AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872900 MtrunA17_Chr1g0181301 74.065 401 91 5 4 394 3 400 0.0 597
Msa0872900 MtrunA17_Chr5g0415931 52.926 393 165 8 5 393 6 382 1.94e-141 407
Msa0872900 MtrunA17_Chr5g0415901 46.667 390 141 8 5 392 4 328 5.51e-114 336
Msa0872900 MtrunA17_Chr1g0208731 43.467 398 165 11 1 392 1 344 2.82e-86 265
Msa0872900 MtrunA17_Chr5g0437231 48.571 315 133 9 5 318 4 290 1.50e-82 254
Msa0872900 MtrunA17_Chr7g0247701 40.291 412 184 17 1 392 1 370 9.97e-75 237
Msa0872900 MtrunA17_Chr7g0247731 40.714 420 171 16 1 394 1 368 3.95e-74 235
Msa0872900 MtrunA17_Chr7g0247721 39.720 428 168 18 1 394 39 410 5.87e-71 228
Msa0872900 MtrunA17_Chr5g0437241 42.456 285 130 6 80 361 1 254 6.97e-62 200
Msa0872900 MtrunA17_Chr6g0459631 79.464 112 19 1 117 224 41 152 1.50e-53 176
Msa0872900 MtrunA17_Chr6g0459631 83.871 62 10 0 333 394 149 210 9.10e-32 119
Msa0872900 MtrunA17_Chr7g0246641 42.671 307 129 14 95 394 4 270 2.52e-50 170
Msa0872900 MtrunA17_Chr1g0151451 45.274 201 83 5 1 190 1 185 3.54e-44 152
Msa0872900 MtrunA17_Chr3g0143621 27.436 390 227 18 3 366 21 380 2.77e-23 100
Msa0872900 MtrunA17_Chr7g0246651 36.517 178 93 6 95 263 45 211 4.22e-23 96.3
Msa0872900 MtrunA17_Chr7g0246661 37.594 133 65 3 176 301 8 129 2.14e-15 72.8
Msa0872900 MtrunA17_Chr8g0371101 25.255 392 225 15 2 366 3 353 1.89e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGTCGGCTTCGTATTT+TGG 0.208690 6_1:+8512002 Msa0872900:CDS
AATGTTAAAGCTTGATAGTT+TGG 0.243559 6_1:+8511941 Msa0872900:CDS
TAAAAGCTGGACAAAAGTTT+TGG 0.255927 6_1:+8511568 Msa0872900:CDS
TATGTTGTAGTTGCAATTTA+TGG 0.256703 6_1:+8511522 Msa0872900:CDS
CCACAAAGCCTCTTGTTATA+AGG 0.264739 6_1:-8511300 None:intergenic
TAGGGTTATTATTGTAAGTT+TGG 0.266002 6_1:-8511361 None:intergenic
TGGCTTGTAAGGAAATTTAT+TGG 0.269879 6_1:+8511807 Msa0872900:CDS
TGTTATAAGGGAGTGGTAAT+TGG 0.273748 6_1:-8511287 None:intergenic
TTCATATCAAATGGTCCATT+AGG 0.289459 6_1:-8512092 None:intergenic
TATCGGCAAATCCTACAATT+AGG 0.290712 6_1:+8511490 Msa0872900:CDS
CTAACTCTTCTATATATATC+TGG 0.344601 6_1:-8511435 None:intergenic
TCATATCAAATGGTCCATTA+GGG 0.347171 6_1:-8512091 None:intergenic
GTCAATGGAGGCAGTAGATT+GGG 0.349372 6_1:+8511035 None:intergenic
ATATATATCTGGCATGTAGA+TGG 0.350445 6_1:-8511424 None:intergenic
CGAAGTGTATAAGTTGGAAT+TGG 0.356208 6_1:+8511893 Msa0872900:CDS
AGAACAAAGAGATGTTTATA+TGG 0.371045 6_1:+8511237 Msa0872900:CDS
CCTTATAACAAGAGGCTTTG+TGG 0.380145 6_1:+8511300 Msa0872900:CDS
ATGTTAAAGCTTGATAGTTT+GGG 0.382709 6_1:+8511942 Msa0872900:CDS
TCCTAATGTTGTTTCACCAT+GGG 0.397638 6_1:+8511731 Msa0872900:CDS
AGGGAGACTTGTGGCTTGTA+AGG 0.407147 6_1:+8511796 Msa0872900:CDS
AGCTATTATTCCCACTGAAA+TGG 0.414384 6_1:-8512206 None:intergenic
CACAAAGCCTCTTGTTATAA+GGG 0.423159 6_1:-8511299 None:intergenic
TCAGCGTGGTATGCAAGAAT+TGG 0.424757 6_1:+8511127 Msa0872900:CDS
TTGTGGTTCAAGTCATGGTT+GGG 0.440074 6_1:+8511317 Msa0872900:CDS
TGTCAATGGAGGCAGTAGAT+TGG 0.445882 6_1:+8511034 None:intergenic
TTATGAATGTAACGTTCATA+AGG 0.448018 6_1:+8511461 Msa0872900:CDS
TGTCTTGCTTTCATAAAAGC+TGG 0.450654 6_1:+8511555 Msa0872900:CDS
GAACAAAGAGATGTTTATAT+GGG 0.454874 6_1:+8511238 Msa0872900:CDS
AAAATCTATAATGTAAAAGA+TGG 0.455567 6_1:+8512113 Msa0872900:CDS
GTTCACACGGATGCCACCTT+CGG 0.463341 6_1:+8512169 Msa0872900:CDS
TAATCGTGAGGCCTAATTGT+AGG 0.471723 6_1:-8511501 None:intergenic
AAGATTCGAAGTGTATAAGT+TGG 0.476468 6_1:+8511887 Msa0872900:CDS
TTTGTGGTTCAAGTCATGGT+TGG 0.477178 6_1:+8511316 Msa0872900:CDS
GCACCGGATCCTTACCCTAA+TGG 0.478062 6_1:+8512077 Msa0872900:CDS
CCCCATGGTGAAACAACATT+AGG 0.481080 6_1:-8511732 None:intergenic
AGGCTTTGTGGTTCAAGTCA+TGG 0.485655 6_1:+8511312 Msa0872900:CDS
TTCATCATCAATGTCATCAT+CGG 0.495737 6_1:-8511835 None:intergenic
AGCATTGCAATTTCGAACAT+TGG 0.498979 6_1:+8512147 Msa0872900:CDS
TCATCATCAATGTCATCATC+GGG 0.501772 6_1:-8511834 None:intergenic
GGCATGTAGATGGGTGGTAG+AGG 0.516014 6_1:-8511414 None:intergenic
TTGATAACTAAACTTTGCAA+TGG 0.525381 6_1:-8511154 None:intergenic
TAGTCTATGCTGCGGGACGG+TGG 0.528532 6_1:+8511646 Msa0872900:CDS
AAGGGAGTGGTAATTGGAAG+TGG 0.531731 6_1:-8511281 None:intergenic
TAATGTTGTTTCACCATGGG+GGG 0.533333 6_1:+8511734 Msa0872900:CDS
CACGGATGCCACCTTCGGTG+TGG 0.534966 6_1:+8512174 Msa0872900:CDS
TCAAATGGTCCATTAGGGTA+AGG 0.543154 6_1:-8512086 None:intergenic
TTCCTAATGTTGTTTCACCA+TGG 0.544368 6_1:+8511730 Msa0872900:CDS
GGGTTCTTCCGCCATTTCAG+TGG 0.545118 6_1:+8512195 Msa0872900:CDS
GGTTCTTCCGCCATTTCAGT+GGG 0.545364 6_1:+8512196 Msa0872900:CDS
TACCACTCCCTTATAACAAG+AGG 0.545416 6_1:+8511292 Msa0872900:CDS
ACGGATGCCACCTTCGGTGT+GGG 0.551054 6_1:+8512175 Msa0872900:CDS
AGCCTCTTGTTATAAGGGAG+TGG 0.552882 6_1:-8511294 None:intergenic
TATATATCTGGCATGTAGAT+GGG 0.560379 6_1:-8511423 None:intergenic
GTAGATGGGTGGTAGAGGGA+TGG 0.563925 6_1:-8511409 None:intergenic
TTTGTGGGAATCATTAGCAT+AGG 0.565295 6_1:-8511204 None:intergenic
TCATGGTTGGGTAGCAAAGG+TGG 0.565480 6_1:+8511329 Msa0872900:CDS
TGATTATTTCGAAGAAGCAC+CGG 0.570964 6_1:+8512061 Msa0872900:CDS
GGAAGAACCCACACCGAAGG+TGG 0.579383 6_1:-8512182 None:intergenic
GGTCCATTAGGGTAAGGATC+CGG 0.584997 6_1:-8512080 None:intergenic
AAAGGGTTAGTCTATGCTGC+GGG 0.586027 6_1:+8511639 Msa0872900:CDS
TAGTGATTCTGTATCTATGT+CGG 0.590343 6_1:+8511989 Msa0872900:CDS
AAGTCATGGTTGGGTAGCAA+AGG 0.591114 6_1:+8511326 Msa0872900:CDS
CCTAATGTTGTTTCACCATG+GGG 0.597547 6_1:+8511732 Msa0872900:CDS
GCATGTAGATGGGTGGTAGA+GGG 0.597842 6_1:-8511413 None:intergenic
ATTTCGAACATTGGTTCACA+CGG 0.602276 6_1:+8512156 Msa0872900:CDS
GATAGTAACTTGCCTAGTAG+TGG 0.603948 6_1:+8511858 Msa0872900:CDS
TCAATGGAGGCAGTAGATTG+GGG 0.615269 6_1:+8511036 None:intergenic
GGCGGAAGAACCCACACCGA+AGG 0.621085 6_1:-8512185 None:intergenic
TGCTTCTTCGAAATAATCAT+CGG 0.622108 6_1:-8512057 None:intergenic
TAAAGGGTTAGTCTATGCTG+CGG 0.625231 6_1:+8511638 Msa0872900:CDS
TATTATTCCCACTGAAATGG+CGG 0.639125 6_1:-8512203 None:intergenic
AATCATTGGAGGGAGACTTG+TGG 0.640759 6_1:+8511787 Msa0872900:CDS
GGTTAGTCTATGCTGCGGGA+CGG 0.640853 6_1:+8511643 Msa0872900:CDS
TTGGAATTGGATCTTCAAAG+TGG 0.643699 6_1:+8511906 Msa0872900:CDS
CTAATGTTGTTTCACCATGG+GGG 0.657132 6_1:+8511733 Msa0872900:CDS
CGATCACATTTATTTCAGCG+TGG 0.681214 6_1:+8511113 Msa0872900:CDS
ATATCTGGCATGTAGATGGG+TGG 0.682216 6_1:-8511420 None:intergenic
GCAACTACAACATAATCGTG+AGG 0.708433 6_1:-8511513 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGATTTTCATATCAAA+TGG - chr6_1:8512104-8512123 None:intergenic 15.0%
!! AAAATCTATAATGTAAAAGA+TGG + chr6_1:8512113-8512132 Msa0872900:CDS 15.0%
!!! TTATAGATTTTCATATCAAA+TGG - chr6_1:8512104-8512123 None:intergenic 15.0%
!! AAAATCTATAATGTAAAAGA+TGG + chr6_1:8512113-8512132 Msa0872900:CDS 15.0%
!! TTGTTAAAAATCAAACTAAG+AGG - chr6_1:8511078-8511097 None:intergenic 20.0%
!!! GTAATACATTGTTTTTGATT+TGG - chr6_1:8511185-8511204 None:intergenic 20.0%
!!! AGCGATGTTATATTTTATAA+AGG + chr6_1:8511621-8511640 Msa0872900:CDS 20.0%
!!! GCGATGTTATATTTTATAAA+GGG + chr6_1:8511622-8511641 Msa0872900:CDS 20.0%
!!! TTTTGGTAATTATCTACAAA+AGG + chr6_1:8512019-8512038 Msa0872900:CDS 20.0%
!! TTGTTAAAAATCAAACTAAG+AGG - chr6_1:8511078-8511097 None:intergenic 20.0%
!!! GTAATACATTGTTTTTGATT+TGG - chr6_1:8511185-8511204 None:intergenic 20.0%
!!! AGCGATGTTATATTTTATAA+AGG + chr6_1:8511621-8511640 Msa0872900:CDS 20.0%
!!! GCGATGTTATATTTTATAAA+GGG + chr6_1:8511622-8511641 Msa0872900:CDS 20.0%
!!! TTTTGGTAATTATCTACAAA+AGG + chr6_1:8512019-8512038 Msa0872900:CDS 20.0%
!! TTGATAACTAAACTTTGCAA+TGG - chr6_1:8511157-8511176 None:intergenic 25.0%
! AGAACAAAGAGATGTTTATA+TGG + chr6_1:8511237-8511256 Msa0872900:CDS 25.0%
! GAACAAAGAGATGTTTATAT+GGG + chr6_1:8511238-8511257 Msa0872900:CDS 25.0%
! TAGGGTTATTATTGTAAGTT+TGG - chr6_1:8511364-8511383 None:intergenic 25.0%
!!! ATTTTTGAAGGGATTTAGTA+GGG - chr6_1:8511382-8511401 None:intergenic 25.0%
!! ATGGAAACTAGATTTTTGAA+GGG - chr6_1:8511393-8511412 None:intergenic 25.0%
! CTAACTCTTCTATATATATC+TGG - chr6_1:8511438-8511457 None:intergenic 25.0%
! TTATGAATGTAACGTTCATA+AGG + chr6_1:8511461-8511480 Msa0872900:CDS 25.0%
!!! CGTTCATAAGGTTATTTTAT+CGG + chr6_1:8511473-8511492 Msa0872900:CDS 25.0%
! TATGTTGTAGTTGCAATTTA+TGG + chr6_1:8511522-8511541 Msa0872900:CDS 25.0%
!! TTTTGATATTTGTAACTCGA+AGG + chr6_1:8511683-8511702 Msa0872900:CDS 25.0%
!! AGCATATTTTGTGAAATCAT+TGG + chr6_1:8511773-8511792 Msa0872900:CDS 25.0%
!! ATATTTTGTGAAATCATTGG+AGG + chr6_1:8511776-8511795 Msa0872900:CDS 25.0%
!! TATTTTGTGAAATCATTGGA+GGG + chr6_1:8511777-8511796 Msa0872900:CDS 25.0%
!! AATGTTAAAGCTTGATAGTT+TGG + chr6_1:8511941-8511960 Msa0872900:CDS 25.0%
!! ATGTTAAAGCTTGATAGTTT+GGG + chr6_1:8511942-8511961 Msa0872900:CDS 25.0%
!! TTGATAACTAAACTTTGCAA+TGG - chr6_1:8511157-8511176 None:intergenic 25.0%
! AGAACAAAGAGATGTTTATA+TGG + chr6_1:8511237-8511256 Msa0872900:CDS 25.0%
! GAACAAAGAGATGTTTATAT+GGG + chr6_1:8511238-8511257 Msa0872900:CDS 25.0%
! TAGGGTTATTATTGTAAGTT+TGG - chr6_1:8511364-8511383 None:intergenic 25.0%
!!! ATTTTTGAAGGGATTTAGTA+GGG - chr6_1:8511382-8511401 None:intergenic 25.0%
!! ATGGAAACTAGATTTTTGAA+GGG - chr6_1:8511393-8511412 None:intergenic 25.0%
! CTAACTCTTCTATATATATC+TGG - chr6_1:8511438-8511457 None:intergenic 25.0%
! TTATGAATGTAACGTTCATA+AGG + chr6_1:8511461-8511480 Msa0872900:CDS 25.0%
!!! CGTTCATAAGGTTATTTTAT+CGG + chr6_1:8511473-8511492 Msa0872900:CDS 25.0%
! TATGTTGTAGTTGCAATTTA+TGG + chr6_1:8511522-8511541 Msa0872900:CDS 25.0%
!! TTTTGATATTTGTAACTCGA+AGG + chr6_1:8511683-8511702 Msa0872900:CDS 25.0%
!! AGCATATTTTGTGAAATCAT+TGG + chr6_1:8511773-8511792 Msa0872900:CDS 25.0%
!! ATATTTTGTGAAATCATTGG+AGG + chr6_1:8511776-8511795 Msa0872900:CDS 25.0%
!! TATTTTGTGAAATCATTGGA+GGG + chr6_1:8511777-8511796 Msa0872900:CDS 25.0%
!! AATGTTAAAGCTTGATAGTT+TGG + chr6_1:8511941-8511960 Msa0872900:CDS 25.0%
!! ATGTTAAAGCTTGATAGTTT+GGG + chr6_1:8511942-8511961 Msa0872900:CDS 25.0%
TAATGATTCCCACAAAAAGA+AGG + chr6_1:8511211-8511230 Msa0872900:CDS 30.0%
! TTGGAAGTGGTAAATTTTGT+TGG - chr6_1:8511271-8511290 None:intergenic 30.0%
!! GATTTTTGAAGGGATTTAGT+AGG - chr6_1:8511383-8511402 None:intergenic 30.0%
! GATGGAAACTAGATTTTTGA+AGG - chr6_1:8511394-8511413 None:intergenic 30.0%
TATATATCTGGCATGTAGAT+GGG - chr6_1:8511426-8511445 None:intergenic 30.0%
ATATATATCTGGCATGTAGA+TGG - chr6_1:8511427-8511446 None:intergenic 30.0%
! TAAAAGCTGGACAAAAGTTT+TGG + chr6_1:8511568-8511587 Msa0872900:CDS 30.0%
! TGGCTTGTAAGGAAATTTAT+TGG + chr6_1:8511807-8511826 Msa0872900:CDS 30.0%
TTCATCATCAATGTCATCAT+CGG - chr6_1:8511838-8511857 None:intergenic 30.0%
! AATCTTTTAGTACCACTACT+AGG - chr6_1:8511873-8511892 None:intergenic 30.0%
AAGATTCGAAGTGTATAAGT+TGG + chr6_1:8511887-8511906 Msa0872900:CDS 30.0%
!!! GGAGACAATGTTTTATTTGT+GGG + chr6_1:8511963-8511982 Msa0872900:CDS 30.0%
TAGTGATTCTGTATCTATGT+CGG + chr6_1:8511989-8512008 Msa0872900:CDS 30.0%
TGCTTCTTCGAAATAATCAT+CGG - chr6_1:8512060-8512079 None:intergenic 30.0%
TCATATCAAATGGTCCATTA+GGG - chr6_1:8512094-8512113 None:intergenic 30.0%
TTCATATCAAATGGTCCATT+AGG - chr6_1:8512095-8512114 None:intergenic 30.0%
TAATGATTCCCACAAAAAGA+AGG + chr6_1:8511211-8511230 Msa0872900:CDS 30.0%
! TTGGAAGTGGTAAATTTTGT+TGG - chr6_1:8511271-8511290 None:intergenic 30.0%
!! GATTTTTGAAGGGATTTAGT+AGG - chr6_1:8511383-8511402 None:intergenic 30.0%
! GATGGAAACTAGATTTTTGA+AGG - chr6_1:8511394-8511413 None:intergenic 30.0%
TATATATCTGGCATGTAGAT+GGG - chr6_1:8511426-8511445 None:intergenic 30.0%
ATATATATCTGGCATGTAGA+TGG - chr6_1:8511427-8511446 None:intergenic 30.0%
! TAAAAGCTGGACAAAAGTTT+TGG + chr6_1:8511568-8511587 Msa0872900:CDS 30.0%
! TGGCTTGTAAGGAAATTTAT+TGG + chr6_1:8511807-8511826 Msa0872900:CDS 30.0%
TTCATCATCAATGTCATCAT+CGG - chr6_1:8511838-8511857 None:intergenic 30.0%
! AATCTTTTAGTACCACTACT+AGG - chr6_1:8511873-8511892 None:intergenic 30.0%
AAGATTCGAAGTGTATAAGT+TGG + chr6_1:8511887-8511906 Msa0872900:CDS 30.0%
!!! GGAGACAATGTTTTATTTGT+GGG + chr6_1:8511963-8511982 Msa0872900:CDS 30.0%
TAGTGATTCTGTATCTATGT+CGG + chr6_1:8511989-8512008 Msa0872900:CDS 30.0%
TGCTTCTTCGAAATAATCAT+CGG - chr6_1:8512060-8512079 None:intergenic 30.0%
TCATATCAAATGGTCCATTA+GGG - chr6_1:8512094-8512113 None:intergenic 30.0%
TTCATATCAAATGGTCCATT+AGG - chr6_1:8512095-8512114 None:intergenic 30.0%
TTTGTGGGAATCATTAGCAT+AGG - chr6_1:8511207-8511226 None:intergenic 35.0%
! GTTCTACACCTTCTTTTTGT+GGG - chr6_1:8511222-8511241 None:intergenic 35.0%
! TGTTCTACACCTTCTTTTTG+TGG - chr6_1:8511223-8511242 None:intergenic 35.0%
TGTTATAAGGGAGTGGTAAT+TGG - chr6_1:8511290-8511309 None:intergenic 35.0%
! CACAAAGCCTCTTGTTATAA+GGG - chr6_1:8511302-8511321 None:intergenic 35.0%
TATCGGCAAATCCTACAATT+AGG + chr6_1:8511490-8511509 Msa0872900:CDS 35.0%
TGTCTTGCTTTCATAAAAGC+TGG + chr6_1:8511555-8511574 Msa0872900:CDS 35.0%
!! TTCCTAATGTTGTTTCACCA+TGG + chr6_1:8511730-8511749 Msa0872900:CDS 35.0%
!! TCCTAATGTTGTTTCACCAT+GGG + chr6_1:8511731-8511750 Msa0872900:CDS 35.0%
TCATCATCAATGTCATCATC+GGG - chr6_1:8511837-8511856 None:intergenic 35.0%
! CGAAGTGTATAAGTTGGAAT+TGG + chr6_1:8511893-8511912 Msa0872900:CDS 35.0%
TTGGAATTGGATCTTCAAAG+TGG + chr6_1:8511906-8511925 Msa0872900:CDS 35.0%
!!! GGGAGACAATGTTTTATTTG+TGG + chr6_1:8511962-8511981 Msa0872900:CDS 35.0%
! TGATTATTTCGAAGAAGCAC+CGG + chr6_1:8512061-8512080 Msa0872900:CDS 35.0%
AGCATTGCAATTTCGAACAT+TGG + chr6_1:8512147-8512166 Msa0872900:CDS 35.0%
!! ATTTCGAACATTGGTTCACA+CGG + chr6_1:8512156-8512175 Msa0872900:CDS 35.0%
TTTGTGGGAATCATTAGCAT+AGG - chr6_1:8511207-8511226 None:intergenic 35.0%
! GTTCTACACCTTCTTTTTGT+GGG - chr6_1:8511222-8511241 None:intergenic 35.0%
! TGTTCTACACCTTCTTTTTG+TGG - chr6_1:8511223-8511242 None:intergenic 35.0%
TGTTATAAGGGAGTGGTAAT+TGG - chr6_1:8511290-8511309 None:intergenic 35.0%
! CACAAAGCCTCTTGTTATAA+GGG - chr6_1:8511302-8511321 None:intergenic 35.0%
TATCGGCAAATCCTACAATT+AGG + chr6_1:8511490-8511509 Msa0872900:CDS 35.0%
TGTCTTGCTTTCATAAAAGC+TGG + chr6_1:8511555-8511574 Msa0872900:CDS 35.0%
!! TTCCTAATGTTGTTTCACCA+TGG + chr6_1:8511730-8511749 Msa0872900:CDS 35.0%
!! TCCTAATGTTGTTTCACCAT+GGG + chr6_1:8511731-8511750 Msa0872900:CDS 35.0%
TCATCATCAATGTCATCATC+GGG - chr6_1:8511837-8511856 None:intergenic 35.0%
! CGAAGTGTATAAGTTGGAAT+TGG + chr6_1:8511893-8511912 Msa0872900:CDS 35.0%
TTGGAATTGGATCTTCAAAG+TGG + chr6_1:8511906-8511925 Msa0872900:CDS 35.0%
!!! GGGAGACAATGTTTTATTTG+TGG + chr6_1:8511962-8511981 Msa0872900:CDS 35.0%
! TGATTATTTCGAAGAAGCAC+CGG + chr6_1:8512061-8512080 Msa0872900:CDS 35.0%
AGCATTGCAATTTCGAACAT+TGG + chr6_1:8512147-8512166 Msa0872900:CDS 35.0%
!! ATTTCGAACATTGGTTCACA+CGG + chr6_1:8512156-8512175 Msa0872900:CDS 35.0%
CGATCACATTTATTTCAGCG+TGG + chr6_1:8511113-8511132 Msa0872900:CDS 40.0%
TACCACTCCCTTATAACAAG+AGG + chr6_1:8511292-8511311 Msa0872900:CDS 40.0%
! CCACAAAGCCTCTTGTTATA+AGG - chr6_1:8511303-8511322 None:intergenic 40.0%
CCTTATAACAAGAGGCTTTG+TGG + chr6_1:8511300-8511319 Msa0872900:CDS 40.0%
TTTGTGGTTCAAGTCATGGT+TGG + chr6_1:8511316-8511335 Msa0872900:CDS 40.0%
TTGTGGTTCAAGTCATGGTT+GGG + chr6_1:8511317-8511336 Msa0872900:CDS 40.0%
TAATCGTGAGGCCTAATTGT+AGG - chr6_1:8511504-8511523 None:intergenic 40.0%
GCAACTACAACATAATCGTG+AGG - chr6_1:8511516-8511535 None:intergenic 40.0%
!! TAAAGGGTTAGTCTATGCTG+CGG + chr6_1:8511638-8511657 Msa0872900:CDS 40.0%
!! CCTAATGTTGTTTCACCATG+GGG + chr6_1:8511732-8511751 Msa0872900:CDS 40.0%
!! CTAATGTTGTTTCACCATGG+GGG + chr6_1:8511733-8511752 Msa0872900:CDS 40.0%
!! TAATGTTGTTTCACCATGGG+GGG + chr6_1:8511734-8511753 Msa0872900:CDS 40.0%
! GATAGTAACTTGCCTAGTAG+TGG + chr6_1:8511858-8511877 Msa0872900:CDS 40.0%
!!! TCTATGTCGGCTTCGTATTT+TGG + chr6_1:8512002-8512021 Msa0872900:CDS 40.0%
TCAAATGGTCCATTAGGGTA+AGG - chr6_1:8512089-8512108 None:intergenic 40.0%
CGATCACATTTATTTCAGCG+TGG + chr6_1:8511113-8511132 Msa0872900:CDS 40.0%
TACCACTCCCTTATAACAAG+AGG + chr6_1:8511292-8511311 Msa0872900:CDS 40.0%
! CCACAAAGCCTCTTGTTATA+AGG - chr6_1:8511303-8511322 None:intergenic 40.0%
CCTTATAACAAGAGGCTTTG+TGG + chr6_1:8511300-8511319 Msa0872900:CDS 40.0%
TTTGTGGTTCAAGTCATGGT+TGG + chr6_1:8511316-8511335 Msa0872900:CDS 40.0%
TTGTGGTTCAAGTCATGGTT+GGG + chr6_1:8511317-8511336 Msa0872900:CDS 40.0%
TAATCGTGAGGCCTAATTGT+AGG - chr6_1:8511504-8511523 None:intergenic 40.0%
GCAACTACAACATAATCGTG+AGG - chr6_1:8511516-8511535 None:intergenic 40.0%
!! TAAAGGGTTAGTCTATGCTG+CGG + chr6_1:8511638-8511657 Msa0872900:CDS 40.0%
!! CCTAATGTTGTTTCACCATG+GGG + chr6_1:8511732-8511751 Msa0872900:CDS 40.0%
!! CTAATGTTGTTTCACCATGG+GGG + chr6_1:8511733-8511752 Msa0872900:CDS 40.0%
!! TAATGTTGTTTCACCATGGG+GGG + chr6_1:8511734-8511753 Msa0872900:CDS 40.0%
! GATAGTAACTTGCCTAGTAG+TGG + chr6_1:8511858-8511877 Msa0872900:CDS 40.0%
!!! TCTATGTCGGCTTCGTATTT+TGG + chr6_1:8512002-8512021 Msa0872900:CDS 40.0%
TCAAATGGTCCATTAGGGTA+AGG - chr6_1:8512089-8512108 None:intergenic 40.0%
TCAGCGTGGTATGCAAGAAT+TGG + chr6_1:8511127-8511146 Msa0872900:CDS 45.0%
AAGGGAGTGGTAATTGGAAG+TGG - chr6_1:8511284-8511303 None:intergenic 45.0%
! AGCCTCTTGTTATAAGGGAG+TGG - chr6_1:8511297-8511316 None:intergenic 45.0%
! AGGCTTTGTGGTTCAAGTCA+TGG + chr6_1:8511312-8511331 Msa0872900:CDS 45.0%
AAGTCATGGTTGGGTAGCAA+AGG + chr6_1:8511326-8511345 Msa0872900:CDS 45.0%
ATATCTGGCATGTAGATGGG+TGG - chr6_1:8511423-8511442 None:intergenic 45.0%
!! AAAGGGTTAGTCTATGCTGC+GGG + chr6_1:8511639-8511658 Msa0872900:CDS 45.0%
CCCCATGGTGAAACAACATT+AGG - chr6_1:8511735-8511754 None:intergenic 45.0%
AATCATTGGAGGGAGACTTG+TGG + chr6_1:8511787-8511806 Msa0872900:CDS 45.0%
TCAGCGTGGTATGCAAGAAT+TGG + chr6_1:8511127-8511146 Msa0872900:CDS 45.0%
AAGGGAGTGGTAATTGGAAG+TGG - chr6_1:8511284-8511303 None:intergenic 45.0%
! AGCCTCTTGTTATAAGGGAG+TGG - chr6_1:8511297-8511316 None:intergenic 45.0%
! AGGCTTTGTGGTTCAAGTCA+TGG + chr6_1:8511312-8511331 Msa0872900:CDS 45.0%
AAGTCATGGTTGGGTAGCAA+AGG + chr6_1:8511326-8511345 Msa0872900:CDS 45.0%
ATATCTGGCATGTAGATGGG+TGG - chr6_1:8511423-8511442 None:intergenic 45.0%
!! AAAGGGTTAGTCTATGCTGC+GGG + chr6_1:8511639-8511658 Msa0872900:CDS 45.0%
CCCCATGGTGAAACAACATT+AGG - chr6_1:8511735-8511754 None:intergenic 45.0%
AATCATTGGAGGGAGACTTG+TGG + chr6_1:8511787-8511806 Msa0872900:CDS 45.0%
TCATGGTTGGGTAGCAAAGG+TGG + chr6_1:8511329-8511348 Msa0872900:CDS 50.0%
GCATGTAGATGGGTGGTAGA+GGG - chr6_1:8511416-8511435 None:intergenic 50.0%
TGAGCAAAATCATCCCCCCA+TGG - chr6_1:8511750-8511769 None:intergenic 50.0%
! AGGGAGACTTGTGGCTTGTA+AGG + chr6_1:8511796-8511815 Msa0872900:CDS 50.0%
GGTCCATTAGGGTAAGGATC+CGG - chr6_1:8512083-8512102 None:intergenic 50.0%
GGTTCTTCCGCCATTTCAGT+GGG + chr6_1:8512196-8512215 Msa0872900:CDS 50.0%
TCATGGTTGGGTAGCAAAGG+TGG + chr6_1:8511329-8511348 Msa0872900:CDS 50.0%
GCATGTAGATGGGTGGTAGA+GGG - chr6_1:8511416-8511435 None:intergenic 50.0%
TGAGCAAAATCATCCCCCCA+TGG - chr6_1:8511750-8511769 None:intergenic 50.0%
! AGGGAGACTTGTGGCTTGTA+AGG + chr6_1:8511796-8511815 Msa0872900:CDS 50.0%
GGTCCATTAGGGTAAGGATC+CGG - chr6_1:8512083-8512102 None:intergenic 50.0%
GGTTCTTCCGCCATTTCAGT+GGG + chr6_1:8512196-8512215 Msa0872900:CDS 50.0%
GTAGATGGGTGGTAGAGGGA+TGG - chr6_1:8511412-8511431 None:intergenic 55.0%
GGCATGTAGATGGGTGGTAG+AGG - chr6_1:8511417-8511436 None:intergenic 55.0%
!! GGTTAGTCTATGCTGCGGGA+CGG + chr6_1:8511643-8511662 Msa0872900:CDS 55.0%
GCACCGGATCCTTACCCTAA+TGG + chr6_1:8512077-8512096 Msa0872900:CDS 55.0%
GTTCACACGGATGCCACCTT+CGG + chr6_1:8512169-8512188 Msa0872900:CDS 55.0%
GGGTTCTTCCGCCATTTCAG+TGG + chr6_1:8512195-8512214 Msa0872900:CDS 55.0%
GTAGATGGGTGGTAGAGGGA+TGG - chr6_1:8511412-8511431 None:intergenic 55.0%
GGCATGTAGATGGGTGGTAG+AGG - chr6_1:8511417-8511436 None:intergenic 55.0%
!! GGTTAGTCTATGCTGCGGGA+CGG + chr6_1:8511643-8511662 Msa0872900:CDS 55.0%
GCACCGGATCCTTACCCTAA+TGG + chr6_1:8512077-8512096 Msa0872900:CDS 55.0%
GTTCACACGGATGCCACCTT+CGG + chr6_1:8512169-8512188 Msa0872900:CDS 55.0%
GGGTTCTTCCGCCATTTCAG+TGG + chr6_1:8512195-8512214 Msa0872900:CDS 55.0%
TAGTCTATGCTGCGGGACGG+TGG + chr6_1:8511646-8511665 Msa0872900:CDS 60.0%
! ACGGATGCCACCTTCGGTGT+GGG + chr6_1:8512175-8512194 Msa0872900:CDS 60.0%
GGAAGAACCCACACCGAAGG+TGG - chr6_1:8512185-8512204 None:intergenic 60.0%
TAGTCTATGCTGCGGGACGG+TGG + chr6_1:8511646-8511665 Msa0872900:CDS 60.0%
! ACGGATGCCACCTTCGGTGT+GGG + chr6_1:8512175-8512194 Msa0872900:CDS 60.0%
GGAAGAACCCACACCGAAGG+TGG - chr6_1:8512185-8512204 None:intergenic 60.0%
CACGGATGCCACCTTCGGTG+TGG + chr6_1:8512174-8512193 Msa0872900:CDS 65.0%
GGCGGAAGAACCCACACCGA+AGG - chr6_1:8512188-8512207 None:intergenic 65.0%
CACGGATGCCACCTTCGGTG+TGG + chr6_1:8512174-8512193 Msa0872900:CDS 65.0%
GGCGGAAGAACCCACACCGA+AGG - chr6_1:8512188-8512207 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 8511039 8512223 8511039 ID=Msa0872900;Name=Msa0872900
chr6_1 mRNA 8511039 8512223 8511039 ID=Msa0872900-mRNA-1;Parent=Msa0872900;Name=Msa0872900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394
chr6_1 exon 8511039 8512223 8511039 ID=Msa0872900-mRNA-1:exon:2575;Parent=Msa0872900-mRNA-1
chr6_1 CDS 8511039 8512223 8511039 ID=Msa0872900-mRNA-1:cds;Parent=Msa0872900-mRNA-1
Gene Sequence

>Msa0872900

ATGGAGGCAGTAGATTGGGGAAATTTAGAAGCACTTCCTCTTAGTTTGATTTTTAACAAGTTAGTAGAGCGTATCGATCACATTTATTTCAGCGTGGTATGCAAGAATTGGTATTCCATTGCAAAGTTTAGTTATCAAAATCGCCAAATCAAAAACAATGTATTACCTATGCTAATGATTCCCACAAAAAGAAGGTGTAGAACAAAGAGATGTTTATATGGGATTTCATCCAACAAAATTTACCACTTCCAATTACCACTCCCTTATAACAAGAGGCTTTGTGGTTCAAGTCATGGTTGGGTAGCAAAGGTGGATTTTATTTCCAAACTTACAATAATAACCCTACTAAATCCCTTCAAAAATCTAGTTTCCATCCCTCTACCACCCATCTACATGCCAGATATATATAGAAGAGTTAGATATTATGAATGTAACGTTCATAAGGTTATTTTATCGGCAAATCCTACAATTAGGCCTCACGATTATGTTGTAGTTGCAATTTATGGTATGCGTAAATGTCTTGCTTTCATAAAAGCTGGACAAAAGTTTTGGACTTATGTTGATGACGACTATTTTTGCTTCAGCGATGTTATATTTTATAAAGGGTTAGTCTATGCTGCGGGACGGTGGAATAACATTGTCTCTTTTGATATTTGTAACTCGAAGGATTCTTTTGATTGTGAGAAGATCATTCCTAATGTTGTTTCACCATGGGGGGATGATTTTGCTCATCGAGCATATTTTGTGAAATCATTGGAGGGAGACTTGTGGCTTGTAAGGAAATTTATTGGTTTTCCCGATGATGACATTGATGATGAAGATAGTAACTTGCCTAGTAGTGGTACTAAAAGATTCGAAGTGTATAAGTTGGAATTGGATCTTCAAAGTGGTAAGCTTATACAAATGTTAAAGCTTGATAGTTTGGGAGACAATGTTTTATTTGTGGGTGATAGTGATTCTGTATCTATGTCGGCTTCGTATTTTGGTAATTATCTACAAAAGGATTCAATTTATTACACCGATGATTATTTCGAAGAAGCACCGGATCCTTACCCTAATGGACCATTTGATATGAAAATCTATAATGTAAAAGATGGAAGCTTTAGTAAGCATTGCAATTTCGAACATTGGTTCACACGGATGCCACCTTCGGTGTGGGTTCTTCCGCCATTTCAGTGGGAATAA

Protein sequence

>Msa0872900

MEAVDWGNLEALPLSLIFNKLVERIDHIYFSVVCKNWYSIAKFSYQNRQIKNNVLPMLMIPTKRRCRTKRCLYGISSNKIYHFQLPLPYNKRLCGSSHGWVAKVDFISKLTIITLLNPFKNLVSIPLPPIYMPDIYRRVRYYECNVHKVILSANPTIRPHDYVVVAIYGMRKCLAFIKAGQKFWTYVDDDYFCFSDVIFYKGLVYAAGRWNNIVSFDICNSKDSFDCEKIIPNVVSPWGDDFAHRAYFVKSLEGDLWLVRKFIGFPDDDIDDEDSNLPSSGTKRFEVYKLELDLQSGKLIQMLKLDSLGDNVLFVGDSDSVSMSASYFGNYLQKDSIYYTDDYFEEAPDPYPNGPFDMKIYNVKDGSFSKHCNFEHWFTRMPPSVWVLPPFQWE*