AlfalfaGEDB | Msa0872240

M. sativa cultivar zhongmu-4 / Msa0872240

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542
PFAM: PF01095.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872240	XP_003618540.1	92.405	316	8	1	1	300	1	316	0.0	609

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872240	sp\|Q9LVQ0\|PME31_ARATH	71.795	312	72	1	5	300	6	317	1.39e-171	480

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872240	G7KKY7	92.405	316	8	1	1	300	1	316	0.0	609

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0245350	Msa0872240	0.801965	7.019531e-49	-8.615850e-47
Msa0872240	Msa0905700	0.822534	2.250470e-53	-8.615850e-47
Msa0872240	Msa1397140	0.955679	1.737951e-113	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872240	MtrunA17_Chr6g0453551	92.405	316	8	1	1	300	1	316	0.0	609
Msa0872240	MtrunA17_Chr7g0217941	75.000	316	63	1	1	300	1	316	0.0	508
Msa0872240	MtrunA17_Chr6g0487101	42.574	303	145	7	1	280	79	375	3.13e-75	235
Msa0872240	MtrunA17_Chr8g0389771	40.767	287	148	4	14	280	88	372	2.07e-74	233
Msa0872240	MtrunA17_Chr1g0194311	39.456	294	155	6	6	280	74	363	4.77e-64	206
Msa0872240	MtrunA17_Chr7g0258341	39.145	304	145	5	6	280	90	382	1.58e-62	202
Msa0872240	MtrunA17_Chr5g0446301	38.966	290	152	7	12	280	67	352	1.36e-58	191
Msa0872240	MtrunA17_Chr5g0399221	35.621	306	169	7	5	289	62	360	2.39e-57	188
Msa0872240	MtrunA17_Chr8g0345281	33.882	304	161	5	6	279	279	572	5.67e-55	187
Msa0872240	MtrunA17_Chr4g0070051	35.065	308	150	9	5	282	53	340	2.88e-54	180

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872240	AT3G29090.1	71.795	312	72	1	5	300	6	317	1.42e-172	480
Msa0872240	AT5G19730.1	43.289	298	144	5	4	280	83	376	5.89e-76	237
Msa0872240	AT2G36700.1	39.088	307	152	5	4	288	40	333	3.94e-66	210
Msa0872240	AT2G36710.1	38.387	310	153	6	4	288	89	385	3.79e-65	210
Msa0872240	AT5G47500.1	36.306	314	164	7	5	293	60	362	3.73e-63	203
Msa0872240	AT2G21610.2	35.548	301	159	6	5	288	55	337	8.45e-62	200
Msa0872240	AT2G21610.1	35.548	301	159	6	5	288	50	332	9.46e-62	199
Msa0872240	AT1G05310.1	36.393	305	156	4	6	282	91	385	2.55e-58	192
Msa0872240	AT5G07430.1	35.254	295	160	4	5	279	66	349	6.62e-58	190
Msa0872240	AT3G17060.1	35.048	311	164	7	6	291	46	343	2.03e-56	186

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Find 68 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCCACATGAAAAGAC+TGG	0.568295	6_1:-7652386	Msa0872240:CDS
AAATTACAGGTGTTTCGGAC+CGG	0.462981	6_1:-7651739	Msa0872240:intron
AATTACAGGTGTTTCGGACC+GGG	0.506848	6_1:-7651738	Msa0872240:intron
ACAATTGCAGGTTCCTTGGG+TGG	0.537665	6_1:-7652655	Msa0872240:CDS
ACACACGTCGGACGATCATA+AGG	0.423759	6_1:-7653683	Msa0872240:CDS
ACAGTGTCACAAAATGGAAC+AGG	0.476089	6_1:-7653753	Msa0872240:CDS
ACCTTGGCTTGCTCAAAGAA+TGG	0.514250	6_1:-7651616	Msa0872240:CDS
ACGATCATAAGGATATCTCC+GGG	0.609422	6_1:-7653672	Msa0872240:CDS
AGCAGAATATGGAATCCTTA+TGG	0.423601	6_1:+7651593	None:intergenic
AGCCTGCAGGTTGGAATAAT+TGG	0.131021	6_1:-7651956	Msa0872240:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAACTATGAAATGTGTGTA+CGG	-	chr6_1:7651692-7651711	Msa0872240:CDS	30.0%
TATATCATAGTGTGTTCTGA+TGG	-	chr6_1:7652001-7652020	Msa0872240:CDS	30.0%
CCTCAAAATCTTTGATATTG+AGG	-	chr6_1:7652088-7652107	Msa0872240:intron	30.0%
CTCTTGATGTATTTGTTCAT+AGG	-	chr6_1:7652555-7652574	Msa0872240:intron	30.0%
TTTGTTCATAGGTTAGATGT+TGG	-	chr6_1:7652566-7652585	Msa0872240:intron	30.0%
GTTGGAACAAGAATTTGAAA+AGG	-	chr6_1:7652584-7652603	Msa0872240:intron	30.0%
TTGTTATATTGAAGGAAGTG+TGG	-	chr6_1:7652678-7652697	Msa0872240:CDS	30.0%
CACTAAAAAAACATAGACAC+GGG	-	chr6_1:7652868-7652887	Msa0872240:intron	30.0%
CCAGTAATAGTTTGAGAAAA+TGG	-	chr6_1:7652918-7652937	Msa0872240:intron	30.0%
TGATATCCAACATGTATCAT+TGG	+	chr6_1:7652990-7653009	None:intergenic	30.0%

Showing 1 to 10 of 150 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	7651347	7653848	7651347	ID=Msa0872240;Name=Msa0872240
chr6_1	mRNA	7651347	7653848	7651347	ID=Msa0872240-mRNA-1;Parent=Msa0872240;Name=Msa0872240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=55\|0.8\|0.66\|1\|1\|1\|6\|243\|300
chr6_1	exon	7651347	7651752	7651347	ID=Msa0872240-mRNA-1:exon:2327;Parent=Msa0872240-mRNA-1
chr6_1	exon	7651912	7652037	7651912	ID=Msa0872240-mRNA-1:exon:2326;Parent=Msa0872240-mRNA-1
chr6_1	exon	7652371	7652558	7652371	ID=Msa0872240-mRNA-1:exon:2325;Parent=Msa0872240-mRNA-1
chr6_1	exon	7652652	7652729	7652652	ID=Msa0872240-mRNA-1:exon:2324;Parent=Msa0872240-mRNA-1
chr6_1	exon	7653196	7653300	7653196	ID=Msa0872240-mRNA-1:exon:2323;Parent=Msa0872240-mRNA-1
chr6_1	exon	7653551	7653848	7653551	ID=Msa0872240-mRNA-1:exon:2322;Parent=Msa0872240-mRNA-1
chr6_1	five_prime_UTR	7653794	7653848	7653794	ID=Msa0872240-mRNA-1:five_prime_utr;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7653551	7653793	7653551	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7653196	7653300	7653196	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7652652	7652729	7652652	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7652371	7652558	7652371	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7651912	7652037	7651912	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	CDS	7651590	7651752	7651590	ID=Msa0872240-mRNA-1:cds;Parent=Msa0872240-mRNA-1
chr6_1	three_prime_UTR	7651347	7651589	7651347	ID=Msa0872240-mRNA-1:three_prime_utr;Parent=Msa0872240-mRNA-1

Gene Sequence

>Msa0872240

ATGGCACCTTTTGTATTGACAGTGTCACAAAATGGAACAGGAAACTACAGAACAGTACAAGAAGCTATTGATGCAGTGCCACTCAGAAACACACGTCGGACGATCATAAGGATATCTCCGGGAATCTACCGGCAACCACTTTACGTAGCAAAGACTAAGAATTTCATCACTTTTGTTGGTTTGTGTCCTGAAGATACTATTCTCACATGGAACAACACTGCCAATAAAATTGATCACCATCAAAGTTCTAAGGTGATAGGGAATGGGACTTTTGGTTGTGGAAGTACGATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATTACTTTTGAGAATTTTTCTCCTGAGGGTTCAGGGCAAGCAGTAGCAGTTAGAGTAACAGCAGATAGATGTGCATTTTACAATTGCAGGTTCCTTGGGTGGCAGGACACACTTTATTTACATTCTGGCAAACAATATTTAAGAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGCAATAGCACTGCACTCTTGGAACATTGTCATATCCACTGCAAGTCTGCTGGGTTCATAACTGCTCAGAGTAGAAAATCTCCACATGAAAAGACTGGTTATGTATTTTTGAGGCAATGGGGACCTTTTGGAAGAGTGGTCTTTGCATTTACTTATATGGATCATTGTATAAAGCCTGCAGGTTGGAATAATTGGGGAAAAGTTGAGAATGAAAAAAGTGCTTGCTTCTATGAACACAGGTGTTTCGGACCGGGTTTTTGTCCCTCGAAACGGGTGAAATGGGCCAGAGTGTTGAAGAATAAAGAAGCTGAGGAGTTTCTCATGCATAGTTTCATTGATCCAGAACCACAAAAACCTTGGCTTGCTCAAAGAATGGCCATAAGGATTCCATATTCTGCTTAG

Protein sequence

>Msa0872240

MAPFVLTVSQNGTGNYRTVQEAIDAVPLRNTRRTIIRISPGIYRQPLYVAKTKNFITFVGLCPEDTILTWNNTANKIDHHQSSKVIGNGTFGCGSTIVEGEDFIAENITFENFSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHSGKQYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGYVFLRQWGPFGRVVFAFTYMDHCIKPAGWNNWGKVENEKSACFYEHRCFGPGFCPSKRVKWARVLKNKEAEEFLMHSFIDPEPQKPWLAQRMAIRIPYSA*