AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905700 MtrunA17_Chr6g0453551 96.519 316 11 0 1 316 1 316 0.0 644
Msa0905700 MtrunA17_Chr7g0217941 79.747 316 64 0 1 316 1 316 0.0 549
Msa0905700 MtrunA17_Chr6g0487101 44.771 306 150 6 1 296 79 375 9.33e-84 257
Msa0905700 MtrunA17_Chr8g0389771 43.448 290 152 4 14 296 88 372 5.34e-83 255
Msa0905700 MtrunA17_Chr1g0194311 42.424 297 158 6 6 296 74 363 5.09e-73 229
Msa0905700 MtrunA17_Chr7g0258341 41.368 307 150 5 6 296 90 382 8.99e-69 219
Msa0905700 MtrunA17_Chr5g0446301 40.956 293 158 7 12 296 67 352 4.38e-65 209
Msa0905700 MtrunA17_Chr4g0070051 38.835 309 153 9 5 298 53 340 4.84e-65 208
Msa0905700 MtrunA17_Chr5g0399221 37.700 313 177 7 5 309 62 364 9.36e-65 208
Msa0905700 MtrunA17_Chr8g0345281 37.171 304 167 5 6 295 279 572 6.72e-64 211
Msa0905700 MtrunA17_Chr8g0351871 37.500 312 160 8 2 298 28 319 9.73e-61 196
Msa0905700 MtrunA17_Chr7g0265201 39.739 307 152 6 2 296 95 380 2.84e-60 197
Msa0905700 MtrunA17_Chr6g0466961 37.584 298 172 4 3 298 36 321 8.24e-60 194
Msa0905700 MtrunA17_Chr4g0037751 34.783 299 174 5 5 295 70 355 3.37e-58 191
Msa0905700 MtrunA17_Chr4g0069881 36.601 306 169 5 5 295 223 518 4.19e-58 195
Msa0905700 MtrunA17_Chr3g0079351 34.650 329 179 9 6 316 215 525 2.28e-57 193
Msa0905700 MtrunA17_Chr4g0018371 36.842 285 157 5 6 277 227 501 4.79e-57 192
Msa0905700 MtrunA17_Chr5g0420831 33.779 299 177 4 5 295 70 355 8.33e-57 187
Msa0905700 MtrunA17_Chr3g0079361 34.650 329 179 10 6 316 215 525 1.12e-56 191
Msa0905700 MtrunA17_Chr2g0294321 36.334 311 170 6 6 304 56 350 1.57e-56 186
Msa0905700 MtrunA17_Chr3g0090091 33.837 331 183 9 4 316 214 526 1.71e-56 191
Msa0905700 MtrunA17_Chr7g0272141 37.037 297 166 5 8 296 243 526 3.97e-56 190
Msa0905700 MtrunA17_Chr3g0079341 34.347 329 180 10 6 316 215 525 7.05e-56 189
Msa0905700 MtrunA17_Chr4g0069841 34.983 303 173 6 8 296 208 500 1.77e-55 188
Msa0905700 MtrunA17_Chr7g0269541 36.601 306 170 7 4 295 244 539 3.11e-55 188
Msa0905700 MtrunA17_Chr1g0192321 35.168 327 179 10 6 316 272 581 1.78e-54 186
Msa0905700 MtrunA17_Chr6g0466951 34.448 299 173 6 6 298 69 350 1.27e-53 179
Msa0905700 MtrunA17_Chr4g0011751 34.194 310 177 7 6 298 176 475 3.05e-53 181
Msa0905700 MtrunA17_Chr2g0302021 34.098 305 177 5 6 296 215 509 1.78e-52 180
Msa0905700 MtrunA17_Chr7g0269511 34.277 318 180 7 5 306 251 555 1.94e-52 181
Msa0905700 MtrunA17_Chr4g0069861 34.768 302 173 6 8 295 209 500 2.30e-52 179
Msa0905700 MtrunA17_Chr1g0192331 34.921 315 177 6 6 302 214 518 3.08e-52 179
Msa0905700 MtrunA17_Chr1g0147051 35.065 308 171 7 5 295 295 590 4.66e-52 181
Msa0905700 MtrunA17_Chr7g0233801 32.459 305 181 6 6 295 242 536 6.45e-52 179
Msa0905700 MtrunA17_Chr4g0011771 34.969 326 177 9 6 316 206 511 9.08e-52 178
Msa0905700 MtrunA17_Chr3g0126771 34.314 306 174 7 6 295 286 580 1.54e-51 179
Msa0905700 MtrunA17_Chr7g0269521 34.277 318 180 8 5 306 249 553 1.57e-51 178
Msa0905700 MtrunA17_Chr1g0175661 34.259 324 178 9 5 305 245 556 1.75e-51 178
Msa0905700 MtrunA17_Chr2g0295551 31.790 324 191 8 8 315 252 561 2.14e-51 178
Msa0905700 MtrunA17_Chr1g0195301 34.877 324 177 10 10 316 247 553 8.07e-51 176
Msa0905700 MtrunA17_Chr1g0195321 34.877 324 177 10 10 316 247 553 8.07e-51 176
Msa0905700 MtrunA17_Chr8g0354901 33.775 302 181 5 6 298 276 567 9.14e-51 176
Msa0905700 MtrunA17_Chr8g0391311 36.620 284 158 5 6 277 230 503 1.12e-50 176
Msa0905700 MtrunA17_Chr7g0272151 35.640 289 162 6 6 280 271 549 2.08e-50 176
Msa0905700 MtrunA17_Chr3g0080381 35.370 311 172 7 1 294 312 610 2.41e-50 176
Msa0905700 MtrunA17_Chr8g0391291 35.563 284 161 5 6 277 228 501 2.73e-50 174
Msa0905700 MtrunA17_Chr3g0080391 33.445 299 180 5 6 295 269 557 3.15e-50 175
Msa0905700 MtrunA17_Chr2g0295531 31.902 326 192 8 6 315 232 543 6.69e-50 175
Msa0905700 MtrunA17_Chr1g0161731 34.967 306 169 6 6 298 48 336 1.35e-49 168
Msa0905700 MtrunA17_Chr1g0195331 34.568 324 178 10 10 316 247 553 1.36e-49 173
Msa0905700 MtrunA17_Chr7g0233831 32.982 285 168 5 6 277 243 517 5.64e-49 171
Msa0905700 MtrunA17_Chr2g0295851 33.225 307 172 8 6 304 55 336 6.61e-49 166
Msa0905700 MtrunA17_Chr8g0354911 35.889 287 158 5 6 277 300 575 7.01e-49 172
Msa0905700 MtrunA17_Chr4g0011791 35.644 303 167 9 6 295 205 492 1.30e-48 169
Msa0905700 MtrunA17_Chr7g0233771 32.353 306 181 7 6 295 242 537 2.06e-48 170
Msa0905700 MtrunA17_Chr1g0195351 34.259 324 177 11 10 316 247 551 6.40e-48 168
Msa0905700 MtrunA17_Chr8g0345211 34.516 310 176 8 8 304 276 571 2.01e-47 167
Msa0905700 MtrunA17_Chr1g0192311 33.007 306 178 8 6 294 257 552 2.30e-47 167
Msa0905700 MtrunA17_Chr1g0192281 33.007 306 178 8 6 294 257 552 2.30e-47 167
Msa0905700 MtrunA17_Chr8g0380581 32.298 322 189 9 8 315 67 373 2.54e-47 163
Msa0905700 MtrunA17_Chr7g0269531 31.611 329 188 8 5 314 251 561 2.81e-47 167
Msa0905700 MtrunA17_Chr7g0270691 35.197 304 174 7 5 295 239 532 8.15e-47 166
Msa0905700 MtrunA17_Chr4g0000121 33.007 306 178 8 6 294 244 539 9.10e-47 166
Msa0905700 MtrunA17_Chr1g0192301 34.286 315 162 11 6 294 262 557 5.73e-46 164
Msa0905700 MtrunA17_Chr5g0437831 32.000 325 185 9 8 315 75 380 5.76e-46 160
Msa0905700 MtrunA17_Chr4g0067601 30.650 323 196 7 8 315 260 569 1.38e-45 162
Msa0905700 MtrunA17_Chr7g0234711 36.752 234 127 6 98 316 40 267 1.42e-45 155
Msa0905700 MtrunA17_Chr5g0440871 32.797 311 170 8 6 306 39 320 1.50e-45 157
Msa0905700 MtrunA17_Chr2g0295541 29.577 355 189 9 8 315 252 592 2.68e-45 162
Msa0905700 MtrunA17_Chr8g0384121 31.329 316 187 4 1 295 241 547 3.78e-45 161
Msa0905700 MtrunA17_Chr2g0334111 30.421 309 184 6 5 302 25 313 1.19e-44 154
Msa0905700 MtrunA17_Chr4g0067611 32.056 287 171 4 6 280 258 532 1.39e-44 160
Msa0905700 MtrunA17_Chr4g0069891 31.579 304 183 6 6 295 285 577 1.98e-44 159
Msa0905700 MtrunA17_Chr1g0195311 35.740 277 149 8 53 316 52 312 3.21e-44 153
Msa0905700 MtrunA17_Chr1g0194091 32.308 325 190 9 8 315 255 566 1.72e-43 157
Msa0905700 MtrunA17_Chr2g0302001 37.611 226 128 3 83 295 195 420 3.23e-43 154
Msa0905700 MtrunA17_Chr1g0194081 31.894 301 183 6 8 296 257 547 4.94e-43 155
Msa0905700 MtrunA17_Chr7g0268241 30.960 323 187 10 6 316 50 348 1.48e-42 150
Msa0905700 MtrunA17_Chr4g0025841 34.274 248 137 4 6 248 37 263 7.76e-42 145
Msa0905700 MtrunA17_Chr3g0129921 30.820 305 182 4 12 295 251 547 1.32e-41 151
Msa0905700 MtrunA17_Chr7g0270651 29.630 324 199 6 7 314 260 570 4.27e-40 147
Msa0905700 MtrunA17_Chr2g0301931 31.522 276 169 5 31 296 12 277 6.04e-39 139
Msa0905700 MtrunA17_Chr7g0270631 30.351 313 192 6 8 304 249 551 6.42e-39 146
Msa0905700 MtrunA17_Chr7g0270631 28.889 315 192 5 8 300 797 1101 1.90e-36 139
Msa0905700 MtrunA17_Chr6g0459781 38.798 183 94 4 3 177 10 182 3.12e-38 134
Msa0905700 MtrunA17_Chr7g0270661 31.173 324 190 10 8 313 261 569 2.19e-37 140
Msa0905700 MtrunA17_Chr7g0270671 31.173 324 190 10 8 313 261 569 2.19e-37 140
Msa0905700 MtrunA17_Chr2g0314691 37.306 193 111 4 111 295 5 195 3.89e-37 132
Msa0905700 MtrunA17_Chr5g0440901 44.118 136 68 2 118 248 10 142 8.69e-34 121
Msa0905700 MtrunA17_Chr7g0265161 35.211 213 115 5 89 296 13 207 2.47e-33 122
Msa0905700 MtrunA17_Chr7g0271381 27.052 329 208 8 6 316 240 554 2.09e-30 120
Msa0905700 MtrunA17_Chr6g0460141 40.441 136 75 2 42 175 13 144 1.02e-26 102
Msa0905700 MtrunA17_Chr5g0440891 31.765 170 99 2 6 175 48 200 5.30e-20 86.3
Msa0905700 MtrunA17_Chr6g0459791 35.772 123 72 3 185 306 2 118 1.32e-18 80.1
Msa0905700 MtrunA17_Chr5g0440881 32.593 135 88 1 164 298 5 136 8.40e-18 79.0
Msa0905700 MtrunA17_Chr5g0437821 32.090 134 79 2 129 250 4 137 1.15e-17 78.2
Msa0905700 MtrunA17_Chr4g0073911 29.474 190 109 6 22 199 24 200 1.03e-16 78.2
Msa0905700 MtrunA17_Chr5g0444991 39.024 82 47 1 174 255 1 79 1.87e-14 67.8
Msa0905700 MtrunA17_Chr2g0299431 29.655 145 89 3 3 145 49 182 1.07e-12 67.4
Msa0905700 MtrunA17_Chr2g0314701 32.743 113 59 3 2 111 67 165 2.56e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905700 AT3G29090.1 76.282 312 74 0 5 316 6 317 0.0 517
Msa0905700 AT5G19730.1 45.847 301 148 5 4 296 83 376 8.77e-85 260
Msa0905700 AT2G36700.1 40.968 310 158 5 4 304 40 333 5.08e-72 226
Msa0905700 AT2G21610.1 38.361 305 163 6 4 304 49 332 3.12e-71 224
Msa0905700 AT2G21610.2 38.487 304 162 6 5 304 55 337 3.88e-71 224
Msa0905700 AT2G36710.1 39.936 313 160 6 4 304 89 385 4.39e-70 223
Msa0905700 AT5G47500.1 38.170 317 170 7 5 309 60 362 2.69e-69 220
Msa0905700 AT1G05310.1 38.312 308 162 4 6 298 91 385 6.03e-66 212
Msa0905700 AT5G07430.1 37.710 297 166 4 5 295 66 349 2.82e-65 209
Msa0905700 AT5G61680.1 36.667 300 170 4 3 295 66 352 1.43e-63 205
Msa0905700 AT1G69940.1 35.759 316 179 6 2 310 63 361 1.52e-63 205
Msa0905700 AT5G55590.1 39.465 299 166 5 5 295 81 372 9.75e-63 204
Msa0905700 AT5G07420.1 37.037 297 168 4 5 295 66 349 1.06e-62 203
Msa0905700 AT5G07410.1 35.759 316 179 6 2 310 63 361 8.78e-62 201
Msa0905700 AT3G17060.1 36.624 314 171 7 6 307 46 343 9.28e-62 200
Msa0905700 AT3G05620.1 37.838 296 164 4 8 296 243 525 4.39e-59 198
Msa0905700 AT1G11580.1 37.049 305 166 8 6 295 247 540 1.21e-58 197
Msa0905700 AT4G00190.1 35.913 323 178 8 6 315 165 471 1.29e-58 195
Msa0905700 AT1G11580.2 37.049 305 166 8 6 295 268 561 2.17e-58 197
Msa0905700 AT1G23200.1 38.079 302 162 7 6 296 251 538 4.36e-58 196
Msa0905700 AT4G03930.1 35.294 323 181 7 6 316 216 522 1.42e-57 194
Msa0905700 AT5G49180.1 37.049 305 166 8 6 295 260 553 1.82e-57 194
Msa0905700 AT3G05610.1 35.314 303 173 5 6 295 256 548 4.27e-57 195
Msa0905700 AT3G06830.1 36.562 320 170 8 8 306 260 567 8.26e-57 193
Msa0905700 AT5G27870.1 33.993 303 177 4 6 295 253 545 1.64e-56 195
Msa0905700 AT3G27980.1 34.365 323 184 7 6 316 189 495 4.99e-56 189
Msa0905700 AT5G55590.2 39.768 259 141 5 5 255 81 332 5.47e-56 185
Msa0905700 AT1G11590.1 34.365 323 184 7 6 316 216 522 2.85e-55 188
Msa0905700 AT3G14310.1 35.974 303 170 5 7 295 283 575 9.28e-55 188
Msa0905700 AT4G33230.1 36.364 308 168 8 7 298 298 593 4.83e-54 186
Msa0905700 AT3G43270.1 36.755 302 167 5 8 295 217 508 6.09e-54 184
Msa0905700 AT1G53830.1 35.974 303 170 5 7 295 278 570 8.40e-54 185
Msa0905700 AT2G45220.1 36.304 303 162 8 8 295 209 495 1.32e-52 181
Msa0905700 AT5G04960.1 35.514 321 181 7 6 316 258 562 2.39e-52 181
Msa0905700 AT4G02330.1 32.899 307 180 6 5 295 258 554 4.58e-52 180
Msa0905700 AT3G24130.1 33.770 305 169 8 8 296 36 323 1.05e-51 174
Msa0905700 AT3G10710.1 35.312 320 182 7 6 316 256 559 2.25e-51 178
Msa0905700 AT3G49220.1 35.294 306 171 7 6 295 285 579 2.98e-51 178
Msa0905700 AT3G49220.3 35.294 306 171 7 6 295 330 624 4.75e-51 179
Msa0905700 AT2G26450.1 33.968 315 176 9 7 305 303 601 1.41e-50 177
Msa0905700 AT1G11370.1 35.317 252 142 4 6 246 46 287 1.81e-50 169
Msa0905700 AT5G18990.1 32.581 310 176 6 3 296 26 318 3.14e-50 170
Msa0905700 AT4G15980.1 33.232 328 183 8 6 316 392 700 7.51e-50 176
Msa0905700 AT4G15980.2 33.232 328 183 8 6 316 402 710 7.62e-50 176
Msa0905700 AT2G47550.1 34.277 318 180 7 5 306 245 549 8.30e-50 174
Msa0905700 AT5G53370.1 33.987 306 175 6 6 295 274 568 8.35e-50 174
Msa0905700 AT5G53370.2 34.202 307 173 6 6 295 310 604 1.23e-49 174
Msa0905700 AT5G26810.1 33.651 315 182 6 6 306 34 335 1.31e-49 168
Msa0905700 AT3G10720.2 34.727 311 172 8 13 306 310 606 1.53e-49 174
Msa0905700 AT3G62170.1 34.211 304 177 6 8 297 279 573 1.69e-49 174
Msa0905700 AT5G64640.1 34.494 316 175 6 6 298 289 595 1.88e-49 174
Msa0905700 AT3G47400.1 34.853 307 173 8 6 295 281 577 3.07e-49 173
Msa0905700 AT5G09760.1 33.227 313 180 4 6 298 241 544 3.86e-49 172
Msa0905700 AT2G47280.1 33.438 317 177 8 4 306 33 329 4.41e-49 167
Msa0905700 AT1G02810.1 33.553 304 174 6 5 291 264 556 5.11e-49 172
Msa0905700 AT5G09760.2 33.227 313 180 4 6 298 267 570 5.34e-49 172
Msa0905700 AT5G04970.1 32.492 317 185 6 6 306 308 611 7.70e-49 172
Msa0905700 AT2G47040.1 33.657 309 182 7 2 297 282 580 8.95e-49 172
Msa0905700 AT4G02300.1 34.967 306 173 6 6 296 222 516 1.04e-48 171
Msa0905700 AT2G47030.1 33.882 304 180 5 7 297 278 573 1.10e-48 171
Msa0905700 AT1G53840.1 33.000 300 181 6 6 295 281 570 1.44e-48 171
Msa0905700 AT4G02320.1 32.407 324 189 6 6 315 208 515 2.24e-48 169
Msa0905700 AT2G43050.1 34.899 298 172 5 8 296 216 500 2.24e-48 169
Msa0905700 AT3G59010.1 33.113 302 181 5 8 302 231 518 2.50e-48 169
Msa0905700 AT5G51490.1 35.065 308 172 7 6 295 222 519 4.01e-48 169
Msa0905700 AT3G60730.1 34.337 332 183 11 2 316 204 517 1.09e-47 167
Msa0905700 AT2G26440.1 33.770 305 175 5 6 295 238 530 1.25e-47 168
Msa0905700 AT2G19150.1 33.010 309 184 5 6 306 41 334 2.11e-47 162
Msa0905700 AT3G10720.1 37.447 235 131 4 85 306 19 250 1.13e-46 158
Msa0905700 AT4G33220.2 32.237 304 182 5 6 295 92 385 3.10e-46 161
Msa0905700 AT4G33220.1 32.237 304 182 5 6 295 213 506 2.15e-45 161
Msa0905700 AT5G51500.1 34.091 308 175 7 6 295 226 523 4.48e-45 161
Msa0905700 AT3G14300.1 32.890 301 181 6 6 295 661 951 5.55e-44 161
Msa0905700 AT5G20860.2 30.619 307 183 7 6 296 230 522 1.37e-42 154
Msa0905700 AT2G19150.2 33.068 251 148 4 6 248 41 279 9.60e-38 136
Msa0905700 AT5G20860.1 28.671 286 148 5 6 277 230 473 9.25e-34 129
Msa0905700 AT1G44980.1 30.460 174 111 2 6 179 78 241 3.99e-21 90.9

Find 75 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTGCAGGTTGGAATAAT+TGG 0.137609 6_2:+3928670 Msa0905700:CDS
ATTCCAACCTGCAGGCTTTA+TGG 0.156303 6_2:-3928664 None:intergenic
GGTCTTTGCATTTACTTATA+TGG 0.186939 6_2:+3928635 Msa0905700:CDS
AGCAGAATATGGAATCTTTA+AGG 0.227555 6_2:-3929010 None:intergenic
GACACACTTTATTTACATTA+TGG 0.250000 6_2:+3927541 Msa0905700:CDS
GTGATAGGGAATGGGACTTT+TGG 0.298313 6_2:+3926810 Msa0905700:CDS
GGAAGGCCATGGGGACCTTT+TGG 0.316288 6_2:+3928606 Msa0905700:CDS
GTATTGACAGTGTCACAAAA+TGG 0.320111 6_2:+3926320 Msa0905700:CDS
TGGATGTGAATGTGATATAA+AGG 0.346918 6_2:+3929062 Msa0905700:three_prime_UTR
TGGCAATAGCACTGCACTCT+TGG 0.360428 6_2:+3927615 Msa0905700:CDS
TTTACAATTGCAGGTTCCTT+GGG 0.365614 6_2:+3927420 Msa0905700:CDS
ATAGATAAATTATAGATTAT+CGG 0.374729 6_2:-3929189 None:intergenic
GTCCTTCGAAACGAGTGAAA+TGG 0.379315 6_2:+3928893 Msa0905700:CDS
TTGCAGAGTTCTAAGGTGAT+AGG 0.379724 6_2:+3926795 Msa0905700:intron
GCCTGCAGGTTGGAATAATT+GGG 0.385108 6_2:+3928671 Msa0905700:CDS
GGAAGTTCATATACATATCT+TGG 0.394856 6_2:+3928585 Msa0905700:CDS
TCTGCTTAAAAGTTATGTTA+AGG 0.398814 6_2:+3929027 Msa0905700:exon
TCCTTCGAAACGAGTGAAAT+GGG 0.400804 6_2:+3928894 Msa0905700:CDS
TTGAGAGATTGTTATATTGA+AGG 0.415181 6_2:+3927574 Msa0905700:CDS
GTGCTTGCTTCTATGAATAC+AGG 0.418669 6_2:+3928715 Msa0905700:CDS
GTTGTTGTTGCAGAGTTCTA+AGG 0.419372 6_2:+3926788 Msa0905700:intron
ACACACGTCGGACGATCATA+AGG 0.423759 6_2:+3926396 Msa0905700:CDS
TTCATAATGTTACTCATGCT+TGG 0.424047 6_2:-3929134 None:intergenic
AGTGGTTGCCGGTAGATTCC+CGG 0.425744 6_2:-3926425 None:intergenic
TTGCAGGTTCCTTGGGTGGC+AGG 0.427351 6_2:+3927427 Msa0905700:CDS
TTGCTACGTAAAGTGGTTGC+CGG 0.435259 6_2:-3926436 None:intergenic
CATATCCACTGCAAGTCTGC+AGG 0.437941 6_2:+3927646 Msa0905700:CDS
TTAGTCTTTGCTACGTAAAG+TGG 0.442440 6_2:-3926443 None:intergenic
TGGAAGTACGATTGTGGAAG+GGG 0.453802 6_2:+3926836 Msa0905700:CDS
TGTGACACTGTCAATACAAA+AGG 0.455866 6_2:-3926314 None:intergenic
CCCCAATTATTCCAACCTGC+AGG 0.464703 6_2:-3928672 None:intergenic
TTCTTTATCCTTCAACACTC+TGG 0.469155 6_2:-3928917 None:intergenic
ACAGTGTCACAAAATGGAAC+AGG 0.476089 6_2:+3926326 Msa0905700:CDS
CATGTGAGAATAGTATCTTC+AGG 0.482520 6_2:-3926494 None:intergenic
AATTACAGGTGTTTCGGACC+AGG 0.485071 6_2:+3928865 Msa0905700:intron
GACGATCATAAGGATATCTC+CGG 0.489954 6_2:+3926406 Msa0905700:CDS
GAAATGGGCCAGAGTGTTGA+AGG 0.490212 6_2:+3928909 Msa0905700:CDS
AGTTCTAAGGTGATAGGGAA+TGG 0.497376 6_2:+3926801 Msa0905700:CDS
TTGAATTACTATGAGTACCT+TGG 0.518951 6_2:+3929224 Msa0905700:three_prime_UTR
GCCCATTTCACTCGTTTCGA+AGG 0.520390 6_2:-3928895 None:intergenic
TGCAGAGTTCTAAGGTGATA+GGG 0.520871 6_2:+3926796 Msa0905700:intron
GGATGTGAATGTGATATAAA+GGG 0.523110 6_2:+3929063 Msa0905700:three_prime_UTR
GTTGAAGGATAAAGAAGCTG+AGG 0.526749 6_2:+3928924 Msa0905700:CDS
TACATATCTTGGAAGGCCAT+GGG 0.533342 6_2:+3928596 Msa0905700:CDS
GGATATCTCCGGGAATCTAC+CGG 0.534564 6_2:+3926417 Msa0905700:CDS
ACAATTGCAGGTTCCTTGGG+TGG 0.537665 6_2:+3927423 Msa0905700:CDS
GTTCTAAGGTGATAGGGAAT+GGG 0.539964 6_2:+3926802 Msa0905700:CDS
GCAAAGACCACTCTTCCAAA+AGG 0.543612 6_2:-3928621 None:intergenic
TTGTTATATTGAAGGAAGTG+TGG 0.550354 6_2:+3927582 Msa0905700:CDS
ATACATATCTTGGAAGGCCA+TGG 0.551565 6_2:+3928595 Msa0905700:CDS
AGATGTGCTATCACAGGCAA+TGG 0.564500 6_2:+3928561 Msa0905700:intron
TGTGGAAGTACGATTGTGGA+AGG 0.564913 6_2:+3926834 Msa0905700:CDS
GCCGTTCTTTGAGCAAGCCA+AGG 0.565342 6_2:-3928988 None:intergenic
AAATCTCCACATGAAAAGAC+TGG 0.568295 6_2:+3927691 Msa0905700:CDS
GTGGAAGTACGATTGTGGAA+GGG 0.576938 6_2:+3926835 Msa0905700:CDS
GTTCATATACATATCTTGGA+AGG 0.578328 6_2:+3928589 Msa0905700:CDS
GATCATTCCATAAAGCCTGC+AGG 0.580526 6_2:+3928657 Msa0905700:CDS
GATTACAGATGTGCTATCAC+AGG 0.582789 6_2:+3928555 Msa0905700:intron
TAAACCCTGCAGACTTGCAG+TGG 0.583906 6_2:-3927651 None:intergenic
ATATCCACTGCAAGTCTGCA+GGG 0.587199 6_2:+3927647 Msa0905700:CDS
ACCTTGGCTTGCTCAAAGAA+CGG 0.598780 6_2:+3928987 Msa0905700:CDS
TGTGCTATCACAGGCAATGG+AGG 0.600519 6_2:+3928564 Msa0905700:CDS
TGTTAAGGATACTTGAGACA+TGG 0.600652 6_2:+3929042 Msa0905700:three_prime_UTR
ACGATCATAAGGATATCTCC+GGG 0.609422 6_2:+3926407 Msa0905700:CDS
ACTCTTCCAAAAGGTCCCCA+TGG 0.609898 6_2:-3928612 None:intergenic
CCTGCAGGTTGGAATAATTG+GGG 0.620195 6_2:+3928672 Msa0905700:CDS
ATTCCATAAAGCCTGCAGGT+TGG 0.621141 6_2:+3928661 Msa0905700:CDS
CTGAAGATACTATTCTCACA+TGG 0.629930 6_2:+3926495 Msa0905700:CDS
TGGTTGTGGAAGTACGATTG+TGG 0.644197 6_2:+3926830 Msa0905700:CDS
GTCCGACGTGTGTTTCTGAG+TGG 0.645729 6_2:-3926386 None:intergenic
GTAAAGTTACCTGCCACCCA+AGG 0.645790 6_2:-3927436 None:intergenic
TGGATAAAATAAAATAACCA+AGG 0.662102 6_2:-3929241 None:intergenic
ACATATCTTGGAAGGCCATG+GGG 0.667181 6_2:+3928597 Msa0905700:CDS
CTGCAGGTTGGAATAATTGG+GGG 0.728016 6_2:+3928673 Msa0905700:CDS
TGCCACTCAGAAACACACGT+CGG 0.821008 6_2:+3926384 Msa0905700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTGATGTTTTTAT+TGG + chr6_2:3926742-3926761 Msa0905700:intron 10.0%
!! ATAGATAAATTATAGATTAT+CGG - chr6_2:3929192-3929211 None:intergenic 10.0%
!! AAATTAAATTATTCATGTGT+TGG - chr6_2:3926661-3926680 None:intergenic 15.0%
!! AATCTACAATTATATATTCT+AGG + chr6_2:3928473-3928492 Msa0905700:intron 15.0%
!!! TTTTACATATAAAGTGTAAA+TGG + chr6_2:3928522-3928541 Msa0905700:intron 15.0%
!! TAACTATGTATAAAAATTAC+AGG + chr6_2:3928851-3928870 Msa0905700:intron 15.0%
!!! ATTAAAGCTTTTTAAGATTT+GGG - chr6_2:3929105-3929124 None:intergenic 15.0%
!!! TATTAAAGCTTTTTAAGATT+TGG - chr6_2:3929106-3929125 None:intergenic 15.0%
!! ACAACAAAAATTACAAGTAA+TGG + chr6_2:3926289-3926308 Msa0905700:exon 20.0%
!!! TTTGTGCAAAATTTTAAGTT+TGG + chr6_2:3927107-3927126 Msa0905700:intron 20.0%
!! ATGAAAAAAAAAAGAAGGAA+AGG - chr6_2:3927346-3927365 None:intergenic 20.0%
!!! TTTCCTTCTTTTTTTTTTCA+TGG + chr6_2:3927345-3927364 Msa0905700:intron 20.0%
!! ATAAAAACACGCAAATTAAA+TGG + chr6_2:3927991-3928010 Msa0905700:intron 20.0%
!! TTGATCTGAACAAATTATTT+AGG - chr6_2:3928214-3928233 None:intergenic 20.0%
!! ATAAAAAGGAAAAAAACATG+TGG + chr6_2:3928322-3928341 Msa0905700:intron 20.0%
!! TATAAAAATTACAGGTGTTT+CGG + chr6_2:3928859-3928878 Msa0905700:intron 20.0%
!!! TAAGATTTGGGTTTTATTTT+AGG - chr6_2:3929093-3929112 None:intergenic 20.0%
!!! AAGAATTTCATCACTTTTGT+TGG + chr6_2:3926464-3926483 Msa0905700:CDS 25.0%
!!! TTGATGGTGATCAATTTTAT+TGG - chr6_2:3926531-3926550 None:intergenic 25.0%
! AAATACATGAACTTACTTGA+TGG - chr6_2:3926547-3926566 None:intergenic 25.0%
!! GACATTTTCTCAAAAGATAA+AGG - chr6_2:3926943-3926962 None:intergenic 25.0%
! CTCAAAATCTTTGATATTGA+GGG + chr6_2:3926995-3927014 Msa0905700:intron 25.0%
!! AAAATTTTGCACAAAATCGA+TGG - chr6_2:3927102-3927121 None:intergenic 25.0%
! AAAAATCTGCATAATGCTTA+TGG - chr6_2:3927282-3927301 None:intergenic 25.0%
!!! TTCTTTTTTTTTTCATGGCA+GGG + chr6_2:3927350-3927369 Msa0905700:intron 25.0%
! TCTCTTATGTATTTGTTCAT+AGG + chr6_2:3927459-3927478 Msa0905700:intron 25.0%
!! TTTTTCATTGTTTATGATGC+AGG + chr6_2:3927519-3927538 Msa0905700:intron 25.0%
!! GACACACTTTATTTACATTA+TGG + chr6_2:3927541-3927560 Msa0905700:CDS 25.0%
! TTGAGAGATTGTTATATTGA+AGG + chr6_2:3927574-3927593 Msa0905700:CDS 25.0%
! ACACTAAAAAAACATAGACA+CGG + chr6_2:3927771-3927790 Msa0905700:intron 25.0%
! TAATCTTTGTGCAAAACTTA+TGG - chr6_2:3928069-3928088 None:intergenic 25.0%
!! AAATGATTTTATAGATGTGC+CGG - chr6_2:3928174-3928193 None:intergenic 25.0%
! TCTGAACAAATTATTTAGGA+TGG - chr6_2:3928210-3928229 None:intergenic 25.0%
!! ATTATATATTCTAGGCCTTT+TGG + chr6_2:3928481-3928500 Msa0905700:intron 25.0%
! TATAAAGTGTAAATGGTTTG+TGG + chr6_2:3928529-3928548 Msa0905700:intron 25.0%
!! CATAACTTTTAAGCAGAATA+TGG - chr6_2:3929024-3929043 None:intergenic 25.0%
! TCTGCTTAAAAGTTATGTTA+AGG + chr6_2:3929027-3929046 Msa0905700:exon 25.0%
CAAACTATGAAATGTGTGTA+CGG + chr6_2:3926598-3926617 Msa0905700:intron 30.0%
!! TTTTGAGAATTTTTCTCCTG+AGG + chr6_2:3926884-3926903 Msa0905700:CDS 30.0%
TATATCATAGTGTGTTCTGA+TGG + chr6_2:3926907-3926926 Msa0905700:intron 30.0%
! CCTCAATATCAAAGATTTTG+AGG - chr6_2:3926997-3927016 None:intergenic 30.0%
CCTCAAAATCTTTGATATTG+AGG + chr6_2:3926994-3927013 Msa0905700:intron 30.0%
! TGGACTGCAATTTAAAACTA+CGG + chr6_2:3927032-3927051 Msa0905700:intron 30.0%
!! TTGATTTGCAGTCAAAATTG+TGG + chr6_2:3927231-3927250 Msa0905700:intron 30.0%
TATGGAGATACTACTTAATC+AGG - chr6_2:3927264-3927283 None:intergenic 30.0%
CTGCCATGAAAAAAAAAAGA+AGG - chr6_2:3927351-3927370 None:intergenic 30.0%
!!! CTTCTTTTTTTTTTCATGGC+AGG + chr6_2:3927349-3927368 Msa0905700:intron 30.0%
TTTGTTCATAGGTTAGATGT+TGG + chr6_2:3927470-3927489 Msa0905700:intron 30.0%
GTTGGAACAAGAATTTGAAA+AGG + chr6_2:3927488-3927507 Msa0905700:intron 30.0%
TTGTTATATTGAAGGAAGTG+TGG + chr6_2:3927582-3927601 Msa0905700:CDS 30.0%
!! AGACTGGTTATGTATTTTTG+AGG + chr6_2:3927707-3927726 Msa0905700:CDS 30.0%
ATATAACCACATGCATATAC+AGG + chr6_2:3927855-3927874 Msa0905700:intron 30.0%
TATAACCACATGCATATACA+GGG + chr6_2:3927856-3927875 Msa0905700:intron 30.0%
ACAAATAAGTGCAAACAATG+AGG - chr6_2:3928044-3928063 None:intergenic 30.0%
!! CACAATTTGCTAAGTTGAAA+GGG - chr6_2:3928097-3928116 None:intergenic 30.0%
CTTTCAACTTAGCAAATTGT+GGG + chr6_2:3928096-3928115 Msa0905700:intron 30.0%
GGCACATCTATAAAATCATT+TGG + chr6_2:3928173-3928192 Msa0905700:intron 30.0%
TTCAGATCAAAATGACTTTG+CGG + chr6_2:3928224-3928243 Msa0905700:intron 30.0%
TAACACGAAATATATGCACA+GGG - chr6_2:3928383-3928402 None:intergenic 30.0%
CTATGATGTAATGAACCAAA+AGG - chr6_2:3928499-3928518 None:intergenic 30.0%
!!! CTTTTGGTTCATTACATCAT+AGG + chr6_2:3928497-3928516 Msa0905700:intron 30.0%
GGAAGTTCATATACATATCT+TGG + chr6_2:3928585-3928604 Msa0905700:CDS 30.0%
GTTCATATACATATCTTGGA+AGG + chr6_2:3928589-3928608 Msa0905700:CDS 30.0%
GGTCTTTGCATTTACTTATA+TGG + chr6_2:3928635-3928654 Msa0905700:CDS 30.0%
GACACATGTAATACAAAGAT+AGG - chr6_2:3928754-3928773 None:intergenic 30.0%
AGCAGAATATGGAATCTTTA+AGG - chr6_2:3929013-3929032 None:intergenic 30.0%
TGGATGTGAATGTGATATAA+AGG + chr6_2:3929062-3929081 Msa0905700:three_prime_UTR 30.0%
GGATGTGAATGTGATATAAA+GGG + chr6_2:3929063-3929082 Msa0905700:three_prime_UTR 30.0%
TTCATAATGTTACTCATGCT+TGG - chr6_2:3929137-3929156 None:intergenic 30.0%
TTGAATTACTATGAGTACCT+TGG + chr6_2:3929224-3929243 Msa0905700:three_prime_UTR 30.0%
TGTGACACTGTCAATACAAA+AGG - chr6_2:3926317-3926336 None:intergenic 35.0%
! GTATTGACAGTGTCACAAAA+TGG + chr6_2:3926320-3926339 Msa0905700:CDS 35.0%
! TTAGTCTTTGCTACGTAAAG+TGG - chr6_2:3926446-3926465 None:intergenic 35.0%
CATGTGAGAATAGTATCTTC+AGG - chr6_2:3926497-3926516 None:intergenic 35.0%
CTGAAGATACTATTCTCACA+TGG + chr6_2:3926495-3926514 Msa0905700:CDS 35.0%
AACACACTATGATATACCTC+AGG - chr6_2:3926903-3926922 None:intergenic 35.0%
! CTGCATTTTCCACAATATCA+AGG - chr6_2:3927150-3927169 None:intergenic 35.0%
!!! TGCAGATTTTTTTGACACAC+AGG + chr6_2:3927291-3927310 Msa0905700:intron 35.0%
! GATGTGCATTTTACAATTGC+AGG + chr6_2:3927411-3927430 Msa0905700:CDS 35.0%
! TTTTACAATTGCAGGTTCCT+TGG + chr6_2:3927419-3927438 Msa0905700:CDS 35.0%
TTTACAATTGCAGGTTCCTT+GGG + chr6_2:3927420-3927439 Msa0905700:CDS 35.0%
AAATCTCCACATGAAAAGAC+TGG + chr6_2:3927691-3927710 Msa0905700:CDS 35.0%
! ACATAACCAGTCTTTTCATG+TGG - chr6_2:3927700-3927719 None:intergenic 35.0%
CCAGTTTCTCAAACTATTAC+TGG - chr6_2:3927825-3927844 None:intergenic 35.0%
CCAGTAATAGTTTGAGAAAC+TGG + chr6_2:3927822-3927841 Msa0905700:intron 35.0%
ATAACCACATGCATATACAG+GGG + chr6_2:3927857-3927876 Msa0905700:intron 35.0%
!! CCACAATTTGCTAAGTTGAA+AGG - chr6_2:3928098-3928117 None:intergenic 35.0%
CCTTTCAACTTAGCAAATTG+TGG + chr6_2:3928095-3928114 Msa0905700:intron 35.0%
AACACGAAATATATGCACAG+GGG - chr6_2:3928382-3928401 None:intergenic 35.0%
CTAACACGAAATATATGCAC+AGG - chr6_2:3928384-3928403 None:intergenic 35.0%
TGTCAGACAATGATACATGT+CGG + chr6_2:3928404-3928423 Msa0905700:intron 35.0%
TTCTTTATCCTTCAACACTC+TGG - chr6_2:3928920-3928939 None:intergenic 35.0%
TGTTAAGGATACTTGAGACA+TGG + chr6_2:3929042-3929061 Msa0905700:three_prime_UTR 35.0%
ACAGTGTCACAAAATGGAAC+AGG + chr6_2:3926326-3926345 Msa0905700:CDS 40.0%
GACGATCATAAGGATATCTC+CGG + chr6_2:3926406-3926425 Msa0905700:CDS 40.0%
ACGATCATAAGGATATCTCC+GGG + chr6_2:3926407-3926426 Msa0905700:CDS 40.0%
!! TTCATGTGTTGGTGTTGTGT+TGG - chr6_2:3926650-3926669 None:intergenic 40.0%
! GTTGTTGTTGCAGAGTTCTA+AGG + chr6_2:3926788-3926807 Msa0905700:intron 40.0%
!! TTGCAGAGTTCTAAGGTGAT+AGG + chr6_2:3926795-3926814 Msa0905700:intron 40.0%
!! TGCAGAGTTCTAAGGTGATA+GGG + chr6_2:3926796-3926815 Msa0905700:intron 40.0%
!! AGTTCTAAGGTGATAGGGAA+TGG + chr6_2:3926801-3926820 Msa0905700:CDS 40.0%
!! GTTCTAAGGTGATAGGGAAT+GGG + chr6_2:3926802-3926821 Msa0905700:CDS 40.0%
TTGAGAAAATGTCGCTGATG+CGG + chr6_2:3926950-3926969 Msa0905700:intron 40.0%
! TGATATTGAGGGTGCAATTG+TGG + chr6_2:3927006-3927025 Msa0905700:intron 40.0%
TTCCACAATATCAAGGATCG+TGG - chr6_2:3927143-3927162 None:intergenic 40.0%
!!! TTTTTTTCATGGCAGGGTTC+AGG + chr6_2:3927356-3927375 Msa0905700:intron 40.0%
!!! TTTTTTCATGGCAGGGTTCA+GGG + chr6_2:3927357-3927376 Msa0905700:intron 40.0%
!! GGAAGTGTGGACTTCATTTT+TGG + chr6_2:3927595-3927614 Msa0905700:CDS 40.0%
ATCCAGACTTTAGGTAGATG+TGG + chr6_2:3927883-3927902 Msa0905700:intron 40.0%
! TTTTATAGATGTGCCGGAAG+TGG - chr6_2:3928168-3928187 None:intergenic 40.0%
ATGACTTTGCGGAACTAAAG+AGG + chr6_2:3928235-3928254 Msa0905700:intron 40.0%
GATTACAGATGTGCTATCAC+AGG + chr6_2:3928555-3928574 Msa0905700:intron 40.0%
ATACATATCTTGGAAGGCCA+TGG + chr6_2:3928595-3928614 Msa0905700:CDS 40.0%
TACATATCTTGGAAGGCCAT+GGG + chr6_2:3928596-3928615 Msa0905700:CDS 40.0%
GTGCTTGCTTCTATGAATAC+AGG + chr6_2:3928715-3928734 Msa0905700:CDS 40.0%
TCCTTCGAAACGAGTGAAAT+GGG + chr6_2:3928894-3928913 Msa0905700:CDS 40.0%
GTTGAAGGATAAAGAAGCTG+AGG + chr6_2:3928924-3928943 Msa0905700:CDS 40.0%
ATCCAGAACCACAAAAACCT+TGG + chr6_2:3928971-3928990 Msa0905700:CDS 40.0%
TTGCTACGTAAAGTGGTTGC+CGG - chr6_2:3926439-3926458 None:intergenic 45.0%
!! TGTTGTGTTGGTGTCACACA+CGG - chr6_2:3926638-3926657 None:intergenic 45.0%
TCACACATCAAACACGACAC+TGG - chr6_2:3926702-3926721 None:intergenic 45.0%
! GTGATAGGGAATGGGACTTT+TGG + chr6_2:3926810-3926829 Msa0905700:CDS 45.0%
! TGGTTGTGGAAGTACGATTG+TGG + chr6_2:3926830-3926849 Msa0905700:CDS 45.0%
! TGTGGAAGTACGATTGTGGA+AGG + chr6_2:3926834-3926853 Msa0905700:CDS 45.0%
! GTGGAAGTACGATTGTGGAA+GGG + chr6_2:3926835-3926854 Msa0905700:CDS 45.0%
! TGGAAGTACGATTGTGGAAG+GGG + chr6_2:3926836-3926855 Msa0905700:CDS 45.0%
TGCCACGATCCTTGATATTG+TGG + chr6_2:3927138-3927157 Msa0905700:intron 45.0%
ACCTCAATTGCAGTCGTTTG+TGG + chr6_2:3927188-3927207 Msa0905700:intron 45.0%
ACCACAAACGACTGCAATTG+AGG - chr6_2:3927192-3927211 None:intergenic 45.0%
TGCAGTCAAAATTGTGGTCG+CGG + chr6_2:3927237-3927256 Msa0905700:intron 45.0%
ATATCCACTGCAAGTCTGCA+GGG + chr6_2:3927647-3927666 Msa0905700:CDS 45.0%
TGACCAAGTCTAGTGTCATC+TGG + chr6_2:3927734-3927753 Msa0905700:intron 45.0%
CAACCAGATGACACTAGACT+TGG - chr6_2:3927740-3927759 None:intergenic 45.0%
CTCCACATCTACCTAAAGTC+TGG - chr6_2:3927888-3927907 None:intergenic 45.0%
CTTTGCGGAACTAAAGAGGA+AGG + chr6_2:3928239-3928258 Msa0905700:intron 45.0%
ACGAAATATATGCACAGGGG+CGG - chr6_2:3928379-3928398 None:intergenic 45.0%
AGATGTGCTATCACAGGCAA+TGG + chr6_2:3928561-3928580 Msa0905700:intron 45.0%
ACATATCTTGGAAGGCCATG+GGG + chr6_2:3928597-3928616 Msa0905700:CDS 45.0%
GCAAAGACCACTCTTCCAAA+AGG - chr6_2:3928624-3928643 None:intergenic 45.0%
GATCATTCCATAAAGCCTGC+AGG + chr6_2:3928657-3928676 Msa0905700:CDS 45.0%
ATTCCATAAAGCCTGCAGGT+TGG + chr6_2:3928661-3928680 Msa0905700:CDS 45.0%
ATTCCAACCTGCAGGCTTTA+TGG - chr6_2:3928667-3928686 None:intergenic 45.0%
! AGCCTGCAGGTTGGAATAAT+TGG + chr6_2:3928670-3928689 Msa0905700:CDS 45.0%
! GCCTGCAGGTTGGAATAATT+GGG + chr6_2:3928671-3928690 Msa0905700:CDS 45.0%
! CCTGCAGGTTGGAATAATTG+GGG + chr6_2:3928672-3928691 Msa0905700:CDS 45.0%
! CTGCAGGTTGGAATAATTGG+GGG + chr6_2:3928673-3928692 Msa0905700:CDS 45.0%
AATTACAGGTGTTTCGGACC+AGG + chr6_2:3928865-3928884 Msa0905700:intron 45.0%
CGTTTCGAAGGACAAAAACC+TGG - chr6_2:3928886-3928905 None:intergenic 45.0%
GTCCTTCGAAACGAGTGAAA+TGG + chr6_2:3928893-3928912 Msa0905700:CDS 45.0%
! AGCCAAGGTTTTTGTGGTTC+TGG - chr6_2:3928976-3928995 None:intergenic 45.0%
! TGAGCAAGCCAAGGTTTTTG+TGG - chr6_2:3928982-3929001 None:intergenic 45.0%
!! ACCTTGGCTTGCTCAAAGAA+CGG + chr6_2:3928987-3929006 Msa0905700:CDS 45.0%
!! ATTATAACAAAAAAATAAAA+AGG + chr6_2:3928308-3928327 Msa0905700:intron 5.0%
TGCCACTCAGAAACACACGT+CGG + chr6_2:3926384-3926403 Msa0905700:CDS 50.0%
ACACACGTCGGACGATCATA+AGG + chr6_2:3926396-3926415 Msa0905700:CDS 50.0%
GGATATCTCCGGGAATCTAC+CGG + chr6_2:3926417-3926436 Msa0905700:CDS 50.0%
TGTCACACACGGTCACATGT+GGG - chr6_2:3926627-3926646 None:intergenic 50.0%
!! GGGAATGGGACTTTTGGTTG+TGG + chr6_2:3926816-3926835 Msa0905700:CDS 50.0%
! TGAGGGTGCAATTGTGGTTG+TGG + chr6_2:3927012-3927031 Msa0905700:intron 50.0%
ACAATTGCAGGTTCCTTGGG+TGG + chr6_2:3927423-3927442 Msa0905700:CDS 50.0%
GTAAAGTTACCTGCCACCCA+AGG - chr6_2:3927439-3927458 None:intergenic 50.0%
TGGCAATAGCACTGCACTCT+TGG + chr6_2:3927615-3927634 Msa0905700:CDS 50.0%
CATATCCACTGCAAGTCTGC+AGG + chr6_2:3927646-3927665 Msa0905700:CDS 50.0%
TAAACCCTGCAGACTTGCAG+TGG - chr6_2:3927654-3927673 None:intergenic 50.0%
TCTGCCCCTGTATATGCATG+TGG - chr6_2:3927864-3927883 None:intergenic 50.0%
TGAGTGTGTAACGCCACTTC+CGG + chr6_2:3928152-3928171 Msa0905700:intron 50.0%
TGTGGAGCTATAGCTCCACA+TGG + chr6_2:3928340-3928359 Msa0905700:intron 50.0%
TGTGCTATCACAGGCAATGG+AGG + chr6_2:3928564-3928583 Msa0905700:CDS 50.0%
ACTCTTCCAAAAGGTCCCCA+TGG - chr6_2:3928615-3928634 None:intergenic 50.0%
!! ATGGGGACCTTTTGGAAGAG+TGG + chr6_2:3928614-3928633 Msa0905700:CDS 50.0%
CCCCAATTATTCCAACCTGC+AGG - chr6_2:3928675-3928694 None:intergenic 50.0%
GCCCATTTCACTCGTTTCGA+AGG - chr6_2:3928898-3928917 None:intergenic 50.0%
!! GAAATGGGCCAGAGTGTTGA+AGG + chr6_2:3928909-3928928 Msa0905700:CDS 50.0%
! GTCCGACGTGTGTTTCTGAG+TGG - chr6_2:3926389-3926408 None:intergenic 55.0%
AGTGGTTGCCGGTAGATTCC+CGG - chr6_2:3926428-3926447 None:intergenic 55.0%
GTGTCACACACGGTCACATG+TGG - chr6_2:3926628-3926647 None:intergenic 55.0%
CAGGGGCAGATCCAGACTTT+AGG + chr6_2:3927874-3927893 Msa0905700:intron 55.0%
AGCTCCACATGGCACCTAAG+TGG + chr6_2:3928351-3928370 Msa0905700:intron 55.0%
! GGATCCACTTAGGTGCCATG+TGG - chr6_2:3928358-3928377 None:intergenic 55.0%
GCCGTTCTTTGAGCAAGCCA+AGG - chr6_2:3928991-3929010 None:intergenic 55.0%
TTGCAGGTTCCTTGGGTGGC+AGG + chr6_2:3927427-3927446 Msa0905700:CDS 60.0%
! GGAAGGCCATGGGGACCTTT+TGG + chr6_2:3928606-3928625 Msa0905700:CDS 60.0%
GCACAGGGGCGGATCCACTT+AGG - chr6_2:3928368-3928387 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3926254 3929259 3926254 ID=Msa0905700;Name=Msa0905700
chr6_2 mRNA 3926254 3929259 3926254 ID=Msa0905700-mRNA-1;Parent=Msa0905700;Name=Msa0905700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|6|224|316
chr6_2 exon 3926254 3926550 3926254 ID=Msa0905700-mRNA-1:exon:1184;Parent=Msa0905700-mRNA-1
chr6_2 exon 3926801 3926905 3926801 ID=Msa0905700-mRNA-1:exon:1185;Parent=Msa0905700-mRNA-1
chr6_2 exon 3927371 3927448 3927371 ID=Msa0905700-mRNA-1:exon:1186;Parent=Msa0905700-mRNA-1
chr6_2 exon 3927541 3927728 3927541 ID=Msa0905700-mRNA-1:exon:1187;Parent=Msa0905700-mRNA-1
chr6_2 exon 3928563 3928736 3928563 ID=Msa0905700-mRNA-1:exon:1188;Parent=Msa0905700-mRNA-1
chr6_2 exon 3928873 3929259 3928873 ID=Msa0905700-mRNA-1:exon:1189;Parent=Msa0905700-mRNA-1
chr6_2 five_prime_UTR 3926254 3926307 3926254 ID=Msa0905700-mRNA-1:five_prime_utr;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3926308 3926550 3926308 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3926801 3926905 3926801 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3927371 3927448 3927371 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3927541 3927728 3927541 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3928563 3928736 3928563 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 CDS 3928873 3929035 3928873 ID=Msa0905700-mRNA-1:cds;Parent=Msa0905700-mRNA-1
chr6_2 three_prime_UTR 3929036 3929259 3929036 ID=Msa0905700-mRNA-1:three_prime_utr;Parent=Msa0905700-mRNA-1
Gene Sequence

>Msa0905700

ATGGCACCTTTTGTATTGACAGTGTCACAAAATGGAACAGGAAACTACAGAACAGTACAAGAAGCTATTGATGCAGTGCCACTCAGAAACACACGTCGGACGATCATAAGGATATCTCCGGGAATCTACCGGCAACCACTTTACGTAGCAAAGACTAAGAATTTCATCACTTTTGTTGGTTTGTGTCCTGAAGATACTATTCTCACATGGAACAACACTGCCAATAAAATTGATCACCATCAAAGTTCTAAGGTGATAGGGAATGGGACTTTTGGTTGTGGAAGTACGATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATTACTTTTGAGAATTTTTCTCCTGAGGGTTCAGGGCAAGCAGTAGCAGTTAGAGTAACAGCAGATAGATGTGCATTTTACAATTGCAGGTTCCTTGGGTGGCAGGACACACTTTATTTACATTATGGCAAGCAATATTTGAGAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGCAATAGCACTGCACTCTTGGAACATTGTCATATCCACTGCAAGTCTGCAGGGTTTATAACTGCACAGAGCAGAAAATCTCCACATGAAAAGACTGGTTATGTATTTTTGAGATGTGCTATCACAGGCAATGGAGGAAGTTCATATACATATCTTGGAAGGCCATGGGGACCTTTTGGAAGAGTGGTCTTTGCATTTACTTATATGGATCATTCCATAAAGCCTGCAGGTTGGAATAATTGGGGGAAAGTTGAAAATGAAAAAAGTGCTTGCTTCTATGAATACAGGTGTTTCGGACCAGGTTTTTGTCCTTCGAAACGAGTGAAATGGGCCAGAGTGTTGAAGGATAAAGAAGCTGAGGAGTTTCTCATGCATAGTTTCATTGATCCAGAACCACAAAAACCTTGGCTTGCTCAAAGAACGGCCTTAAAGATTCCATATTCTGCTTAA
Protein sequence

>Msa0905700

MAPFVLTVSQNGTGNYRTVQEAIDAVPLRNTRRTIIRISPGIYRQPLYVAKTKNFITFVGLCPEDTILTWNNTANKIDHHQSSKVIGNGTFGCGSTIVEGEDFIAENITFENFSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGYVFLRCAITGNGGSSYTYLGRPWGPFGRVVFAFTYMDHSIKPAGWNNWGKVENEKSACFYEYRCFGPGFCPSKRVKWARVLKDKEAEEFLMHSFIDPEPQKPWLAQRTALKIPYSA*