Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0872900 | XP_013468204.1 | 74.065 | 401 | 91 | 5 | 4 | 394 | 3 | 400 | 0.0 | 597 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0872900 | A0A072VKT8 | 74.065 | 401 | 91 | 5 | 4 | 394 | 3 | 400 | 0.0 | 597 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0243100 | Msa0872900 | 0.803915 | 2.774808e-49 | -8.615850e-47 |
Msa0872900 | Msa0938200 | 0.835861 | 1.311528e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0872900 | MtrunA17_Chr1g0181301 | 74.065 | 401 | 91 | 5 | 4 | 394 | 3 | 400 | 0.0 | 597 |
Msa0872900 | MtrunA17_Chr5g0415931 | 52.926 | 393 | 165 | 8 | 5 | 393 | 6 | 382 | 1.94e-141 | 407 |
Msa0872900 | MtrunA17_Chr5g0415901 | 46.667 | 390 | 141 | 8 | 5 | 392 | 4 | 328 | 5.51e-114 | 336 |
Msa0872900 | MtrunA17_Chr1g0208731 | 43.467 | 398 | 165 | 11 | 1 | 392 | 1 | 344 | 2.82e-86 | 265 |
Msa0872900 | MtrunA17_Chr5g0437231 | 48.571 | 315 | 133 | 9 | 5 | 318 | 4 | 290 | 1.50e-82 | 254 |
Msa0872900 | MtrunA17_Chr7g0247701 | 40.291 | 412 | 184 | 17 | 1 | 392 | 1 | 370 | 9.97e-75 | 237 |
Msa0872900 | MtrunA17_Chr7g0247731 | 40.714 | 420 | 171 | 16 | 1 | 394 | 1 | 368 | 3.95e-74 | 235 |
Msa0872900 | MtrunA17_Chr7g0247721 | 39.720 | 428 | 168 | 18 | 1 | 394 | 39 | 410 | 5.87e-71 | 228 |
Msa0872900 | MtrunA17_Chr5g0437241 | 42.456 | 285 | 130 | 6 | 80 | 361 | 1 | 254 | 6.97e-62 | 200 |
Msa0872900 | MtrunA17_Chr6g0459631 | 79.464 | 112 | 19 | 1 | 117 | 224 | 41 | 152 | 1.50e-53 | 176 |
Msa0872900 | MtrunA17_Chr6g0459631 | 83.871 | 62 | 10 | 0 | 333 | 394 | 149 | 210 | 9.10e-32 | 119 |
Msa0872900 | MtrunA17_Chr7g0246641 | 42.671 | 307 | 129 | 14 | 95 | 394 | 4 | 270 | 2.52e-50 | 170 |
Msa0872900 | MtrunA17_Chr1g0151451 | 45.274 | 201 | 83 | 5 | 1 | 190 | 1 | 185 | 3.54e-44 | 152 |
Msa0872900 | MtrunA17_Chr3g0143621 | 27.436 | 390 | 227 | 18 | 3 | 366 | 21 | 380 | 2.77e-23 | 100 |
Msa0872900 | MtrunA17_Chr7g0246651 | 36.517 | 178 | 93 | 6 | 95 | 263 | 45 | 211 | 4.22e-23 | 96.3 |
Msa0872900 | MtrunA17_Chr7g0246661 | 37.594 | 133 | 65 | 3 | 176 | 301 | 8 | 129 | 2.14e-15 | 72.8 |
Msa0872900 | MtrunA17_Chr8g0371101 | 25.255 | 392 | 225 | 15 | 2 | 366 | 3 | 353 | 1.89e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATGTCGGCTTCGTATTT+TGG | 0.208690 | 6_1:+8512002 | Msa0872900:CDS |
AATGTTAAAGCTTGATAGTT+TGG | 0.243559 | 6_1:+8511941 | Msa0872900:CDS |
TAAAAGCTGGACAAAAGTTT+TGG | 0.255927 | 6_1:+8511568 | Msa0872900:CDS |
TATGTTGTAGTTGCAATTTA+TGG | 0.256703 | 6_1:+8511522 | Msa0872900:CDS |
CCACAAAGCCTCTTGTTATA+AGG | 0.264739 | 6_1:-8511300 | None:intergenic |
TAGGGTTATTATTGTAAGTT+TGG | 0.266002 | 6_1:-8511361 | None:intergenic |
TGGCTTGTAAGGAAATTTAT+TGG | 0.269879 | 6_1:+8511807 | Msa0872900:CDS |
TGTTATAAGGGAGTGGTAAT+TGG | 0.273748 | 6_1:-8511287 | None:intergenic |
TTCATATCAAATGGTCCATT+AGG | 0.289459 | 6_1:-8512092 | None:intergenic |
TATCGGCAAATCCTACAATT+AGG | 0.290712 | 6_1:+8511490 | Msa0872900:CDS |
CTAACTCTTCTATATATATC+TGG | 0.344601 | 6_1:-8511435 | None:intergenic |
TCATATCAAATGGTCCATTA+GGG | 0.347171 | 6_1:-8512091 | None:intergenic |
GTCAATGGAGGCAGTAGATT+GGG | 0.349372 | 6_1:+8511035 | None:intergenic |
ATATATATCTGGCATGTAGA+TGG | 0.350445 | 6_1:-8511424 | None:intergenic |
CGAAGTGTATAAGTTGGAAT+TGG | 0.356208 | 6_1:+8511893 | Msa0872900:CDS |
AGAACAAAGAGATGTTTATA+TGG | 0.371045 | 6_1:+8511237 | Msa0872900:CDS |
CCTTATAACAAGAGGCTTTG+TGG | 0.380145 | 6_1:+8511300 | Msa0872900:CDS |
ATGTTAAAGCTTGATAGTTT+GGG | 0.382709 | 6_1:+8511942 | Msa0872900:CDS |
TCCTAATGTTGTTTCACCAT+GGG | 0.397638 | 6_1:+8511731 | Msa0872900:CDS |
AGGGAGACTTGTGGCTTGTA+AGG | 0.407147 | 6_1:+8511796 | Msa0872900:CDS |
AGCTATTATTCCCACTGAAA+TGG | 0.414384 | 6_1:-8512206 | None:intergenic |
CACAAAGCCTCTTGTTATAA+GGG | 0.423159 | 6_1:-8511299 | None:intergenic |
TCAGCGTGGTATGCAAGAAT+TGG | 0.424757 | 6_1:+8511127 | Msa0872900:CDS |
TTGTGGTTCAAGTCATGGTT+GGG | 0.440074 | 6_1:+8511317 | Msa0872900:CDS |
TGTCAATGGAGGCAGTAGAT+TGG | 0.445882 | 6_1:+8511034 | None:intergenic |
TTATGAATGTAACGTTCATA+AGG | 0.448018 | 6_1:+8511461 | Msa0872900:CDS |
TGTCTTGCTTTCATAAAAGC+TGG | 0.450654 | 6_1:+8511555 | Msa0872900:CDS |
GAACAAAGAGATGTTTATAT+GGG | 0.454874 | 6_1:+8511238 | Msa0872900:CDS |
AAAATCTATAATGTAAAAGA+TGG | 0.455567 | 6_1:+8512113 | Msa0872900:CDS |
GTTCACACGGATGCCACCTT+CGG | 0.463341 | 6_1:+8512169 | Msa0872900:CDS |
TAATCGTGAGGCCTAATTGT+AGG | 0.471723 | 6_1:-8511501 | None:intergenic |
AAGATTCGAAGTGTATAAGT+TGG | 0.476468 | 6_1:+8511887 | Msa0872900:CDS |
TTTGTGGTTCAAGTCATGGT+TGG | 0.477178 | 6_1:+8511316 | Msa0872900:CDS |
GCACCGGATCCTTACCCTAA+TGG | 0.478062 | 6_1:+8512077 | Msa0872900:CDS |
CCCCATGGTGAAACAACATT+AGG | 0.481080 | 6_1:-8511732 | None:intergenic |
AGGCTTTGTGGTTCAAGTCA+TGG | 0.485655 | 6_1:+8511312 | Msa0872900:CDS |
TTCATCATCAATGTCATCAT+CGG | 0.495737 | 6_1:-8511835 | None:intergenic |
AGCATTGCAATTTCGAACAT+TGG | 0.498979 | 6_1:+8512147 | Msa0872900:CDS |
TCATCATCAATGTCATCATC+GGG | 0.501772 | 6_1:-8511834 | None:intergenic |
GGCATGTAGATGGGTGGTAG+AGG | 0.516014 | 6_1:-8511414 | None:intergenic |
TTGATAACTAAACTTTGCAA+TGG | 0.525381 | 6_1:-8511154 | None:intergenic |
TAGTCTATGCTGCGGGACGG+TGG | 0.528532 | 6_1:+8511646 | Msa0872900:CDS |
AAGGGAGTGGTAATTGGAAG+TGG | 0.531731 | 6_1:-8511281 | None:intergenic |
TAATGTTGTTTCACCATGGG+GGG | 0.533333 | 6_1:+8511734 | Msa0872900:CDS |
CACGGATGCCACCTTCGGTG+TGG | 0.534966 | 6_1:+8512174 | Msa0872900:CDS |
TCAAATGGTCCATTAGGGTA+AGG | 0.543154 | 6_1:-8512086 | None:intergenic |
TTCCTAATGTTGTTTCACCA+TGG | 0.544368 | 6_1:+8511730 | Msa0872900:CDS |
GGGTTCTTCCGCCATTTCAG+TGG | 0.545118 | 6_1:+8512195 | Msa0872900:CDS |
GGTTCTTCCGCCATTTCAGT+GGG | 0.545364 | 6_1:+8512196 | Msa0872900:CDS |
TACCACTCCCTTATAACAAG+AGG | 0.545416 | 6_1:+8511292 | Msa0872900:CDS |
ACGGATGCCACCTTCGGTGT+GGG | 0.551054 | 6_1:+8512175 | Msa0872900:CDS |
AGCCTCTTGTTATAAGGGAG+TGG | 0.552882 | 6_1:-8511294 | None:intergenic |
TATATATCTGGCATGTAGAT+GGG | 0.560379 | 6_1:-8511423 | None:intergenic |
GTAGATGGGTGGTAGAGGGA+TGG | 0.563925 | 6_1:-8511409 | None:intergenic |
TTTGTGGGAATCATTAGCAT+AGG | 0.565295 | 6_1:-8511204 | None:intergenic |
TCATGGTTGGGTAGCAAAGG+TGG | 0.565480 | 6_1:+8511329 | Msa0872900:CDS |
TGATTATTTCGAAGAAGCAC+CGG | 0.570964 | 6_1:+8512061 | Msa0872900:CDS |
GGAAGAACCCACACCGAAGG+TGG | 0.579383 | 6_1:-8512182 | None:intergenic |
GGTCCATTAGGGTAAGGATC+CGG | 0.584997 | 6_1:-8512080 | None:intergenic |
AAAGGGTTAGTCTATGCTGC+GGG | 0.586027 | 6_1:+8511639 | Msa0872900:CDS |
TAGTGATTCTGTATCTATGT+CGG | 0.590343 | 6_1:+8511989 | Msa0872900:CDS |
AAGTCATGGTTGGGTAGCAA+AGG | 0.591114 | 6_1:+8511326 | Msa0872900:CDS |
CCTAATGTTGTTTCACCATG+GGG | 0.597547 | 6_1:+8511732 | Msa0872900:CDS |
GCATGTAGATGGGTGGTAGA+GGG | 0.597842 | 6_1:-8511413 | None:intergenic |
ATTTCGAACATTGGTTCACA+CGG | 0.602276 | 6_1:+8512156 | Msa0872900:CDS |
GATAGTAACTTGCCTAGTAG+TGG | 0.603948 | 6_1:+8511858 | Msa0872900:CDS |
TCAATGGAGGCAGTAGATTG+GGG | 0.615269 | 6_1:+8511036 | None:intergenic |
GGCGGAAGAACCCACACCGA+AGG | 0.621085 | 6_1:-8512185 | None:intergenic |
TGCTTCTTCGAAATAATCAT+CGG | 0.622108 | 6_1:-8512057 | None:intergenic |
TAAAGGGTTAGTCTATGCTG+CGG | 0.625231 | 6_1:+8511638 | Msa0872900:CDS |
TATTATTCCCACTGAAATGG+CGG | 0.639125 | 6_1:-8512203 | None:intergenic |
AATCATTGGAGGGAGACTTG+TGG | 0.640759 | 6_1:+8511787 | Msa0872900:CDS |
GGTTAGTCTATGCTGCGGGA+CGG | 0.640853 | 6_1:+8511643 | Msa0872900:CDS |
TTGGAATTGGATCTTCAAAG+TGG | 0.643699 | 6_1:+8511906 | Msa0872900:CDS |
CTAATGTTGTTTCACCATGG+GGG | 0.657132 | 6_1:+8511733 | Msa0872900:CDS |
CGATCACATTTATTTCAGCG+TGG | 0.681214 | 6_1:+8511113 | Msa0872900:CDS |
ATATCTGGCATGTAGATGGG+TGG | 0.682216 | 6_1:-8511420 | None:intergenic |
GCAACTACAACATAATCGTG+AGG | 0.708433 | 6_1:-8511513 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_1:8512104-8512123 | None:intergenic | 15.0% |
!! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_1:8512113-8512132 | Msa0872900:CDS | 15.0% |
!!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_1:8512104-8512123 | None:intergenic | 15.0% |
!! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_1:8512113-8512132 | Msa0872900:CDS | 15.0% |
!! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_1:8511078-8511097 | None:intergenic | 20.0% |
!!! | GTAATACATTGTTTTTGATT+TGG | - | chr6_1:8511185-8511204 | None:intergenic | 20.0% |
!!! | AGCGATGTTATATTTTATAA+AGG | + | chr6_1:8511621-8511640 | Msa0872900:CDS | 20.0% |
!!! | GCGATGTTATATTTTATAAA+GGG | + | chr6_1:8511622-8511641 | Msa0872900:CDS | 20.0% |
!!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_1:8512019-8512038 | Msa0872900:CDS | 20.0% |
!! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_1:8511078-8511097 | None:intergenic | 20.0% |
!!! | GTAATACATTGTTTTTGATT+TGG | - | chr6_1:8511185-8511204 | None:intergenic | 20.0% |
!!! | AGCGATGTTATATTTTATAA+AGG | + | chr6_1:8511621-8511640 | Msa0872900:CDS | 20.0% |
!!! | GCGATGTTATATTTTATAAA+GGG | + | chr6_1:8511622-8511641 | Msa0872900:CDS | 20.0% |
!!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_1:8512019-8512038 | Msa0872900:CDS | 20.0% |
!! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_1:8511157-8511176 | None:intergenic | 25.0% |
! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_1:8511237-8511256 | Msa0872900:CDS | 25.0% |
! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_1:8511238-8511257 | Msa0872900:CDS | 25.0% |
! | TAGGGTTATTATTGTAAGTT+TGG | - | chr6_1:8511364-8511383 | None:intergenic | 25.0% |
!!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_1:8511382-8511401 | None:intergenic | 25.0% |
!! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_1:8511393-8511412 | None:intergenic | 25.0% |
! | CTAACTCTTCTATATATATC+TGG | - | chr6_1:8511438-8511457 | None:intergenic | 25.0% |
! | TTATGAATGTAACGTTCATA+AGG | + | chr6_1:8511461-8511480 | Msa0872900:CDS | 25.0% |
!!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_1:8511473-8511492 | Msa0872900:CDS | 25.0% |
! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_1:8511522-8511541 | Msa0872900:CDS | 25.0% |
!! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_1:8511683-8511702 | Msa0872900:CDS | 25.0% |
!! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_1:8511773-8511792 | Msa0872900:CDS | 25.0% |
!! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_1:8511776-8511795 | Msa0872900:CDS | 25.0% |
!! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_1:8511777-8511796 | Msa0872900:CDS | 25.0% |
!! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_1:8511941-8511960 | Msa0872900:CDS | 25.0% |
!! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_1:8511942-8511961 | Msa0872900:CDS | 25.0% |
!! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_1:8511157-8511176 | None:intergenic | 25.0% |
! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_1:8511237-8511256 | Msa0872900:CDS | 25.0% |
! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_1:8511238-8511257 | Msa0872900:CDS | 25.0% |
! | TAGGGTTATTATTGTAAGTT+TGG | - | chr6_1:8511364-8511383 | None:intergenic | 25.0% |
!!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_1:8511382-8511401 | None:intergenic | 25.0% |
!! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_1:8511393-8511412 | None:intergenic | 25.0% |
! | CTAACTCTTCTATATATATC+TGG | - | chr6_1:8511438-8511457 | None:intergenic | 25.0% |
! | TTATGAATGTAACGTTCATA+AGG | + | chr6_1:8511461-8511480 | Msa0872900:CDS | 25.0% |
!!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_1:8511473-8511492 | Msa0872900:CDS | 25.0% |
! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_1:8511522-8511541 | Msa0872900:CDS | 25.0% |
!! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_1:8511683-8511702 | Msa0872900:CDS | 25.0% |
!! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_1:8511773-8511792 | Msa0872900:CDS | 25.0% |
!! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_1:8511776-8511795 | Msa0872900:CDS | 25.0% |
!! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_1:8511777-8511796 | Msa0872900:CDS | 25.0% |
!! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_1:8511941-8511960 | Msa0872900:CDS | 25.0% |
!! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_1:8511942-8511961 | Msa0872900:CDS | 25.0% |
TAATGATTCCCACAAAAAGA+AGG | + | chr6_1:8511211-8511230 | Msa0872900:CDS | 30.0% | |
! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_1:8511271-8511290 | None:intergenic | 30.0% |
!! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_1:8511383-8511402 | None:intergenic | 30.0% |
! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_1:8511394-8511413 | None:intergenic | 30.0% |
TATATATCTGGCATGTAGAT+GGG | - | chr6_1:8511426-8511445 | None:intergenic | 30.0% | |
ATATATATCTGGCATGTAGA+TGG | - | chr6_1:8511427-8511446 | None:intergenic | 30.0% | |
! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_1:8511568-8511587 | Msa0872900:CDS | 30.0% |
! | TGGCTTGTAAGGAAATTTAT+TGG | + | chr6_1:8511807-8511826 | Msa0872900:CDS | 30.0% |
TTCATCATCAATGTCATCAT+CGG | - | chr6_1:8511838-8511857 | None:intergenic | 30.0% | |
! | AATCTTTTAGTACCACTACT+AGG | - | chr6_1:8511873-8511892 | None:intergenic | 30.0% |
AAGATTCGAAGTGTATAAGT+TGG | + | chr6_1:8511887-8511906 | Msa0872900:CDS | 30.0% | |
!!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_1:8511963-8511982 | Msa0872900:CDS | 30.0% |
TAGTGATTCTGTATCTATGT+CGG | + | chr6_1:8511989-8512008 | Msa0872900:CDS | 30.0% | |
TGCTTCTTCGAAATAATCAT+CGG | - | chr6_1:8512060-8512079 | None:intergenic | 30.0% | |
TCATATCAAATGGTCCATTA+GGG | - | chr6_1:8512094-8512113 | None:intergenic | 30.0% | |
TTCATATCAAATGGTCCATT+AGG | - | chr6_1:8512095-8512114 | None:intergenic | 30.0% | |
TAATGATTCCCACAAAAAGA+AGG | + | chr6_1:8511211-8511230 | Msa0872900:CDS | 30.0% | |
! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_1:8511271-8511290 | None:intergenic | 30.0% |
!! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_1:8511383-8511402 | None:intergenic | 30.0% |
! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_1:8511394-8511413 | None:intergenic | 30.0% |
TATATATCTGGCATGTAGAT+GGG | - | chr6_1:8511426-8511445 | None:intergenic | 30.0% | |
ATATATATCTGGCATGTAGA+TGG | - | chr6_1:8511427-8511446 | None:intergenic | 30.0% | |
! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_1:8511568-8511587 | Msa0872900:CDS | 30.0% |
! | TGGCTTGTAAGGAAATTTAT+TGG | + | chr6_1:8511807-8511826 | Msa0872900:CDS | 30.0% |
TTCATCATCAATGTCATCAT+CGG | - | chr6_1:8511838-8511857 | None:intergenic | 30.0% | |
! | AATCTTTTAGTACCACTACT+AGG | - | chr6_1:8511873-8511892 | None:intergenic | 30.0% |
AAGATTCGAAGTGTATAAGT+TGG | + | chr6_1:8511887-8511906 | Msa0872900:CDS | 30.0% | |
!!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_1:8511963-8511982 | Msa0872900:CDS | 30.0% |
TAGTGATTCTGTATCTATGT+CGG | + | chr6_1:8511989-8512008 | Msa0872900:CDS | 30.0% | |
TGCTTCTTCGAAATAATCAT+CGG | - | chr6_1:8512060-8512079 | None:intergenic | 30.0% | |
TCATATCAAATGGTCCATTA+GGG | - | chr6_1:8512094-8512113 | None:intergenic | 30.0% | |
TTCATATCAAATGGTCCATT+AGG | - | chr6_1:8512095-8512114 | None:intergenic | 30.0% | |
TTTGTGGGAATCATTAGCAT+AGG | - | chr6_1:8511207-8511226 | None:intergenic | 35.0% | |
! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_1:8511222-8511241 | None:intergenic | 35.0% |
! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_1:8511223-8511242 | None:intergenic | 35.0% |
TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_1:8511290-8511309 | None:intergenic | 35.0% | |
! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_1:8511302-8511321 | None:intergenic | 35.0% |
TATCGGCAAATCCTACAATT+AGG | + | chr6_1:8511490-8511509 | Msa0872900:CDS | 35.0% | |
TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_1:8511555-8511574 | Msa0872900:CDS | 35.0% | |
!! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_1:8511730-8511749 | Msa0872900:CDS | 35.0% |
!! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_1:8511731-8511750 | Msa0872900:CDS | 35.0% |
TCATCATCAATGTCATCATC+GGG | - | chr6_1:8511837-8511856 | None:intergenic | 35.0% | |
! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_1:8511893-8511912 | Msa0872900:CDS | 35.0% |
TTGGAATTGGATCTTCAAAG+TGG | + | chr6_1:8511906-8511925 | Msa0872900:CDS | 35.0% | |
!!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_1:8511962-8511981 | Msa0872900:CDS | 35.0% |
! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_1:8512061-8512080 | Msa0872900:CDS | 35.0% |
AGCATTGCAATTTCGAACAT+TGG | + | chr6_1:8512147-8512166 | Msa0872900:CDS | 35.0% | |
!! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_1:8512156-8512175 | Msa0872900:CDS | 35.0% |
TTTGTGGGAATCATTAGCAT+AGG | - | chr6_1:8511207-8511226 | None:intergenic | 35.0% | |
! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_1:8511222-8511241 | None:intergenic | 35.0% |
! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_1:8511223-8511242 | None:intergenic | 35.0% |
TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_1:8511290-8511309 | None:intergenic | 35.0% | |
! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_1:8511302-8511321 | None:intergenic | 35.0% |
TATCGGCAAATCCTACAATT+AGG | + | chr6_1:8511490-8511509 | Msa0872900:CDS | 35.0% | |
TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_1:8511555-8511574 | Msa0872900:CDS | 35.0% | |
!! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_1:8511730-8511749 | Msa0872900:CDS | 35.0% |
!! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_1:8511731-8511750 | Msa0872900:CDS | 35.0% |
TCATCATCAATGTCATCATC+GGG | - | chr6_1:8511837-8511856 | None:intergenic | 35.0% | |
! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_1:8511893-8511912 | Msa0872900:CDS | 35.0% |
TTGGAATTGGATCTTCAAAG+TGG | + | chr6_1:8511906-8511925 | Msa0872900:CDS | 35.0% | |
!!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_1:8511962-8511981 | Msa0872900:CDS | 35.0% |
! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_1:8512061-8512080 | Msa0872900:CDS | 35.0% |
AGCATTGCAATTTCGAACAT+TGG | + | chr6_1:8512147-8512166 | Msa0872900:CDS | 35.0% | |
!! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_1:8512156-8512175 | Msa0872900:CDS | 35.0% |
CGATCACATTTATTTCAGCG+TGG | + | chr6_1:8511113-8511132 | Msa0872900:CDS | 40.0% | |
TACCACTCCCTTATAACAAG+AGG | + | chr6_1:8511292-8511311 | Msa0872900:CDS | 40.0% | |
! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_1:8511303-8511322 | None:intergenic | 40.0% |
CCTTATAACAAGAGGCTTTG+TGG | + | chr6_1:8511300-8511319 | Msa0872900:CDS | 40.0% | |
TTTGTGGTTCAAGTCATGGT+TGG | + | chr6_1:8511316-8511335 | Msa0872900:CDS | 40.0% | |
TTGTGGTTCAAGTCATGGTT+GGG | + | chr6_1:8511317-8511336 | Msa0872900:CDS | 40.0% | |
TAATCGTGAGGCCTAATTGT+AGG | - | chr6_1:8511504-8511523 | None:intergenic | 40.0% | |
GCAACTACAACATAATCGTG+AGG | - | chr6_1:8511516-8511535 | None:intergenic | 40.0% | |
!! | TAAAGGGTTAGTCTATGCTG+CGG | + | chr6_1:8511638-8511657 | Msa0872900:CDS | 40.0% |
!! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_1:8511732-8511751 | Msa0872900:CDS | 40.0% |
!! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_1:8511733-8511752 | Msa0872900:CDS | 40.0% |
!! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_1:8511734-8511753 | Msa0872900:CDS | 40.0% |
! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_1:8511858-8511877 | Msa0872900:CDS | 40.0% |
!!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_1:8512002-8512021 | Msa0872900:CDS | 40.0% |
TCAAATGGTCCATTAGGGTA+AGG | - | chr6_1:8512089-8512108 | None:intergenic | 40.0% | |
CGATCACATTTATTTCAGCG+TGG | + | chr6_1:8511113-8511132 | Msa0872900:CDS | 40.0% | |
TACCACTCCCTTATAACAAG+AGG | + | chr6_1:8511292-8511311 | Msa0872900:CDS | 40.0% | |
! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_1:8511303-8511322 | None:intergenic | 40.0% |
CCTTATAACAAGAGGCTTTG+TGG | + | chr6_1:8511300-8511319 | Msa0872900:CDS | 40.0% | |
TTTGTGGTTCAAGTCATGGT+TGG | + | chr6_1:8511316-8511335 | Msa0872900:CDS | 40.0% | |
TTGTGGTTCAAGTCATGGTT+GGG | + | chr6_1:8511317-8511336 | Msa0872900:CDS | 40.0% | |
TAATCGTGAGGCCTAATTGT+AGG | - | chr6_1:8511504-8511523 | None:intergenic | 40.0% | |
GCAACTACAACATAATCGTG+AGG | - | chr6_1:8511516-8511535 | None:intergenic | 40.0% | |
!! | TAAAGGGTTAGTCTATGCTG+CGG | + | chr6_1:8511638-8511657 | Msa0872900:CDS | 40.0% |
!! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_1:8511732-8511751 | Msa0872900:CDS | 40.0% |
!! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_1:8511733-8511752 | Msa0872900:CDS | 40.0% |
!! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_1:8511734-8511753 | Msa0872900:CDS | 40.0% |
! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_1:8511858-8511877 | Msa0872900:CDS | 40.0% |
!!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_1:8512002-8512021 | Msa0872900:CDS | 40.0% |
TCAAATGGTCCATTAGGGTA+AGG | - | chr6_1:8512089-8512108 | None:intergenic | 40.0% | |
TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_1:8511127-8511146 | Msa0872900:CDS | 45.0% | |
AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_1:8511284-8511303 | None:intergenic | 45.0% | |
! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_1:8511297-8511316 | None:intergenic | 45.0% |
! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_1:8511312-8511331 | Msa0872900:CDS | 45.0% |
AAGTCATGGTTGGGTAGCAA+AGG | + | chr6_1:8511326-8511345 | Msa0872900:CDS | 45.0% | |
ATATCTGGCATGTAGATGGG+TGG | - | chr6_1:8511423-8511442 | None:intergenic | 45.0% | |
!! | AAAGGGTTAGTCTATGCTGC+GGG | + | chr6_1:8511639-8511658 | Msa0872900:CDS | 45.0% |
CCCCATGGTGAAACAACATT+AGG | - | chr6_1:8511735-8511754 | None:intergenic | 45.0% | |
AATCATTGGAGGGAGACTTG+TGG | + | chr6_1:8511787-8511806 | Msa0872900:CDS | 45.0% | |
TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_1:8511127-8511146 | Msa0872900:CDS | 45.0% | |
AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_1:8511284-8511303 | None:intergenic | 45.0% | |
! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_1:8511297-8511316 | None:intergenic | 45.0% |
! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_1:8511312-8511331 | Msa0872900:CDS | 45.0% |
AAGTCATGGTTGGGTAGCAA+AGG | + | chr6_1:8511326-8511345 | Msa0872900:CDS | 45.0% | |
ATATCTGGCATGTAGATGGG+TGG | - | chr6_1:8511423-8511442 | None:intergenic | 45.0% | |
!! | AAAGGGTTAGTCTATGCTGC+GGG | + | chr6_1:8511639-8511658 | Msa0872900:CDS | 45.0% |
CCCCATGGTGAAACAACATT+AGG | - | chr6_1:8511735-8511754 | None:intergenic | 45.0% | |
AATCATTGGAGGGAGACTTG+TGG | + | chr6_1:8511787-8511806 | Msa0872900:CDS | 45.0% | |
TCATGGTTGGGTAGCAAAGG+TGG | + | chr6_1:8511329-8511348 | Msa0872900:CDS | 50.0% | |
GCATGTAGATGGGTGGTAGA+GGG | - | chr6_1:8511416-8511435 | None:intergenic | 50.0% | |
TGAGCAAAATCATCCCCCCA+TGG | - | chr6_1:8511750-8511769 | None:intergenic | 50.0% | |
! | AGGGAGACTTGTGGCTTGTA+AGG | + | chr6_1:8511796-8511815 | Msa0872900:CDS | 50.0% |
GGTCCATTAGGGTAAGGATC+CGG | - | chr6_1:8512083-8512102 | None:intergenic | 50.0% | |
GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_1:8512196-8512215 | Msa0872900:CDS | 50.0% | |
TCATGGTTGGGTAGCAAAGG+TGG | + | chr6_1:8511329-8511348 | Msa0872900:CDS | 50.0% | |
GCATGTAGATGGGTGGTAGA+GGG | - | chr6_1:8511416-8511435 | None:intergenic | 50.0% | |
TGAGCAAAATCATCCCCCCA+TGG | - | chr6_1:8511750-8511769 | None:intergenic | 50.0% | |
! | AGGGAGACTTGTGGCTTGTA+AGG | + | chr6_1:8511796-8511815 | Msa0872900:CDS | 50.0% |
GGTCCATTAGGGTAAGGATC+CGG | - | chr6_1:8512083-8512102 | None:intergenic | 50.0% | |
GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_1:8512196-8512215 | Msa0872900:CDS | 50.0% | |
GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_1:8511412-8511431 | None:intergenic | 55.0% | |
GGCATGTAGATGGGTGGTAG+AGG | - | chr6_1:8511417-8511436 | None:intergenic | 55.0% | |
!! | GGTTAGTCTATGCTGCGGGA+CGG | + | chr6_1:8511643-8511662 | Msa0872900:CDS | 55.0% |
GCACCGGATCCTTACCCTAA+TGG | + | chr6_1:8512077-8512096 | Msa0872900:CDS | 55.0% | |
GTTCACACGGATGCCACCTT+CGG | + | chr6_1:8512169-8512188 | Msa0872900:CDS | 55.0% | |
GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_1:8512195-8512214 | Msa0872900:CDS | 55.0% | |
GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_1:8511412-8511431 | None:intergenic | 55.0% | |
GGCATGTAGATGGGTGGTAG+AGG | - | chr6_1:8511417-8511436 | None:intergenic | 55.0% | |
!! | GGTTAGTCTATGCTGCGGGA+CGG | + | chr6_1:8511643-8511662 | Msa0872900:CDS | 55.0% |
GCACCGGATCCTTACCCTAA+TGG | + | chr6_1:8512077-8512096 | Msa0872900:CDS | 55.0% | |
GTTCACACGGATGCCACCTT+CGG | + | chr6_1:8512169-8512188 | Msa0872900:CDS | 55.0% | |
GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_1:8512195-8512214 | Msa0872900:CDS | 55.0% | |
TAGTCTATGCTGCGGGACGG+TGG | + | chr6_1:8511646-8511665 | Msa0872900:CDS | 60.0% | |
! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_1:8512175-8512194 | Msa0872900:CDS | 60.0% |
GGAAGAACCCACACCGAAGG+TGG | - | chr6_1:8512185-8512204 | None:intergenic | 60.0% | |
TAGTCTATGCTGCGGGACGG+TGG | + | chr6_1:8511646-8511665 | Msa0872900:CDS | 60.0% | |
! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_1:8512175-8512194 | Msa0872900:CDS | 60.0% |
GGAAGAACCCACACCGAAGG+TGG | - | chr6_1:8512185-8512204 | None:intergenic | 60.0% | |
CACGGATGCCACCTTCGGTG+TGG | + | chr6_1:8512174-8512193 | Msa0872900:CDS | 65.0% | |
GGCGGAAGAACCCACACCGA+AGG | - | chr6_1:8512188-8512207 | None:intergenic | 65.0% | |
CACGGATGCCACCTTCGGTG+TGG | + | chr6_1:8512174-8512193 | Msa0872900:CDS | 65.0% | |
GGCGGAAGAACCCACACCGA+AGG | - | chr6_1:8512188-8512207 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 8511039 | 8512223 | 8511039 | ID=Msa0872900;Name=Msa0872900 |
chr6_1 | mRNA | 8511039 | 8512223 | 8511039 | ID=Msa0872900-mRNA-1;Parent=Msa0872900;Name=Msa0872900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394 |
chr6_1 | exon | 8511039 | 8512223 | 8511039 | ID=Msa0872900-mRNA-1:exon:2575;Parent=Msa0872900-mRNA-1 |
chr6_1 | CDS | 8511039 | 8512223 | 8511039 | ID=Msa0872900-mRNA-1:cds;Parent=Msa0872900-mRNA-1 |
Gene Sequence |
Protein sequence |