AlfalfaGEDB | Msa0871900

M. sativa cultivar zhongmu-4 / Msa0871900

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363
PFAM: PF04770.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871900	XP_039682709.1	95.294	85	0	1	1	85	1	81	2.46e-50	163

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871900	sp\|Q9LJW5\|MIF2_ARATH	59.596	99	25	3	1	84	1	99	7.90e-31	107

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa0871900	TF	zf-HD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0871900	Msa0905270	0.806880	6.634088e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871900	MtrunA17_Chr6g0453221	94.118	85	1	1	1	85	1	81	1.27e-53	161
Msa0871900	MtrunA17_Chr3g0092371	68.675	83	23	2	1	81	1	82	2.18e-36	117
Msa0871900	MtrunA17_Chr1g0188441	58.209	67	28	0	15	81	3	69	2.88e-23	87.8
Msa0871900	MtrunA17_Chr4g0060731	65.333	75	19	3	1	71	1	72	5.31e-23	84.0
Msa0871900	MtrunA17_Chr3g0133181	60.000	55	22	0	18	72	77	131	1.03e-20	82.8
Msa0871900	MtrunA17_Chr2g0315941	56.923	65	26	1	21	83	68	132	3.25e-20	81.3
Msa0871900	MtrunA17_Chr8g0367691	56.061	66	27	1	20	83	68	133	4.70e-20	80.9
Msa0871900	MtrunA17_Chr8g0361671	67.273	55	16	1	18	70	61	115	1.92e-19	80.5
Msa0871900	MtrunA17_Chr4g0076821	63.158	57	21	0	20	76	112	168	1.94e-19	80.5
Msa0871900	MtrunA17_Chr7g0217231	59.322	59	22	1	16	72	83	141	2.48e-19	79.7
Msa0871900	MtrunA17_Chr5g0412501	54.098	61	28	0	20	80	77	137	6.21e-19	77.8
Msa0871900	MtrunA17_Chr5g0427051	56.667	60	26	0	19	78	56	115	1.00e-18	77.4
Msa0871900	MtrunA17_Chr5g0404271	59.615	52	21	0	21	72	99	150	3.33e-18	76.3
Msa0871900	MtrunA17_Chr6g0453231	61.111	54	19	1	21	72	91	144	4.83e-17	73.6
Msa0871900	MtrunA17_Chr6g0479901	51.667	60	28	1	21	79	19	78	1.33e-15	67.4
Msa0871900	MtrunA17_Chr8g0357721	50.000	38	19	0	30	67	14	51	1.30e-11	56.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871900	AT3G28917.1	59.596	99	25	3	1	84	1	99	8.03e-32	107
Msa0871900	AT1G18835.1	60.000	90	26	3	1	83	1	87	3.92e-30	102
Msa0871900	AT1G74660.1	50.495	101	31	2	1	82	2	102	6.60e-28	97.4
Msa0871900	AT1G74660.2	50.562	89	27	1	1	72	2	90	4.14e-26	92.4
Msa0871900	AT4G24660.1	66.071	56	19	0	19	74	47	102	3.65e-23	88.6
Msa0871900	AT4G24660.2	66.071	56	19	0	19	74	47	102	4.57e-23	88.6
Msa0871900	AT2G02540.2	55.224	67	30	0	6	72	72	138	2.86e-22	87.8
Msa0871900	AT2G02540.1	55.224	67	30	0	6	72	72	138	2.86e-22	87.8
Msa0871900	AT1G14440.1	55.072	69	29	1	15	81	84	152	9.02e-22	86.3
Msa0871900	AT1G14440.2	55.072	69	29	1	15	81	84	152	9.02e-22	86.3
Msa0871900	AT5G15210.1	60.938	64	23	1	17	78	52	115	1.01e-20	83.2
Msa0871900	AT3G50890.1	54.412	68	28	1	7	71	43	110	3.42e-20	81.3
Msa0871900	AT1G75240.1	59.677	62	25	0	16	77	71	132	5.38e-20	81.6
Msa0871900	AT2G18350.1	58.209	67	25	1	19	82	80	146	1.13e-19	80.1
Msa0871900	AT5G65410.1	60.000	55	22	0	17	71	71	125	2.13e-19	79.7
Msa0871900	AT1G69600.1	64.815	54	17	1	19	70	29	82	2.15e-18	76.3
Msa0871900	AT3G28920.1	59.375	64	24	1	19	80	50	113	4.11e-16	71.2
Msa0871900	AT5G60480.1	59.259	54	20	1	18	69	34	87	4.82e-16	70.1
Msa0871900	AT5G42780.1	60.784	51	18	1	21	71	64	112	1.96e-15	68.6
Msa0871900	AT5G39760.1	49.333	75	36	1	6	78	41	115	4.08e-15	68.6
Msa0871900	AT1G14687.1	50.769	65	23	4	21	85	7	62	6.24e-15	65.9

Find 11 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAAGAAGTGTTGTGAAATA+TGG	0.276912	6_1:+7153509	Msa0871900:CDS
GTTGGAGGTTATGCTGTTGA+TGG	0.403038	6_1:+7153560	Msa0871900:CDS
TTTGTACCTTGTTCACTACT+TGG	0.415225	6_1:-7153599	None:intergenic
TATTTCACAACACTTCTTTG+TGG	0.421230	6_1:-7153506	None:intergenic
AGTAGTGAACAAGGTACAAA+TGG	0.484103	6_1:+7153602	Msa0871900:CDS
AGTTCTTCACCTCACTCAAA+TGG	0.507969	6_1:+7153695	Msa0871900:CDS
TCTCTCACTTGTGCTGCTTG+TGG	0.516521	6_1:+7153626	Msa0871900:CDS
AAGAATCATGCAGCTAATGT+TGG	0.517780	6_1:+7153542	Msa0871900:CDS
AATCATGCAGCTAATGTTGG+AGG	0.576991	6_1:+7153545	Msa0871900:CDS
TTTCAAGTACCATTTGAGTG+AGG	0.642570	6_1:-7153704	None:intergenic
TTCATGCCAAGTAGTGAACA+AGG	0.658987	6_1:+7153593	Msa0871900:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TATTTCACAACACTTCTTTG+TGG	-	chr6_1:7153509-7153528	None:intergenic	30.0%
!!	CAAAGAAGTGTTGTGAAATA+TGG	+	chr6_1:7153509-7153528	Msa0871900:CDS	30.0%
	AAGAATCATGCAGCTAATGT+TGG	+	chr6_1:7153542-7153561	Msa0871900:CDS	35.0%
	TTTGTACCTTGTTCACTACT+TGG	-	chr6_1:7153602-7153621	None:intergenic	35.0%
	AGTAGTGAACAAGGTACAAA+TGG	+	chr6_1:7153602-7153621	Msa0871900:CDS	35.0%
	AATCATGCAGCTAATGTTGG+AGG	+	chr6_1:7153545-7153564	Msa0871900:CDS	40.0%
	TTCATGCCAAGTAGTGAACA+AGG	+	chr6_1:7153593-7153612	Msa0871900:CDS	40.0%
	AGTTCTTCACCTCACTCAAA+TGG	+	chr6_1:7153695-7153714	Msa0871900:CDS	40.0%
	GTTGGAGGTTATGCTGTTGA+TGG	+	chr6_1:7153560-7153579	Msa0871900:CDS	45.0%
!!	TCTCTCACTTGTGCTGCTTG+TGG	+	chr6_1:7153626-7153645	Msa0871900:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	7153467	7153724	7153467	ID=Msa0871900;Name=Msa0871900
chr6_1	mRNA	7153467	7153724	7153467	ID=Msa0871900-mRNA-1;Parent=Msa0871900;Name=Msa0871900-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|85
chr6_1	exon	7153467	7153724	7153467	ID=Msa0871900-mRNA-1:exon:2162;Parent=Msa0871900-mRNA-1
chr6_1	CDS	7153467	7153724	7153467	ID=Msa0871900-mRNA-1:cds;Parent=Msa0871900-mRNA-1

Gene Sequence	>Msa0871900 ATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATCCACAAAGAAGTGTTGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTCATGCCAAGTAGTGAACAAGGTACAAATGGTTCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAAGTTGAAGTTGTTTCTGAGAGTTCTTCACCTCACTCAAATGGTACTTGA
Protein sequence	>Msa0871900 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSSEQGTNGSLTCAACGCHRNFHKREVEVVSESSSPHSNGT*