1:4233477-4233496 None:intergenic 35.0%
ACTATTCTACCATCATTGGT+TGG - chr6_1:4233477-4233496 Msa0869960:CDS 35.0%
! CTATTCTACCATCATTGGTT+GGG - chr6_1:4233478-4233497 Msa0869960:CDS 35.0%
GTGAACTTTGTGTTGAAAGT+TGG - chr6_1:4233517-4233536 Msa0869960:CDS 35.0%
!! GGAGAAGAGTACATTTTTGT+CGG - chr6_1:4233538-4233557 Msa0869960:CDS 35.0%
ATTGATAAATGCTGTGGAAG+CGG - chr6_1:4233562-4233581 Msa0869960:CDS 35.0%
ACATTGTTCTATTGCCTACA+CGG - chr6_1:4233707-4233726 Msa0869960:intron 35.0%
TTCTCTTGTGAACATGTTTG+AGG - chr6_1:4233747-4233766 Msa0869960:intron 35.0%
TCTCTTGTGAACATGTTTGA+GGG - chr6_1:4233748-4233767 Msa0869960:intron 35.0%
! GCTTCTTTTATTACCTGCAA+AGG + chr6_1:4234232-4234251 None:intergenic 35.0%
TAGCATGCAAGTAACTTACA+TGG - chr6_1:4234398-4234417 Msa0869960:CDS 35.0%
CTTTCTCTTGTGAACATGTT+TGG - chr6_1:4233745-4233764 Msa0869960:intron 35.0%
TTCTCTTGTGAACATGTTTG+GGG - chr6_1:4233747-4233766 Msa0869960:intron 35.0%
! ATGAAGAACTATCGCCGTTT+TGG - chr6_1:4230387-4230406 Msa0869960:three_prime_UTR 40.0%
ATGAGCATCAGACAACATAG+AGG + chr6_1:4230530-4230549 None:intergenic 40.0%
TCTATGTTGTCTGATGCTCA+TGG - chr6_1:4230529-4230548 Msa0869960:three_prime_UTR 40.0%
! GTATCTTGATAGTTGCCCTA+AGG - chr6_1:4230628-4230647 Msa0869960:intron 40.0%
GACGAACATTAAATGGAGGA+GGG - chr6_1:4230754-4230773 Msa0869960:intron 40.0%
ATGACAAGCAAAGATCACGA+AGG + chr6_1:4230889-4230908 None:intergenic 40.0%
TCAGCGTAAAATTGTTGAGG+AGG - chr6_1:4230952-4230971 Msa0869960:intron 40.0%
!!! TTTTCTGCTGGTTGATGAAG+AGG - chr6_1:4231071-4231090 Msa0869960:intron 40.0%
! GAAGCATACATGAGTTGAAG+AGG + chr6_1:4231112-4231131 None:intergenic 40.0%
CACACAGCTTATAACATCAG+TGG - chr6_1:4231229-4231248 Msa0869960:intron 40.0%
!! TTTTATTCAGCTTTCTGGCG+AGG - chr6_1:4231322-4231341 Msa0869960:intron 40.0%
GTTCTCGAGATAACGTAGAA+GGG + chr6_1:4231390-4231409 None:intergenic 40.0%
TGTTCTCGAGATAACGTAGA+AGG + chr6_1:4231391-4231410 None:intergenic 40.0%
ACGTTATCTCGAGAACAAAC+CGG - chr6_1:4231394-4231413 Msa0869960:intron 40.0%
TAAGGAGAGACTGTAGGTAA+GGG + chr6_1:4231439-4231458 None:intergenic 40.0%
ATAAGGAGAGACTGTAGGTA+AGG + chr6_1:4231440-4231459 None:intergenic 40.0%
GGATAATAAGGAGAGACTGT+AGG + chr6_1:4231445-4231464 None:intergenic 40.0%
AGTGGTTGAGAATTAGACGA+AGG + chr6_1:4231466-4231485 None:intergenic 40.0%
TAATCTTGTATAGCCTGCAG+GGG + chr6_1:4231489-4231508 None:intergenic 40.0%
GTAATCTTGTATAGCCTGCA+GGG + chr6_1:4231490-4231509 None:intergenic 40.0%
TGTAATCTTGTATAGCCTGC+AGG + chr6_1:4231491-4231510 None:intergenic 40.0%
!! ATAATTTGCACCCTTTTCCC+AGG - chr6_1:4231559-4231578 Msa0869960:intron 40.0%
CATTAAGGAACCTGGGAAAA+GGG + chr6_1:4231572-4231591 None:intergenic 40.0%
ACATTAAGGAACCTGGGAAA+AGG + chr6_1:4231573-4231592 None:intergenic 40.0%
GTCAGAACAGGTAAGACATT+TGG + chr6_1:4232147-4232166 None:intergenic 40.0%
TGATTCATCGGACACTAACA+AGG - chr6_1:4232241-4232260 Msa0869960:CDS 40.0%
GAAAAAACTTTGTTGGAGGC+AGG - chr6_1:4232362-4232381 Msa0869960:CDS 40.0%
GTCAATGGAAGATAAACCAG+TGG - chr6_1:4232466-4232485 Msa0869960:CDS 40.0%
AAGCTGAAACTGAAAACGGA+AGG - chr6_1:4232507-4232526 Msa0869960:CDS 40.0%
AGCTGAAACTGAAAACGGAA+GGG - chr6_1:4232508-4232527 Msa0869960:CDS 40.0%
CAAGAAAAGGGCTGAGAAAT+GGG - chr6_1:4232580-4232599 Msa0869960:CDS 40.0%
ATGATTCGCAGAACTTTGAC+GGG + chr6_1:4232641-4232660 None:intergenic 40.0%
!! CTAAATGAAAAGCACCGGTA+TGG - chr6_1:4232815-4232834 Msa0869960:CDS 40.0%
TGTCAATGAACCTGGAAAAC+TGG - chr6_1:4232990-4233009 Msa0869960:intron 40.0%
GTCAATGAACCTGGAAAACT+GGG - chr6_1:4232991-4233010 Msa0869960:intron 40.0%
TCAATGAACCTGGAAAACTG+GGG - chr6_1:4232992-4233011 Msa0869960:intron 40.0%
CCCAACTATTCTACCATCAT+TGG - chr6_1:4233473-4233492 Msa0869960:CDS 40.0%
AAAGAAAGAAACTGCCGTGT+AGG + chr6_1:4233724-4233743 None:intergenic 40.0%
GCACTTGACATCTTTGATAG+AGG + chr6_1:4233807-4233826 None:intergenic 40.0%
! GGGAAAGAGTGCGAAATATT+AGG + chr6_1:4234211-4234230 None:intergenic 40.0%
GTTCACCCTTCACATTAATG+TGG + chr6_1:4234368-4234387 None:intergenic 40.0%
TCTCTTGTGAACATGTTTGG+GGG - chr6_1:4234438-4234457 Msa0869960:CDS 40.0%
TCAACATGGTAACCGACAAG+AGG + chr6_1:4230335-4230354 None:intergenic 45.0%
ACCATGTTGAAGCTGTGGAA+TGG - chr6_1:4230345-4230364 Msa0869960:three_prime_UTR 45.0%
TCCATTCCACAGCTTCAACA+TGG + chr6_1:4230349-4230368 None:intergenic 45.0%
CGTCGTGAACGTTTCCAAAA+CGG + chr6_1:4230404-4230423 None:intergenic 45.0%
TTGGAAACGTTCACGACGTA+AGG - chr6_1:4230406-4230425 Msa0869960:three_prime_UTR 45.0%
TGGAAACGTTCACGACGTAA+GGG - chr6_1:4230407-4230426 Msa0869960:three_prime_UTR 45.0%
! ACGTAAGGGGTATGTCAACA+AGG - chr6_1:4230421-4230440 Msa0869960:three_prime_UTR 45.0%
GGGTATGTCAACAAGGTTAG+CGG - chr6_1:4230428-4230447 Msa0869960:three_prime_UTR 45.0%
TTGAAGATGCCTCCTCTGAA+GGG + chr6_1:4230479-4230498 None:intergenic 45.0%
ATTGAAGATGCCTCCTCTGA+AGG + chr6_1:4230480-4230499 None:intergenic 45.0%
AGATCGTGCAGAAGCAATGT+TGG + chr6_1:4230587-4230606 None:intergenic 45.0%
TGCTTCTGCACGATCTTATG+CGG - chr6_1:4230591-4230610 Msa0869960:intron 45.0%
ACGATCTTATGCGGCTTGAT+TGG - chr6_1:4230600-4230619 Msa0869960:intron 45.0%
ATAGTTGCCCTAAGGGTTTG+AGG - chr6_1:4230636-4230655 Msa0869960:intron 45.0%
AGTGGATCCTCAAACCCTTA+GGG + chr6_1:4230646-4230665 None:intergenic 45.0%
CGACGAACATTAAATGGAGG+AGG - chr6_1:4230753-4230772 Msa0869960:intron 45.0%
GAGAAAGATCGGATCCATTC+AGG + chr6_1:4230799-4230818 None:intergenic 45.0%
ATTGCATGTTAAACGGGTCG+AGG + chr6_1:4230919-4230938 None:intergenic 45.0%
GCGTAAAATTGTTGAGGAGG+AGG - chr6_1:4230955-4230974 Msa0869960:intron 45.0%
AATTGTTGAGGAGGAGGAAG+AGG - chr6_1:4230961-4230980 Msa0869960:intron 45.0%
!! TGCTGGTTGATGAAGAGGAT+AGG - chr6_1:4231076-4231095 Msa0869960:intron 45.0%
!! CGCAGAACAAAGGTTGATGT+TGG - chr6_1:4231269-4231288 Msa0869960:intron 45.0%
TGGTATCTTGCCTCCAATTG+AGG - chr6_1:4231289-4231308 Msa0869960:intron 45.0%
GATGCGTTATGTGCAGTTTG+TGG - chr6_1:4232035-4232054 Msa0869960:exon 45.0%
! ACCTGTTCTGACACCCTTTT+AGG - chr6_1:4232155-4232174 Msa0869960:CDS 45.0%
!! TCCTAAAAGGGTGTCAGAAC+AGG + chr6_1:4232159-4232178 None:intergenic 45.0%
TGTTGTACAACCTCCTCGTA+AGG - chr6_1:4232199-4232218 Msa0869960:CDS 45.0%
GTCCGATGAATCAAGTACCA+TGG + chr6_1:4232234-4232253 None:intergenic 45.0%
GAATGGTAGAGATATGACCG+CGG - chr6_1:4232412-4232431 Msa0869960:CDS 45.0%
TTTCTCAATAGCACTAGCCG+CGG + chr6_1:4232432-4232451 None:intergenic 45.0%
GCAAGAAAAGGGCTGAGAAA+TGG - chr6_1:4232579-4232598 Msa0869960:CDS 45.0%
CATTGCAAAGAACACCATCG+AGG - chr6_1:4232658-4232677 Msa0869960:CDS 45.0%
GTTACTTCTGGGCTCACATT+CGG + chr6_1:4232719-4232738 None:intergenic 45.0%
GGTTGTTATCACGAGTCTTG+AGG - chr6_1:4233182-4233201 Msa0869960:intron 45.0%
! ACCATCATTGGTTGGGATTG+TGG - chr6_1:4233485-4233504 Msa0869960:CDS 45.0%
!! GTCGGCATTGATAAATGCTG+TGG - chr6_1:4233556-4233575 Msa0869960:CDS 45.0%
CATCGCGACAGATGTGTTAT+GGG + chr6_1:4233673-4233692 None:intergenic 45.0%
AAGATGTCAAGTGCATCCAC+CGG - chr6_1:4233813-4233832 Msa0869960:intron 45.0%
CTGCATGAGAAGAGAACAGA+GGG - chr6_1:4233908-4233927 Msa0869960:CDS 45.0%
GCTCATCAACATCACAGACA+CGG + chr6_1:4234293-4234312 None:intergenic 45.0%
CTTCTCAAGTACACGGCGAT+CGG + chr6_1:4230303-4230322 None:intergenic 50.0%
CGGTTACCATGTTGAAGCTG+TGG - chr6_1:4230340-4230359 Msa0869960:three_prime_UTR 50.0%
GGAAACGTTCACGACGTAAG+GGG - chr6_1:4230408-4230427 Msa0869960:three_prime_UTR 50.0%
! TGAAGATGCCTCCTCTGAAG+GGG + chr6_1:4230478-4230497 None:intergenic 50.0%
CAGTGGATCCTCAAACCCTT+AGG + chr6_1:4230647-4230666 None:intergenic 50.0%
TTTGCCGATGTCGACCTGAA+TGG - chr6_1:4230782-4230801 Msa0869960:intron 50.0%
GGATCCATTCAGGTCGACAT+CGG + chr6_1:4230789-4230808 None:intergenic 50.0%
ACAATCTCTCCACCAGTTGC+AGG - chr6_1:4230820-4230839 Msa0869960:intron 50.0%
ATCGCATATCAGCCTGCAAC+TGG + chr6_1:4230835-4230854 None:intergenic 50.0%
AGTTGCAGGCTGATATGCGA+TGG - chr6_1:4230834-4230853 Msa0869960:intron 50.0%
GTTGCAGGCTGATATGCGAT+GGG - chr6_1:4230835-4230854 Msa0869960:intron 50.0%
! TTTCTGGCGAGGAACTGGTT+AGG - chr6_1:4231333-4231352 Msa0869960:intron 50.0%
TGTAGGTAAGGGAGGAGTTG+TGG + chr6_1:4231428-4231447 None:intergenic 50.0%
TGTGGTTGAGAAGCTCTACC+CGG - chr6_1:4231788-4231807 Msa0869960:intron 50.0%
GACATTTGGAAACGCGTGCA+AGG + chr6_1:4232133-4232152 None:intergenic 50.0%
ATGGAAGACTCAGCCTTACG+AGG + chr6_1:4232215-4232234 None:intergenic 50.0%
TCGTAAGGCTGAGTCTTCCA+TGG - chr6_1:4232214-4232233 Msa0869960:CDS 50.0%
TGTCAAATGCATCCACCGGA+CGG - chr6_1:4232604-4232623 Msa0869960:CDS 50.0%
CCGCACAACACGTTACTTCT+GGG + chr6_1:4232730-4232749 None:intergenic 50.0%
CCCAGAAGTAACGTGTTGTG+CGG - chr6_1:4232727-4232746 Msa0869960:CDS 50.0%
TCCGCACAACACGTTACTTC+TGG + chr6_1:4232731-4232750 None:intergenic 50.0%
! ATTCAGGTCCCCAGTTTTCC+AGG + chr6_1:4233003-4233022 None:intergenic 50.0%
GCCACAATCCCAACCAATGA+TGG + chr6_1:4233489-4233508 None:intergenic 50.0%
AAATGCTGTGGAAGCGGTGA+AGG - chr6_1:4233568-4233587 Msa0869960:CDS 50.0%
GCATCGCGACAGATGTGTTA+TGG + chr6_1:4233674-4233693 None:intergenic 50.0%
GCTGCATGAGAAGAGAACAG+AGG - chr6_1:4233907-4233926 Msa0869960:CDS 50.0%
TTCGCACTCTTTCCCTTTGC+AGG - chr6_1:4234216-4234235 Msa0869960:CDS 50.0%
GCATATCAGCCTGCAACTGG+TGG + chr6_1:4230832-4230851 None:intergenic 55.0%
! TCAGCTTTCTGGCGAGGAAC+TGG - chr6_1:4231328-4231347 Msa0869960:intron 55.0%
GGAGAGACTGTAGGTAAGGG+AGG + chr6_1:4231436-4231455 None:intergenic 55.0%
ATTCTCAACCACTCCCCTGC+AGG - chr6_1:4231473-4231492 Msa0869960:intron 55.0%
TTGTATAGCCTGCAGGGGAG+TGG + chr6_1:4231484-4231503 None:intergenic 55.0%
GAAGACTCAGCCTTACGAGG+AGG + chr6_1:4232212-4232231 None:intergenic 55.0%
GGGCTGTCAAATGCATCCAC+CGG - chr6_1:4232600-4232619 Msa0869960:CDS 55.0%
GTCAAATGCATCCACCGGAC+GGG - chr6_1:4232605-4232624 Msa0869960:CDS 55.0%
CATCCACCGGACAGCACAAA+TGG - chr6_1:4233826-4233845 Msa0869960:intron 55.0%
GTTCCATTTGTGCTGTCCGG+TGG + chr6_1:4233832-4233851 None:intergenic 55.0%
CGGGTTCCATTTGTGCTGTC+CGG + chr6_1:4233835-4233854 None:intergenic 55.0%
ACAGAGGGCTCAACTGTGAG+TGG - chr6_1:4233923-4233942 Msa0869960:CDS 55.0%
CTCAACTGTGAGTGGTGTGC+TGG - chr6_1:4233931-4233950 Msa0869960:CDS 55.0%
GAACGACCTAGCCCCTTCAG+AGG - chr6_1:4230464-4230483 Msa0869960:three_prime_UTR 60.0%
! ATGCCTCCTCTGAAGGGGCT+AGG + chr6_1:4230473-4230492 None:intergenic 60.0%
CTCGAGAACAAACCGGCGTC+AGG - chr6_1:4231401-4231420 Msa0869960:intron 60.0%
AGGAGTTGTGGTCCTGACGC+CGG + chr6_1:4231416-4231435 None:intergenic 60.0%
GGTTGAGAAGCTCTACCCGG+TGG - chr6_1:4231791-4231810 Msa0869960:intron 60.0%
CATCCACCGGACGGGACAAA+AGG - chr6_1:4232613-4232632 Msa0869960:CDS 60.0%
! GTTCCTTTTGTCCCGTCCGG+TGG + chr6_1:4232619-4232638 None:intergenic 60.0%
! CGGGTTCCTTTTGTCCCGTC+CGG + chr6_1:4232622-4232641 None:intergenic 60.0%
CGACCTAGCCCCTTCAGAGG+AGG - chr6_1:4230467-4230486 Msa0869960:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 4230269 4234561 4230269 ID=Msa0869960;Name=Msa0869960
chr6_1 mRNA 4230269 4234561 4230269 ID=Msa0869960-mRNA-1;Parent=Msa0869960;Name=Msa0869960-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|1|0.75|1|0.66|0.5|4|362|607
chr6_1 exon 4230269 4230592 4230269 ID=Msa0869960-mRNA-1:exon:1352;Parent=Msa0869960-mRNA-1
chr6_1 exon 4231999 4232851 4231999 ID=Msa0869960-mRNA-1:exon:1351;Parent=Msa0869960-mRNA-1
chr6_1 exon 4233300 4233594 4233300 ID=Msa0869960-mRNA-1:exon:1350;Parent=Msa0869960-mRNA-1
chr6_1 exon 4233848 4234561 4233848 ID=Msa0869960-mRNA-1:exon:1349;Parent=Msa0869960-mRNA-1
chr6_1 CDS 4233848 4234561 4233848 ID=Msa0869960-mRNA-1:cds;Parent=Msa0869960-mRNA-1
chr6_1 CDS 4233300 4233594 4233300 ID=Msa0869960-mRNA-1:cds;Parent=Msa0869960-mRNA-1
chr6_1 CDS 4232037 4232851 4232037 ID=Msa0869960-mRNA-1:cds;Parent=Msa0869960-mRNA-1
chr6_1 three_prime_UTR 4231999 4232036 4231999 ID=Msa0869960-mRNA-1:three_prime_utr;Parent=Msa0869960-mRNA-1
chr6_1 three_prime_UTR 4230269 4230592 4230269 ID=Msa0869960-mRNA-1:three_prime_utr;Parent=Msa0869960-mRNA-1
Gene Sequence

>Msa0869960

ATGTTGTCAAGGGACGTGAAGGAAATTATCGCCGATCGCCGTGTACTTGAGAAGTTCGAAAAACCTCTTGTCGGTTACCATGTTGAAGCTGTGGAATGGATGTTGATCAGAGAGCAGAATGAAGAACTATCGCCGTTTTGGAAACGTTCACGACGTAAGGGGTATGTCAACAAGGTTAGCGGTAAGTACTCAAACGAACGACCTAGCCCCTTCAGAGGAGGCATCTTCAATGACTGTAAAGCTTTGGATATGATAAAACCTCTATGTTGTCTGATGCTCATGGATAATAAATATCGTAACAAAGAAGATCGGAAACCAACATTGCTTCTGCACGATCTTATGCGGCTTGATTGGCTAGAGTATCTTGATAGTTGCCCTAAGGGTTTGAGGATCCACTGTTTTACTGTGAAATCTGACTTCAAATCTGTAGATCTACGAGAAATTGATCTTGTGGTAGTGAGTTATGAACGTCTCAATAAATTATCGACGAACATTAAATGGAGGAGGGTCATTTTTGCCGATGTCGACCTGAATGGATCCGATCTTTCTCAACAATCTCTCCACCAGTTGCAGGCTGATATGCGATGGGTTGTTCCTCGAAAAAAAGTTGACTTTCACCTTCGTGATCTTTGCTTGTCATTGTTGAACCTCGACCCGTTTAACATGCAATCTGATGATCGTCTTCAGCGTAAAATTGTTGAGGAGGAGGAAGAGCTTATAACATCAGTGGCAGAATCAATTACATTGCGCAGAACAAAGGTTGATGTTGGTATCTTGCCTCCAATTGAGGTAGAAAATCATTTTATTCAGCTTTCTGGCGAGGAACTGGTTAGGTATGAAATGACAAAAGACGAAGCTGATGTGACCCTTCTACGTTATCTCGAGAACAAACCGGCGTCAGGACCACAACTCCTCCCTTACCTACAGTCTCTCCTTATTATCCTTCGTCTAATTCTCAACCACTCCCCTGCAGGCTATACAAGATTACAAGTTCATGAGGATTTTGAAGACGTTTCCCAGAAGCCACATTTAAAGAAAAAGTTTGATGATGCGCTGCAAGCAAAAGATGCGTTATGTGCAGTTTGTGGAGAGCCTCCAACTGTTCATAGTTTGATTACAAAGTGTGGCCATATTTATTGCAAAAAGTGTATCAAGAGATACCTTGCACGCGTTTCCAAATGTCTTACCTGTTCTGACACCCTTTTAGGAACAACCGACTTATTCTCATATGTTGTACAACCTCCTCGTAAGGCTGAGTCTTCCATGGTACTTGATTCATCGGACACTAACAAGGTGAAATTGTTGTTGAAGCTTCTAAAAGAACAGAAATCTAAAACACCTACCACAAAGTCTGTAGTTTTTTCACAGTTTAATTCGATGTTATCATTGTTGGAAAAAACTTTGTTGGAGGCAGGTTTCATACCTCTGTGTCTTTTTGATATGAATGGTAGAGATATGACCGCGGCTAGTGCTATTGAGAAATTTAATATGGCGACGTCAATGGAAGATAAACCAGTGGTTCTTCTTGTTAGTATCAAAGCTGAAACTGAAAACGGAAGGGAAAAGTTTGACTTGAAAACTGCGTCTAATGTCTACTTAATGGAAGCTTGCAAGAAAAGGGCTGAGAAATGGGCTGTCAAATGCATCCACCGGACGGGACAAAAGGAACCCGTCAAAGTTCTGCGAATCATTGCAAAGAACACCATCGAGGAAAAAATACTAGAGCTACATGAAAAGAGAATAGAGCCGAATGTGAGCCCAGAAGTAACGTGTTGTGCGGATGCTATTGATGTGAATGAAATGAGTTTCCTTTTCAATGGTTGA
Protein sequence

>Msa0869960

MLSRDVKEIIADRRVLEKFEKPLVGYHVEAVEWMLIREQNEELSPFWKRSRRKGYVNKVSGKYSNERPSPFRGGIFNDCKALDMIKPLCCLMLMDNKYRNKEDRKPTLLLHDLMRLDWLEYLDSCPKGLRIHCFTVKSDFKSVDLREIDLVVVSYERLNKLSTNIKWRRVIFADVDLNGSDLSQQSLHQLQADMRWVVPRKKVDFHLRDLCLSLLNLDPFNMQSDDRLQRKIVEEEEELITSVAESITLRRTKVDVGILPPIEVENHFIQLSGEELVRYEMTKDEADVTLLRYLENKPASGPQLLPYLQSLLIILRLILNHSPAGYTRLQVHEDFEDVSQKPHLKKKFDDALQAKDALCAVCGEPPTVHSLITKCGHIYCKKCIKRYLARVSKCLTCSDTLLGTTDLFSYVVQPPRKAESSMVLDSSDTNKVKLLLKLLKEQKSKTPTTKSVVFSQFNSMLSLLEKTLLEAGFIPLCLFDMNGRDMTAASAIEKFNMATSMEDKPVVLLVSIKAETENGREKFDLKTASNVYLMEACKKRAEKWAVKCIHRTGQKEPVKVLRIIAKNTIEEKILELHEKRIEPNVSPEVTCCADAIDVNEMSFLFNG*