AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905270 MtrunA17_Chr6g0453221 94.118 85 1 1 18 102 1 81 2.59e-53 161
Msa0905270 MtrunA17_Chr3g0092371 68.675 83 23 2 18 98 1 82 3.60e-36 118
Msa0905270 MtrunA17_Chr1g0188441 58.209 67 28 0 32 98 3 69 2.48e-23 88.6
Msa0905270 MtrunA17_Chr4g0060731 65.333 75 19 3 18 88 1 72 1.28e-22 83.6
Msa0905270 MtrunA17_Chr3g0133181 60.000 55 22 0 35 89 77 131 1.18e-20 83.6
Msa0905270 MtrunA17_Chr2g0315941 56.923 65 26 1 38 100 68 132 6.70e-20 81.3
Msa0905270 MtrunA17_Chr8g0367691 56.061 66 27 1 37 100 68 133 1.07e-19 80.5
Msa0905270 MtrunA17_Chr8g0361671 67.273 55 16 1 35 87 61 115 2.06e-19 81.3
Msa0905270 MtrunA17_Chr7g0217231 59.322 59 22 1 33 89 83 141 2.45e-19 80.5
Msa0905270 MtrunA17_Chr4g0076821 62.069 58 22 0 37 94 112 169 3.62e-19 80.5
Msa0905270 MtrunA17_Chr5g0412501 53.226 62 29 0 36 97 76 137 8.48e-19 78.2
Msa0905270 MtrunA17_Chr5g0427051 56.667 60 26 0 36 95 56 115 1.23e-18 77.8
Msa0905270 MtrunA17_Chr5g0404271 59.615 52 21 0 38 89 99 150 8.19e-18 75.9
Msa0905270 MtrunA17_Chr6g0453231 61.111 54 19 1 38 89 91 144 5.47e-17 73.9
Msa0905270 MtrunA17_Chr6g0479901 51.667 60 28 1 38 96 19 78 1.58e-15 68.2
Msa0905270 MtrunA17_Chr8g0357721 50.000 38 19 0 47 84 14 51 2.02e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905270 AT3G28917.1 59.596 99 25 3 18 101 1 99 1.58e-31 107
Msa0905270 AT1G18835.1 60.000 90 26 3 18 100 1 87 9.26e-30 102
Msa0905270 AT1G74660.1 50.495 101 31 2 18 99 2 102 1.33e-27 97.4
Msa0905270 AT1G74660.2 50.562 89 27 1 18 89 2 90 9.79e-26 92.4
Msa0905270 AT4G24660.1 66.071 56 19 0 36 91 47 102 4.65e-23 89.0
Msa0905270 AT4G24660.2 66.071 56 19 0 36 91 47 102 5.90e-23 89.0
Msa0905270 AT2G02540.2 55.224 67 30 0 23 89 72 138 4.14e-22 88.2
Msa0905270 AT2G02540.1 55.224 67 30 0 23 89 72 138 4.14e-22 88.2
Msa0905270 AT1G14440.1 55.072 69 29 1 32 98 84 152 1.14e-21 87.0
Msa0905270 AT1G14440.2 55.072 69 29 1 32 98 84 152 1.14e-21 87.0
Msa0905270 AT5G15210.1 60.938 64 23 1 34 95 52 115 8.77e-21 84.0
Msa0905270 AT3G50890.1 66.038 53 18 0 36 88 58 110 5.09e-20 81.6
Msa0905270 AT1G75240.1 59.677 62 25 0 33 94 71 132 9.03e-20 81.6
Msa0905270 AT2G18350.1 58.209 67 25 1 36 99 80 146 1.19e-19 80.9
Msa0905270 AT5G65410.1 60.000 55 22 0 34 88 71 125 3.82e-19 79.7
Msa0905270 AT1G69600.1 64.815 54 17 1 36 87 29 82 2.39e-18 77.0
Msa0905270 AT5G60480.1 59.259 54 20 1 35 86 34 87 4.91e-16 70.5
Msa0905270 AT3G28920.1 59.375 64 24 1 36 97 50 113 5.27e-16 71.6
Msa0905270 AT5G42780.1 60.784 51 18 1 38 88 64 112 3.17e-15 68.9
Msa0905270 AT5G39760.1 49.333 75 36 1 23 95 41 115 6.66e-15 68.9
Msa0905270 AT1G14687.1 48.571 70 27 4 33 102 2 62 7.80e-15 66.2

Find 17 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATTCATGATATGATTT+TGG 0.175412 6_2:+3317007 Msa0905270:three_prime_UTR
CAAAGAAGTGTTGTGAAATA+TGG 0.276912 6_2:+3316596 Msa0905270:CDS
TGAAGGTTGATTTATGTAAA+GGG 0.355622 6_2:+3316972 Msa0905270:three_prime_UTR
TATTACAAGAATACCATATA+AGG 0.376214 6_2:-3316830 None:intergenic
GTTGGAGGTTATGCTGTTGA+TGG 0.403038 6_2:+3316647 Msa0905270:CDS
TTGAAGGTTGATTTATGTAA+AGG 0.414547 6_2:+3316971 Msa0905270:three_prime_UTR
TTTGTACCTTGTTCACTACT+TGG 0.415225 6_2:-3316686 None:intergenic
TATTTCACAACACTTCTTTG+TGG 0.421230 6_2:-3316593 None:intergenic
AGTAGTGAACAAGGTACAAA+TGG 0.484103 6_2:+3316689 Msa0905270:CDS
TTATATATATAAGACTTGTC+TGG 0.501413 6_2:+3316872 Msa0905270:three_prime_UTR
AGTTCTTCACCTCACTCAAA+TGG 0.507969 6_2:+3316782 Msa0905270:CDS
TCTCTCACTTGTGCTGCTTG+TGG 0.516521 6_2:+3316713 Msa0905270:CDS
AAGAATCATGCAGCTAATGT+TGG 0.517780 6_2:+3316629 Msa0905270:CDS
ATAAAGAGAGAAGAAGAATG+AGG 0.564536 6_2:+3316537 Msa0905270:CDS
AATCATGCAGCTAATGTTGG+AGG 0.576991 6_2:+3316632 Msa0905270:CDS
TTTCAAGTACCATTTGAGTG+AGG 0.642570 6_2:-3316791 None:intergenic
TTCATGCCAAGTAGTGAACA+AGG 0.658987 6_2:+3316680 Msa0905270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTTTTAAAAA+AGG + chr6_2:3315523-3315542 Msa0905270:intron 0.0%
!!! AATTTTTTTTTTTTTAAAAA+AGG + chr6_2:3315523-3315542 Msa0905270:intron 0.0%
!!! AAGATATGATTTTTTTTTTA+AGG + chr6_2:3315258-3315277 Msa0905270:intron 10.0%
!!! TTTTATCAATAAAAAAGAAT+TGG - chr6_2:3315780-3315799 None:intergenic 10.0%
!!! TAAATATAATTTGCATTTTT+TGG + chr6_2:3315936-3315955 Msa0905270:intron 10.0%
!! TTAAATTATTGATAAATAAG+TGG - chr6_2:3316224-3316243 None:intergenic 10.0%
!!! ATGAATTTTTTTTAAAGTTT+TGG - chr6_2:3316481-3316500 None:intergenic 10.0%
!!! AAGATATGATTTTTTTTTTA+AGG + chr6_2:3315258-3315277 Msa0905270:intron 10.0%
!!! TTTTATCAATAAAAAAGAAT+TGG - chr6_2:3315780-3315799 None:intergenic 10.0%
!!! TAAATATAATTTGCATTTTT+TGG + chr6_2:3315936-3315955 Msa0905270:intron 10.0%
!! TTAAATTATTGATAAATAAG+TGG - chr6_2:3316224-3316243 None:intergenic 10.0%
!!! ATGAATTTTTTTTAAAGTTT+TGG - chr6_2:3316481-3316500 None:intergenic 10.0%
!!! TTTTTTTACTATTTTGTACT+TGG + chr6_2:3315044-3315063 Msa0905270:intron 15.0%
!! ATTTGTAATCCATTTATTAT+TGG + chr6_2:3315414-3315433 Msa0905270:intron 15.0%
!!! TATTTTGAACCAATAATAAA+TGG - chr6_2:3315426-3315445 None:intergenic 15.0%
!! TTATTAAACTTACTAATGAT+TGG - chr6_2:3315456-3315475 None:intergenic 15.0%
!! AATAAAATAAATAATCCAAC+TGG + chr6_2:3315471-3315490 Msa0905270:intron 15.0%
!!! TTACTTATAAAAGTATTCAA+AGG - chr6_2:3315554-3315573 None:intergenic 15.0%
!!! TTTATGTTGCTATTTATTAT+AGG + chr6_2:3315672-3315691 Msa0905270:intron 15.0%
!!! TTTTATAACTATACCTTATA+TGG + chr6_2:3316817-3316836 Msa0905270:three_prime_UTR 15.0%
!!! TTTTTTTACTATTTTGTACT+TGG + chr6_2:3315044-3315063 Msa0905270:intron 15.0%
!! ATTTGTAATCCATTTATTAT+TGG + chr6_2:3315414-3315433 Msa0905270:intron 15.0%
!!! TATTTTGAACCAATAATAAA+TGG - chr6_2:3315426-3315445 None:intergenic 15.0%
!! TTATTAAACTTACTAATGAT+TGG - chr6_2:3315456-3315475 None:intergenic 15.0%
!! AATAAAATAAATAATCCAAC+TGG + chr6_2:3315471-3315490 Msa0905270:intron 15.0%
!!! TTACTTATAAAAGTATTCAA+AGG - chr6_2:3315554-3315573 None:intergenic 15.0%
!!! TTTATGTTGCTATTTATTAT+AGG + chr6_2:3315672-3315691 Msa0905270:intron 15.0%
!!! TTTTATAACTATACCTTATA+TGG + chr6_2:3316817-3316836 Msa0905270:three_prime_UTR 15.0%
!! TTTCTTTCTACATTAATACT+TGG + chr6_2:3315219-3315238 Msa0905270:intron 20.0%
!!! TAACATTCCTTTTTAACTTT+TGG + chr6_2:3315356-3315375 Msa0905270:intron 20.0%
!! ACTTCAAACAAAGTTAAAAT+TGG - chr6_2:3315632-3315651 None:intergenic 20.0%
!! TCAATAAAAAAGAATTGGAA+CGG - chr6_2:3315775-3315794 None:intergenic 20.0%
!!! GAAAGTAAAATCTTGTTTAA+AGG + chr6_2:3315803-3315822 Msa0905270:intron 20.0%
!! AACAACTCTTGAAAAATATA+AGG + chr6_2:3315868-3315887 Msa0905270:intron 20.0%
!! TGAAAAATATAAGGATGATT+TGG + chr6_2:3315877-3315896 Msa0905270:intron 20.0%
!! ATGAGAATTAATGAGAAAAA+TGG + chr6_2:3315910-3315929 Msa0905270:intron 20.0%
!! ACAAAAAAAGCAATTATACT+CGG - chr6_2:3315964-3315983 None:intergenic 20.0%
!! TGAGAATGTGTATTTATATA+TGG - chr6_2:3316271-3316290 None:intergenic 20.0%
!! TATTACAAGAATACCATATA+AGG - chr6_2:3316833-3316852 None:intergenic 20.0%
!! TTATATATATAAGACTTGTC+TGG + chr6_2:3316872-3316891 Msa0905270:three_prime_UTR 20.0%
!!! ATATTTTTATGTGGTTTTGA+AGG + chr6_2:3316955-3316974 Msa0905270:three_prime_UTR 20.0%
!! ATTTATGTAAAGGGTAAAAA+AGG + chr6_2:3316981-3317000 Msa0905270:three_prime_UTR 20.0%
!!! AGTAATTCATGATATGATTT+TGG + chr6_2:3317007-3317026 Msa0905270:three_prime_UTR 20.0%
!! TTTCTTTCTACATTAATACT+TGG + chr6_2:3315219-3315238 Msa0905270:intron 20.0%
!!! TAACATTCCTTTTTAACTTT+TGG + chr6_2:3315356-3315375 Msa0905270:intron 20.0%
!! ACTTCAAACAAAGTTAAAAT+TGG - chr6_2:3315632-3315651 None:intergenic 20.0%
!! TCAATAAAAAAGAATTGGAA+CGG - chr6_2:3315775-3315794 None:intergenic 20.0%
!!! GAAAGTAAAATCTTGTTTAA+AGG + chr6_2:3315803-3315822 Msa0905270:intron 20.0%
!! AACAACTCTTGAAAAATATA+AGG + chr6_2:3315868-3315887 Msa0905270:intron 20.0%
!! TGAAAAATATAAGGATGATT+TGG + chr6_2:3315877-3315896 Msa0905270:intron 20.0%
!! ATGAGAATTAATGAGAAAAA+TGG + chr6_2:3315910-3315929 Msa0905270:intron 20.0%
!! ACAAAAAAAGCAATTATACT+CGG - chr6_2:3315964-3315983 None:intergenic 20.0%
!! TGAGAATGTGTATTTATATA+TGG - chr6_2:3316271-3316290 None:intergenic 20.0%
!! TATTACAAGAATACCATATA+AGG - chr6_2:3316833-3316852 None:intergenic 20.0%
!! TTATATATATAAGACTTGTC+TGG + chr6_2:3316872-3316891 Msa0905270:three_prime_UTR 20.0%
!!! ATATTTTTATGTGGTTTTGA+AGG + chr6_2:3316955-3316974 Msa0905270:three_prime_UTR 20.0%
!! ATTTATGTAAAGGGTAAAAA+AGG + chr6_2:3316981-3317000 Msa0905270:three_prime_UTR 20.0%
!!! AGTAATTCATGATATGATTT+TGG + chr6_2:3317007-3317026 Msa0905270:three_prime_UTR 20.0%
!! TTTCTAGCCAAAAGTTAAAA+AGG - chr6_2:3315366-3315385 None:intergenic 25.0%
! GTTAAAATTGGAGATAACAA+TGG - chr6_2:3315620-3315639 None:intergenic 25.0%
!! ATTATAGGTACAAAGTATCA+AGG + chr6_2:3315687-3315706 Msa0905270:intron 25.0%
!! TTATAGGTACAAAGTATCAA+GGG + chr6_2:3315688-3315707 Msa0905270:intron 25.0%
!! GATTAGCCATATACTTTAAA+GGG - chr6_2:3315733-3315752 None:intergenic 25.0%
!! TGATTAGCCATATACTTTAA+AGG - chr6_2:3315734-3315753 None:intergenic 25.0%
! CAATAAAAAAGAATTGGAAC+GGG - chr6_2:3315774-3315793 None:intergenic 25.0%
!! AAAATATAAGGATGATTTGG+TGG + chr6_2:3315880-3315899 Msa0905270:intron 25.0%
! TTCATGTAAGATTTGATCAA+TGG - chr6_2:3316089-3316108 None:intergenic 25.0%
!! ATACACATTCTCACATTTTT+AGG + chr6_2:3316278-3316297 Msa0905270:intron 25.0%
!! TACACATTCTCACATTTTTA+GGG + chr6_2:3316279-3316298 Msa0905270:intron 25.0%
! TCCTTCTATACAAGTTTATA+TGG + chr6_2:3316443-3316462 Msa0905270:intron 25.0%
! ACCATATAAACTTGTATAGA+AGG - chr6_2:3316447-3316466 None:intergenic 25.0%
! AAATTCATCATATTCTTTGC+AGG + chr6_2:3316493-3316512 Msa0905270:intron 25.0%
! AATTCATCATATTCTTTGCA+GGG + chr6_2:3316494-3316513 Msa0905270:intron 25.0%
!! TTGAAGGTTGATTTATGTAA+AGG + chr6_2:3316971-3316990 Msa0905270:three_prime_UTR 25.0%
!! TGAAGGTTGATTTATGTAAA+GGG + chr6_2:3316972-3316991 Msa0905270:three_prime_UTR 25.0%
!! TTTCTAGCCAAAAGTTAAAA+AGG - chr6_2:3315366-3315385 None:intergenic 25.0%
! GTTAAAATTGGAGATAACAA+TGG - chr6_2:3315620-3315639 None:intergenic 25.0%
!! ATTATAGGTACAAAGTATCA+AGG + chr6_2:3315687-3315706 Msa0905270:intron 25.0%
!! TTATAGGTACAAAGTATCAA+GGG + chr6_2:3315688-3315707 Msa0905270:intron 25.0%
!! GATTAGCCATATACTTTAAA+GGG - chr6_2:3315733-3315752 None:intergenic 25.0%
!! TGATTAGCCATATACTTTAA+AGG - chr6_2:3315734-3315753 None:intergenic 25.0%
! CAATAAAAAAGAATTGGAAC+GGG - chr6_2:3315774-3315793 None:intergenic 25.0%
!! AAAATATAAGGATGATTTGG+TGG + chr6_2:3315880-3315899 Msa0905270:intron 25.0%
! TTCATGTAAGATTTGATCAA+TGG - chr6_2:3316089-3316108 None:intergenic 25.0%
!! ATACACATTCTCACATTTTT+AGG + chr6_2:3316278-3316297 Msa0905270:intron 25.0%
!! TACACATTCTCACATTTTTA+GGG + chr6_2:3316279-3316298 Msa0905270:intron 25.0%
! TCCTTCTATACAAGTTTATA+TGG + chr6_2:3316443-3316462 Msa0905270:intron 25.0%
! ACCATATAAACTTGTATAGA+AGG - chr6_2:3316447-3316466 None:intergenic 25.0%
! AAATTCATCATATTCTTTGC+AGG + chr6_2:3316493-3316512 Msa0905270:intron 25.0%
! AATTCATCATATTCTTTGCA+GGG + chr6_2:3316494-3316513 Msa0905270:intron 25.0%
!! TTGAAGGTTGATTTATGTAA+AGG + chr6_2:3316971-3316990 Msa0905270:three_prime_UTR 25.0%
!! TGAAGGTTGATTTATGTAAA+GGG + chr6_2:3316972-3316991 Msa0905270:three_prime_UTR 25.0%
ATCATAATTACAGTTCCAGT+TGG - chr6_2:3315489-3315508 None:intergenic 30.0%
! AGGGCATTAGTAATTGATAA+AGG - chr6_2:3315714-3315733 None:intergenic 30.0%
!! CTAATGCCCTTTAAAGTATA+TGG + chr6_2:3315724-3315743 Msa0905270:intron 30.0%
! ATATGGCTAATCATCTTTTG+TGG + chr6_2:3315741-3315760 Msa0905270:intron 30.0%
ATGTAAGATTTGATCAATGG+TGG - chr6_2:3316086-3316105 None:intergenic 30.0%
!! GTGATTATGAGCTTTATTGT+AGG + chr6_2:3316150-3316169 Msa0905270:intron 30.0%
TATGAAAAGTGATTATGACC+TGG + chr6_2:3316196-3316215 Msa0905270:intron 30.0%
!!! ATTCTCACATTTTTAGGGTT+AGG + chr6_2:3316284-3316303 Msa0905270:intron 30.0%
!!! TTCTCACATTTTTAGGGTTA+GGG + chr6_2:3316285-3316304 Msa0905270:intron 30.0%
ATTAAATAGAGAGAGAGAGA+GGG - chr6_2:3316422-3316441 None:intergenic 30.0%
ATAAAGAGAGAAGAAGAATG+AGG + chr6_2:3316537-3316556 Msa0905270:CDS 30.0%
TATTTCACAACACTTCTTTG+TGG - chr6_2:3316596-3316615 None:intergenic 30.0%
!! CAAAGAAGTGTTGTGAAATA+TGG + chr6_2:3316596-3316615 Msa0905270:CDS 30.0%
ATCATAATTACAGTTCCAGT+TGG - chr6_2:3315489-3315508 None:intergenic 30.0%
! AGGGCATTAGTAATTGATAA+AGG - chr6_2:3315714-3315733 None:intergenic 30.0%
!! CTAATGCCCTTTAAAGTATA+TGG + chr6_2:3315724-3315743 Msa0905270:intron 30.0%
! ATATGGCTAATCATCTTTTG+TGG + chr6_2:3315741-3315760 Msa0905270:intron 30.0%
ATGTAAGATTTGATCAATGG+TGG - chr6_2:3316086-3316105 None:intergenic 30.0%
!! GTGATTATGAGCTTTATTGT+AGG + chr6_2:3316150-3316169 Msa0905270:intron 30.0%
TATGAAAAGTGATTATGACC+TGG + chr6_2:3316196-3316215 Msa0905270:intron 30.0%
!!! ATTCTCACATTTTTAGGGTT+AGG + chr6_2:3316284-3316303 Msa0905270:intron 30.0%
!!! TTCTCACATTTTTAGGGTTA+GGG + chr6_2:3316285-3316304 Msa0905270:intron 30.0%
ATTAAATAGAGAGAGAGAGA+GGG - chr6_2:3316422-3316441 None:intergenic 30.0%
ATAAAGAGAGAAGAAGAATG+AGG + chr6_2:3316537-3316556 Msa0905270:CDS 30.0%
TATTTCACAACACTTCTTTG+TGG - chr6_2:3316596-3316615 None:intergenic 30.0%
!! CAAAGAAGTGTTGTGAAATA+TGG + chr6_2:3316596-3316615 Msa0905270:CDS 30.0%
TCATACACACAAGTAAAGAG+TGG - chr6_2:3315582-3315601 None:intergenic 35.0%
ATTGATAAATAAGTGGAGCC+AGG - chr6_2:3316217-3316236 None:intergenic 35.0%
GATTAAATAGAGAGAGAGAG+AGG - chr6_2:3316423-3316442 None:intergenic 35.0%
!! TATTCTTTGCAGGGTTTTGA+AGG + chr6_2:3316503-3316522 Msa0905270:intron 35.0%
AAGAATCATGCAGCTAATGT+TGG + chr6_2:3316629-3316648 Msa0905270:CDS 35.0%
TTTGTACCTTGTTCACTACT+TGG - chr6_2:3316689-3316708 None:intergenic 35.0%
AGTAGTGAACAAGGTACAAA+TGG + chr6_2:3316689-3316708 Msa0905270:CDS 35.0%
! TTTCAAGTACCATTTGAGTG+AGG - chr6_2:3316794-3316813 None:intergenic 35.0%
TCATACACACAAGTAAAGAG+TGG - chr6_2:3315582-3315601 None:intergenic 35.0%
ATTGATAAATAAGTGGAGCC+AGG - chr6_2:3316217-3316236 None:intergenic 35.0%
GATTAAATAGAGAGAGAGAG+AGG - chr6_2:3316423-3316442 None:intergenic 35.0%
!! TATTCTTTGCAGGGTTTTGA+AGG + chr6_2:3316503-3316522 Msa0905270:intron 35.0%
AAGAATCATGCAGCTAATGT+TGG + chr6_2:3316629-3316648 Msa0905270:CDS 35.0%
TTTGTACCTTGTTCACTACT+TGG - chr6_2:3316689-3316708 None:intergenic 35.0%
AGTAGTGAACAAGGTACAAA+TGG + chr6_2:3316689-3316708 Msa0905270:CDS 35.0%
! TTTCAAGTACCATTTGAGTG+AGG - chr6_2:3316794-3316813 None:intergenic 35.0%
GGAACTCATGTAGCTCATAT+TGG + chr6_2:3315824-3315843 Msa0905270:intron 40.0%
!!! AGGGTTTTGAAGGAAGAAGA+AGG + chr6_2:3316513-3316532 Msa0905270:intron 40.0%
AATCATGCAGCTAATGTTGG+AGG + chr6_2:3316632-3316651 Msa0905270:CDS 40.0%
TTCATGCCAAGTAGTGAACA+AGG + chr6_2:3316680-3316699 Msa0905270:CDS 40.0%
AGTTCTTCACCTCACTCAAA+TGG + chr6_2:3316782-3316801 Msa0905270:CDS 40.0%
GGAACTCATGTAGCTCATAT+TGG + chr6_2:3315824-3315843 Msa0905270:intron 40.0%
!!! AGGGTTTTGAAGGAAGAAGA+AGG + chr6_2:3316513-3316532 Msa0905270:intron 40.0%
AATCATGCAGCTAATGTTGG+AGG + chr6_2:3316632-3316651 Msa0905270:CDS 40.0%
TTCATGCCAAGTAGTGAACA+AGG + chr6_2:3316680-3316699 Msa0905270:CDS 40.0%
AGTTCTTCACCTCACTCAAA+TGG + chr6_2:3316782-3316801 Msa0905270:CDS 40.0%
AGAGAGAGAGAGAGAGACAA+AGG - chr6_2:3316340-3316359 None:intergenic 45.0%
AAATAGAGAGAGAGAGAGGG+AGG - chr6_2:3316419-3316438 None:intergenic 45.0%
GTTGGAGGTTATGCTGTTGA+TGG + chr6_2:3316647-3316666 Msa0905270:CDS 45.0%
AGAGAGAGAGAGAGAGACAA+AGG - chr6_2:3316340-3316359 None:intergenic 45.0%
AAATAGAGAGAGAGAGAGGG+AGG - chr6_2:3316419-3316438 None:intergenic 45.0%
GTTGGAGGTTATGCTGTTGA+TGG + chr6_2:3316647-3316666 Msa0905270:CDS 45.0%
!! TAAAAAAAAAAAAATTAAAC+TGG - chr6_2:3315519-3315538 None:intergenic 5.0%
!!! TATATATATATATTTTTATG+TGG + chr6_2:3316946-3316965 Msa0905270:three_prime_UTR 5.0%
!! TAAAAAAAAAAAAATTAAAC+TGG - chr6_2:3315519-3315538 None:intergenic 5.0%
!!! TATATATATATATTTTTATG+TGG + chr6_2:3316946-3316965 Msa0905270:three_prime_UTR 5.0%
AGAGAGAGAGACAAAGGAGG+AGG - chr6_2:3316334-3316353 None:intergenic 50.0%
GAGAGAGAGAGAGACAAAGG+AGG - chr6_2:3316337-3316356 None:intergenic 50.0%
!! TCTCTCACTTGTGCTGCTTG+TGG + chr6_2:3316713-3316732 Msa0905270:CDS 50.0%
AGAGAGAGAGACAAAGGAGG+AGG - chr6_2:3316334-3316353 None:intergenic 50.0%
GAGAGAGAGAGAGACAAAGG+AGG - chr6_2:3316337-3316356 None:intergenic 50.0%
!! TCTCTCACTTGTGCTGCTTG+TGG + chr6_2:3316713-3316732 Msa0905270:CDS 50.0%
AGAGAGAGAGAGAGGGAGGA+GGG - chr6_2:3316415-3316434 None:intergenic 55.0%
TAGAGAGAGAGAGAGGGAGG+AGG - chr6_2:3316416-3316435 None:intergenic 55.0%
AGAGAGAGAGAGAGGGAGGA+GGG - chr6_2:3316415-3316434 None:intergenic 55.0%
TAGAGAGAGAGAGAGGGAGG+AGG - chr6_2:3316416-3316435 None:intergenic 55.0%
AGAGAGAGAGGGAGGAGGGA+GGG - chr6_2:3316411-3316430 None:intergenic 60.0%
AGAGAGAGAGGGAGGAGGGA+GGG - chr6_2:3316411-3316430 None:intergenic 60.0%
AGAGAGGGAGGAGGGAGGGA+GGG - chr6_2:3316407-3316426 None:intergenic 65.0%
GAGAGAGAGAGGGAGGAGGG+AGG - chr6_2:3316412-3316431 None:intergenic 65.0%
AGAGAGGGAGGAGGGAGGGA+GGG - chr6_2:3316407-3316426 None:intergenic 65.0%
GAGAGAGAGAGGGAGGAGGG+AGG - chr6_2:3316412-3316431 None:intergenic 65.0%
AGGGAGGAGGGAGGGAGGGA+GGG - chr6_2:3316403-3316422 None:intergenic 70.0%
GAGAGAGGGAGGAGGGAGGG+AGG - chr6_2:3316408-3316427 None:intergenic 70.0%
AGGGAGGAGGGAGGGAGGGA+GGG - chr6_2:3316403-3316422 None:intergenic 70.0%
GAGAGAGGGAGGAGGGAGGG+AGG - chr6_2:3316408-3316427 None:intergenic 70.0%
GAGGGAGGAGGGAGGGAGGG+AGG - chr6_2:3316404-3316423 None:intergenic 75.0%
GAGGGAGGAGGGAGGGAGGG+AGG - chr6_2:3316404-3316423 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3315028 3317053 3315028 ID=Msa0905270;Name=Msa0905270
chr6_2 mRNA 3315028 3317053 3315028 ID=Msa0905270-mRNA-1;Parent=Msa0905270;Name=Msa0905270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.33|0.33|0|0.33|3|242|102
chr6_2 exon 3315028 3315032 3315028 ID=Msa0905270-mRNA-1:exon:1012;Parent=Msa0905270-mRNA-1
chr6_2 exon 3315694 3315700 3315694 ID=Msa0905270-mRNA-1:exon:1013;Parent=Msa0905270-mRNA-1
chr6_2 exon 3316515 3317053 3316515 ID=Msa0905270-mRNA-1:exon:1014;Parent=Msa0905270-mRNA-1
chr6_2 CDS 3315028 3315032 3315028 ID=Msa0905270-mRNA-1:cds;Parent=Msa0905270-mRNA-1
chr6_2 CDS 3315694 3315700 3315694 ID=Msa0905270-mRNA-1:cds;Parent=Msa0905270-mRNA-1
chr6_2 CDS 3316515 3316811 3316515 ID=Msa0905270-mRNA-1:cds;Parent=Msa0905270-mRNA-1
chr6_2 three_prime_UTR 3316812 3317053 3316812 ID=Msa0905270-mRNA-1:three_prime_utr;Parent=Msa0905270-mRNA-1
Gene Sequence

>Msa0905270

ATGAGGTACAAAGGTTTTGAAGGAAGAAGAAGGTATAAAGAGAGAAGAAGAATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATCCACAAAGAAGTGTTGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTCATGCCAAGTAGTGAACAAGGTACAAATGGTTCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAAGTTGAAGTTGTTTCTGAGAGTTCTTCACCTCACTCAAATGGTACTTGA
Protein sequence

>Msa0905270

MRYKGFEGRRRYKERRRMRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSSEQGTNGSLTCAACGCHRNFHKREVEVVSESSSPHSNGT*