Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938200 | A0A072VKT8 | 73.815 | 401 | 92 | 5 | 4 | 394 | 3 | 400 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0872900 | Msa0938200 | 0.835861 | 1.311528e-56 | -8.615850e-47 |
| Msa0906190 | Msa0938200 | 0.807165 | 5.774837e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938200 | MtrunA17_Chr1g0181301 | 73.815 | 401 | 92 | 5 | 4 | 394 | 3 | 400 | 0.0 | 595 |
| Msa0938200 | MtrunA17_Chr5g0415931 | 52.672 | 393 | 166 | 8 | 5 | 393 | 6 | 382 | 1.08e-140 | 405 |
| Msa0938200 | MtrunA17_Chr5g0415901 | 46.410 | 390 | 142 | 8 | 5 | 392 | 4 | 328 | 2.15e-113 | 334 |
| Msa0938200 | MtrunA17_Chr1g0208731 | 43.216 | 398 | 166 | 11 | 1 | 392 | 1 | 344 | 1.24e-85 | 264 |
| Msa0938200 | MtrunA17_Chr5g0437231 | 48.571 | 315 | 133 | 9 | 5 | 318 | 4 | 290 | 6.05e-82 | 252 |
| Msa0938200 | MtrunA17_Chr7g0247701 | 40.049 | 412 | 185 | 17 | 1 | 392 | 1 | 370 | 4.15e-74 | 236 |
| Msa0938200 | MtrunA17_Chr7g0247731 | 40.714 | 420 | 171 | 16 | 1 | 394 | 1 | 368 | 6.27e-74 | 234 |
| Msa0938200 | MtrunA17_Chr7g0247721 | 39.953 | 428 | 167 | 18 | 1 | 394 | 39 | 410 | 2.10e-71 | 229 |
| Msa0938200 | MtrunA17_Chr5g0437241 | 42.807 | 285 | 129 | 6 | 80 | 361 | 1 | 254 | 1.44e-62 | 201 |
| Msa0938200 | MtrunA17_Chr6g0459631 | 78.571 | 112 | 20 | 1 | 117 | 224 | 41 | 152 | 6.86e-53 | 175 |
| Msa0938200 | MtrunA17_Chr6g0459631 | 83.871 | 62 | 10 | 0 | 333 | 394 | 149 | 210 | 9.29e-32 | 119 |
| Msa0938200 | MtrunA17_Chr7g0246641 | 42.345 | 307 | 130 | 14 | 95 | 394 | 4 | 270 | 9.71e-50 | 169 |
| Msa0938200 | MtrunA17_Chr1g0151451 | 45.274 | 201 | 83 | 5 | 1 | 190 | 1 | 185 | 3.25e-44 | 152 |
| Msa0938200 | MtrunA17_Chr3g0143621 | 27.179 | 390 | 228 | 18 | 3 | 366 | 21 | 380 | 1.12e-22 | 99.0 |
| Msa0938200 | MtrunA17_Chr7g0246651 | 35.955 | 178 | 94 | 6 | 95 | 263 | 45 | 211 | 1.58e-22 | 94.7 |
| Msa0938200 | MtrunA17_Chr7g0246661 | 36.842 | 133 | 66 | 3 | 176 | 301 | 8 | 129 | 8.70e-15 | 70.9 |
| Msa0938200 | MtrunA17_Chr8g0371101 | 25.954 | 393 | 221 | 16 | 2 | 366 | 3 | 353 | 5.64e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCGGCTTCGTATTT+TGG | 0.208690 | 6_3:+9954420 | Msa0938200:CDS |
| AATGTTAAAGCTTGATAGTT+TGG | 0.243559 | 6_3:+9954359 | Msa0938200:CDS |
| TAAAAGCTGGACAAAAGTTT+TGG | 0.255927 | 6_3:+9953986 | Msa0938200:CDS |
| TATGTTGTAGTTGCAATTTA+TGG | 0.256703 | 6_3:+9953940 | Msa0938200:CDS |
| CCACAAAGCCTCTTGTTATA+AGG | 0.264739 | 6_3:-9953718 | None:intergenic |
| TAGGGTTATTATTGTAAGTT+TGG | 0.266002 | 6_3:-9953779 | None:intergenic |
| TGGCTTGTAAGGAAATTTAT+TGG | 0.269879 | 6_3:+9954225 | Msa0938200:CDS |
| TGTTATAAGGGAGTGGTAAT+TGG | 0.273748 | 6_3:-9953705 | None:intergenic |
| TTCATATCAAATGGTCCATT+AGG | 0.289459 | 6_3:-9954510 | None:intergenic |
| TATCGGCAAATCCTACAATT+AGG | 0.290712 | 6_3:+9953908 | Msa0938200:CDS |
| CTAACTCTTCTATATATATC+TGG | 0.344601 | 6_3:-9953853 | None:intergenic |
| TCATATCAAATGGTCCATTA+GGG | 0.347171 | 6_3:-9954509 | None:intergenic |
| GTCAATGGAGGCAGTAGATT+GGG | 0.349372 | 6_3:+9953453 | None:intergenic |
| ATATATATCTGGCATGTAGA+TGG | 0.350445 | 6_3:-9953842 | None:intergenic |
| CGAAGTGTATAAGTTGGAAT+TGG | 0.356208 | 6_3:+9954311 | Msa0938200:CDS |
| AGAACAAAGAGATGTTTATA+TGG | 0.371045 | 6_3:+9953655 | Msa0938200:CDS |
| CCTTATAACAAGAGGCTTTG+TGG | 0.380145 | 6_3:+9953718 | Msa0938200:CDS |
| ATGTTAAAGCTTGATAGTTT+GGG | 0.382709 | 6_3:+9954360 | Msa0938200:CDS |
| TCCTAATGTTGTTTCACCAT+GGG | 0.397638 | 6_3:+9954149 | Msa0938200:CDS |
| AGGGAGACTTGTGGCTTGTA+AGG | 0.407147 | 6_3:+9954214 | Msa0938200:CDS |
| AGCTATTATTCCCACTGAAA+TGG | 0.414384 | 6_3:-9954624 | None:intergenic |
| CACAAAGCCTCTTGTTATAA+GGG | 0.423159 | 6_3:-9953717 | None:intergenic |
| TCAGCGTGGTATGCAAGAAT+TGG | 0.424757 | 6_3:+9953545 | Msa0938200:CDS |
| AAAGGGTTAGTCTATGTTGC+GGG | 0.436986 | 6_3:+9954057 | Msa0938200:CDS |
| TTGTGGTTCAAGTCATGGTT+GGG | 0.440074 | 6_3:+9953735 | Msa0938200:CDS |
| TGTCAATGGAGGCAGTAGAT+TGG | 0.445882 | 6_3:+9953452 | None:intergenic |
| TTATGAATGTAACGTTCATA+AGG | 0.448018 | 6_3:+9953879 | Msa0938200:CDS |
| TGTCTTGCTTTCATAAAAGC+TGG | 0.450654 | 6_3:+9953973 | Msa0938200:CDS |
| GAACAAAGAGATGTTTATAT+GGG | 0.454874 | 6_3:+9953656 | Msa0938200:CDS |
| AAAATCTATAATGTAAAAGA+TGG | 0.455567 | 6_3:+9954531 | Msa0938200:CDS |
| GTTCACACGGATGCCACCTT+CGG | 0.463341 | 6_3:+9954587 | Msa0938200:CDS |
| TAATCGTGAGGCCTAATTGT+AGG | 0.471723 | 6_3:-9953919 | None:intergenic |
| AAGATTCGAAGTGTATAAGT+TGG | 0.476468 | 6_3:+9954305 | Msa0938200:CDS |
| TTTGTGGTTCAAGTCATGGT+TGG | 0.477178 | 6_3:+9953734 | Msa0938200:CDS |
| GCACCGGATCCTTACCCTAA+TGG | 0.478062 | 6_3:+9954495 | Msa0938200:CDS |
| CCCCATGGTGAAACAACATT+AGG | 0.481080 | 6_3:-9954150 | None:intergenic |
| AGGCTTTGTGGTTCAAGTCA+TGG | 0.485655 | 6_3:+9953730 | Msa0938200:CDS |
| TTCATCATCAATGTCATCAT+CGG | 0.495737 | 6_3:-9954253 | None:intergenic |
| AGCATTGCAATTTCGAACAT+TGG | 0.498979 | 6_3:+9954565 | Msa0938200:CDS |
| TCATCATCAATGTCATCATC+GGG | 0.501772 | 6_3:-9954252 | None:intergenic |
| GGCATGTAGATGGGTGGTAG+AGG | 0.516014 | 6_3:-9953832 | None:intergenic |
| TTGATAACTAAACTTTGCAA+TGG | 0.525381 | 6_3:-9953572 | None:intergenic |
| AAGGGAGTGGTAATTGGAAG+TGG | 0.531731 | 6_3:-9953699 | None:intergenic |
| TAATGTTGTTTCACCATGGG+GGG | 0.533333 | 6_3:+9954152 | Msa0938200:CDS |
| CACGGATGCCACCTTCGGTG+TGG | 0.534966 | 6_3:+9954592 | Msa0938200:CDS |
| TCAAATGGTCCATTAGGGTA+AGG | 0.543154 | 6_3:-9954504 | None:intergenic |
| TTCCTAATGTTGTTTCACCA+TGG | 0.544368 | 6_3:+9954148 | Msa0938200:CDS |
| GGGTTCTTCCGCCATTTCAG+TGG | 0.545118 | 6_3:+9954613 | Msa0938200:CDS |
| GGTTCTTCCGCCATTTCAGT+GGG | 0.545364 | 6_3:+9954614 | Msa0938200:CDS |
| TACCACTCCCTTATAACAAG+AGG | 0.545416 | 6_3:+9953710 | Msa0938200:CDS |
| ACGGATGCCACCTTCGGTGT+GGG | 0.551054 | 6_3:+9954593 | Msa0938200:CDS |
| AGCCTCTTGTTATAAGGGAG+TGG | 0.552882 | 6_3:-9953712 | None:intergenic |
| TAGTCTATGTTGCGGGACGA+TGG | 0.555338 | 6_3:+9954064 | Msa0938200:CDS |
| TATATATCTGGCATGTAGAT+GGG | 0.560379 | 6_3:-9953841 | None:intergenic |
| GTAGATGGGTGGTAGAGGGA+TGG | 0.563925 | 6_3:-9953827 | None:intergenic |
| TTTGTGGGAATCATTAGCAT+AGG | 0.565295 | 6_3:-9953622 | None:intergenic |
| TCATGGTTGGGTAGCAAAGG+TGG | 0.565480 | 6_3:+9953747 | Msa0938200:CDS |
| TGATTATTTCGAAGAAGCAC+CGG | 0.570964 | 6_3:+9954479 | Msa0938200:CDS |
| TAAAGGGTTAGTCTATGTTG+CGG | 0.572948 | 6_3:+9954056 | Msa0938200:CDS |
| GGAAGAACCCACACCGAAGG+TGG | 0.579383 | 6_3:-9954600 | None:intergenic |
| GGTCCATTAGGGTAAGGATC+CGG | 0.584997 | 6_3:-9954498 | None:intergenic |
| TAGTGATTCTGTATCTATGT+CGG | 0.590343 | 6_3:+9954407 | Msa0938200:CDS |
| AAGTCATGGTTGGGTAGCAA+AGG | 0.591114 | 6_3:+9953744 | Msa0938200:CDS |
| CCTAATGTTGTTTCACCATG+GGG | 0.597547 | 6_3:+9954150 | Msa0938200:CDS |
| GCATGTAGATGGGTGGTAGA+GGG | 0.597842 | 6_3:-9953831 | None:intergenic |
| ATTTCGAACATTGGTTCACA+CGG | 0.602276 | 6_3:+9954574 | Msa0938200:CDS |
| GATAGTAACTTGCCTAGTAG+TGG | 0.603948 | 6_3:+9954276 | Msa0938200:CDS |
| TCAATGGAGGCAGTAGATTG+GGG | 0.615269 | 6_3:+9953454 | None:intergenic |
| GGCGGAAGAACCCACACCGA+AGG | 0.621085 | 6_3:-9954603 | None:intergenic |
| TGCTTCTTCGAAATAATCAT+CGG | 0.622108 | 6_3:-9954475 | None:intergenic |
| TATTATTCCCACTGAAATGG+CGG | 0.639125 | 6_3:-9954621 | None:intergenic |
| AATCATTGGAGGGAGACTTG+TGG | 0.640759 | 6_3:+9954205 | Msa0938200:CDS |
| TTGGAATTGGATCTTCAAAG+TGG | 0.643699 | 6_3:+9954324 | Msa0938200:CDS |
| CTAATGTTGTTTCACCATGG+GGG | 0.657132 | 6_3:+9954151 | Msa0938200:CDS |
| CGATCACATTTATTTCAGCG+TGG | 0.681214 | 6_3:+9953531 | Msa0938200:CDS |
| ATATCTGGCATGTAGATGGG+TGG | 0.682216 | 6_3:-9953838 | None:intergenic |
| GCAACTACAACATAATCGTG+AGG | 0.708433 | 6_3:-9953931 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGATGTTATATTTTATAA+AGG | + | chr6_3:9954039-9954058 | Msa0938200:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | + | chr6_3:9954040-9954059 | Msa0938200:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_3:9954522-9954541 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_3:9954531-9954550 | Msa0938200:CDS | 15.0% |
| !!! | AGTGATGTTATATTTTATAA+AGG | + | chr6_3:9954039-9954058 | Msa0938200:CDS | 15.0% |
| !!! | GTGATGTTATATTTTATAAA+GGG | + | chr6_3:9954040-9954059 | Msa0938200:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | - | chr6_3:9954522-9954541 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | + | chr6_3:9954531-9954550 | Msa0938200:CDS | 15.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_3:9953496-9953515 | None:intergenic | 20.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | - | chr6_3:9953603-9953622 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_3:9954437-9954456 | Msa0938200:CDS | 20.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | - | chr6_3:9953496-9953515 | None:intergenic | 20.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | - | chr6_3:9953603-9953622 | None:intergenic | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | + | chr6_3:9954437-9954456 | Msa0938200:CDS | 20.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_3:9953575-9953594 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_3:9953655-9953674 | Msa0938200:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_3:9953656-9953675 | Msa0938200:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | - | chr6_3:9953782-9953801 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_3:9953800-9953819 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_3:9953811-9953830 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | - | chr6_3:9953856-9953875 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | + | chr6_3:9953879-9953898 | Msa0938200:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_3:9953891-9953910 | Msa0938200:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_3:9953940-9953959 | Msa0938200:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_3:9954101-9954120 | Msa0938200:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_3:9954191-9954210 | Msa0938200:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_3:9954194-9954213 | Msa0938200:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_3:9954195-9954214 | Msa0938200:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_3:9954359-9954378 | Msa0938200:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_3:9954360-9954379 | Msa0938200:CDS | 25.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | - | chr6_3:9953575-9953594 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | + | chr6_3:9953655-9953674 | Msa0938200:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | + | chr6_3:9953656-9953675 | Msa0938200:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | - | chr6_3:9953782-9953801 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | - | chr6_3:9953800-9953819 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | - | chr6_3:9953811-9953830 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | - | chr6_3:9953856-9953875 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | + | chr6_3:9953879-9953898 | Msa0938200:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | + | chr6_3:9953891-9953910 | Msa0938200:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | + | chr6_3:9953940-9953959 | Msa0938200:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | + | chr6_3:9954101-9954120 | Msa0938200:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | + | chr6_3:9954191-9954210 | Msa0938200:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | + | chr6_3:9954194-9954213 | Msa0938200:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | + | chr6_3:9954195-9954214 | Msa0938200:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | + | chr6_3:9954359-9954378 | Msa0938200:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | + | chr6_3:9954360-9954379 | Msa0938200:CDS | 25.0% |
| TAATGATTCCCACAAAAAGA+AGG | + | chr6_3:9953629-9953648 | Msa0938200:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_3:9953689-9953708 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_3:9953801-9953820 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_3:9953812-9953831 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | - | chr6_3:9953844-9953863 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | - | chr6_3:9953845-9953864 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_3:9953986-9954005 | Msa0938200:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | + | chr6_3:9954225-9954244 | Msa0938200:CDS | 30.0% |
| TTCATCATCAATGTCATCAT+CGG | - | chr6_3:9954256-9954275 | None:intergenic | 30.0% | |
| ! | AATCTTTTAGTACCACTACT+AGG | - | chr6_3:9954291-9954310 | None:intergenic | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | + | chr6_3:9954305-9954324 | Msa0938200:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_3:9954381-9954400 | Msa0938200:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | + | chr6_3:9954407-9954426 | Msa0938200:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | - | chr6_3:9954478-9954497 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | - | chr6_3:9954512-9954531 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | - | chr6_3:9954513-9954532 | None:intergenic | 30.0% | |
| TAATGATTCCCACAAAAAGA+AGG | + | chr6_3:9953629-9953648 | Msa0938200:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | - | chr6_3:9953689-9953708 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | - | chr6_3:9953801-9953820 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | - | chr6_3:9953812-9953831 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | - | chr6_3:9953844-9953863 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | - | chr6_3:9953845-9953864 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | + | chr6_3:9953986-9954005 | Msa0938200:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | + | chr6_3:9954225-9954244 | Msa0938200:CDS | 30.0% |
| TTCATCATCAATGTCATCAT+CGG | - | chr6_3:9954256-9954275 | None:intergenic | 30.0% | |
| ! | AATCTTTTAGTACCACTACT+AGG | - | chr6_3:9954291-9954310 | None:intergenic | 30.0% |
| AAGATTCGAAGTGTATAAGT+TGG | + | chr6_3:9954305-9954324 | Msa0938200:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | + | chr6_3:9954381-9954400 | Msa0938200:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | + | chr6_3:9954407-9954426 | Msa0938200:CDS | 30.0% | |
| TGCTTCTTCGAAATAATCAT+CGG | - | chr6_3:9954478-9954497 | None:intergenic | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | - | chr6_3:9954512-9954531 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | - | chr6_3:9954513-9954532 | None:intergenic | 30.0% | |
| TTTGTGGGAATCATTAGCAT+AGG | - | chr6_3:9953625-9953644 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_3:9953640-9953659 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_3:9953641-9953660 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_3:9953708-9953727 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_3:9953720-9953739 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | + | chr6_3:9953908-9953927 | Msa0938200:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_3:9953973-9953992 | Msa0938200:CDS | 35.0% | |
| !! | TAAAGGGTTAGTCTATGTTG+CGG | + | chr6_3:9954056-9954075 | Msa0938200:CDS | 35.0% |
| !! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_3:9954148-9954167 | Msa0938200:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_3:9954149-9954168 | Msa0938200:CDS | 35.0% |
| TCATCATCAATGTCATCATC+GGG | - | chr6_3:9954255-9954274 | None:intergenic | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_3:9954311-9954330 | Msa0938200:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | + | chr6_3:9954324-9954343 | Msa0938200:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_3:9954380-9954399 | Msa0938200:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_3:9954479-9954498 | Msa0938200:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | + | chr6_3:9954565-9954584 | Msa0938200:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_3:9954574-9954593 | Msa0938200:CDS | 35.0% |
| TTTGTGGGAATCATTAGCAT+AGG | - | chr6_3:9953625-9953644 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | - | chr6_3:9953640-9953659 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | - | chr6_3:9953641-9953660 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | - | chr6_3:9953708-9953727 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | - | chr6_3:9953720-9953739 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | + | chr6_3:9953908-9953927 | Msa0938200:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | + | chr6_3:9953973-9953992 | Msa0938200:CDS | 35.0% | |
| !! | TAAAGGGTTAGTCTATGTTG+CGG | + | chr6_3:9954056-9954075 | Msa0938200:CDS | 35.0% |
| !! | TTCCTAATGTTGTTTCACCA+TGG | + | chr6_3:9954148-9954167 | Msa0938200:CDS | 35.0% |
| !! | TCCTAATGTTGTTTCACCAT+GGG | + | chr6_3:9954149-9954168 | Msa0938200:CDS | 35.0% |
| TCATCATCAATGTCATCATC+GGG | - | chr6_3:9954255-9954274 | None:intergenic | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr6_3:9954311-9954330 | Msa0938200:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | + | chr6_3:9954324-9954343 | Msa0938200:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | + | chr6_3:9954380-9954399 | Msa0938200:CDS | 35.0% |
| ! | TGATTATTTCGAAGAAGCAC+CGG | + | chr6_3:9954479-9954498 | Msa0938200:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | + | chr6_3:9954565-9954584 | Msa0938200:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | + | chr6_3:9954574-9954593 | Msa0938200:CDS | 35.0% |
| CGATCACATTTATTTCAGCG+TGG | + | chr6_3:9953531-9953550 | Msa0938200:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | + | chr6_3:9953710-9953729 | Msa0938200:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_3:9953721-9953740 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | + | chr6_3:9953718-9953737 | Msa0938200:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | + | chr6_3:9953734-9953753 | Msa0938200:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | + | chr6_3:9953735-9953754 | Msa0938200:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | - | chr6_3:9953922-9953941 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | - | chr6_3:9953934-9953953 | None:intergenic | 40.0% | |
| !! | AAAGGGTTAGTCTATGTTGC+GGG | + | chr6_3:9954057-9954076 | Msa0938200:CDS | 40.0% |
| !! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_3:9954150-9954169 | Msa0938200:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_3:9954151-9954170 | Msa0938200:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_3:9954152-9954171 | Msa0938200:CDS | 40.0% |
| ! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_3:9954276-9954295 | Msa0938200:CDS | 40.0% |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_3:9954420-9954439 | Msa0938200:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | - | chr6_3:9954507-9954526 | None:intergenic | 40.0% | |
| CGATCACATTTATTTCAGCG+TGG | + | chr6_3:9953531-9953550 | Msa0938200:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | + | chr6_3:9953710-9953729 | Msa0938200:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | - | chr6_3:9953721-9953740 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | + | chr6_3:9953718-9953737 | Msa0938200:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | + | chr6_3:9953734-9953753 | Msa0938200:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | + | chr6_3:9953735-9953754 | Msa0938200:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | - | chr6_3:9953922-9953941 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | - | chr6_3:9953934-9953953 | None:intergenic | 40.0% | |
| !! | AAAGGGTTAGTCTATGTTGC+GGG | + | chr6_3:9954057-9954076 | Msa0938200:CDS | 40.0% |
| !! | CCTAATGTTGTTTCACCATG+GGG | + | chr6_3:9954150-9954169 | Msa0938200:CDS | 40.0% |
| !! | CTAATGTTGTTTCACCATGG+GGG | + | chr6_3:9954151-9954170 | Msa0938200:CDS | 40.0% |
| !! | TAATGTTGTTTCACCATGGG+GGG | + | chr6_3:9954152-9954171 | Msa0938200:CDS | 40.0% |
| ! | GATAGTAACTTGCCTAGTAG+TGG | + | chr6_3:9954276-9954295 | Msa0938200:CDS | 40.0% |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | + | chr6_3:9954420-9954439 | Msa0938200:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | - | chr6_3:9954507-9954526 | None:intergenic | 40.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_3:9953545-9953564 | Msa0938200:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_3:9953702-9953721 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_3:9953715-9953734 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_3:9953730-9953749 | Msa0938200:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | + | chr6_3:9953744-9953763 | Msa0938200:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | - | chr6_3:9953841-9953860 | None:intergenic | 45.0% | |
| CCCCATGGTGAAACAACATT+AGG | - | chr6_3:9954153-9954172 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | + | chr6_3:9954205-9954224 | Msa0938200:CDS | 45.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | + | chr6_3:9953545-9953564 | Msa0938200:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | - | chr6_3:9953702-9953721 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | - | chr6_3:9953715-9953734 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | + | chr6_3:9953730-9953749 | Msa0938200:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | + | chr6_3:9953744-9953763 | Msa0938200:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | - | chr6_3:9953841-9953860 | None:intergenic | 45.0% | |
| CCCCATGGTGAAACAACATT+AGG | - | chr6_3:9954153-9954172 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | + | chr6_3:9954205-9954224 | Msa0938200:CDS | 45.0% | |
| TCATGGTTGGGTAGCAAAGG+TGG | + | chr6_3:9953747-9953766 | Msa0938200:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr6_3:9953834-9953853 | None:intergenic | 50.0% | |
| TAGTCTATGTTGCGGGACGA+TGG | + | chr6_3:9954064-9954083 | Msa0938200:CDS | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | - | chr6_3:9954168-9954187 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | + | chr6_3:9954214-9954233 | Msa0938200:CDS | 50.0% |
| GGTCCATTAGGGTAAGGATC+CGG | - | chr6_3:9954501-9954520 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_3:9954614-9954633 | Msa0938200:CDS | 50.0% | |
| TCATGGTTGGGTAGCAAAGG+TGG | + | chr6_3:9953747-9953766 | Msa0938200:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr6_3:9953834-9953853 | None:intergenic | 50.0% | |
| TAGTCTATGTTGCGGGACGA+TGG | + | chr6_3:9954064-9954083 | Msa0938200:CDS | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | - | chr6_3:9954168-9954187 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | + | chr6_3:9954214-9954233 | Msa0938200:CDS | 50.0% |
| GGTCCATTAGGGTAAGGATC+CGG | - | chr6_3:9954501-9954520 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | + | chr6_3:9954614-9954633 | Msa0938200:CDS | 50.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_3:9953830-9953849 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr6_3:9953835-9953854 | None:intergenic | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | + | chr6_3:9954495-9954514 | Msa0938200:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | + | chr6_3:9954587-9954606 | Msa0938200:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_3:9954613-9954632 | Msa0938200:CDS | 55.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | - | chr6_3:9953830-9953849 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr6_3:9953835-9953854 | None:intergenic | 55.0% | |
| GCACCGGATCCTTACCCTAA+TGG | + | chr6_3:9954495-9954514 | Msa0938200:CDS | 55.0% | |
| GTTCACACGGATGCCACCTT+CGG | + | chr6_3:9954587-9954606 | Msa0938200:CDS | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | + | chr6_3:9954613-9954632 | Msa0938200:CDS | 55.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_3:9954593-9954612 | Msa0938200:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | - | chr6_3:9954603-9954622 | None:intergenic | 60.0% | |
| ! | ACGGATGCCACCTTCGGTGT+GGG | + | chr6_3:9954593-9954612 | Msa0938200:CDS | 60.0% |
| GGAAGAACCCACACCGAAGG+TGG | - | chr6_3:9954603-9954622 | None:intergenic | 60.0% | |
| CACGGATGCCACCTTCGGTG+TGG | + | chr6_3:9954592-9954611 | Msa0938200:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | - | chr6_3:9954606-9954625 | None:intergenic | 65.0% | |
| CACGGATGCCACCTTCGGTG+TGG | + | chr6_3:9954592-9954611 | Msa0938200:CDS | 65.0% | |
| GGCGGAAGAACCCACACCGA+AGG | - | chr6_3:9954606-9954625 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 9953457 | 9954641 | 9953457 | ID=Msa0938200;Name=Msa0938200 |
| chr6_3 | mRNA | 9953457 | 9954641 | 9953457 | ID=Msa0938200-mRNA-1;Parent=Msa0938200;Name=Msa0938200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394 |
| chr6_3 | exon | 9953457 | 9954641 | 9953457 | ID=Msa0938200-mRNA-1:exon:3127;Parent=Msa0938200-mRNA-1 |
| chr6_3 | CDS | 9953457 | 9954641 | 9953457 | ID=Msa0938200-mRNA-1:cds;Parent=Msa0938200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
