AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871640 MtrunA17_Chr6g0452971 95.200 375 17 1 2 375 1 375 0.0 724
Msa0871640 MtrunA17_Chr6g0452991 93.867 375 22 1 2 375 1 375 0.0 718
Msa0871640 MtrunA17_Chr7g0217021 70.300 367 101 3 2 367 1 360 0.0 529
Msa0871640 MtrunA17_Chr4g0060521 53.079 341 151 4 25 364 23 355 9.69e-124 361
Msa0871640 MtrunA17_Chr6g0478501 49.415 342 166 5 28 367 3 339 3.47e-109 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871640 AT3G47800.1 52.473 364 151 7 5 367 16 358 6.81e-128 372
Msa0871640 AT5G15140.1 56.287 334 139 5 33 365 160 487 4.10e-125 369
Msa0871640 AT3G17940.1 48.204 334 168 4 34 365 10 340 5.77e-109 323
Msa0871640 AT3G01260.1 43.114 334 160 8 33 365 119 423 8.89e-78 246

Find 87 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTCTTAGCTGTTTC+TGG 0.037891 6_1:+6575353 Msa0871640:CDS
ACAATAGTTGAAGGAAAATT+TGG 0.179259 6_1:-6584762 None:intergenic
CATCATTCTTCTCCTTCTTA+TGG 0.188818 6_1:-6575394 None:intergenic
ACTTAGTTAACCATGCTTAT+TGG 0.198189 6_1:+6584310 Msa0871640:CDS
AAATTATGAGTGGTTCTTAA+TGG 0.202194 6_1:-6575292 None:intergenic
AGAGAACAAAGAAGGATTAA+AGG 0.218075 6_1:+6584557 Msa0871640:CDS
AACAACATAACATGCTTATA+AGG 0.235997 6_1:-6584798 None:intergenic
GGAGCTCAGTTTACTCTAAA+TGG 0.254147 6_1:+6578352 Msa0871640:CDS
GTTAATTATGTGCTTAATAA+AGG 0.261601 6_1:+6584528 Msa0871640:CDS
GAGGATTCAGTGATGTTCTT+TGG 0.270041 6_1:+6578815 Msa0871640:CDS
TTTGGATGATTAACAGAATC+AGG 0.298879 6_1:-6584744 None:intergenic
ACTTGACACTATGGAGTATT+AGG 0.299707 6_1:+6575141 Msa0871640:five_prime_UTR
CACCAACAATTTGTGGCTTT+AGG 0.321454 6_1:-6584467 None:intergenic
TAATTTGTTTCAGGAAAGTT+AGG 0.323657 6_1:+6575634 Msa0871640:intron
TTGCTTGCATAATTATGGTT+AGG 0.325838 6_1:-6584260 None:intergenic
GTAACTGTAAGCTACATTCT+AGG 0.330425 6_1:+6584228 Msa0871640:CDS
TTACTTTGAAGGTCACTAAC+TGG 0.341785 6_1:+6575450 Msa0871640:CDS
AAGTTAGGTGATATTGTTCT+TGG 0.341881 6_1:+6575649 Msa0871640:CDS
GCATGGTTAACTAAGTTTAC+TGG 0.345251 6_1:-6584303 None:intergenic
ACCACGTTCAGCACTTTGTT+TGG 0.345777 6_1:+6584707 Msa0871640:CDS
AAAGTCAATGTGGCTGCTTA+TGG 0.373826 6_1:-6575209 None:intergenic
GCTGTTTCTGGATTTGTCAA+TGG 0.379680 6_1:+6575365 Msa0871640:CDS
ATTTGCATTACAGGATTTCC+TGG 0.381140 6_1:+6584195 Msa0871640:intron
ATAGTGATGGATAAGAAATC+AGG 0.386833 6_1:+6584588 Msa0871640:CDS
GACAATAACCTTATTCCAAC+CGG 0.387603 6_1:+6584408 Msa0871640:CDS
CATTAGCAATTAATTTGTAA+TGG 0.396328 6_1:-6578378 None:intergenic
ATTAGCACAACTTGACACTA+TGG 0.396934 6_1:+6575132 Msa0871640:five_prime_UTR
CAGAATGATTCATCATACTT+TGG 0.398226 6_1:+6578295 Msa0871640:intron
GAAGGAAGCAACACTCTTCA+TGG 0.398348 6_1:+6578400 Msa0871640:CDS
GAAAGGTGATCTTACTTTGA+AGG 0.398453 6_1:+6575439 Msa0871640:CDS
TTCCTAAAGCCACAAATTGT+TGG 0.401602 6_1:+6584465 Msa0871640:CDS
TGCTTGCATAATTATGGTTA+GGG 0.403065 6_1:-6584259 None:intergenic
ATTCTTGCACCAACAATTTG+TGG 0.406236 6_1:-6584474 None:intergenic
AAGAACCACTCATAATTTGT+AGG 0.410958 6_1:+6575297 Msa0871640:five_prime_UTR
TATGGTAACTGAATTTGATC+AGG 0.411930 6_1:-6578873 None:intergenic
GGTAGGGTTGCTAACAGAAT+TGG 0.416927 6_1:+6578328 Msa0871640:CDS
TGTGGCTTTAGGAAATCATT+TGG 0.419999 6_1:-6584456 None:intergenic
GCACTATAAAATTGCAATCC+AGG 0.428333 6_1:-6584639 None:intergenic
CTTCTTCACCATCAAAACTA+TGG 0.429647 6_1:-6578891 None:intergenic
TACAAATTAATTGCTAATGA+AGG 0.430661 6_1:+6578382 Msa0871640:CDS
GGAATAAGGTTATTGTCAAA+AGG 0.433564 6_1:-6584402 None:intergenic
TGGTTTCTATATTGATCACT+AGG 0.438928 6_1:-6575189 None:intergenic
TGACTTACAGTATATGCTTC+GGG 0.448080 6_1:-6575682 None:intergenic
GTGAAGAATGATAAGGGAAA+AGG 0.455139 6_1:+6584669 Msa0871640:CDS
CAGTGATGTTCTTTGGAAAG+TGG 0.458791 6_1:+6578822 Msa0871640:CDS
AAGCTTAGTACTAATGCTCC+TGG 0.469025 6_1:+6584621 Msa0871640:CDS
ATGACTTACAGTATATGCTT+CGG 0.470863 6_1:-6575683 None:intergenic
CTTTGGAGCAACCGTTGGTA+GGG 0.471024 6_1:+6578312 Msa0871640:CDS
ACATAGTAGCACAAATATCT+TGG 0.474127 6_1:-6575330 None:intergenic
TGCCACTGTTGTGGTTTCCT+AGG 0.477157 6_1:-6584335 None:intergenic
AAGAGAAGTTTCAACTTCGA+GGG 0.479964 6_1:-6575245 None:intergenic
TACTTTGAAGGTCACTAACT+GGG 0.480765 6_1:+6575451 Msa0871640:CDS
AAAGAGAAGTTTCAACTTCG+AGG 0.483276 6_1:-6575246 None:intergenic
AAATTGTTTGAGCTCAAGAA+AGG 0.494592 6_1:+6575422 Msa0871640:CDS
ATGTATTTACCATTCTTGTC+AGG 0.495301 6_1:-6575500 None:intergenic
GGAAAATTAGAGAACAAAGA+AGG 0.503162 6_1:+6584549 Msa0871640:CDS
TTAACTAAGTTTACTGGTGT+AGG 0.515178 6_1:-6584297 None:intergenic
CAATGGCTCAATCCATAAGA+AGG 0.524105 6_1:+6575382 Msa0871640:CDS
AAGAATGATAAGGGAAAAGG+AGG 0.537569 6_1:+6584672 Msa0871640:CDS
ACTTTGGAGCAACCGTTGGT+AGG 0.537610 6_1:+6578311 Msa0871640:CDS
GGTTTCTATATTGATCACTA+GGG 0.547408 6_1:-6575188 None:intergenic
TTCCTAGGTTCCAATAAGCA+TGG 0.549621 6_1:-6584320 None:intergenic
ATGGTAACTGAATTTGATCA+GGG 0.552134 6_1:-6578872 None:intergenic
AACCATGCTTATTGGAACCT+AGG 0.554831 6_1:+6584318 Msa0871640:CDS
GTGGAAAAGTATGTAAGAGA+AGG 0.556236 6_1:+6578841 Msa0871640:CDS
AGGGTTGCTAACAGAATTGG+AGG 0.557121 6_1:+6578331 Msa0871640:CDS
AGAACATCACTGAATCCTCT+AGG 0.566952 6_1:-6578811 None:intergenic
CTAAAATGTTGCCACTGTTG+TGG 0.568105 6_1:-6584344 None:intergenic
ATATTGATCACTAGGGAATG+TGG 0.568648 6_1:-6575181 None:intergenic
TTAGTCCTACCTGACAAGAA+TGG 0.570956 6_1:+6575491 Msa0871640:CDS
ACAGTTACTCTGAGGTCACC+AGG 0.583416 6_1:-6584213 None:intergenic
TCATACTTTGGAGCAACCGT+TGG 0.584842 6_1:+6578307 Msa0871640:CDS
ATTTACCATTCTTGTCAGGT+AGG 0.589638 6_1:-6575496 None:intergenic
AAAGGTTGCAGCTATAGTGA+TGG 0.595506 6_1:+6584575 Msa0871640:CDS
AGAGAAGTTTCAACTTCGAG+GGG 0.602670 6_1:-6575244 None:intergenic
TAGTGATGGATAAGAAATCA+GGG 0.603466 6_1:+6584589 Msa0871640:CDS
AAAAGCATGTGGAACTTCGG+TGG 0.606360 6_1:-6584829 None:intergenic
TCTGTTAGCAACCCTACCAA+CGG 0.641516 6_1:-6578323 None:intergenic
ACTTTGAAGGTCACTAACTG+GGG 0.657814 6_1:+6575452 Msa0871640:CDS
AAAGCACTATAGATAGTACA+AGG 0.660537 6_1:-6584925 None:intergenic
TCCAAACAAAGTGCTGAACG+TGG 0.666017 6_1:-6584708 None:intergenic
AAAAGAAAGGAAAGTCAATG+TGG 0.671123 6_1:-6575219 None:intergenic
CTTTACTTAGGTGGACCTAG+AGG 0.691401 6_1:+6578796 Msa0871640:intron
TGGTAACTGAATTTGATCAG+GGG 0.692121 6_1:-6578871 None:intergenic
AGAATGATAAGGGAAAAGGA+GGG 0.703237 6_1:+6584673 Msa0871640:CDS
TGTAGCTTACAGTTACTCTG+AGG 0.719186 6_1:-6584221 None:intergenic
AACCTAGGAAACCACAACAG+TGG 0.725872 6_1:+6584333 Msa0871640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTAACATTAATT+TGG - chr6_1:6576282-6576301 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG + chr6_1:6576534-6576553 Msa0871640:intron 10.0%
!! TTAAGTTACTAAATTATTTA+GGG - chr6_1:6576897-6576916 None:intergenic 10.0%
!! ATTAAGTTACTAAATTATTT+AGG - chr6_1:6576898-6576917 None:intergenic 10.0%
!! ACAAAAAAAAAAAAAAAAAC+TGG - chr6_1:6577516-6577535 None:intergenic 10.0%
!! ATTATAATCATAGTAAAATT+TGG - chr6_1:6578546-6578565 None:intergenic 10.0%
!! TGAATTATTATTAATATTGT+TGG - chr6_1:6578623-6578642 None:intergenic 10.0%
!!! ACTTATATGTTTTTTTTTTT+TGG - chr6_1:6579316-6579335 None:intergenic 10.0%
!!! TACTTATATTTTTTTTTTGA+AGG - chr6_1:6579378-6579397 None:intergenic 10.0%
!! GTTAATAAATTATAATTTCA+CGG - chr6_1:6579447-6579466 None:intergenic 10.0%
!!! AAAATATTTTTATACCATTT+AGG - chr6_1:6579478-6579497 None:intergenic 10.0%
!!! ATGGTATAAAAATATTTTAA+AGG + chr6_1:6579480-6579499 Msa0871640:intron 10.0%
!! TAATAAATAATACCATTAAA+AGG + chr6_1:6579700-6579719 Msa0871640:intron 10.0%
!! AATAAATAATACCATTAAAA+GGG + chr6_1:6579701-6579720 Msa0871640:intron 10.0%
!!! AATATTTATATGTTTTTTAG+TGG - chr6_1:6581422-6581441 Msa0871650:intron 10.0%
!! TGTATAAATTAATTTCAAAT+TGG + chr6_1:6582183-6582202 Msa0871640:intron 10.0%
!! ATCAAAAAAAAAAAAAATTG+AGG + chr6_1:6582885-6582904 Msa0871640:intron 10.0%
!!! TTAACACAATTTTAATATAT+AGG + chr6_1:6582976-6582995 Msa0871640:intron 10.0%
!!! TAACACAATTTTAATATATA+GGG + chr6_1:6582977-6582996 Msa0871640:intron 10.0%
!!! TAATGGATTTTATAAATAGA+AGG - chr6_1:6575278-6575297 None:intergenic 15.0%
!! TAAAATGTAATACATATTTC+AGG - chr6_1:6575723-6575742 None:intergenic 15.0%
!!! TAACATTAATTTGGAAATAT+CGG - chr6_1:6576273-6576292 None:intergenic 15.0%
!!! AAATTTAGATATTTGTTGTA+GGG - chr6_1:6576785-6576804 None:intergenic 15.0%
!!! GTAAATAATGTTTTTTTAGA+GGG + chr6_1:6576868-6576887 Msa0871640:intron 15.0%
!!! TAAATAATGTTTTTTTAGAG+GGG + chr6_1:6576869-6576888 Msa0871640:intron 15.0%
!!! TTAATTTTAAGAAAACAATG+TGG + chr6_1:6576984-6577003 Msa0871640:intron 15.0%
!!! ATTGTTGTTCTTTTTTATAA+TGG - chr6_1:6577983-6578002 None:intergenic 15.0%
!!! TATCATTGACATTTTTTTTA+AGG - chr6_1:6578020-6578039 None:intergenic 15.0%
!!! ATATAAAGCAATATTTTTTG+TGG - chr6_1:6578656-6578675 None:intergenic 15.0%
!!! CTTAATATTTTACTTTACTT+AGG + chr6_1:6578784-6578803 Msa0871640:intron 15.0%
!!! AATACTTATATTTTTTTTGG+AGG - chr6_1:6579348-6579367 None:intergenic 15.0%
!! ATTACAAATCATTAACTTAA+AGG + chr6_1:6579510-6579529 Msa0871640:intron 15.0%
!! TTACAAATCATTAACTTAAA+GGG + chr6_1:6579511-6579530 Msa0871640:intron 15.0%
!! TGATACAAAATAAAACTTAA+AGG + chr6_1:6579540-6579559 Msa0871640:intron 15.0%
!!! AATAATATCATTTTGAAGAA+TGG + chr6_1:6579737-6579756 Msa0871640:intron 15.0%
!!! ATAATATCATTTTGAAGAAT+GGG + chr6_1:6579738-6579757 Msa0871640:intron 15.0%
!!! AATATCTCATTCATTTTTTA+GGG - chr6_1:6579780-6579799 Msa0871650:three_prime_UTR 15.0%
!!! TAATATCTCATTCATTTTTT+AGG - chr6_1:6579781-6579800 Msa0871650:three_prime_UTR 15.0%
!!! ACTTTCATACATTTTTTTTA+TGG - chr6_1:6579986-6580005 Msa0871650:three_prime_UTR 15.0%
!!! ACTATTTTTTTTTGTGTTAT+AGG - chr6_1:6580097-6580116 Msa0871650:three_prime_UTR 15.0%
!!! GATATTTTTTTCTTTTTACT+AGG - chr6_1:6580147-6580166 Msa0871650:three_prime_UTR 15.0%
!! ATTTAATCAAGACAAAAAAT+AGG + chr6_1:6580858-6580877 Msa0871640:intron 15.0%
!! TTTAAAAACTGAAAGTAAAT+TGG + chr6_1:6581574-6581593 Msa0871640:intron 15.0%
!! ATTACTCAAATAAATATTCA+AGG + chr6_1:6582122-6582141 Msa0871640:intron 15.0%
!! TTACTCAAATAAATATTCAA+GGG + chr6_1:6582123-6582142 Msa0871640:intron 15.0%
!!! ACAATTAATTGTTTTATGTT+TGG - chr6_1:6582431-6582450 Msa0871650:intron 15.0%
!!! TATGTTTGTATCTTTTTTTA+TGG - chr6_1:6582467-6582486 Msa0871650:intron 15.0%
!! TCTAATATTAAGATTAAGAT+GGG + chr6_1:6583591-6583610 Msa0871640:intron 15.0%
!! ATCAATAAAGCAACAATTAA+TGG - chr6_1:6575552-6575571 None:intergenic 20.0%
!! TTAAAAATCAAGATACGATA+CGG - chr6_1:6576612-6576631 None:intergenic 20.0%
!!! CAAATTTAGATATTTGTTGT+AGG - chr6_1:6576786-6576805 None:intergenic 20.0%
!! CTACAACAAATATCTAAATT+TGG + chr6_1:6576784-6576803 Msa0871640:intron 20.0%
!!! AACGAATAAACCTTTTTTTA+GGG - chr6_1:6576814-6576833 None:intergenic 20.0%
!!! AAACGAATAAACCTTTTTTT+AGG - chr6_1:6576815-6576834 None:intergenic 20.0%
!!! CGTAAATAATGTTTTTTTAG+AGG + chr6_1:6576867-6576886 Msa0871640:intron 20.0%
!!! CTATTTTTGATTTTGATATG+CGG + chr6_1:6577700-6577719 Msa0871640:intron 20.0%
!!! TTTTGTTTGTTTTAGTAAAG+TGG + chr6_1:6578244-6578263 Msa0871640:intron 20.0%
!!! CATTAGCAATTAATTTGTAA+TGG - chr6_1:6578381-6578400 None:intergenic 20.0%
!! TACAAATTAATTGCTAATGA+AGG + chr6_1:6578382-6578401 Msa0871640:CDS 20.0%
!! TTTACTATGATTATAATGTG+TGG + chr6_1:6578549-6578568 Msa0871640:intron 20.0%
!!! AATATTTTACTTTACTTAGG+TGG + chr6_1:6578787-6578806 Msa0871640:intron 20.0%
!! TACATCAGTATTATGAAAAT+TGG - chr6_1:6579137-6579156 None:intergenic 20.0%
!! ATTAACTTAAAGAACCTAAA+TGG + chr6_1:6579461-6579480 Msa0871640:intron 20.0%
!!! TTTTGAAAAAGTAAAAAACC+TGG + chr6_1:6580038-6580057 Msa0871640:intron 20.0%
!!! AATTTCATTTTTTTTTCTCC+AGG - chr6_1:6580059-6580078 Msa0871650:three_prime_UTR 20.0%
!! GGAGAAAAAAAAATGAAATT+AGG + chr6_1:6580059-6580078 Msa0871640:intron 20.0%
!!! AAAATGATATTGATAGTGAT+AGG + chr6_1:6580444-6580463 Msa0871640:intron 20.0%
!! CTAAAGTAAATTTATGTGTT+GGG - chr6_1:6580890-6580909 Msa0871650:intron 20.0%
!!! TCTAAAGTAAATTTATGTGT+TGG - chr6_1:6580891-6580910 Msa0871650:intron 20.0%
!! CACATAAATTTACTTTAGAT+AGG + chr6_1:6580892-6580911 Msa0871640:intron 20.0%
!! AAATTCTGGACTTAATTTAT+AGG - chr6_1:6581172-6581191 Msa0871650:intron 20.0%
!!! ATAAATTAAGTCCAGAATTT+TGG + chr6_1:6581172-6581191 Msa0871640:intron 20.0%
!!! AATTACGTTTTTGTTATTAG+TGG - chr6_1:6581214-6581233 Msa0871650:intron 20.0%
!! TGATAAATAGATAATGAAGT+AGG + chr6_1:6581251-6581270 Msa0871640:intron 20.0%
!!! AGAATTTTTGTTTTGTCAAA+TGG - chr6_1:6581508-6581527 Msa0871650:intron 20.0%
!!! TTTTAAACTTTACCTATGAT+AGG - chr6_1:6581561-6581580 Msa0871650:intron 20.0%
!! AAAAATGATGTAAAGAAATC+AGG + chr6_1:6581884-6581903 Msa0871640:intron 20.0%
!! GATATTTATGAATTTAGATG+TGG - chr6_1:6581950-6581969 Msa0871650:intron 20.0%
!! CAAATTTGATATTCATATTC+TGG - chr6_1:6582060-6582079 Msa0871650:intron 20.0%
!!! TTTATTTTCATATTTTCTGC+AGG - chr6_1:6582339-6582358 Msa0871650:intron 20.0%
!! GAAAATAAATCAGAAAATGA+AGG + chr6_1:6582350-6582369 Msa0871640:intron 20.0%
!! CTAAAGTTATTTATGTTATC+TGG - chr6_1:6582763-6582782 Msa0871650:intron 20.0%
!!! GAAAGTATAATCCAAATTAA+TGG + chr6_1:6582785-6582804 Msa0871640:intron 20.0%
!! AATTTCAGTTTCCATTAATT+TGG - chr6_1:6582799-6582818 Msa0871650:intron 20.0%
!! AAATTAATGGAAACTGAAAT+TGG + chr6_1:6582798-6582817 Msa0871640:intron 20.0%
!! AATTAATGGAAACTGAAATT+GGG + chr6_1:6582799-6582818 Msa0871640:intron 20.0%
!! TCAGCAAAAGAATAATAATA+TGG + chr6_1:6582910-6582929 Msa0871640:intron 20.0%
!! TTTACCTTATAAATATCTTG+TGG + chr6_1:6583011-6583030 Msa0871640:intron 20.0%
!! GTCTAATATTAAGATTAAGA+TGG + chr6_1:6583590-6583609 Msa0871640:intron 20.0%
!! ATCCAAACATATTTATAAAG+AGG - chr6_1:6583720-6583739 None:intergenic 20.0%
!! CTTTATAAATATGTTTGGAT+TGG + chr6_1:6583720-6583739 Msa0871640:intron 20.0%
!! TATGAAATGATACATAGAAA+GGG - chr6_1:6583903-6583922 None:intergenic 20.0%
!! ATATGAAATGATACATAGAA+AGG - chr6_1:6583904-6583923 None:intergenic 20.0%
!!! AACTTTTAGATAATGATGAA+AGG - chr6_1:6584010-6584029 None:intergenic 20.0%
!! ATATAAACTACCCTTATATA+AGG + chr6_1:6584037-6584056 Msa0871640:intron 20.0%
!! ATAGTATTTATTTGCATTAC+AGG + chr6_1:6584186-6584205 Msa0871640:intron 20.0%
!! AATCAATTACCAAAAACTAA+TGG + chr6_1:6584498-6584517 Msa0871640:CDS 20.0%
!! GTTAATTATGTGCTTAATAA+AGG + chr6_1:6584528-6584547 Msa0871640:CDS 20.0%
!!! AAATTTTGTGAAGAATGATA+AGG + chr6_1:6584662-6584681 Msa0871640:CDS 20.0%
!!! AATTTTGTGAAGAATGATAA+GGG + chr6_1:6584663-6584682 Msa0871640:CDS 20.0%
! AAATTATGAGTGGTTCTTAA+TGG - chr6_1:6575295-6575314 None:intergenic 25.0%
!! ATTTTCCTACAAATTATGAG+TGG - chr6_1:6575305-6575324 None:intergenic 25.0%
!!! TGCTTCTATTAATTTGTTTC+AGG + chr6_1:6575625-6575644 Msa0871640:intron 25.0%
!!! TAATTTGTTTCAGGAAAGTT+AGG + chr6_1:6575634-6575653 Msa0871640:intron 25.0%
!!! TGGATATAGTACTTCTTTTT+TGG + chr6_1:6576334-6576353 Msa0871640:intron 25.0%
! AGTGCTATACTATATCAAAA+AGG - chr6_1:6576388-6576407 None:intergenic 25.0%
!! AATTTGAGATGATAAGTTGT+AGG + chr6_1:6576915-6576934 Msa0871640:intron 25.0%
! TGTCTATGATACTACATTTA+TGG - chr6_1:6576943-6576962 None:intergenic 25.0%
!!! TTTTTTTGTATATGCTCTTG+AGG + chr6_1:6577527-6577546 Msa0871640:intron 25.0%
!!! TTTTTTGTATATGCTCTTGA+GGG + chr6_1:6577528-6577547 Msa0871640:intron 25.0%
! AAAACAATGAAGAGAGAAAA+AGG - chr6_1:6577875-6577894 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr6_1:6577901-6577920 None:intergenic 25.0%
!!! AATAAGTGTTGGAGATTTAA+AGG - chr6_1:6578051-6578070 None:intergenic 25.0%
! ATTAACATGAATGAAATGAC+TGG - chr6_1:6578476-6578495 None:intergenic 25.0%
! TGTGGTACACAAATAATAAT+TGG + chr6_1:6578567-6578586 Msa0871640:intron 25.0%
!!! TTGTTTCTAATAGACATTGA+AGG - chr6_1:6578960-6578979 None:intergenic 25.0%
! CAACAATACTACGATATAAT+TGG + chr6_1:6579049-6579068 Msa0871640:intron 25.0%
!!! AATCACTAGTTCTATACAAA+AGG - chr6_1:6579184-6579203 None:intergenic 25.0%
! GGGCAATAAGATATATTATA+TGG - chr6_1:6579645-6579664 None:intergenic 25.0%
! AAATAGTCTAGAAACAAAAG+AGG + chr6_1:6580110-6580129 Msa0871640:intron 25.0%
! AATAGTCTAGAAACAAAAGA+GGG + chr6_1:6580111-6580130 Msa0871640:intron 25.0%
!!! TCTTTTTTTTACTCTTTCGT+TGG - chr6_1:6580340-6580359 Msa0871650:three_prime_UTR 25.0%
! AAGAGTAAAAAAAAGAAGTC+AGG + chr6_1:6580344-6580363 Msa0871640:intron 25.0%
! ATAGGTGAAAACAAAAATCA+GGG + chr6_1:6580462-6580481 Msa0871640:intron 25.0%
!! ACATTATATGTTTCTTTTGC+AGG - chr6_1:6580572-6580591 Msa0871650:intron 25.0%
! AAAATAAAGCTTCATTCAAG+TGG + chr6_1:6581025-6581044 Msa0871640:intron 25.0%
!!! TTTTGTTTTATCCTTTCCAT+TGG - chr6_1:6581128-6581147 Msa0871650:intron 25.0%
! AAGGATAAAACAAAAGTCAT+AGG + chr6_1:6581133-6581152 Msa0871640:intron 25.0%
! AGGATAAAACAAAAGTCATA+GGG + chr6_1:6581134-6581153 Msa0871640:intron 25.0%
! ATGTGTTACAAATTTGACAT+TGG - chr6_1:6581389-6581408 Msa0871650:intron 25.0%
!! TCTAAATTTGTTCACTAACT+TGG - chr6_1:6581611-6581630 Msa0871650:intron 25.0%
!!! TTTCTTTACATCATTTTTGC+AGG - chr6_1:6581882-6581901 Msa0871650:intron 25.0%
! TAATTTCAAATTGGCATATG+CGG + chr6_1:6582192-6582211 Msa0871640:intron 25.0%
!! GAAATGGATGATTTTATATG+TGG - chr6_1:6582390-6582409 Msa0871650:intron 25.0%
! TTGAAAAACCTGTAAATAAG+AGG + chr6_1:6582576-6582595 Msa0871640:intron 25.0%
! TTGTAAAATTGTCTGAATGA+AGG - chr6_1:6582639-6582658 Msa0871650:intron 25.0%
! ATTAATGGAAACTGAAATTG+GGG + chr6_1:6582800-6582819 Msa0871640:intron 25.0%
!! TTTTGAATCAAAACGAGAAT+CGG - chr6_1:6582866-6582885 Msa0871650:intron 25.0%
! TCAATTCATGAAAAAAGAGA+TGG + chr6_1:6582935-6582954 Msa0871640:intron 25.0%
! ACAACCACAAGATATTTATA+AGG - chr6_1:6583018-6583037 Msa0871650:intron 25.0%
! TTTCAATCTGATTATTGCTT+AGG - chr6_1:6583084-6583103 Msa0871650:intron 25.0%
!! TGAGTTATCATAAGTTTGTT+TGG + chr6_1:6583367-6583386 Msa0871640:intron 25.0%
!!! AAATTTAGCTTTCATGGAAT+AGG - chr6_1:6583473-6583492 None:intergenic 25.0%
! TATTCCATGAAAGCTAAATT+TGG + chr6_1:6583472-6583491 Msa0871640:intron 25.0%
!!! TTTGAGTTTTTGTGATGTAT+AGG + chr6_1:6583510-6583529 Msa0871640:intron 25.0%
! CACCTCTTTATAAATATGTT+TGG + chr6_1:6583715-6583734 Msa0871640:intron 25.0%
!! TATAAATATGTTTGGATTGG+CGG + chr6_1:6583723-6583742 Msa0871640:intron 25.0%
! TTGGGATCTTAAAAAAATCA+TGG - chr6_1:6583774-6583793 None:intergenic 25.0%
!!! TTTTAGGAAAAGTTACGTTT+GGG - chr6_1:6583792-6583811 None:intergenic 25.0%
!!! ATTTTAGGAAAAGTTACGTT+TGG - chr6_1:6583793-6583812 None:intergenic 25.0%
! TTCATATTAGAGATAGTAGT+TGG + chr6_1:6583917-6583936 Msa0871640:intron 25.0%
! GATGTAATCACCTTATATAA+GGG - chr6_1:6584050-6584069 None:intergenic 25.0%
! AGATGTAATCACCTTATATA+AGG - chr6_1:6584051-6584070 None:intergenic 25.0%
!! GATGAAGTTGTTCAAATTTT+TGG + chr6_1:6584366-6584385 Msa0871640:CDS 25.0%
!! TTTGACTGATGAAATTTTTC+CGG - chr6_1:6584430-6584449 None:intergenic 25.0%
!!! ACGTTATAACCATTAGTTTT+TGG - chr6_1:6584510-6584529 None:intergenic 25.0%
! ACAATAGTTGAAGGAAAATT+TGG - chr6_1:6584765-6584784 None:intergenic 25.0%
!! TCTTTTGTAACAATAGTTGA+AGG - chr6_1:6584774-6584793 None:intergenic 25.0%
! AACAACATAACATGCTTATA+AGG - chr6_1:6584801-6584820 None:intergenic 25.0%
!! TATAGTGCTTTTAGTATGTT+TGG + chr6_1:6584937-6584956 Msa0871640:three_prime_UTR 25.0%
GGTTTCTATATTGATCACTA+GGG - chr6_1:6575191-6575210 None:intergenic 30.0%
TGGTTTCTATATTGATCACT+AGG - chr6_1:6575192-6575211 None:intergenic 30.0%
AAAAGAAAGGAAAGTCAATG+TGG - chr6_1:6575222-6575241 None:intergenic 30.0%
! AAGAACCACTCATAATTTGT+AGG + chr6_1:6575297-6575316 Msa0871640:five_prime_UTR 30.0%
ACATAGTAGCACAAATATCT+TGG - chr6_1:6575333-6575352 None:intergenic 30.0%
AAATTGTTTGAGCTCAAGAA+AGG + chr6_1:6575422-6575441 Msa0871640:CDS 30.0%
ATGTATTTACCATTCTTGTC+AGG - chr6_1:6575503-6575522 None:intergenic 30.0%
ATCAAACTAGAATGTTCAAC+TGG + chr6_1:6575592-6575611 Msa0871640:intron 30.0%
AAGTTAGGTGATATTGTTCT+TGG + chr6_1:6575649-6575668 Msa0871640:CDS 30.0%
ATGACTTACAGTATATGCTT+CGG - chr6_1:6575686-6575705 None:intergenic 30.0%
CAAAGAATTGAAGAAAGACT+TGG - chr6_1:6575797-6575816 None:intergenic 30.0%
TTCATAGAAGAAAAGATGTG+TGG - chr6_1:6575828-6575847 None:intergenic 30.0%
! ACACATCTTTTCTTCTATGA+AGG + chr6_1:6575827-6575846 Msa0871640:intron 30.0%
TATCGGTGAAGGATAATTAT+TGG - chr6_1:6576244-6576263 None:intergenic 30.0%
! TTGATATAGTATAGCACTGA+TGG + chr6_1:6576390-6576409 Msa0871640:intron 30.0%
! ATTTTTCTGTATCAGCGTAT+CGG + chr6_1:6576633-6576652 Msa0871640:intron 30.0%
ACCACAAAATATCCAACTTT+GGG + chr6_1:6576697-6576716 Msa0871640:intron 30.0%
!! ATTTGGTGTTCCCTAAAAAA+AGG + chr6_1:6576801-6576820 Msa0871640:intron 30.0%
!! TTTGGTACATGATTTTTGGA+TGG + chr6_1:6577154-6577173 Msa0871640:intron 30.0%
ATTCCTAAAAAACTAGTGTC+AGG - chr6_1:6577383-6577402 None:intergenic 30.0%
!!! TAGTTTTTTAGGAATCACTC+TGG + chr6_1:6577388-6577407 Msa0871640:intron 30.0%
!! AGGGTATTTTCTCTTTTCAT+TGG + chr6_1:6577655-6577674 Msa0871640:intron 30.0%
!!! TCTTTTCATTGGTGTTAGTT+GGG + chr6_1:6577666-6577685 Msa0871640:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr6_1:6577805-6577824 Msa0871640:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr6_1:6577926-6577945 Msa0871640:intron 30.0%
AAGATGTGTTGAATAAGTGT+TGG - chr6_1:6578062-6578081 None:intergenic 30.0%
! CTTCAATGGCAATTCTAAAA+AGG - chr6_1:6578175-6578194 None:intergenic 30.0%
CAGAATGATTCATCATACTT+TGG + chr6_1:6578295-6578314 Msa0871640:intron 30.0%
TGTATTTAGAAACAGAGGAA+GGG - chr6_1:6578445-6578464 None:intergenic 30.0%
ATGTATTTAGAAACAGAGGA+AGG - chr6_1:6578446-6578465 None:intergenic 30.0%
CGATATGTATTTAGAAACAG+AGG - chr6_1:6578450-6578469 None:intergenic 30.0%
TAGATCAGTAAATGCATGAT+TGG + chr6_1:6578515-6578534 Msa0871640:intron 30.0%
CATTTCACCATATAGAAACA+TGG + chr6_1:6578759-6578778 Msa0871640:intron 30.0%
! TTAAGAGCCATGTTTCTATA+TGG - chr6_1:6578769-6578788 None:intergenic 30.0%
ATGGTAACTGAATTTGATCA+GGG - chr6_1:6578875-6578894 None:intergenic 30.0%
TATGGTAACTGAATTTGATC+AGG - chr6_1:6578876-6578895 None:intergenic 30.0%
!!! TTCAGTTACCATAGTTTTGA+TGG + chr6_1:6578883-6578902 Msa0871640:CDS 30.0%
! TCTAGTTCAACTAGTTGAAT+CGG + chr6_1:6579101-6579120 Msa0871640:intron 30.0%
! AACATGTCTATCCCTTTTAA+TGG - chr6_1:6579715-6579734 None:intergenic 30.0%
! ACGAATCTTCTCTTTTTACT+AGG - chr6_1:6580169-6580188 Msa0871650:three_prime_UTR 30.0%
TTCAACTATATGCGTTTCTT+AGG - chr6_1:6580245-6580264 Msa0871650:three_prime_UTR 30.0%
TTTATCACACTCCAAAAACA+CGG - chr6_1:6580416-6580435 Msa0871650:three_prime_UTR 30.0%
GATAGGTGAAAACAAAAATC+AGG + chr6_1:6580461-6580480 Msa0871640:intron 30.0%
ACAGATACTATTTGCAAAGT+AGG + chr6_1:6580492-6580511 Msa0871640:intron 30.0%
! ATTTTATTAGTGCCCATGAA+TGG + chr6_1:6580520-6580539 Msa0871640:intron 30.0%
TTGCAGGAATATACTTTCAA+GGG - chr6_1:6580556-6580575 Msa0871650:intron 30.0%
TTTGCAGGAATATACTTTCA+AGG - chr6_1:6580557-6580576 Msa0871650:intron 30.0%
GATCTTTGCTTCAAGAAATT+TGG - chr6_1:6580625-6580644 Msa0871650:intron 30.0%
CATTGCATTTCTAACAGAAA+AGG + chr6_1:6580702-6580721 Msa0871640:intron 30.0%
CACTGATAATCACTTATCTA+AGG + chr6_1:6580763-6580782 Msa0871640:intron 30.0%
ATTATGCAGAGATATAACCA+TGG + chr6_1:6581066-6581085 Msa0871640:intron 30.0%
!! ATTGGTGTTGTAGTTGTATA+TGG - chr6_1:6581110-6581129 Msa0871650:intron 30.0%
ATATACAACTACAACACCAA+TGG + chr6_1:6581109-6581128 Msa0871640:intron 30.0%
TGTTAAAGCTTCCAAAATTC+TGG - chr6_1:6581186-6581205 Msa0871650:intron 30.0%
! TTCTTCAACCTGATAACTTT+TGG + chr6_1:6581524-6581543 Msa0871640:intron 30.0%
! TCTTCAACCTGATAACTTTT+GGG + chr6_1:6581525-6581544 Msa0871640:intron 30.0%
TAAACTTTACCTATGATAGG+TGG - chr6_1:6581558-6581577 Msa0871650:intron 30.0%
!! ATTTCTGAAACCAACATGAA+TGG + chr6_1:6581634-6581653 Msa0871640:intron 30.0%
TTGGATTTAACCATTCATGT+TGG - chr6_1:6581647-6581666 Msa0871650:intron 30.0%
CAATTTACTCACTTCTTTGT+TGG - chr6_1:6581666-6581685 Msa0871650:intron 30.0%
CAACAAAGAAGTGAGTAAAT+TGG + chr6_1:6581664-6581683 Msa0871640:intron 30.0%
AAGAAGTGAGTAAATTGGTT+TGG + chr6_1:6581669-6581688 Msa0871640:intron 30.0%
!! AAAAAACACTTCTTGCTGTT+TGG - chr6_1:6581706-6581725 Msa0871650:intron 30.0%
GTTTCTTTGTAGATGATCTT+AGG - chr6_1:6581768-6581787 Msa0871650:intron 30.0%
!!! GGTCAGCTTCTATTATTTTT+TGG - chr6_1:6581809-6581828 Msa0871650:intron 30.0%
AAAAATAATAGAAGCTGACC+TGG + chr6_1:6581809-6581828 Msa0871640:intron 30.0%
ATTAAAGGGTTGTGTTATGA+GGG - chr6_1:6581847-6581866 Msa0871650:CDS 30.0%
TATTAAAGGGTTGTGTTATG+AGG - chr6_1:6581848-6581867 Msa0871650:CDS 30.0%
GGTTGCGAGATTATATTAAA+GGG - chr6_1:6581861-6581880 Msa0871650:intron 30.0%
AGGTTGCGAGATTATATTAA+AGG - chr6_1:6581862-6581881 Msa0871650:intron 30.0%
TAAAGAAATCAGGAAAGTGA+AGG + chr6_1:6581894-6581913 Msa0871640:intron 30.0%
ATTAGGATATTGCAAGTCAA+TGG - chr6_1:6581994-6582013 Msa0871650:CDS 30.0%
ACTGCAACATCATAATCATT+AGG + chr6_1:6582025-6582044 Msa0871640:intron 30.0%
!! GCTTTGAGATCATAACTATT+AGG - chr6_1:6582101-6582120 Msa0871650:intron 30.0%
ATAAATATTCAAGGGCTTTG+TGG + chr6_1:6582131-6582150 Msa0871640:intron 30.0%
! TAAATATTCAAGGGCTTTGT+GGG + chr6_1:6582132-6582151 Msa0871640:intron 30.0%
GATATCACTTTACAGTGAAA+TGG - chr6_1:6582406-6582425 Msa0871650:intron 30.0%
! ACAATTTTACAAACACCTTG+TGG + chr6_1:6582647-6582666 Msa0871640:intron 30.0%
! CAATTTTACAAACACCTTGT+GGG + chr6_1:6582648-6582667 Msa0871640:intron 30.0%
GTTATCTGGTTATCGAATTT+CGG - chr6_1:6582749-6582768 Msa0871650:intron 30.0%
TTTGAATCAAAACGAGAATC+GGG - chr6_1:6582865-6582884 Msa0871650:intron 30.0%
TTTCTTTGATCCAGTTTAGA+AGG - chr6_1:6583282-6583301 Msa0871650:five_prime_UTR 30.0%
! TTGGAGTTTTCCTATAATTG+TGG + chr6_1:6583386-6583405 Msa0871640:intron 30.0%
! ATCTTCACTTGTCTTTTAGT+GGG + chr6_1:6583419-6583438 Msa0871640:intron 30.0%
!! TTTGCCAAATTTAGCTTTCA+TGG - chr6_1:6583479-6583498 None:intergenic 30.0%
! CGTAACTTTTCCTAAAATCA+TGG + chr6_1:6583795-6583814 Msa0871640:intron 30.0%
! AACTTTTCCTAAAATCATGG+TGG + chr6_1:6583798-6583817 Msa0871640:intron 30.0%
ATACATAGAAAGGGATGTAA+AGG - chr6_1:6583894-6583913 None:intergenic 30.0%
GATGTGATTACCTCATATAA+GGG + chr6_1:6583982-6584001 Msa0871640:intron 30.0%
TGCTTGCATAATTATGGTTA+GGG - chr6_1:6584262-6584281 None:intergenic 30.0%
TTGCTTGCATAATTATGGTT+AGG - chr6_1:6584263-6584282 None:intergenic 30.0%
! AGCTTTTGCTTGCATAATTA+TGG - chr6_1:6584268-6584287 None:intergenic 30.0%
TTAACTAAGTTTACTGGTGT+AGG - chr6_1:6584300-6584319 None:intergenic 30.0%
ACTTAGTTAACCATGCTTAT+TGG + chr6_1:6584310-6584329 Msa0871640:CDS 30.0%
GGAATAAGGTTATTGTCAAA+AGG - chr6_1:6584405-6584424 None:intergenic 30.0%
! AAATTTTTCCGGTTGGAATA+AGG - chr6_1:6584419-6584438 None:intergenic 30.0%
GGAAAAATTTCATCAGTCAA+AGG + chr6_1:6584429-6584448 Msa0871640:CDS 30.0%
GGAAAATTAGAGAACAAAGA+AGG + chr6_1:6584549-6584568 Msa0871640:CDS 30.0%
AGAGAACAAAGAAGGATTAA+AGG + chr6_1:6584557-6584576 Msa0871640:CDS 30.0%
!! ATAGTGATGGATAAGAAATC+AGG + chr6_1:6584588-6584607 Msa0871640:CDS 30.0%
!! TAGTGATGGATAAGAAATCA+GGG + chr6_1:6584589-6584608 Msa0871640:CDS 30.0%
TTTGGATGATTAACAGAATC+AGG - chr6_1:6584747-6584766 None:intergenic 30.0%
! TAGAATTGTGAAAAAGCATG+TGG - chr6_1:6584843-6584862 None:intergenic 30.0%
! AAAGCACTATAGATAGTACA+AGG - chr6_1:6584928-6584947 None:intergenic 30.0%
ATTAGCACAACTTGACACTA+TGG + chr6_1:6575132-6575151 Msa0871640:five_prime_UTR 35.0%
! ACTTGACACTATGGAGTATT+AGG + chr6_1:6575141-6575160 Msa0871640:five_prime_UTR 35.0%
ATATTGATCACTAGGGAATG+TGG - chr6_1:6575184-6575203 None:intergenic 35.0%
AAGAGAAGTTTCAACTTCGA+GGG - chr6_1:6575248-6575267 None:intergenic 35.0%
AAAGAGAAGTTTCAACTTCG+AGG - chr6_1:6575249-6575268 None:intergenic 35.0%
CATCATTCTTCTCCTTCTTA+TGG - chr6_1:6575397-6575416 None:intergenic 35.0%
GAAAGGTGATCTTACTTTGA+AGG + chr6_1:6575439-6575458 Msa0871640:CDS 35.0%
! TTACTTTGAAGGTCACTAAC+TGG + chr6_1:6575450-6575469 Msa0871640:CDS 35.0%
! TACTTTGAAGGTCACTAACT+GGG + chr6_1:6575451-6575470 Msa0871640:CDS 35.0%
ATTTACCATTCTTGTCAGGT+AGG - chr6_1:6575499-6575518 None:intergenic 35.0%
TGACTTACAGTATATGCTTC+GGG - chr6_1:6575685-6575704 None:intergenic 35.0%
AAGGAGGAGATAAGAAATAG+AGG - chr6_1:6575972-6575991 None:intergenic 35.0%
! CTATTTCTTATCTCCTCCTT+TGG + chr6_1:6575972-6575991 Msa0871640:intron 35.0%
AAGATGACTAGATATCGTCA+CGG - chr6_1:6576004-6576023 None:intergenic 35.0%
!!! TCATCCATTTTGAAGTATCG+TGG - chr6_1:6576082-6576101 None:intergenic 35.0%
GATACTCTTCTGATACGTAT+CGG - chr6_1:6576153-6576172 None:intergenic 35.0%
TAATTTGGAAATATCGGAGC+AGG - chr6_1:6576267-6576286 None:intergenic 35.0%
!!! AGTACTGATGTGTTCTGTTT+TGG + chr6_1:6576314-6576333 Msa0871640:intron 35.0%
CACCACAAAATATCCAACTT+TGG + chr6_1:6576696-6576715 Msa0871640:intron 35.0%
CCACAAAATATCCAACTTTG+GGG + chr6_1:6576698-6576717 Msa0871640:intron 35.0%
TAATTTAGTAGCTCAGCTGT+TGG + chr6_1:6576841-6576860 Msa0871640:intron 35.0%
TGTGGCAACTTCTTCTTTAT+AGG + chr6_1:6577002-6577021 Msa0871640:intron 35.0%
TGCTTTATGTAATGCAGATG+CGG + chr6_1:6577087-6577106 Msa0871640:intron 35.0%
!! GAGGTTTGGTACATGATTTT+TGG + chr6_1:6577150-6577169 Msa0871640:intron 35.0%
!! TACATGATTTTTGGATGGCT+TGG + chr6_1:6577159-6577178 Msa0871640:intron 35.0%
!! GTCCTTCCTATTGATTTGTT+GGG + chr6_1:6577192-6577211 Msa0871640:intron 35.0%
GAAAGACCCAACAAATCAAT+AGG - chr6_1:6577201-6577220 None:intergenic 35.0%
!!! TCTCCTGACACTAGTTTTTT+AGG + chr6_1:6577377-6577396 Msa0871640:intron 35.0%
! ACTCATAATGGAAACAAGGA+TGG - chr6_1:6577414-6577433 None:intergenic 35.0%
! ATCCTTGTTTCCATTATGAG+TGG + chr6_1:6577413-6577432 Msa0871640:intron 35.0%
! TCCTTGTTTCCATTATGAGT+GGG + chr6_1:6577414-6577433 Msa0871640:intron 35.0%
!!! CTCTTTTCATTGGTGTTAGT+TGG + chr6_1:6577665-6577684 Msa0871640:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr6_1:6577810-6577829 None:intergenic 35.0%
ACAATGAAGAGAGAAAAAGG+AGG - chr6_1:6577872-6577891 None:intergenic 35.0%
!! TTGGTTAATGCAGAGTATTG+AGG - chr6_1:6578604-6578623 None:intergenic 35.0%
! GTGGAAAAGTATGTAAGAGA+AGG + chr6_1:6578841-6578860 Msa0871640:CDS 35.0%
TGGTAACTGAATTTGATCAG+GGG - chr6_1:6578874-6578893 None:intergenic 35.0%
CTTCTTCACCATCAAAACTA+TGG - chr6_1:6578894-6578913 None:intergenic 35.0%
!!! CATAGTTTTGATGGTGAAGA+AGG + chr6_1:6578892-6578911 Msa0871640:CDS 35.0%
ATTGGAATCAAACCAACTGA+AGG + chr6_1:6579067-6579086 Msa0871640:intron 35.0%
TTATGAAAATTGGTCCGAAC+TGG - chr6_1:6579127-6579146 None:intergenic 35.0%
ATGAAGACCTGAAGAAATAC+CGG - chr6_1:6579958-6579977 Msa0871650:three_prime_UTR 35.0%
CTTAGGACTATAAGACAAGA+TGG - chr6_1:6580228-6580247 Msa0871650:three_prime_UTR 35.0%
TCGATTCATGTCTTTGAACA+TGG - chr6_1:6580379-6580398 Msa0871650:three_prime_UTR 35.0%
! AAAGACATGAATCGATTCCA+GGG + chr6_1:6580384-6580403 Msa0871640:intron 35.0%
TTATCACACTCCAAAAACAC+GGG - chr6_1:6580415-6580434 Msa0871650:three_prime_UTR 35.0%
ATCAGTCTAGTCTAATAAGC+AGG + chr6_1:6580642-6580661 Msa0871640:intron 35.0%
ACAAGAATCTGGATATGATC+AGG - chr6_1:6580972-6580991 Msa0871650:intron 35.0%
TCCAGATTCTTGTGTGTATT+TGG + chr6_1:6580979-6580998 Msa0871640:intron 35.0%
ACATAATCATTCTGCTTGCT+TGG - chr6_1:6581351-6581370 Msa0871650:intron 35.0%
AAGCAAGCAGAATGATTATG+TGG + chr6_1:6581350-6581369 Msa0871640:intron 35.0%
!! AACCTGATAACTTTTGGGAA+CGG + chr6_1:6581530-6581549 Msa0871640:intron 35.0%
CAAAATGCCACGAAATTAAG+AGG + chr6_1:6581738-6581757 Msa0871640:intron 35.0%
AAATCAGGAAAGTGAAGGAT+AGG + chr6_1:6581899-6581918 Msa0871640:intron 35.0%
AGATGTGGTTGTAAAATGTC+TGG - chr6_1:6581935-6581954 Msa0871650:intron 35.0%
TTTACACTTCGTTGATGTGT+AGG - chr6_1:6582229-6582248 Msa0871650:intron 35.0%
GGAAGTGAAATTATTGGAGT+GGG - chr6_1:6582318-6582337 Msa0871650:intron 35.0%
AGGAAGTGAAATTATTGGAG+TGG - chr6_1:6582319-6582338 Msa0871650:intron 35.0%
TCTGCAGGAAGTGAAATTAT+TGG - chr6_1:6582324-6582343 Msa0871650:intron 35.0%
!!! TGAAGCTTCTGTACTTTTTC+AGG - chr6_1:6582553-6582572 Msa0871650:CDS 35.0%
!! GCGTTTTTCCTCTTATTTAC+AGG - chr6_1:6582587-6582606 Msa0871650:intron 35.0%
! AATTGTCTGAATGAAGGTGT+AGG - chr6_1:6582633-6582652 Msa0871650:intron 35.0%
! TGAAATTGGGGTTTCTTTTG+AGG + chr6_1:6582812-6582831 Msa0871640:intron 35.0%
TGAAGATGAAAGATAGAGAG+AGG + chr6_1:6583117-6583136 Msa0871640:intron 35.0%
GCTATCTGATCCACAATTAT+AGG - chr6_1:6583399-6583418 Msa0871650:five_prime_UTR 35.0%
! CATCTTCACTTGTCTTTTAG+TGG + chr6_1:6583418-6583437 Msa0871640:intron 35.0%
! TTAGCTTTCATGGAATAGGA+GGG - chr6_1:6583469-6583488 None:intergenic 35.0%
!! TTTAGCTTTCATGGAATAGG+AGG - chr6_1:6583470-6583489 None:intergenic 35.0%
! GAGTTTTTGTGATGTATAGG+TGG + chr6_1:6583513-6583532 Msa0871640:intron 35.0%
!! GGGATACTTCTAAAACAAAG+TGG + chr6_1:6583611-6583630 Msa0871640:intron 35.0%
! CAACTAACCACCATGATTTT+AGG - chr6_1:6583808-6583827 None:intergenic 35.0%
TCACTACATGTTTGATGTGA+CGG - chr6_1:6583848-6583867 None:intergenic 35.0%
GGATGTGATTACCTCATATA+AGG + chr6_1:6583981-6584000 Msa0871640:intron 35.0%
!! ATGAAAGGTACCCTTATATG+AGG - chr6_1:6583995-6584014 None:intergenic 35.0%
ATTTGCATTACAGGATTTCC+TGG + chr6_1:6584195-6584214 Msa0871640:intron 35.0%
GTAACTGTAAGCTACATTCT+AGG + chr6_1:6584228-6584247 Msa0871640:CDS 35.0%
GCATGGTTAACTAAGTTTAC+TGG - chr6_1:6584306-6584325 None:intergenic 35.0%
GACAATAACCTTATTCCAAC+CGG + chr6_1:6584408-6584427 Msa0871640:CDS 35.0%
! ACTGATGAAATTTTTCCGGT+TGG - chr6_1:6584426-6584445 None:intergenic 35.0%
!! TGTGGCTTTAGGAAATCATT+TGG - chr6_1:6584459-6584478 None:intergenic 35.0%
TTCCTAAAGCCACAAATTGT+TGG + chr6_1:6584465-6584484 Msa0871640:CDS 35.0%
ATTCTTGCACCAACAATTTG+TGG - chr6_1:6584477-6584496 None:intergenic 35.0%
GCACTATAAAATTGCAATCC+AGG - chr6_1:6584642-6584661 None:intergenic 35.0%
GTGAAGAATGATAAGGGAAA+AGG + chr6_1:6584669-6584688 Msa0871640:CDS 35.0%
AAGAATGATAAGGGAAAAGG+AGG + chr6_1:6584672-6584691 Msa0871640:CDS 35.0%
AGAATGATAAGGGAAAAGGA+GGG + chr6_1:6584673-6584692 Msa0871640:CDS 35.0%
! TGAAAAAGCATGTGGAACTT+CGG - chr6_1:6584835-6584854 None:intergenic 35.0%
AAAGTCAATGTGGCTGCTTA+TGG - chr6_1:6575212-6575231 None:intergenic 40.0%
ACTTCGAGGGGAAAAAAGAA+AGG - chr6_1:6575235-6575254 None:intergenic 40.0%
AGAGAAGTTTCAACTTCGAG+GGG - chr6_1:6575247-6575266 None:intergenic 40.0%
! CTTCTCTTCTTAGCTGTTTC+TGG + chr6_1:6575353-6575372 Msa0871640:CDS 40.0%
!! GCTGTTTCTGGATTTGTCAA+TGG + chr6_1:6575365-6575384 Msa0871640:CDS 40.0%
CAATGGCTCAATCCATAAGA+AGG + chr6_1:6575382-6575401 Msa0871640:CDS 40.0%
! ACTTTGAAGGTCACTAACTG+GGG + chr6_1:6575452-6575471 Msa0871640:CDS 40.0%
TTAGTCCTACCTGACAAGAA+TGG + chr6_1:6575491-6575510 Msa0871640:CDS 40.0%
GAAGCCACGATACTTCAAAA+TGG + chr6_1:6576075-6576094 Msa0871640:intron 40.0%
!! GGAAAGTATCAGACAGGTAT+CGG - chr6_1:6576132-6576151 None:intergenic 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr6_1:6576212-6576231 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - chr6_1:6576221-6576240 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - chr6_1:6576222-6576241 None:intergenic 40.0%
AATCAAGATACGATACGGCT+GGG - chr6_1:6576607-6576626 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG - chr6_1:6576608-6576627 None:intergenic 40.0%
TATCGTATCCGTATCGTATC+CGG + chr6_1:6576661-6576680 Msa0871640:intron 40.0%
! CCCCAAAGTTGGATATTTTG+TGG - chr6_1:6576701-6576720 None:intergenic 40.0%
TAAAATGTGCACCCCAAAGT+TGG - chr6_1:6576712-6576731 None:intergenic 40.0%
AAGCACACATAGAAGTCTCT+CGG - chr6_1:6577072-6577091 None:intergenic 40.0%
! AGTCACCTTTTTGTTACCTG+TGG + chr6_1:6577118-6577137 Msa0871640:intron 40.0%
! GTCACCTTTTTGTTACCTGT+GGG + chr6_1:6577119-6577138 Msa0871640:intron 40.0%
! TCACCTTTTTGTTACCTGTG+GGG + chr6_1:6577120-6577139 Msa0871640:intron 40.0%
AAACCCCACAGGTAACAAAA+AGG - chr6_1:6577126-6577145 None:intergenic 40.0%
!!! TGATTTTTGGATGGCTTGGT+TGG + chr6_1:6577163-6577182 Msa0871640:intron 40.0%
!!! GATTTTTGGATGGCTTGGTT+GGG + chr6_1:6577164-6577183 Msa0871640:intron 40.0%
!! GGTCCTTCCTATTGATTTGT+TGG + chr6_1:6577191-6577210 Msa0871640:intron 40.0%
GACCCAACAAATCAATAGGA+AGG - chr6_1:6577197-6577216 None:intergenic 40.0%
!! TGATTTGTTGGGTCTTTCTG+AGG + chr6_1:6577203-6577222 Msa0871640:intron 40.0%
!! GATTTGTTGGGTCTTTCTGA+GGG + chr6_1:6577204-6577223 Msa0871640:intron 40.0%
! ATTTGTTGGGTCTTTCTGAG+GGG + chr6_1:6577205-6577224 Msa0871640:intron 40.0%
!! GTTTCCTAGCAGAGAGTATT+AGG + chr6_1:6577236-6577255 Msa0871640:intron 40.0%
TACACCTAATACTCTCTGCT+AGG - chr6_1:6577243-6577262 None:intergenic 40.0%
! ACCCACTCATAATGGAAACA+AGG - chr6_1:6577418-6577437 None:intergenic 40.0%
TTGTTTCCATTATGAGTGGG+TGG + chr6_1:6577417-6577436 Msa0871640:intron 40.0%
TATTGGTCCCAACAGATTGA+TGG - chr6_1:6577448-6577467 None:intergenic 40.0%
CTGTTGGGACCAATAGATTA+CGG + chr6_1:6577453-6577472 Msa0871640:intron 40.0%
TGTTGGGACCAATAGATTAC+GGG + chr6_1:6577454-6577473 Msa0871640:intron 40.0%
AAACTGGAATCCATGCTCAA+AGG - chr6_1:6577500-6577519 None:intergenic 40.0%
TTCTATCTCGTCTTTGGATG+AGG + chr6_1:6577635-6577654 Msa0871640:intron 40.0%
TCTATCTCGTCTTTGGATGA+GGG + chr6_1:6577636-6577655 Msa0871640:intron 40.0%
TGAGAGTAAGCAAGCTTCAA+TGG - chr6_1:6578189-6578208 None:intergenic 40.0%
GGAGCTCAGTTTACTCTAAA+TGG + chr6_1:6578352-6578371 Msa0871640:CDS 40.0%
AGAACATCACTGAATCCTCT+AGG - chr6_1:6578814-6578833 None:intergenic 40.0%
GAGGATTCAGTGATGTTCTT+TGG + chr6_1:6578815-6578834 Msa0871640:CDS 40.0%
! CAGTGATGTTCTTTGGAAAG+TGG + chr6_1:6578822-6578841 Msa0871640:CDS 40.0%
AATCAAACCAACTGAAGGAG+TGG + chr6_1:6579072-6579091 Msa0871640:intron 40.0%
GGTGAAGCAGAATCTGAATT+TGG - chr6_1:6580207-6580226 Msa0871650:three_prime_UTR 40.0%
! CAAAGACATGAATCGATTCC+AGG + chr6_1:6580383-6580402 Msa0871640:intron 40.0%
TATCACACTCCAAAAACACG+GGG - chr6_1:6580414-6580433 Msa0871650:three_prime_UTR 40.0%
ATCTGGATATGATCAGGAGT+CGG - chr6_1:6580966-6580985 Msa0871650:intron 40.0%
GCCAAATACACACAAGAATC+TGG - chr6_1:6580983-6581002 Msa0871650:intron 40.0%
! TCTGATATCAAGTTGCTCCA+TGG - chr6_1:6581086-6581105 Msa0871650:intron 40.0%
CAACTACAACACCAATGGAA+AGG + chr6_1:6581114-6581133 Msa0871640:intron 40.0%
AACCGTTCCCAAAAGTTATC+AGG - chr6_1:6581535-6581554 Msa0871650:intron 40.0%
! GGTTGTAAAATGTCTGGCTT+TGG - chr6_1:6581929-6581948 Msa0871650:intron 40.0%
TGGACACAAATATGCAGCAA+AGG - chr6_1:6581974-6581993 Msa0871650:CDS 40.0%
TGCAGTCTGAAGATTGCATT+AGG - chr6_1:6582011-6582030 Msa0871650:intron 40.0%
! GGTGAGGTTCTATTGTCTTT+TGG - chr6_1:6582259-6582278 Msa0871650:intron 40.0%
AAAGACAATAGAACCTCACC+TGG + chr6_1:6582259-6582278 Msa0871640:intron 40.0%
!!! CTTCTGTACTTTTTCAGGTG+TGG - chr6_1:6582548-6582567 Msa0871650:intron 40.0%
! AATCGGGTTGTTGTATTAGC+TGG - chr6_1:6582849-6582868 Msa0871650:intron 40.0%
! GAGTGGAAACCATTGATTGT+TGG + chr6_1:6583156-6583175 Msa0871640:intron 40.0%
! TGGAAACCATTGATTGTTGG+TGG + chr6_1:6583159-6583178 Msa0871640:intron 40.0%
! AAACCATTGATTGTTGGTGG+CGG + chr6_1:6583162-6583181 Msa0871640:intron 40.0%
! GGATTCATCAGTACTGAAAG+TGG + chr6_1:6583186-6583205 Msa0871640:intron 40.0%
! TTCATCAGTACTGAAAGTGG+AGG + chr6_1:6583189-6583208 Msa0871640:intron 40.0%
! TCATCAGTACTGAAAGTGGA+GGG + chr6_1:6583190-6583209 Msa0871640:intron 40.0%
CACATCCTACATAGACATCA+AGG - chr6_1:6583968-6583987 None:intergenic 40.0%
TGTAGCTTACAGTTACTCTG+AGG - chr6_1:6584224-6584243 None:intergenic 40.0%
AACCATGCTTATTGGAACCT+AGG + chr6_1:6584318-6584337 Msa0871640:CDS 40.0%
TTCCTAGGTTCCAATAAGCA+TGG - chr6_1:6584323-6584342 None:intergenic 40.0%
CTAAAATGTTGCCACTGTTG+TGG - chr6_1:6584347-6584366 None:intergenic 40.0%
CACCAACAATTTGTGGCTTT+AGG - chr6_1:6584470-6584489 None:intergenic 40.0%
AAAGGTTGCAGCTATAGTGA+TGG + chr6_1:6584575-6584594 Msa0871640:CDS 40.0%
AAGCTTAGTACTAATGCTCC+TGG + chr6_1:6584621-6584640 Msa0871640:CDS 40.0%
ATCGTCACGGATCATTCCAA+AGG - chr6_1:6575991-6576010 None:intergenic 45.0%
TATCGGTGCAGAATACGCAT+AGG - chr6_1:6576115-6576134 None:intergenic 45.0%
!! CGTATCGGAAAGTATCAGAC+AGG - chr6_1:6576138-6576157 None:intergenic 45.0%
GATACTTCCCGATACGTATC+AGG + chr6_1:6576211-6576230 Msa0871640:intron 45.0%
GGAAATATCGGAGCAGGTAT+CGG - chr6_1:6576261-6576280 None:intergenic 45.0%
!!! AGCACTGATGGTGCTCTTTT+TGG + chr6_1:6576402-6576421 Msa0871640:intron 45.0%
!! GCACTGATGGTGCTCTTTTT+GGG + chr6_1:6576403-6576422 Msa0871640:intron 45.0%
ATGTGCTACGAGCTTATGAC+TGG + chr6_1:6576493-6576512 Msa0871640:intron 45.0%
ATCGTATCCGTATCGTATCC+GGG + chr6_1:6576662-6576681 Msa0871640:intron 45.0%
! TGTGTTGATCTGACTCTCTG+TGG + chr6_1:6577267-6577286 Msa0871640:intron 45.0%
GACGCTGGATGTAGAACAAT+TGG + chr6_1:6577336-6577355 Msa0871640:intron 45.0%
TTTCCATTATGAGTGGGTGG+TGG + chr6_1:6577420-6577439 Msa0871640:intron 45.0%
TGGTGGAACCATCAATCTGT+TGG + chr6_1:6577437-6577456 Msa0871640:intron 45.0%
GGTGGAACCATCAATCTGTT+GGG + chr6_1:6577438-6577457 Msa0871640:intron 45.0%
GTTGGGACCAATAGATTACG+GGG + chr6_1:6577455-6577474 Msa0871640:intron 45.0%
TTGGGACCAATAGATTACGG+GGG + chr6_1:6577456-6577475 Msa0871640:intron 45.0%
GTATATGCTCTTGAGGGAGT+AGG + chr6_1:6577534-6577553 Msa0871640:intron 45.0%
AAAAACAAAGCCCACCTCTC+GGG - chr6_1:6577572-6577591 None:intergenic 45.0%
CAAAAACAAAGCCCACCTCT+CGG - chr6_1:6577573-6577592 None:intergenic 45.0%
!!! GAGAGGTGGGCTTTGTTTTT+GGG + chr6_1:6577572-6577591 Msa0871640:intron 45.0%
! GGGTGTTTCTATCTCGTCTT+TGG + chr6_1:6577629-6577648 Msa0871640:intron 45.0%
AGAGAGAAAAAGGAGGAGAG+AGG - chr6_1:6577865-6577884 None:intergenic 45.0%
GAGTCGTGTGATAGATGTGA+TGG - chr6_1:6578092-6578111 None:intergenic 45.0%
!! TCATACTTTGGAGCAACCGT+TGG + chr6_1:6578307-6578326 Msa0871640:CDS 45.0%
TCTGTTAGCAACCCTACCAA+CGG - chr6_1:6578326-6578345 None:intergenic 45.0%
GGTAGGGTTGCTAACAGAAT+TGG + chr6_1:6578328-6578347 Msa0871640:CDS 45.0%
AGGGTTGCTAACAGAATTGG+AGG + chr6_1:6578331-6578350 Msa0871640:CDS 45.0%
GAAGGAAGCAACACTCTTCA+TGG + chr6_1:6578400-6578419 Msa0871640:CDS 45.0%
CTTTACTTAGGTGGACCTAG+AGG + chr6_1:6578796-6578815 Msa0871640:intron 45.0%
AAAGAGACCACTCCTTCAGT+TGG - chr6_1:6579082-6579101 None:intergenic 45.0%
ACTAGTTGAATCGGCCAGTT+CGG + chr6_1:6579110-6579129 Msa0871640:intron 45.0%
AATCCGCAGCTCAAAAACAC+GGG - chr6_1:6579668-6579687 None:intergenic 45.0%
CAATCCGCAGCTCAAAAACA+CGG - chr6_1:6579669-6579688 None:intergenic 45.0%
CTTCTATAGCTACGACTTGC+CGG + chr6_1:6579936-6579955 Msa0871640:intron 45.0%
AATCCCTCCTCCAGAAACAT+GGG - chr6_1:6580307-6580326 Msa0871650:three_prime_UTR 45.0%
TAATCCCTCCTCCAGAAACA+TGG - chr6_1:6580308-6580327 Msa0871650:three_prime_UTR 45.0%
TCTGGATATGATCAGGAGTC+GGG - chr6_1:6580965-6580984 Msa0871650:intron 45.0%
AGGTGTGCCTCTTAATTTCG+TGG - chr6_1:6581748-6581767 Msa0871650:intron 45.0%
TGAGGGCTACTTACATATCC+AGG - chr6_1:6581830-6581849 Msa0871650:CDS 45.0%
TCAAGGTTCTGTTCATGTCC+AGG - chr6_1:6582280-6582299 Msa0871650:CDS 45.0%
GGTTGTGTTCTCACTTCTCA+AGG - chr6_1:6582297-6582316 Msa0871650:CDS 45.0%
! GCTGATTTCATCAACCCACA+AGG - chr6_1:6582665-6582684 Msa0871650:intron 45.0%
GAGAGGAACAAACGTTGAGT+TGG + chr6_1:6583134-6583153 Msa0871640:intron 45.0%
!! GAACAAACGTTGAGTTGGAG+TGG + chr6_1:6583139-6583158 Msa0871640:intron 45.0%
GAGAGAGTTGCCTTCTAAAC+TGG + chr6_1:6583269-6583288 Msa0871640:intron 45.0%
GAGAGAGAGATGTGAAACTC+TGG + chr6_1:6583312-6583331 Msa0871640:intron 45.0%
AGATGTGAAACTCTGGATCG+CGG + chr6_1:6583319-6583338 Msa0871640:intron 45.0%
!! ATATGTTTGGATTGGCGGCT+AGG + chr6_1:6583728-6583747 Msa0871640:intron 45.0%
GGTACACTGTTCGAGTAACA+TGG + chr6_1:6583938-6583957 Msa0871640:intron 45.0%
GCTGTCCTTGATGTCTATGT+AGG + chr6_1:6583960-6583979 Msa0871640:intron 45.0%
AACCTAGGAAACCACAACAG+TGG + chr6_1:6584333-6584352 Msa0871640:CDS 45.0%
ACCACGTTCAGCACTTTGTT+TGG + chr6_1:6584707-6584726 Msa0871640:CDS 45.0%
!! TCCAAACAAAGTGCTGAACG+TGG - chr6_1:6584711-6584730 None:intergenic 45.0%
! AAAAGCATGTGGAACTTCGG+TGG - chr6_1:6584832-6584851 None:intergenic 45.0%
!! TAAAAATAAAATTTAATCTT+CGG - chr6_1:6576175-6576194 None:intergenic 5.0%
!!! ATTAATACTTATATTTTTTT+TGG - chr6_1:6579351-6579370 None:intergenic 5.0%
!! AAAATAAAATATAGTATTAA+TGG + chr6_1:6579408-6579427 Msa0871640:intron 5.0%
!! TTAAATATGAATTATAAAAA+TGG - chr6_1:6579615-6579634 None:intergenic 5.0%
GTCACGGATCATTCCAAAGG+AGG - chr6_1:6575988-6576007 None:intergenic 50.0%
TGTGAAGCCCGGATACGATA+CGG - chr6_1:6576672-6576691 None:intergenic 50.0%
TGTGGTGCATATGTGAAGCC+CGG - chr6_1:6576683-6576702 None:intergenic 50.0%
TAGGGTCATGCTAACGTGCT+TGG - chr6_1:6576767-6576786 None:intergenic 50.0%
TGATCTGACTCTCTGTGGTG+TGG + chr6_1:6577272-6577291 Msa0871640:intron 50.0%
TCTCTGTGGTGTGGTCTATC+TGG + chr6_1:6577281-6577300 Msa0871640:intron 50.0%
CTGGTCTGGTCGTAATGATC+TGG + chr6_1:6577300-6577319 Msa0871640:intron 50.0%
GTTCCACCACCCACTCATAA+TGG - chr6_1:6577426-6577445 None:intergenic 50.0%
ACTCCTCCCCCGTAATCTAT+TGG - chr6_1:6577465-6577484 None:intergenic 50.0%
TTATTCCATCTCCCGAGAGG+TGG + chr6_1:6577558-6577577 Msa0871640:intron 50.0%
TATTCCATCTCCCGAGAGGT+GGG + chr6_1:6577559-6577578 Msa0871640:intron 50.0%
!!! CGAGAGGTGGGCTTTGTTTT+TGG + chr6_1:6577571-6577590 Msa0871640:intron 50.0%
!!! AGGTGGGCTTTGTTTTTGGG+TGG + chr6_1:6577575-6577594 Msa0871640:intron 50.0%
!!! TGGGCTTTGTTTTTGGGTGG+AGG + chr6_1:6577578-6577597 Msa0871640:intron 50.0%
!!! GGGCTTTGTTTTTGGGTGGA+GGG + chr6_1:6577579-6577598 Msa0871640:intron 50.0%
! TCCCTTGCTTGCCTTTTAGC+CGG + chr6_1:6577602-6577621 Msa0871640:intron 50.0%
ACCGGCTAAAAGGCAAGCAA+GGG - chr6_1:6577606-6577625 None:intergenic 50.0%
GAGATAGAAACACCCCACAC+CGG - chr6_1:6577624-6577643 None:intergenic 50.0%
!! ACTTTGGAGCAACCGTTGGT+AGG + chr6_1:6578311-6578330 Msa0871640:CDS 50.0%
!! CTTTGGAGCAACCGTTGGTA+GGG + chr6_1:6578312-6578331 Msa0871640:CDS 50.0%
ATCCGCAGCTCAAAAACACG+GGG - chr6_1:6579667-6579686 None:intergenic 50.0%
CGACTTGCCGGTATTTCTTC+AGG + chr6_1:6579948-6579967 Msa0871640:intron 50.0%
ATCCCTCCTCCAGAAACATG+GGG - chr6_1:6580306-6580325 Msa0871650:three_prime_UTR 50.0%
GGAGCGAGATTGCCATTCAT+GGG - chr6_1:6580535-6580554 Msa0871650:CDS 50.0%
GGAACGGTTCCACCTATCAT+AGG + chr6_1:6581546-6581565 Msa0871640:intron 50.0%
GTTCTGTTCATGTCCAGGTG+AGG - chr6_1:6582275-6582294 Msa0871650:intron 50.0%
! CAGTACTGAAAGTGGAGGGT+CGG + chr6_1:6583194-6583213 Msa0871640:intron 50.0%
!! ACAGTTACTCTGAGGTCACC+AGG - chr6_1:6584216-6584235 None:intergenic 50.0%
TGCCACTGTTGTGGTTTCCT+AGG - chr6_1:6584338-6584357 None:intergenic 50.0%
!! ATCGGAGCAGGTATCGGTGA+AGG - chr6_1:6576255-6576274 None:intergenic 55.0%
TTACCTGTGGGGTTTCGTCG+AGG + chr6_1:6577131-6577150 Msa0871640:intron 55.0%
AAACCTCGACGAAACCCCAC+AGG - chr6_1:6577137-6577156 None:intergenic 55.0%
TGTGGGGTTTCGTCGAGGTT+TGG + chr6_1:6577136-6577155 Msa0871640:intron 55.0%
!! TGGATGGCTTGGTTGGGAGT+TGG + chr6_1:6577170-6577189 Msa0871640:intron 55.0%
GTGGTGTGGTCTATCTGGTC+TGG + chr6_1:6577286-6577305 Msa0871640:intron 55.0%
GGTGTTCTCTGCTATGACGC+TGG + chr6_1:6577321-6577340 Msa0871640:intron 55.0%
GGACCAATAGATTACGGGGG+AGG + chr6_1:6577459-6577478 Msa0871640:intron 55.0%
! TACGGGGGAGGAGTTTTGCT+TGG + chr6_1:6577471-6577490 Msa0871640:intron 55.0%
! ACGGGGGAGGAGTTTTGCTT+GGG + chr6_1:6577472-6577491 Msa0871640:intron 55.0%
TGCTTGGGTGCCTTTGAGCA+TGG + chr6_1:6577487-6577506 Msa0871640:intron 55.0%
GGCTTATTCCATCTCCCGAG+AGG + chr6_1:6577555-6577574 Msa0871640:intron 55.0%
! CACCGGCTAAAAGGCAAGCA+AGG - chr6_1:6577607-6577626 None:intergenic 55.0%
! TGCTTGCCTTTTAGCCGGTG+TGG + chr6_1:6577607-6577626 Msa0871640:intron 55.0%
! GCTTGCCTTTTAGCCGGTGT+GGG + chr6_1:6577608-6577627 Msa0871640:intron 55.0%
! CTTGCCTTTTAGCCGGTGTG+GGG + chr6_1:6577609-6577628 Msa0871640:intron 55.0%
! AACACCCCACACCGGCTAAA+AGG - chr6_1:6577616-6577635 None:intergenic 55.0%
GATTACACCCGTGCAACGCA+CGG + chr6_1:6579200-6579219 Msa0871640:intron 55.0%
ATTACACCCGTGCAACGCAC+GGG + chr6_1:6579201-6579220 Msa0871640:intron 55.0%
TCCGCAGCTCAAAAACACGG+GGG - chr6_1:6579666-6579685 None:intergenic 55.0%
CCAGAAACATGGGGGCTTAC+AGG - chr6_1:6580297-6580316 Msa0871650:three_prime_UTR 55.0%
CCTGTAAGCCCCCATGTTTC+TGG + chr6_1:6580294-6580313 Msa0871640:intron 55.0%
!! GTAAGCCCCCATGTTTCTGG+AGG + chr6_1:6580297-6580316 Msa0871640:intron 55.0%
TCCCTCCTCCAGAAACATGG+GGG - chr6_1:6580305-6580324 Msa0871650:three_prime_UTR 55.0%
! CAAAAACACGGGGTACTCCC+TGG - chr6_1:6580404-6580423 Msa0871650:three_prime_UTR 55.0%
!!! CAGGGAGTACCCCGTGTTTT+TGG + chr6_1:6580402-6580421 Msa0871640:intron 55.0%
GGGAGCGAGATTGCCATTCA+TGG - chr6_1:6580536-6580555 Msa0871650:CDS 55.0%
CCACCGCCACCAACAATCAA+TGG - chr6_1:6583168-6583187 Msa0871650:CDS 55.0%
!! CCATTGATTGTTGGTGGCGG+TGG + chr6_1:6583165-6583184 Msa0871640:intron 55.0%
AAGTGGAGGGTCGGTTGCAT+CGG + chr6_1:6583203-6583222 Msa0871640:intron 55.0%
! TTGCATCGGCGGCGCAAATA+TGG + chr6_1:6583217-6583236 Msa0871640:intron 55.0%
AAGAGAGAGGAGGAGGGGAA+AGG + chr6_1:6583342-6583361 Msa0871640:intron 55.0%
AAAGCCCACCTCTCGGGAGA+TGG - chr6_1:6577566-6577585 None:intergenic 60.0%
TTACACCCGTGCAACGCACG+GGG + chr6_1:6579202-6579221 Msa0871640:intron 60.0%
TTTCTCCCCCGTGCGTTGCA+CGG - chr6_1:6579211-6579230 None:intergenic 60.0%
CCGCAGCTCAAAAACACGGG+GGG - chr6_1:6579665-6579684 None:intergenic 60.0%
!! CCCCCCGTGTTTTTGAGCTG+CGG + chr6_1:6579662-6579681 Msa0871640:intron 60.0%
!! AGCCCCCATGTTTCTGGAGG+AGG + chr6_1:6580300-6580319 Msa0871640:intron 60.0%
!! GCCCCCATGTTTCTGGAGGA+GGG + chr6_1:6580301-6580320 Msa0871640:intron 60.0%
CGGCGGCGCAAATATGGTGT+CGG + chr6_1:6583223-6583242 Msa0871640:intron 60.0%
CTCTGGATCGCGGAAGAGAG+AGG + chr6_1:6583329-6583348 Msa0871640:intron 60.0%
TGGATCGCGGAAGAGAGAGG+AGG + chr6_1:6583332-6583351 Msa0871640:intron 60.0%
ATCGCGGAAGAGAGAGGAGG+AGG + chr6_1:6583335-6583354 Msa0871640:intron 60.0%
TCGCGGAAGAGAGAGGAGGA+GGG + chr6_1:6583336-6583355 Msa0871640:intron 60.0%
TACACCCGTGCAACGCACGG+GGG + chr6_1:6579203-6579222 Msa0871640:intron 65.0%
TTCTCCCCCGTGCGTTGCAC+GGG - chr6_1:6579210-6579229 None:intergenic 65.0%
TGGAGGGTCGGTTGCATCGG+CGG + chr6_1:6583206-6583225 Msa0871640:intron 65.0%
CGCGGAAGAGAGAGGAGGAG+GGG + chr6_1:6583337-6583356 Msa0871640:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6575130 6584961 6575130 ID=Msa0871640;Name=Msa0871640
chr6_1 mRNA 6575130 6584961 6575130 ID=Msa0871640-mRNA-1;Parent=Msa0871640;Name=Msa0871640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193|1|1|1|0.75|0.6|5|98|375
chr6_1 exon 6575130 6575512 6575130 ID=Msa0871640-mRNA-1:exon:2059;Parent=Msa0871640-mRNA-1
chr6_1 exon 6575647 6575696 6575647 ID=Msa0871640-mRNA-1:exon:2060;Parent=Msa0871640-mRNA-1
chr6_1 exon 6578298 6578421 6578298 ID=Msa0871640-mRNA-1:exon:2061;Parent=Msa0871640-mRNA-1
chr6_1 exon 6578806 6578913 6578806 ID=Msa0871640-mRNA-1:exon:2062;Parent=Msa0871640-mRNA-1
chr6_1 exon 6584208 6584961 6584208 ID=Msa0871640-mRNA-1:exon:2063;Parent=Msa0871640-mRNA-1
chr6_1 five_prime_UTR 6575130 6575322 6575130 ID=Msa0871640-mRNA-1:five_prime_utr;Parent=Msa0871640-mRNA-1
chr6_1 CDS 6575323 6575512 6575323 ID=Msa0871640-mRNA-1:cds;Parent=Msa0871640-mRNA-1
chr6_1 CDS 6575647 6575696 6575647 ID=Msa0871640-mRNA-1:cds;Parent=Msa0871640-mRNA-1
chr6_1 CDS 6578298 6578421 6578298 ID=Msa0871640-mRNA-1:cds;Parent=Msa0871640-mRNA-1
chr6_1 CDS 6578806 6578913 6578806 ID=Msa0871640-mRNA-1:cds;Parent=Msa0871640-mRNA-1
chr6_1 CDS 6584208 6584863 6584208 ID=Msa0871640-mRNA-1:cds;Parent=Msa0871640-mRNA-1
chr6_1 three_prime_UTR 6584864 6584961 6584864 ID=Msa0871640-mRNA-1:three_prime_utr;Parent=Msa0871640-mRNA-1
Gene Sequence

>Msa0871640

ATGATGACCAAGATATTTGTGCTACTATGTCTTCTCTTCTTAGCTGTTTCTGGATTTGTCAATGGCTCAATCCATAAGAAGGAGAAGAATGATGATATTAAATTGTTTGAGCTCAAGAAAGGTGATCTTACTTTGAAGGTCACTAACTGGGGTGCTACACTTGTATCATTAGTCCTACCTGACAAGAATGGAAAGTTAGGTGATATTGTTCTTGGATATGATACTCCCGAAGCATATACTAATGATTCATCATACTTTGGAGCAACCGTTGGTAGGGTTGCTAACAGAATTGGAGGAGCTCAGTTTACTCTAAATGGAATCCATTACAAATTAATTGCTAATGAAGGAAGCAACACTCTTCATGGTGGACCTAGAGGATTCAGTGATGTTCTTTGGAAAGTGGAAAAGTATGTAAGAGAAGGTGATCAACCCCTGATCAAATTCAGTTACCATAGTTTTGATGGTGAAGAAGGATTTCCTGGTGACCTCAGAGTAACTGTAAGCTACATTCTAGGAAAAAATTCCCTAACCATAATTATGCAAGCAAAAGCTCTTAACAAACCTACACCAGTAAACTTAGTTAACCATGCTTATTGGAACCTAGGAAACCACAACAGTGGCAACATTTTAGATGAAGTTGTTCAAATTTTTGGATCAAAATTCACACCTTTTGACAATAACCTTATTCCAACCGGAAAAATTTCATCAGTCAAAGGAACACCAAATGATTTCCTAAAGCCACAAATTGTTGGTGCAAGAATTAATCAATTACCAAAAACTAATGGTTATAACGTTAATTATGTGCTTAATAAAGGAAAATTAGAGAACAAAGAAGGATTAAAGGTTGCAGCTATAGTGATGGATAAGAAATCAGGGAGAGTTATGAAGCTTAGTACTAATGCTCCTGGATTGCAATTTTATAGTGCAAATTTTGTGAAGAATGATAAGGGAAAAGGAGGGTTTGTTTATCAACCACGTTCAGCACTTTGTTTGGAGAGTCAAGCTTTTCCTGATTCTGTTAATCATCCAAATTTTCCTTCAACTATTGTTACAAAAGAAAAGCCTTATAAGCATGTTATGTTGTTGAAGTTTTCCACCGAAGTTCCACATGCTTTTTCACAATTCTAA
Protein sequence

>Msa0871640

MMTKIFVLLCLLFLAVSGFVNGSIHKKEKNDDIKLFELKKGDLTLKVTNWGATLVSLVLPDKNGKLGDIVLGYDTPEAYTNDSSYFGATVGRVANRIGGAQFTLNGIHYKLIANEGSNTLHGGPRGFSDVLWKVEKYVREGDQPLIKFSYHSFDGEEGFPGDLRVTVSYILGKNSLTIIMQAKALNKPTPVNLVNHAYWNLGNHNSGNILDEVVQIFGSKFTPFDNNLIPTGKISSVKGTPNDFLKPQIVGARINQLPKTNGYNVNYVLNKGKLENKEGLKVAAIVMDKKSGRVMKLSTNAPGLQFYSANFVKNDKGKGGFVYQPRSALCLESQAFPDSVNHPNFPSTIVTKEKPYKHVMLLKFSTEVPHAFSQF*