Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904960 | KEH24988.1 | 93.766 | 385 | 13 | 2 | 2 | 385 | 1 | 375 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904960 | sp|Q5EA79|GALM_BOVIN | 40.988 | 344 | 180 | 8 | 33 | 375 | 19 | 340 | 2.78e-78 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0871640 | Msa0904960 | 0.818443 | 1.954539e-52 | -8.615850e-47 |
| Msa0904960 | Msa0936960 | 0.818439 | 1.959312e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904960 | MtrunA17_Chr6g0452971 | 93.506 | 385 | 14 | 2 | 2 | 385 | 1 | 375 | 0.0 | 721 |
| Msa0904960 | MtrunA17_Chr6g0452991 | 91.429 | 385 | 22 | 2 | 2 | 385 | 1 | 375 | 0.0 | 708 |
| Msa0904960 | MtrunA17_Chr7g0217021 | 68.966 | 377 | 99 | 4 | 2 | 377 | 1 | 360 | 0.0 | 524 |
| Msa0904960 | MtrunA17_Chr4g0060521 | 50.997 | 351 | 153 | 5 | 25 | 374 | 23 | 355 | 1.27e-118 | 348 |
| Msa0904960 | MtrunA17_Chr6g0478501 | 47.443 | 352 | 168 | 6 | 28 | 377 | 3 | 339 | 1.97e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904960 | AT3G47800.1 | 50.538 | 372 | 152 | 8 | 5 | 375 | 16 | 356 | 7.19e-122 | 357 |
| Msa0904960 | AT5G15140.1 | 54.070 | 344 | 141 | 6 | 33 | 375 | 160 | 487 | 1.84e-120 | 358 |
| Msa0904960 | AT3G17940.1 | 46.377 | 345 | 170 | 5 | 34 | 376 | 10 | 341 | 1.00e-104 | 312 |
| Msa0904960 | AT3G01260.1 | 41.570 | 344 | 161 | 9 | 33 | 375 | 119 | 423 | 6.07e-74 | 236 |
Find 77 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTCTTAGCTGTTTC+TGG | 0.037891 | 6_2:+2711233 | Msa0904960:CDS |
| CATCATTCTTCTCCTTCTTA+TGG | 0.188818 | 6_2:-2711274 | None:intergenic |
| ACTTAGTTAACCATGCTTAT+TGG | 0.207248 | 6_2:+2715840 | Msa0904960:CDS |
| AGAGAACAAAGAAGGATTAA+AGG | 0.218075 | 6_2:+2716087 | Msa0904960:CDS |
| AACAACATAACATGCTTATA+AGG | 0.235997 | 6_2:-2716328 | None:intergenic |
| GGAGCTCAGTTTACTCTAAA+TGG | 0.254147 | 6_2:+2714251 | Msa0904960:CDS |
| AAAACTTTCCAGTTGGAATA+AGG | 0.255931 | 6_2:-2715946 | None:intergenic |
| ACAATAGTTGAAGGAAAATT+AGG | 0.263993 | 6_2:-2716292 | None:intergenic |
| TTGCTTGCATAATTATGGTT+AGG | 0.268349 | 6_2:-2715790 | None:intergenic |
| GAGGATTCAGTGATGTTCTT+TGG | 0.270041 | 6_2:+2714740 | Msa0904960:CDS |
| GTTAATTATGTGCTCAATAA+AGG | 0.305218 | 6_2:+2716058 | Msa0904960:CDS |
| ACCACGTTCTGCACTTTGTT+TGG | 0.307995 | 6_2:+2716237 | Msa0904960:CDS |
| CACCAACAATTTGTGGCTTT+AGG | 0.321454 | 6_2:-2715997 | None:intergenic |
| TAATTTGTTTCAGGAAAGTT+AGG | 0.323657 | 6_2:+2711529 | Msa0904960:intron |
| GTAACAGTGAGCTACATTCT+AGG | 0.335336 | 6_2:+2715758 | Msa0904960:CDS |
| GACAATAACCTTATTCCAAC+TGG | 0.341523 | 6_2:+2715938 | Msa0904960:CDS |
| TTACTTTGAAGGTCACTAAC+TGG | 0.341785 | 6_2:+2711330 | Msa0904960:CDS |
| AAGTTAGGTGATATTGTTCT+TGG | 0.341881 | 6_2:+2711544 | Msa0904960:CDS |
| TTAGGATGATTAACAGAATC+AGG | 0.363742 | 6_2:-2716274 | None:intergenic |
| TGCTTGCATAATTATGGTTA+GGG | 0.367615 | 6_2:-2715789 | None:intergenic |
| GCTGTTTCTGGATTTGTCAA+TGG | 0.379680 | 6_2:+2711245 | Msa0904960:CDS |
| GAAGGAAACAACACTCTTCA+TGG | 0.387877 | 6_2:+2714299 | Msa0904960:CDS |
| CATTAGCAATTAATTTGTAA+TGG | 0.396328 | 6_2:-2714277 | None:intergenic |
| CTTCTTCACCATCAAAACTA+TGG | 0.396435 | 6_2:-2714816 | None:intergenic |
| CAGAATGATTCATCATACTT+TGG | 0.398226 | 6_2:+2714194 | Msa0904960:intron |
| GAAAGGTGATCTTACTTTGA+AGG | 0.398453 | 6_2:+2711319 | Msa0904960:CDS |
| TTCCTAAAGCCACAAATTGT+TGG | 0.401602 | 6_2:+2715995 | Msa0904960:CDS |
| ATTCTTGCACCAACAATTTG+TGG | 0.406236 | 6_2:-2716004 | None:intergenic |
| TATGGTAACTGAATTTGATC+AGG | 0.411930 | 6_2:-2714798 | None:intergenic |
| GGTAGGGTTGCTAACAGAAT+TGG | 0.416927 | 6_2:+2714227 | Msa0904960:CDS |
| TGTGGCTTTAGGAAATCATT+TGG | 0.419999 | 6_2:-2715986 | None:intergenic |
| ATTTGCATTTCAGGATTTCC+TGG | 0.420086 | 6_2:+2715725 | Msa0904960:intron |
| TACAAATTAATTGCTAATGA+AGG | 0.427010 | 6_2:+2714281 | Msa0904960:CDS |
| GGAATAAGGTTATTGTCAAA+AGG | 0.433564 | 6_2:-2715932 | None:intergenic |
| TGACTTACAGTATATGCTTC+GGG | 0.448080 | 6_2:-2711577 | None:intergenic |
| ATAGTTATGGATAAGAAATC+AGG | 0.449623 | 6_2:+2716118 | Msa0904960:CDS |
| TGTAGCTCACTGTTACTTTG+AGG | 0.450175 | 6_2:-2715751 | None:intergenic |
| AAAGGTTGCAGCTATAGTTA+TGG | 0.450492 | 6_2:+2716105 | Msa0904960:CDS |
| GTGAAGAATGATAAGGGAAA+AGG | 0.455139 | 6_2:+2716199 | Msa0904960:CDS |
| CAGTGATGTTCTTTGGAAAG+TGG | 0.458791 | 6_2:+2714747 | Msa0904960:CDS |
| ATGACTTACAGTATATGCTT+CGG | 0.470863 | 6_2:-2711578 | None:intergenic |
| CTTTGGAGCAACCGTTGGTA+GGG | 0.471024 | 6_2:+2714211 | Msa0904960:CDS |
| ACATAGTAGCACAAATATCT+TGG | 0.474127 | 6_2:-2711210 | None:intergenic |
| CTAAAATGTTGCCACGGTTG+TGG | 0.479271 | 6_2:-2715874 | None:intergenic |
| TACTTTGAAGGTCACTAACT+GGG | 0.480765 | 6_2:+2711331 | Msa0904960:CDS |
| TGCCACGGTTGTGGTTTCCT+AGG | 0.485550 | 6_2:-2715865 | None:intergenic |
| AAATTGTTTGAGCTCAAGAA+AGG | 0.494592 | 6_2:+2711302 | Msa0904960:CDS |
| ATGTATTTACCATTCTTGTC+AGG | 0.495301 | 6_2:-2711380 | None:intergenic |
| GGAAAATTAGAGAACAAAGA+AGG | 0.503162 | 6_2:+2716079 | Msa0904960:CDS |
| ACTGATGAAAACTTTCCAGT+TGG | 0.509297 | 6_2:-2715953 | None:intergenic |
| CAATGGCTCAATCCATAAGA+AGG | 0.524105 | 6_2:+2711262 | Msa0904960:CDS |
| GCACTATAAAATTGCAAACC+TGG | 0.530980 | 6_2:-2716169 | None:intergenic |
| AAGAATGATAAGGGAAAAGG+AGG | 0.537569 | 6_2:+2716202 | Msa0904960:CDS |
| ACTTTGGAGCAACCGTTGGT+AGG | 0.537610 | 6_2:+2714210 | Msa0904960:CDS |
| TTCCTAGGTTCCAATAAGCA+TGG | 0.549621 | 6_2:-2715850 | None:intergenic |
| ATGGTAACTGAATTTGATCA+GGG | 0.552134 | 6_2:-2714797 | None:intergenic |
| AACCATGCTTATTGGAACCT+AGG | 0.554831 | 6_2:+2715848 | Msa0904960:CDS |
| GTGGAAAAGTATGTAAGAGA+AGG | 0.556236 | 6_2:+2714766 | Msa0904960:CDS |
| AGGGTTGCTAACAGAATTGG+AGG | 0.557121 | 6_2:+2714230 | Msa0904960:CDS |
| TTAACTAAGTTGACTGGTGT+AGG | 0.558469 | 6_2:-2715827 | None:intergenic |
| AGAACATCACTGAATCCTCT+AGG | 0.566952 | 6_2:-2714736 | None:intergenic |
| TTAGTCCTACCTGACAAGAA+TGG | 0.570956 | 6_2:+2711371 | Msa0904960:CDS |
| GCATGGTTAACTAAGTTGAC+TGG | 0.576163 | 6_2:-2715833 | None:intergenic |
| ACTGTTACTTTGAGGTCACC+AGG | 0.582122 | 6_2:-2715743 | None:intergenic |
| TCATACTTTGGAGCAACCGT+TGG | 0.584842 | 6_2:+2714206 | Msa0904960:CDS |
| ATTTACCATTCTTGTCAGGT+AGG | 0.589638 | 6_2:-2711376 | None:intergenic |
| ATGTATTTAGAAACAGAGGA+AGG | 0.592980 | 6_2:-2714342 | None:intergenic |
| AAGCTTAGTACTAATGCACC+AGG | 0.595968 | 6_2:+2716151 | Msa0904960:CDS |
| TGTATTTAGAAACAGAGGAA+GGG | 0.611232 | 6_2:-2714341 | None:intergenic |
| CTTCATCTAAAATGTTGCCA+CGG | 0.632725 | 6_2:-2715880 | None:intergenic |
| TCTGTTAGCAACCCTACCAA+CGG | 0.641516 | 6_2:-2714222 | None:intergenic |
| ACTTTGAAGGTCACTAACTG+GGG | 0.657814 | 6_2:+2711332 | Msa0904960:CDS |
| TCCAAACAAAGTGCAGAACG+TGG | 0.683480 | 6_2:-2716238 | None:intergenic |
| CTTTACTTAGGTGGACCTAG+AGG | 0.691401 | 6_2:+2714721 | Msa0904960:intron |
| TGGTAACTGAATTTGATCAG+GGG | 0.692121 | 6_2:-2714796 | None:intergenic |
| AGAATGATAAGGGAAAAGGA+GGG | 0.703237 | 6_2:+2716203 | Msa0904960:CDS |
| AACCTAGGAAACCACAACCG+TGG | 0.725036 | 6_2:+2715863 | Msa0904960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAGTTAACATTAATT+GGG | - | chr6_2:2712176-2712195 | None:intergenic | 10.0% |
| !!! | TTATTTTAGTTAACATTAAT+TGG | - | chr6_2:2712177-2712196 | None:intergenic | 10.0% |
| !! | ATATATTTGCATATTAAAAA+TGG | + | chr6_2:2712426-2712445 | Msa0904960:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAACAAC+TGG | - | chr6_2:2713602-2713621 | None:intergenic | 10.0% |
| !! | TGAATTATTATTAATATTGT+TGG | - | chr6_2:2714522-2714541 | None:intergenic | 10.0% |
| !! | TAAAATGTAATACATATTTC+AGG | - | chr6_2:2711618-2711637 | None:intergenic | 15.0% |
| !!! | AAATTTAGATATTTGTTGTA+GGG | - | chr6_2:2712871-2712890 | None:intergenic | 15.0% |
| !!! | GTAAATAATGTTTTTTTAGA+GGG | + | chr6_2:2712954-2712973 | Msa0904960:intron | 15.0% |
| !!! | TAAATAATGTTTTTTTAGAG+GGG | + | chr6_2:2712955-2712974 | Msa0904960:intron | 15.0% |
| !! | TTAAGTTACTAAATTATTGA+GGG | - | chr6_2:2712983-2713002 | None:intergenic | 15.0% |
| !! | ATTAAGTTACTAAATTATTG+AGG | - | chr6_2:2712984-2713003 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAGAAAACAATG+TGG | + | chr6_2:2713070-2713089 | Msa0904960:intron | 15.0% |
| !!! | ATTGTTGTTCTTTTTTATAA+TGG | - | chr6_2:2713882-2713901 | None:intergenic | 15.0% |
| !!! | TATCATTGACATTTTTTTTA+AGG | - | chr6_2:2713919-2713938 | None:intergenic | 15.0% |
| !! | ATTGTAATCATAGTAAAATT+TGG | - | chr6_2:2714445-2714464 | None:intergenic | 15.0% |
| !!! | ATATAAAGCAAAATTTTTTG+TGG | - | chr6_2:2714555-2714574 | None:intergenic | 15.0% |
| !!! | CTTAATATTTTACTTTACTT+AGG | + | chr6_2:2714709-2714728 | Msa0904960:intron | 15.0% |
| !! | AATCAATTACAAAAAACTAA+TGG | + | chr6_2:2716028-2716047 | Msa0904960:CDS | 15.0% |
| !! | ATCAATAAAGCAACAATTAA+TGG | - | chr6_2:2711447-2711466 | None:intergenic | 20.0% |
| !! | TAACATTAATTGGGAAATTT+CGG | - | chr6_2:2712167-2712186 | None:intergenic | 20.0% |
| !! | TTAAAAATCAAGATACGATA+CGG | - | chr6_2:2712504-2712523 | None:intergenic | 20.0% |
| !!! | CAAATTTAGATATTTGTTGT+AGG | - | chr6_2:2712872-2712891 | None:intergenic | 20.0% |
| !! | CTACAACAAATATCTAAATT+TGG | + | chr6_2:2712870-2712889 | Msa0904960:intron | 20.0% |
| !!! | AACGAATAAACCTTTTTTTA+GGG | - | chr6_2:2712900-2712919 | None:intergenic | 20.0% |
| !!! | AAACGAATAAACCTTTTTTT+AGG | - | chr6_2:2712901-2712920 | None:intergenic | 20.0% |
| !!! | CGTAAATAATGTTTTTTTAG+AGG | + | chr6_2:2712953-2712972 | Msa0904960:intron | 20.0% |
| !!! | TTTTTTTGTATATGCTATTG+AGG | + | chr6_2:2713617-2713636 | Msa0904960:intron | 20.0% |
| !!! | CTATTTTTGATTTTGATATG+CGG | + | chr6_2:2713790-2713809 | Msa0904960:intron | 20.0% |
| !!! | TTTTGTTTGTTTTAGTAAAG+TGG | + | chr6_2:2714143-2714162 | Msa0904960:intron | 20.0% |
| !!! | CATTAGCAATTAATTTGTAA+TGG | - | chr6_2:2714280-2714299 | None:intergenic | 20.0% |
| !! | TACAAATTAATTGCTAATGA+AGG | + | chr6_2:2714281-2714300 | Msa0904960:CDS | 20.0% |
| !!! | AATATTTTACTTTACTTAGG+TGG | + | chr6_2:2714712-2714731 | Msa0904960:intron | 20.0% |
| !!! | ATATTTTCCACTTTGTTTTT+AGG | - | chr6_2:2715153-2715172 | None:intergenic | 20.0% |
| !! | ATCCAAACATATTTATAAAG+AGG | - | chr6_2:2715252-2715271 | None:intergenic | 20.0% |
| !! | CTTTATAAATATGTTTGGAT+TGG | + | chr6_2:2715252-2715271 | Msa0904960:intron | 20.0% |
| !! | TATGAAATGATACATAGAAA+GGG | - | chr6_2:2715435-2715454 | None:intergenic | 20.0% |
| !! | ATATGAAATGATACATAGAA+AGG | - | chr6_2:2715436-2715455 | None:intergenic | 20.0% |
| !! | ATATAAACTACCCTTATATA+AGG | + | chr6_2:2715567-2715586 | Msa0904960:intron | 20.0% |
| !! | ATAGTATTTATTTGCATTTC+AGG | + | chr6_2:2715716-2715735 | Msa0904960:intron | 20.0% |
| !!! | AAATTTTGTGAAGAATGATA+AGG | + | chr6_2:2716192-2716211 | Msa0904960:CDS | 20.0% |
| !!! | AATTTTGTGAAGAATGATAA+GGG | + | chr6_2:2716193-2716212 | Msa0904960:CDS | 20.0% |
| !!! | TGCTTCTATTAATTTGTTTC+AGG | + | chr6_2:2711520-2711539 | Msa0904960:intron | 25.0% |
| !!! | TAATTTGTTTCAGGAAAGTT+AGG | + | chr6_2:2711529-2711548 | Msa0904960:intron | 25.0% |
| ! | AGTGCTATACTATATCAAAA+AGG | - | chr6_2:2712282-2712301 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr6_2:2712754-2712773 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr6_2:2712767-2712786 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr6_2:2712766-2712785 | Msa0904960:intron | 25.0% |
| ! | ATGGATGTCAAAATATCAAA+TGG | + | chr6_2:2712811-2712830 | Msa0904960:intron | 25.0% |
| !! | AATTTGAGATGATAAGTTGT+AGG | + | chr6_2:2713001-2713020 | Msa0904960:intron | 25.0% |
| ! | TGTCTTTGATACTACATTTA+TGG | - | chr6_2:2713029-2713048 | None:intergenic | 25.0% |
| ! | ATTAACATGAATGAAATGAC+TGG | - | chr6_2:2714375-2714394 | None:intergenic | 25.0% |
| ! | TTTACTATGATTACAATGTG+TGG | + | chr6_2:2714448-2714467 | Msa0904960:intron | 25.0% |
| ! | TGTGGTACACAAATAATAAT+TGG | + | chr6_2:2714466-2714485 | Msa0904960:intron | 25.0% |
| !!! | TTGTTTCTAATAGACATTGA+AGG | - | chr6_2:2714882-2714901 | None:intergenic | 25.0% |
| ! | AGTATCTCAATCAATACAAT+GGG | - | chr6_2:2715130-2715149 | None:intergenic | 25.0% |
| ! | CACCTCTTTATAAATATGTT+TGG | + | chr6_2:2715247-2715266 | Msa0904960:intron | 25.0% |
| !! | TATAAATATGTTTGGATTGG+CGG | + | chr6_2:2715255-2715274 | Msa0904960:intron | 25.0% |
| ! | GATGTAATCACCTTATATAA+GGG | - | chr6_2:2715580-2715599 | None:intergenic | 25.0% |
| ! | AGATGTAATCACCTTATATA+AGG | - | chr6_2:2715581-2715600 | None:intergenic | 25.0% |
| !! | GATGAAGTTGTTCAAATTTT+TGG | + | chr6_2:2715896-2715915 | Msa0904960:CDS | 25.0% |
| ! | GTTAATTATGTGCTCAATAA+AGG | + | chr6_2:2716058-2716077 | Msa0904960:CDS | 25.0% |
| ! | ATAGTTATGGATAAGAAATC+AGG | + | chr6_2:2716118-2716137 | Msa0904960:CDS | 25.0% |
| ! | ACAATAGTTGAAGGAAAATT+AGG | - | chr6_2:2716295-2716314 | None:intergenic | 25.0% |
| !! | TCTTTTGTAACAATAGTTGA+AGG | - | chr6_2:2716304-2716323 | None:intergenic | 25.0% |
| ! | AACAACATAACATGCTTATA+AGG | - | chr6_2:2716331-2716350 | None:intergenic | 25.0% |
| !! | TAAAATTGTGAAAAAGCATG+TGG | - | chr6_2:2716373-2716392 | None:intergenic | 25.0% |
| ACATAGTAGCACAAATATCT+TGG | - | chr6_2:2711213-2711232 | None:intergenic | 30.0% | |
| AAATTGTTTGAGCTCAAGAA+AGG | + | chr6_2:2711302-2711321 | Msa0904960:CDS | 30.0% | |
| ATGTATTTACCATTCTTGTC+AGG | - | chr6_2:2711383-2711402 | None:intergenic | 30.0% | |
| AAGCAACAATTAATGGAAGA+TGG | - | chr6_2:2711440-2711459 | None:intergenic | 30.0% | |
| ATCAAACTAGAATGTTCAAC+TGG | + | chr6_2:2711487-2711506 | Msa0904960:intron | 30.0% | |
| AAGTTAGGTGATATTGTTCT+TGG | + | chr6_2:2711544-2711563 | Msa0904960:CDS | 30.0% | |
| ATGACTTACAGTATATGCTT+CGG | - | chr6_2:2711581-2711600 | None:intergenic | 30.0% | |
| CAAAGAATTGAAGAAAGACT+TGG | - | chr6_2:2711692-2711711 | None:intergenic | 30.0% | |
| TTCATAGAAGAAAAGATGTG+TGG | - | chr6_2:2711723-2711742 | None:intergenic | 30.0% | |
| ! | ACACATCTTTTCTTCTATGA+AGG | + | chr6_2:2711722-2711741 | Msa0904960:intron | 30.0% |
| TGGATATAGTACTTCTTTCT+TGG | + | chr6_2:2712228-2712247 | Msa0904960:intron | 30.0% | |
| ! | TTGATATAGTATAGCACTGA+TGG | + | chr6_2:2712284-2712303 | Msa0904960:intron | 30.0% |
| !!! | ATTTTTTCGTATCAGCGTAT+CGG | + | chr6_2:2712525-2712544 | Msa0904960:intron | 30.0% |
| ACCACAAAATATCCAACTTT+GGG | + | chr6_2:2712596-2712615 | Msa0904960:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr6_2:2712669-2712688 | Msa0904960:intron | 30.0% |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr6_2:2712741-2712760 | None:intergenic | 30.0% | |
| TCATCAAAGTTGTCATCAAA+TGG | + | chr6_2:2712792-2712811 | Msa0904960:intron | 30.0% | |
| !! | ATTTGGTGTTCCCTAAAAAA+AGG | + | chr6_2:2712887-2712906 | Msa0904960:intron | 30.0% |
| !! | TTTGGTACATGATTTTTGGA+TGG | + | chr6_2:2713240-2713259 | Msa0904960:intron | 30.0% |
| AAAAGACCCAACAAATCAAT+AGG | - | chr6_2:2713287-2713306 | None:intergenic | 30.0% | |
| ATACAATTCAGTTTATCTCC+TGG | + | chr6_2:2713448-2713467 | Msa0904960:intron | 30.0% | |
| !!! | TAGTTTTTTAGGAATCACTC+TGG | + | chr6_2:2713474-2713493 | Msa0904960:intron | 30.0% |
| !!! | TCTTTTCATTGGTGTTAGTT+GGG | + | chr6_2:2713756-2713775 | Msa0904960:intron | 30.0% |
| !! | AATAAGTGTTGGCGATTTAA+AGG | - | chr6_2:2713950-2713969 | None:intergenic | 30.0% |
| AAGATGTGTTGAATAAGTGT+TGG | - | chr6_2:2713961-2713980 | None:intergenic | 30.0% | |
| ! | CTTCAATGGCAATTCTAAAA+AGG | - | chr6_2:2714074-2714093 | None:intergenic | 30.0% |
| CAGAATGATTCATCATACTT+TGG | + | chr6_2:2714194-2714213 | Msa0904960:intron | 30.0% | |
| TGTATTTAGAAACAGAGGAA+GGG | - | chr6_2:2714344-2714363 | None:intergenic | 30.0% | |
| ATGTATTTAGAAACAGAGGA+AGG | - | chr6_2:2714345-2714364 | None:intergenic | 30.0% | |
| CGATATGTATTTAGAAACAG+AGG | - | chr6_2:2714349-2714368 | None:intergenic | 30.0% | |
| TAGATCAGTAAATGCATGAT+TGG | + | chr6_2:2714414-2714433 | Msa0904960:intron | 30.0% | |
| CATTTCACCATATAGAAACA+TGG | + | chr6_2:2714684-2714703 | Msa0904960:intron | 30.0% | |
| ! | TTAAGAGCCATGTTTCTATA+TGG | - | chr6_2:2714694-2714713 | None:intergenic | 30.0% |
| ATGGTAACTGAATTTGATCA+GGG | - | chr6_2:2714800-2714819 | None:intergenic | 30.0% | |
| TATGGTAACTGAATTTGATC+AGG | - | chr6_2:2714801-2714820 | None:intergenic | 30.0% | |
| !!! | TTCAGTTACCATAGTTTTGA+TGG | + | chr6_2:2714808-2714827 | Msa0904960:CDS | 30.0% |
| GTATTCAACTAAGTTTAGTC+TGG | + | chr6_2:2714961-2714980 | Msa0904960:intron | 30.0% | |
| CAACAATACTACGATACAAT+TGG | + | chr6_2:2714986-2715005 | Msa0904960:intron | 30.0% | |
| CGATACAATTGGAATCAAAA+TGG | + | chr6_2:2714997-2715016 | Msa0904960:intron | 30.0% | |
| ACAATTGGAATCAAAATGGA+TGG | + | chr6_2:2715001-2715020 | Msa0904960:intron | 30.0% | |
| CAATTGGAATCAAAATGGAT+GGG | + | chr6_2:2715002-2715021 | Msa0904960:intron | 30.0% | |
| AATTGGAATCAAAATGGATG+GGG | + | chr6_2:2715003-2715022 | Msa0904960:intron | 30.0% | |
| !! | TACCTCAGTATTTTGAAAGT+TGG | - | chr6_2:2715074-2715093 | None:intergenic | 30.0% |
| GTATCTCAATCAATACAATG+GGG | - | chr6_2:2715129-2715148 | None:intergenic | 30.0% | |
| GAGTATCTCAATCAATACAA+TGG | - | chr6_2:2715131-2715150 | None:intergenic | 30.0% | |
| AGATACTCCTAAAAACAAAG+TGG | + | chr6_2:2715143-2715162 | Msa0904960:intron | 30.0% | |
| !! | TTTTAGGAAAAGTTACGCTT+GGG | - | chr6_2:2715324-2715343 | None:intergenic | 30.0% |
| !! | ATTTTAGGAAAAGTTACGCT+TGG | - | chr6_2:2715325-2715344 | None:intergenic | 30.0% |
| ! | CGTAACTTTTCCTAAAATCA+TGG | + | chr6_2:2715327-2715346 | Msa0904960:intron | 30.0% |
| ! | AACTTTTCCTAAAATCATGG+TGG | + | chr6_2:2715330-2715349 | Msa0904960:intron | 30.0% |
| !! | TCACTACATGTTTGATTTGA+CGG | - | chr6_2:2715380-2715399 | None:intergenic | 30.0% |
| ATACATAGAAAGGGATGTAA+AGG | - | chr6_2:2715426-2715445 | None:intergenic | 30.0% | |
| TCATTTCATATTAGAGATCG+TGG | + | chr6_2:2715445-2715464 | Msa0904960:intron | 30.0% | |
| TGCTTGCATAATTATGGTTA+GGG | - | chr6_2:2715792-2715811 | None:intergenic | 30.0% | |
| TTGCTTGCATAATTATGGTT+AGG | - | chr6_2:2715793-2715812 | None:intergenic | 30.0% | |
| ! | TGCTTTTGCTTGCATAATTA+TGG | - | chr6_2:2715798-2715817 | None:intergenic | 30.0% |
| ACTTAGTTAACCATGCTTAT+TGG | + | chr6_2:2715840-2715859 | Msa0904960:CDS | 30.0% | |
| GGAATAAGGTTATTGTCAAA+AGG | - | chr6_2:2715935-2715954 | None:intergenic | 30.0% | |
| AAAACTTTCCAGTTGGAATA+AGG | - | chr6_2:2715949-2715968 | None:intergenic | 30.0% | |
| GGAAAATTAGAGAACAAAGA+AGG | + | chr6_2:2716079-2716098 | Msa0904960:CDS | 30.0% | |
| AGAGAACAAAGAAGGATTAA+AGG | + | chr6_2:2716087-2716106 | Msa0904960:CDS | 30.0% | |
| TTAGGATGATTAACAGAATC+AGG | - | chr6_2:2716277-2716296 | None:intergenic | 30.0% | |
| CATCATTCTTCTCCTTCTTA+TGG | - | chr6_2:2711277-2711296 | None:intergenic | 35.0% | |
| GAAAGGTGATCTTACTTTGA+AGG | + | chr6_2:2711319-2711338 | Msa0904960:CDS | 35.0% | |
| ! | TTACTTTGAAGGTCACTAAC+TGG | + | chr6_2:2711330-2711349 | Msa0904960:CDS | 35.0% |
| ! | TACTTTGAAGGTCACTAACT+GGG | + | chr6_2:2711331-2711350 | Msa0904960:CDS | 35.0% |
| ATTTACCATTCTTGTCAGGT+AGG | - | chr6_2:2711379-2711398 | None:intergenic | 35.0% | |
| TGACTTACAGTATATGCTTC+GGG | - | chr6_2:2711580-2711599 | None:intergenic | 35.0% | |
| AAGATGACTAGATATCGTCA+CGG | - | chr6_2:2711898-2711917 | None:intergenic | 35.0% | |
| !!! | TCATCCATTTTGAAGTATCG+TGG | - | chr6_2:2711976-2711995 | None:intergenic | 35.0% |
| GATACTCATCTGATACGTAT+CGG | - | chr6_2:2712047-2712066 | None:intergenic | 35.0% | |
| TATCGGTGCAGGATAATTAT+TGG | - | chr6_2:2712138-2712157 | None:intergenic | 35.0% | |
| !!! | AGTACTGATGTGTTCTGTTT+TGG | + | chr6_2:2712208-2712227 | Msa0904960:intron | 35.0% |
| CACCACAAAATATCCAACTT+TGG | + | chr6_2:2712595-2712614 | Msa0904960:intron | 35.0% | |
| CCACAAAATATCCAACTTTG+GGG | + | chr6_2:2712597-2712616 | Msa0904960:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr6_2:2712674-2712693 | None:intergenic | 35.0% | |
| AGAGAGAAAAAGGAAGAGAT+AGG | - | chr6_2:2712731-2712750 | None:intergenic | 35.0% | |
| TAATTTAGTAGCTCAGCTGT+TGG | + | chr6_2:2712927-2712946 | Msa0904960:intron | 35.0% | |
| TGTGGCAACTTCTTCTTTAT+AGG | + | chr6_2:2713088-2713107 | Msa0904960:intron | 35.0% | |
| TGCTTTATGTAATGCAGATG+CGG | + | chr6_2:2713173-2713192 | Msa0904960:intron | 35.0% | |
| !! | GAGGTTTGGTACATGATTTT+TGG | + | chr6_2:2713236-2713255 | Msa0904960:intron | 35.0% |
| !! | TACATGATTTTTGGATGGCT+TGG | + | chr6_2:2713245-2713264 | Msa0904960:intron | 35.0% |
| !! | GTCCTTCCTATTGATTTGTT+GGG | + | chr6_2:2713278-2713297 | Msa0904960:intron | 35.0% |
| !!! | TGATTTGTTGGGTCTTTTTG+AGG | + | chr6_2:2713289-2713308 | Msa0904960:intron | 35.0% |
| !!! | GATTTGTTGGGTCTTTTTGA+GGG | + | chr6_2:2713290-2713309 | Msa0904960:intron | 35.0% |
| !! | ATTTGTTGGGTCTTTTTGAG+GGG | + | chr6_2:2713291-2713310 | Msa0904960:intron | 35.0% |
| ! | TGTGTTGATCTAATTCTCTG+TGG | + | chr6_2:2713353-2713372 | Msa0904960:intron | 35.0% |
| ATTCCTAAAAAACTAGTGCC+AGG | - | chr6_2:2713469-2713488 | None:intergenic | 35.0% | |
| ! | ACTCATAATGGAAACAAGGA+TGG | - | chr6_2:2713500-2713519 | None:intergenic | 35.0% |
| ! | ATCCTTGTTTCCATTATGAG+TGG | + | chr6_2:2713499-2713518 | Msa0904960:intron | 35.0% |
| ! | TCCTTGTTTCCATTATGAGT+GGG | + | chr6_2:2713500-2713519 | Msa0904960:intron | 35.0% |
| GTATATGCTATTGAGGTAGT+AGG | + | chr6_2:2713624-2713643 | Msa0904960:intron | 35.0% | |
| TTTCTATCTCGTCTTTGGAT+GGG | + | chr6_2:2713724-2713743 | Msa0904960:intron | 35.0% | |
| !!! | CTCTTTTCATTGGTGTTAGT+TGG | + | chr6_2:2713755-2713774 | Msa0904960:intron | 35.0% |
| !! | TTGGTTAATGCAGAGTATTG+AGG | - | chr6_2:2714503-2714522 | None:intergenic | 35.0% |
| ! | GTGGAAAAGTATGTAAGAGA+AGG | + | chr6_2:2714766-2714785 | Msa0904960:CDS | 35.0% |
| TGGTAACTGAATTTGATCAG+GGG | - | chr6_2:2714799-2714818 | None:intergenic | 35.0% | |
| CTTCTTCACCATCAAAACTA+TGG | - | chr6_2:2714819-2714838 | None:intergenic | 35.0% | |
| !!! | CATAGTTTTGATGGTGAAGA+AGG | + | chr6_2:2714817-2714836 | Msa0904960:CDS | 35.0% |
| GTCCAACTTTCAAAATACTG+AGG | + | chr6_2:2715069-2715088 | Msa0904960:intron | 35.0% | |
| AACAAAGTCAAAATGACACC+AGG | + | chr6_2:2715285-2715304 | Msa0904960:intron | 35.0% | |
| TTGGGATCTTCAAAAAATCC+TGG | - | chr6_2:2715306-2715325 | None:intergenic | 35.0% | |
| TTCATATTAGAGATCGTGGT+TGG | + | chr6_2:2715449-2715468 | Msa0904960:intron | 35.0% | |
| GATGTGATTACCTCATGTAA+GGG | + | chr6_2:2715512-2715531 | Msa0904960:intron | 35.0% | |
| !! | ATGAAAAGTACCCTTACATG+AGG | - | chr6_2:2715525-2715544 | None:intergenic | 35.0% |
| ATTTGCATTTCAGGATTTCC+TGG | + | chr6_2:2715725-2715744 | Msa0904960:intron | 35.0% | |
| ! | TTAACTAAGTTGACTGGTGT+AGG | - | chr6_2:2715830-2715849 | None:intergenic | 35.0% |
| ! | CTTCATCTAAAATGTTGCCA+CGG | - | chr6_2:2715883-2715902 | None:intergenic | 35.0% |
| GACAATAACCTTATTCCAAC+TGG | + | chr6_2:2715938-2715957 | Msa0904960:CDS | 35.0% | |
| ACTGATGAAAACTTTCCAGT+TGG | - | chr6_2:2715956-2715975 | None:intergenic | 35.0% | |
| ! | GGAAAGTTTTCATCAGTCAA+AGG | + | chr6_2:2715959-2715978 | Msa0904960:CDS | 35.0% |
| !! | TGTGGCTTTAGGAAATCATT+TGG | - | chr6_2:2715989-2716008 | None:intergenic | 35.0% |
| TTCCTAAAGCCACAAATTGT+TGG | + | chr6_2:2715995-2716014 | Msa0904960:CDS | 35.0% | |
| ATTCTTGCACCAACAATTTG+TGG | - | chr6_2:2716007-2716026 | None:intergenic | 35.0% | |
| AAAGGTTGCAGCTATAGTTA+TGG | + | chr6_2:2716105-2716124 | Msa0904960:CDS | 35.0% | |
| GCACTATAAAATTGCAAACC+TGG | - | chr6_2:2716172-2716191 | None:intergenic | 35.0% | |
| GTGAAGAATGATAAGGGAAA+AGG | + | chr6_2:2716199-2716218 | Msa0904960:CDS | 35.0% | |
| AAGAATGATAAGGGAAAAGG+AGG | + | chr6_2:2716202-2716221 | Msa0904960:CDS | 35.0% | |
| AGAATGATAAGGGAAAAGGA+GGG | + | chr6_2:2716203-2716222 | Msa0904960:CDS | 35.0% | |
| ! | TGAAAAAGCATGTGGAACTT+TGG | - | chr6_2:2716365-2716384 | None:intergenic | 35.0% |
| ! | CTTCTCTTCTTAGCTGTTTC+TGG | + | chr6_2:2711233-2711252 | Msa0904960:CDS | 40.0% |
| !! | GCTGTTTCTGGATTTGTCAA+TGG | + | chr6_2:2711245-2711264 | Msa0904960:CDS | 40.0% |
| CAATGGCTCAATCCATAAGA+AGG | + | chr6_2:2711262-2711281 | Msa0904960:CDS | 40.0% | |
| ! | ACTTTGAAGGTCACTAACTG+GGG | + | chr6_2:2711332-2711351 | Msa0904960:CDS | 40.0% |
| TTAGTCCTACCTGACAAGAA+TGG | + | chr6_2:2711371-2711390 | Msa0904960:CDS | 40.0% | |
| GAGGAGGAGATAAGAAATAG+AGG | - | chr6_2:2711866-2711885 | None:intergenic | 40.0% | |
| ! | CTATTTCTTATCTCCTCCTC+TGG | + | chr6_2:2711866-2711885 | Msa0904960:intron | 40.0% |
| GAAGCCACGATACTTCAAAA+TGG | + | chr6_2:2711969-2711988 | Msa0904960:intron | 40.0% | |
| !! | GATACGTATCGGAAAGTATC+AGG | - | chr6_2:2712036-2712055 | None:intergenic | 40.0% |
| ! | TGATACGTATCGGGAAGTAT+CGG | - | chr6_2:2712106-2712125 | None:intergenic | 40.0% |
| ATACTCTCCTGATACGTATC+GGG | - | chr6_2:2712115-2712134 | None:intergenic | 40.0% | |
| GATACTCTCCTGATACGTAT+CGG | - | chr6_2:2712116-2712135 | None:intergenic | 40.0% | |
| TAATTGGGAAATTTCGGAGC+AGG | - | chr6_2:2712161-2712180 | None:intergenic | 40.0% | |
| TTCGTATCGTATCTCGTATC+CGG | + | chr6_2:2712560-2712579 | Msa0904960:intron | 40.0% | |
| ! | CCCCAAAGTTGGATATTTTG+TGG | - | chr6_2:2712600-2712619 | None:intergenic | 40.0% |
| TAAAATGTGCACCCCAAAGT+TGG | - | chr6_2:2712611-2712630 | None:intergenic | 40.0% | |
| ! | AGTCACCTTTTTGTTACCTG+TGG | + | chr6_2:2713204-2713223 | Msa0904960:intron | 40.0% |
| ! | GTCACCTTTTTGTTACCTGT+GGG | + | chr6_2:2713205-2713224 | Msa0904960:intron | 40.0% |
| ! | TCACCTTTTTGTTACCTGTG+GGG | + | chr6_2:2713206-2713225 | Msa0904960:intron | 40.0% |
| AAACCCCACAGGTAACAAAA+AGG | - | chr6_2:2713212-2713231 | None:intergenic | 40.0% | |
| !!! | TGATTTTTGGATGGCTTGGT+TGG | + | chr6_2:2713249-2713268 | Msa0904960:intron | 40.0% |
| !!! | GATTTTTGGATGGCTTGGTT+GGG | + | chr6_2:2713250-2713269 | Msa0904960:intron | 40.0% |
| !! | GGTCCTTCCTATTGATTTGT+TGG | + | chr6_2:2713277-2713296 | Msa0904960:intron | 40.0% |
| GACCCAACAAATCAATAGGA+AGG | - | chr6_2:2713283-2713302 | None:intergenic | 40.0% | |
| !! | GTTTCCTAGGAGAGAGTATT+AGG | + | chr6_2:2713322-2713341 | Msa0904960:intron | 40.0% |
| TACACCTAATACTCTCTCCT+AGG | - | chr6_2:2713329-2713348 | None:intergenic | 40.0% | |
| TGATCTAATTCTCTGTGGTG+TGG | + | chr6_2:2713358-2713377 | Msa0904960:intron | 40.0% | |
| !!! | TCTCCTGGCACTAGTTTTTT+AGG | + | chr6_2:2713463-2713482 | Msa0904960:intron | 40.0% |
| ! | ACCCACTCATAATGGAAACA+AGG | - | chr6_2:2713504-2713523 | None:intergenic | 40.0% |
| TTGTTTCCATTATGAGTGGG+TGG | + | chr6_2:2713503-2713522 | Msa0904960:intron | 40.0% | |
| GTTTCTATCTCGTCTTTGGA+TGG | + | chr6_2:2713723-2713742 | Msa0904960:intron | 40.0% | |
| TTCTATCTCGTCTTTGGATG+GGG | + | chr6_2:2713725-2713744 | Msa0904960:intron | 40.0% | |
| !! | GGGGTGTTTTCTCTTTTCAT+TGG | + | chr6_2:2713745-2713764 | Msa0904960:intron | 40.0% |
| TGAGAGTAAGCAAGCTTCAA+TGG | - | chr6_2:2714088-2714107 | None:intergenic | 40.0% | |
| GGAGCTCAGTTTACTCTAAA+TGG | + | chr6_2:2714251-2714270 | Msa0904960:CDS | 40.0% | |
| GAAGGAAACAACACTCTTCA+TGG | + | chr6_2:2714299-2714318 | Msa0904960:CDS | 40.0% | |
| AGAACATCACTGAATCCTCT+AGG | - | chr6_2:2714739-2714758 | None:intergenic | 40.0% | |
| GAGGATTCAGTGATGTTCTT+TGG | + | chr6_2:2714740-2714759 | Msa0904960:CDS | 40.0% | |
| ! | CAGTGATGTTCTTTGGAAAG+TGG | + | chr6_2:2714747-2714766 | Msa0904960:CDS | 40.0% |
| AATCAAAATGGATGGGGTAG+TGG | + | chr6_2:2715009-2715028 | Msa0904960:intron | 40.0% | |
| ACCAGTTGAATCAGCAAGTT+CGG | + | chr6_2:2715047-2715066 | Msa0904960:intron | 40.0% | |
| ! | CAGCTAACCACCATGATTTT+AGG | - | chr6_2:2715340-2715359 | None:intergenic | 40.0% |
| CTCGTACTTGATGTCTACAT+AGG | + | chr6_2:2715490-2715509 | Msa0904960:intron | 40.0% | |
| GGATGTGATTACCTCATGTA+AGG | + | chr6_2:2715511-2715530 | Msa0904960:intron | 40.0% | |
| !! | TGTAGCTCACTGTTACTTTG+AGG | - | chr6_2:2715754-2715773 | None:intergenic | 40.0% |
| GTAACAGTGAGCTACATTCT+AGG | + | chr6_2:2715758-2715777 | Msa0904960:CDS | 40.0% | |
| ! | GCATGGTTAACTAAGTTGAC+TGG | - | chr6_2:2715836-2715855 | None:intergenic | 40.0% |
| AACCATGCTTATTGGAACCT+AGG | + | chr6_2:2715848-2715867 | Msa0904960:CDS | 40.0% | |
| TTCCTAGGTTCCAATAAGCA+TGG | - | chr6_2:2715853-2715872 | None:intergenic | 40.0% | |
| CACCAACAATTTGTGGCTTT+AGG | - | chr6_2:2716000-2716019 | None:intergenic | 40.0% | |
| AAGCTTAGTACTAATGCACC+AGG | + | chr6_2:2716151-2716170 | Msa0904960:CDS | 40.0% | |
| !! | GGAAAGTATCAGGCAGGTAT+CGG | - | chr6_2:2712026-2712045 | None:intergenic | 45.0% |
| GATACTTCCCGATACGTATC+AGG | + | chr6_2:2712105-2712124 | Msa0904960:intron | 45.0% | |
| GGAAATTTCGGAGCAGGTAT+CGG | - | chr6_2:2712155-2712174 | None:intergenic | 45.0% | |
| !!! | AGCACTGATGGTGCTCTTTT+TGG | + | chr6_2:2712296-2712315 | Msa0904960:intron | 45.0% |
| !! | GCACTGATGGTGCTCTTTTT+GGG | + | chr6_2:2712297-2712316 | Msa0904960:intron | 45.0% |
| ATGTGCTACGAGCTTATGAC+TGG | + | chr6_2:2712387-2712406 | Msa0904960:intron | 45.0% | |
| TGTGGTGCATATGTGAAGTC+CGG | - | chr6_2:2712582-2712601 | None:intergenic | 45.0% | |
| GACGCTGGATGTAGAACAAT+TGG | + | chr6_2:2713422-2713441 | Msa0904960:intron | 45.0% | |
| TTTCCATTATGAGTGGGTGG+TGG | + | chr6_2:2713506-2713525 | Msa0904960:intron | 45.0% | |
| TATTGGTCCCAGCAGATTGA+TGG | - | chr6_2:2713534-2713553 | None:intergenic | 45.0% | |
| CTGCTGGGACCAATAGATTA+CGG | + | chr6_2:2713539-2713558 | Msa0904960:intron | 45.0% | |
| TGCTGGGACCAATAGATTAC+GGG | + | chr6_2:2713540-2713559 | Msa0904960:intron | 45.0% | |
| CAACTGGAATCCATGCTCAA+AGG | - | chr6_2:2713586-2713605 | None:intergenic | 45.0% | |
| TTATTTCATCTCCCGAGAGG+TGG | + | chr6_2:2713648-2713667 | Msa0904960:intron | 45.0% | |
| TATTTCATCTCCCGAGAGGT+GGG | + | chr6_2:2713649-2713668 | Msa0904960:intron | 45.0% | |
| AAAAACAAAGCCCACCTCTC+GGG | - | chr6_2:2713662-2713681 | None:intergenic | 45.0% | |
| CAAAAACAAAGCCCACCTCT+CGG | - | chr6_2:2713663-2713682 | None:intergenic | 45.0% | |
| !!! | GAGAGGTGGGCTTTGTTTTT+GGG | + | chr6_2:2713662-2713681 | Msa0904960:intron | 45.0% |
| ! | GGGTGTTTCTATCTCGTCTT+TGG | + | chr6_2:2713719-2713738 | Msa0904960:intron | 45.0% |
| TCTATCTCGTCTTTGGATGG+GGG | + | chr6_2:2713726-2713745 | Msa0904960:intron | 45.0% | |
| GAGTCGTGTGATAGATGTGA+TGG | - | chr6_2:2713991-2714010 | None:intergenic | 45.0% | |
| !! | TCATACTTTGGAGCAACCGT+TGG | + | chr6_2:2714206-2714225 | Msa0904960:CDS | 45.0% |
| TCTGTTAGCAACCCTACCAA+CGG | - | chr6_2:2714225-2714244 | None:intergenic | 45.0% | |
| GGTAGGGTTGCTAACAGAAT+TGG | + | chr6_2:2714227-2714246 | Msa0904960:CDS | 45.0% | |
| AGGGTTGCTAACAGAATTGG+AGG | + | chr6_2:2714230-2714249 | Msa0904960:CDS | 45.0% | |
| CTTTACTTAGGTGGACCTAG+AGG | + | chr6_2:2714721-2714740 | Msa0904960:intron | 45.0% | |
| !! | ACCGAACTTGCTGATTCAAC+TGG | - | chr6_2:2715051-2715070 | None:intergenic | 45.0% |
| !! | ATATGTTTGGATTGGCGGCT+AGG | + | chr6_2:2715260-2715279 | Msa0904960:intron | 45.0% |
| !! | ACTGTTACTTTGAGGTCACC+AGG | - | chr6_2:2715746-2715765 | None:intergenic | 45.0% |
| CTAAAATGTTGCCACGGTTG+TGG | - | chr6_2:2715877-2715896 | None:intergenic | 45.0% | |
| ACCACGTTCTGCACTTTGTT+TGG | + | chr6_2:2716237-2716256 | Msa0904960:CDS | 45.0% | |
| TCCAAACAAAGTGCAGAACG+TGG | - | chr6_2:2716241-2716260 | None:intergenic | 45.0% | |
| !! | TAAAAATAAAATTTAATCTT+CGG | - | chr6_2:2712069-2712088 | None:intergenic | 5.0% |
| ATCGTCACGGATCATTCCAG+AGG | - | chr6_2:2711885-2711904 | None:intergenic | 50.0% | |
| TATCGGTGCAGAATACGCAG+AGG | - | chr6_2:2712009-2712028 | None:intergenic | 50.0% | |
| !! | CGTATCGGAAAGTATCAGGC+AGG | - | chr6_2:2712032-2712051 | None:intergenic | 50.0% |
| TAGGGTCATGCTAACGTGCT+TGG | - | chr6_2:2712853-2712872 | None:intergenic | 50.0% | |
| !! | AGGGGTGTTGTGTGTTTCCT+AGG | + | chr6_2:2713309-2713328 | Msa0904960:intron | 50.0% |
| TCTCTGTGGTGTGGTCTATC+TGG | + | chr6_2:2713367-2713386 | Msa0904960:intron | 50.0% | |
| CTGGTCTGCTCGTAATGATC+TGG | + | chr6_2:2713386-2713405 | Msa0904960:intron | 50.0% | |
| GTTCCACCACCCACTCATAA+TGG | - | chr6_2:2713512-2713531 | None:intergenic | 50.0% | |
| TGGTGGAACCATCAATCTGC+TGG | + | chr6_2:2713523-2713542 | Msa0904960:intron | 50.0% | |
| GGTGGAACCATCAATCTGCT+GGG | + | chr6_2:2713524-2713543 | Msa0904960:intron | 50.0% | |
| GCTGGGACCAATAGATTACG+GGG | + | chr6_2:2713541-2713560 | Msa0904960:intron | 50.0% | |
| CTGGGACCAATAGATTACGG+GGG | + | chr6_2:2713542-2713561 | Msa0904960:intron | 50.0% | |
| ACTCCTCCCCCGTAATCTAT+TGG | - | chr6_2:2713551-2713570 | None:intergenic | 50.0% | |
| GGCTTATTTCATCTCCCGAG+AGG | + | chr6_2:2713645-2713664 | Msa0904960:intron | 50.0% | |
| !!! | CGAGAGGTGGGCTTTGTTTT+TGG | + | chr6_2:2713661-2713680 | Msa0904960:intron | 50.0% |
| !!! | AGGTGGGCTTTGTTTTTGGG+TGG | + | chr6_2:2713665-2713684 | Msa0904960:intron | 50.0% |
| !!! | TGGGCTTTGTTTTTGGGTGG+AGG | + | chr6_2:2713668-2713687 | Msa0904960:intron | 50.0% |
| !!! | GGGCTTTGTTTTTGGGTGGA+GGG | + | chr6_2:2713669-2713688 | Msa0904960:intron | 50.0% |
| ! | GTCCCTTGCTTGCCTTTTAG+CGG | + | chr6_2:2713691-2713710 | Msa0904960:intron | 50.0% |
| ! | TCCCTTGCTTGCCTTTTAGC+GGG | + | chr6_2:2713692-2713711 | Msa0904960:intron | 50.0% |
| ACCCGCTAAAAGGCAAGCAA+GGG | - | chr6_2:2713696-2713715 | None:intergenic | 50.0% | |
| !! | ACTTTGGAGCAACCGTTGGT+AGG | + | chr6_2:2714210-2714229 | Msa0904960:CDS | 50.0% |
| !! | CTTTGGAGCAACCGTTGGTA+GGG | + | chr6_2:2714211-2714230 | Msa0904960:CDS | 50.0% |
| ! | AGATCGTGGTTGGTACTGAG+TGG | + | chr6_2:2715459-2715478 | Msa0904960:intron | 50.0% |
| AACCTAGGAAACCACAACCG+TGG | + | chr6_2:2715863-2715882 | Msa0904960:CDS | 50.0% | |
| GTCACGGATCATTCCAGAGG+AGG | - | chr6_2:2711882-2711901 | None:intergenic | 55.0% | |
| TTACCTGTGGGGTTTCGTCG+AGG | + | chr6_2:2713217-2713236 | Msa0904960:intron | 55.0% | |
| AAACCTCGACGAAACCCCAC+AGG | - | chr6_2:2713223-2713242 | None:intergenic | 55.0% | |
| TGTGGGGTTTCGTCGAGGTT+TGG | + | chr6_2:2713222-2713241 | Msa0904960:intron | 55.0% | |
| !! | TGGATGGCTTGGTTGGGAGT+TGG | + | chr6_2:2713256-2713275 | Msa0904960:intron | 55.0% |
| GGTGTTCTCTGCTATGACGC+TGG | + | chr6_2:2713407-2713426 | Msa0904960:intron | 55.0% | |
| GGACCAATAGATTACGGGGG+AGG | + | chr6_2:2713545-2713564 | Msa0904960:intron | 55.0% | |
| ! | TACGGGGGAGGAGTTTTGCT+TGG | + | chr6_2:2713557-2713576 | Msa0904960:intron | 55.0% |
| ! | ACGGGGGAGGAGTTTTGCTT+GGG | + | chr6_2:2713558-2713577 | Msa0904960:intron | 55.0% |
| TGCTTGGGTGCCTTTGAGCA+TGG | + | chr6_2:2713573-2713592 | Msa0904960:intron | 55.0% | |
| CACCCGCTAAAAGGCAAGCA+AGG | - | chr6_2:2713697-2713716 | None:intergenic | 55.0% | |
| !! | TGCTTGCCTTTTAGCGGGTG+TGG | + | chr6_2:2713697-2713716 | Msa0904960:intron | 55.0% |
| !! | GCTTGCCTTTTAGCGGGTGT+GGG | + | chr6_2:2713698-2713717 | Msa0904960:intron | 55.0% |
| !! | CTTGCCTTTTAGCGGGTGTG+GGG | + | chr6_2:2713699-2713718 | Msa0904960:intron | 55.0% |
| AACACCCCACACCCGCTAAA+AGG | - | chr6_2:2713706-2713725 | None:intergenic | 55.0% | |
| TGCCACGGTTGTGGTTTCCT+AGG | - | chr6_2:2715868-2715887 | None:intergenic | 55.0% | |
| !! | TTCGGAGCAGGTATCGGTGC+AGG | - | chr6_2:2712149-2712168 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2711203 | 2716393 | 2711203 | ID=Msa0904960;Name=Msa0904960 |
| chr6_2 | mRNA | 2711203 | 2716393 | 2711203 | ID=Msa0904960-mRNA-1;Parent=Msa0904960;Name=Msa0904960-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0.75|0.8|5|0|385 |
| chr6_2 | exon | 2711203 | 2711392 | 2711203 | ID=Msa0904960-mRNA-1:exon:904;Parent=Msa0904960-mRNA-1 |
| chr6_2 | exon | 2711542 | 2711591 | 2711542 | ID=Msa0904960-mRNA-1:exon:905;Parent=Msa0904960-mRNA-1 |
| chr6_2 | exon | 2714197 | 2714350 | 2714197 | ID=Msa0904960-mRNA-1:exon:906;Parent=Msa0904960-mRNA-1 |
| chr6_2 | exon | 2714731 | 2714838 | 2714731 | ID=Msa0904960-mRNA-1:exon:907;Parent=Msa0904960-mRNA-1 |
| chr6_2 | exon | 2715738 | 2716393 | 2715738 | ID=Msa0904960-mRNA-1:exon:908;Parent=Msa0904960-mRNA-1 |
| chr6_2 | CDS | 2711203 | 2711392 | 2711203 | ID=Msa0904960-mRNA-1:cds;Parent=Msa0904960-mRNA-1 |
| chr6_2 | CDS | 2711542 | 2711591 | 2711542 | ID=Msa0904960-mRNA-1:cds;Parent=Msa0904960-mRNA-1 |
| chr6_2 | CDS | 2714197 | 2714350 | 2714197 | ID=Msa0904960-mRNA-1:cds;Parent=Msa0904960-mRNA-1 |
| chr6_2 | CDS | 2714731 | 2714838 | 2714731 | ID=Msa0904960-mRNA-1:cds;Parent=Msa0904960-mRNA-1 |
| chr6_2 | CDS | 2715738 | 2716393 | 2715738 | ID=Msa0904960-mRNA-1:cds;Parent=Msa0904960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
