AlfalfaGEDB | Msa0875060

M. sativa cultivar zhongmu-4 / Msa0875060

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0875060	XP_013451153.2	90.444	586	55	1	1	586	1	585	0.0	1063

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0875060	sp\|Q9LVL5\|WNK4_ARATH	56.591	569	231	7	19	583	9	565	0.0	607

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0875060	A0A396HCB4	90.444	586	55	1	1	586	1	585	0.0	1063

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0875060	Msa1270730	0.804028	2.629635e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0875060	MtrunA17_Chr6g0455931	90.444	586	55	1	1	586	1	585	0.0	1063
Msa0875060	MtrunA17_Chr5g0432541	66.090	578	170	4	14	580	12	574	0.0	765
Msa0875060	MtrunA17_Chr4g0013051	51.320	606	253	11	13	577	8	612	4.35e-178	518
Msa0875060	MtrunA17_Chr7g0244601	47.199	589	280	10	14	577	13	595	1.47e-175	511
Msa0875060	MtrunA17_Chr1g0205471	55.059	425	145	8	15	398	9	428	3.80e-154	460
Msa0875060	MtrunA17_Chr1g0190951	54.439	428	149	7	16	399	11	436	7.85e-154	460
Msa0875060	MtrunA17_Chr7g0273851	54.610	423	148	7	19	399	14	434	1.12e-152	457
Msa0875060	MtrunA17_Chr3g0116811	56.566	396	162	4	12	399	9	402	6.09e-144	429
Msa0875060	MtrunA17_Chr3g0119911	51.422	422	168	5	20	406	11	430	1.34e-132	401
Msa0875060	MtrunA17_Chr3g0129771	47.765	425	175	4	20	399	24	446	2.45e-129	394

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0875060	AT5G58350.1	56.591	569	231	7	19	583	9	565	0.0	607
Msa0875060	AT3G48260.1	57.935	397	159	5	7	401	2	392	7.27e-157	460
Msa0875060	AT3G22420.1	50.000	480	202	9	19	470	14	483	5.83e-155	457
Msa0875060	AT3G22420.4	50.000	480	202	9	19	470	85	554	2.36e-154	458
Msa0875060	AT5G28080.2	51.835	436	164	4	19	409	15	449	7.68e-153	449
Msa0875060	AT3G22420.6	47.358	511	201	10	19	470	14	515	3.31e-150	446
Msa0875060	AT3G22420.5	47.732	507	200	11	19	470	14	510	6.80e-149	443
Msa0875060	AT3G22420.3	47.732	507	200	11	19	470	85	581	1.96e-148	444
Msa0875060	AT3G22420.2	45.353	538	199	12	19	470	14	542	4.15e-144	432
Msa0875060	AT3G04910.1	64.912	285	98	2	19	302	14	297	2.45e-131	401

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Find 140 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACAACAACGATGGT+AGG	0.533267	6_1:-11098119	Msa0875060:CDS
AAACAAGACCGTGTAAGATT+TGG	0.388644	6_1:+11097004	None:intergenic
AAAGCAATTGATAAGGTCCT+TGG	0.456166	6_1:-11097367	Msa0875060:CDS
AAAGCCTTTCCAAGTCCTCT+GGG	0.491285	6_1:+11097296	None:intergenic
AAAGGACAACAACGATGGTA+GGG	0.585763	6_1:-11098118	Msa0875060:CDS
AAAGGAGATGGTGAAAGAGT+TGG	0.580123	6_1:-11095969	Msa0875060:CDS
AAATGCAGCAAGGAGACCAT+CGG	0.630426	6_1:-11096389	Msa0875060:CDS
AAATTGATAAGCTTCAACTG+AGG	0.604007	6_1:-11096273	Msa0875060:CDS
AACTCTGGTGCCATGAACTC+CGG	0.489663	6_1:+11096699	None:intergenic
AACTGAGGGGCGATTCATCT+AGG	0.511751	6_1:-11096258	Msa0875060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGGAAATATTCTTGGAAA+AGG	-	chr6_1:11095909-11095928	Msa0875060:CDS	30.0%
TGGAAATATTCTTGGAAAAG+GGG	-	chr6_1:11095911-11095930	Msa0875060:CDS	30.0%
AGTGCATAAAGCAATTGATA+AGG	-	chr6_1:11095944-11095963	Msa0875060:CDS	30.0%
CATTACAGAAATGTTCACTT+CGG	-	chr6_1:11096139-11096158	Msa0875060:intron	30.0%
ATTACAGAAATGTTCACTTC+GGG	-	chr6_1:11096140-11096159	Msa0875060:intron	30.0%
CAAATATGTTATCGCATTTG+AGG	+	chr6_1:11096377-11096396	None:intergenic	30.0%
TGCGATAACATATTTGTCAA+TGG	-	chr6_1:11096381-11096400	Msa0875060:CDS	30.0%
GGTATACCAACTCATATTAT+AGG	-	chr6_1:11096522-11096541	Msa0875060:intron	30.0%
ATGTAGCCTATAATATGAGT+TGG	+	chr6_1:11096531-11096550	None:intergenic	30.0%
TTAACGCACAATAATTACAG+CGG	+	chr6_1:11096574-11096593	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	11095168	11098172	11095168	ID=Msa0875060;Name=Msa0875060
chr6_1	mRNA	11095168	11098172	11095168	ID=Msa0875060-mRNA-1;Parent=Msa0875060;Name=Msa0875060-mRNA-1;_AED=0.08;_eAED=0.12;_QI=12\|1\|0.71\|1\|1\|1\|7\|0\|610
chr6_1	exon	11095168	11095649	11095168	ID=Msa0875060-mRNA-1:exon:3466;Parent=Msa0875060-mRNA-1
chr6_1	exon	11095744	11096052	11095744	ID=Msa0875060-mRNA-1:exon:3465;Parent=Msa0875060-mRNA-1
chr6_1	exon	11096179	11096482	11096179	ID=Msa0875060-mRNA-1:exon:3464;Parent=Msa0875060-mRNA-1
chr6_1	exon	11096569	11096726	11096569	ID=Msa0875060-mRNA-1:exon:3463;Parent=Msa0875060-mRNA-1
chr6_1	exon	11096857	11097080	11096857	ID=Msa0875060-mRNA-1:exon:3462;Parent=Msa0875060-mRNA-1
chr6_1	exon	11097166	11097431	11097166	ID=Msa0875060-mRNA-1:exon:3461;Parent=Msa0875060-mRNA-1
chr6_1	exon	11098071	11098172	11098071	ID=Msa0875060-mRNA-1:exon:3460;Parent=Msa0875060-mRNA-1
chr6_1	five_prime_UTR	11098161	11098172	11098161	ID=Msa0875060-mRNA-1:five_prime_utr;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11098071	11098160	11098071	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11097166	11097431	11097166	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11096857	11097080	11096857	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11096569	11096726	11096569	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11096179	11096482	11096179	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11095744	11096052	11095744	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1
chr6_1	CDS	11095168	11095649	11095168	ID=Msa0875060-mRNA-1:cds;Parent=Msa0875060-mRNA-1

Gene Sequence

>Msa0875060

ATGTATTATTGTAATCATAAAAAGGACAACAACGATGGTAGGGCTGAGCAGAGTTACATGGAAACTGACCCAACTGGTCGCTATGCCAAGGTTGGAAATATTCTTGGAAAAGGGGCAATGAAAACAGTGCATAAAGCAATTGATAAGGTCCTTGGAATAGAGGTAGCATGGAACCAAGTCAAGCTCAGTGAAGCACTTCGTACCCCAGAGGACTTGGAAAGGCTTTATTTAGAGGTTCATCTCCTCAGCAACCTCAAACACCAATCCATCATGCAATTCTATACCTCGTGGATTGATGTCGACAACCTCACTTTCAACTTCATTACAGAAATGTTCACTTCGGGGACACTTAGAGAATACAGGAAGAACTATCAGCATGTAGGCATGCAAGCAATAAAGAGTTGGGCTCGCCAAATCTTACACGGTCTTGTTTATCTACACGAGCATGATCCTCCGGTAATTCATAGGGACCTCAAATGCGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGCGACCTGGGTCTAGCAGCAATTCTTCGTGGTTCGCAGCCGGCACACAGTGTCATAGGAACCCCGGAGTTCATGGCACCAGAGTTGTACGAAGAAGAATACAATGAACTTGTCGATGTGTACTCATTTGGCATGTGTGTATTGGAAATTATGACATCAGACTATCCATATAGTGAGTGTACTAACCCGGCACAGATATACAAGAAAGTGACATCGGGTAAGTTACCAGCAACACTTTTCCAGATTGAAGATGCAGAAGCACGGGCGTTTATCAGAAAATGCCTAGTAAATGCAGCAAGGAGACCATCGGCAAAAGAACTATTGCATGATCCATTTCTTGTGTCTGATTATGAATCGTCAATAACAGTAATTGGAATGCAGGATCCATTTTTAAACTACACTGAAATTGATAAGCTTCAACTGAGGGGCGATTCATCTAGGACTTCAATGTCAATAACTGGGAAGCGGAATCCTGACGATGATGCTATCTTTCTCAAAGTGCAGATTGTTGACAAGAACGGTTCTGCTAGGAATGTATATTTTCCCTTTGAAATTTTCACTGACACCCCAATTGATGTTGCAAAGGAGATGGTGAAAGAGTTGGACATCACAGATTGGGATCCTTCTGAAATTGCTTCTATGATTGAAGCAGAGATATCCATGCTACTTCCAGATAGGACAAACAATTGTCAGGATGATGAAAATGATGAAGGTCCTCATCAATATCATCATTTTCCGTCCGTCTCTTCTTGTTCATCGTCACAGGAATCATTGTCGGGTGCAGTCAATAGAGCTGATGACATATCAAATGGATATCGCTGGCAACATGAAGATATGTTTGATGATGCCAGCTCGCAATGCTCTTCACACGGGACATATTCCGACTTGAATTTTTCTTCTGCGGACGACCAGTATCATAACATGGCTTCTACAAGAAACGATAAACATCCCATCACAAGTCACAAATGTTCAAAGTTTTCACATGGTGAAGATCAACTCACCTTGAACCGGTGCAAAATGTTAGCCAGACCACAAGAACCTTCTACAAGTGAATGTGAGAAGATGATAGAGAATCGTATATTAACGAGGAACAAGTCACTAATTGATATGAGGAGCCAATTACTTCACCGATCACTCATTGAAGAGGTAAACAAAAGACGGTTATTCAAGACAGTTGGAGCTGTGGAAGATATTGGATATCAAACACCTTATAAGATTACAAGCAAAAAGTCACAGCCAGTATGTAGTAATTTCGACATTATCTCTTCAAGGAGGGGAAAGGAAGCTAACTTGAAAACTGAAGAGATTTAA

Protein sequence

>Msa0875060

MYYCNHKKDNNDGRAEQSYMETDPTGRYAKVGNILGKGAMKTVHKAIDKVLGIEVAWNQVKLSEALRTPEDLERLYLEVHLLSNLKHQSIMQFYTSWIDVDNLTFNFITEMFTSGTLREYRKNYQHVGMQAIKSWARQILHGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEIMTSDYPYSECTNPAQIYKKVTSGKLPATLFQIEDAEARAFIRKCLVNAARRPSAKELLHDPFLVSDYESSITVIGMQDPFLNYTEIDKLQLRGDSSRTSMSITGKRNPDDDAIFLKVQIVDKNGSARNVYFPFEIFTDTPIDVAKEMVKELDITDWDPSEIASMIEAEISMLLPDRTNNCQDDENDEGPHQYHHFPSVSSCSSSQESLSGAVNRADDISNGYRWQHEDMFDDASSQCSSHGTYSDLNFSSADDQYHNMASTRNDKHPITSHKCSKFSHGEDQLTLNRCKMLARPQEPSTSECEKMIENRILTRNKSLIDMRSQLLHRSLIEEVNKRRLFKTVGAVEDIGYQTPYKITSKKSQPVCSNFDIISSRRGKEANLKTEEI*