Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875140 | XP_013451171.1 | 99.820 | 555 | 1 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875140 | sp|Q9FWA4|GAUT9_ARATH | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875140 | G7ZV05 | 99.820 | 555 | 1 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021580 | Msa0875140 | 0.803652 | 3.147492e-49 | -8.615850e-47 |
| Msa0875140 | Msa1426710 | 0.803588 | 3.244569e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875140 | MtrunA17_Chr6g0456071 | 99.820 | 555 | 1 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| Msa0875140 | MtrunA17_Chr7g0235161 | 65.448 | 547 | 173 | 6 | 23 | 555 | 16 | 560 | 0.0 | 727 |
| Msa0875140 | MtrunA17_Chr8g0351091 | 47.771 | 471 | 226 | 8 | 85 | 553 | 158 | 610 | 1.41e-152 | 451 |
| Msa0875140 | MtrunA17_Chr7g0246371 | 48.511 | 470 | 222 | 8 | 85 | 553 | 212 | 662 | 3.36e-146 | 436 |
| Msa0875140 | MtrunA17_Chr2g0290961 | 49.261 | 406 | 201 | 4 | 149 | 553 | 264 | 665 | 2.80e-144 | 431 |
| Msa0875140 | MtrunA17_Chr3g0138381 | 50.777 | 386 | 188 | 2 | 169 | 553 | 279 | 663 | 4.92e-143 | 428 |
| Msa0875140 | MtrunA17_Chr8g0383241 | 46.814 | 408 | 207 | 5 | 149 | 554 | 91 | 490 | 9.88e-138 | 408 |
| Msa0875140 | MtrunA17_Chr2g0283461 | 42.292 | 480 | 254 | 9 | 78 | 553 | 72 | 532 | 5.24e-133 | 397 |
| Msa0875140 | MtrunA17_Chr4g0061711 | 45.455 | 407 | 213 | 5 | 149 | 551 | 131 | 532 | 1.66e-125 | 378 |
| Msa0875140 | MtrunA17_Chr2g0308241 | 44.039 | 411 | 221 | 5 | 148 | 554 | 130 | 535 | 1.54e-120 | 365 |
| Msa0875140 | MtrunA17_Chr2g0277591 | 39.130 | 483 | 241 | 11 | 78 | 553 | 72 | 508 | 2.85e-111 | 341 |
| Msa0875140 | MtrunA17_Chr2g0319311 | 40.136 | 441 | 232 | 10 | 136 | 553 | 108 | 539 | 2.99e-110 | 339 |
| Msa0875140 | MtrunA17_Chr7g0218571 | 39.903 | 411 | 227 | 6 | 161 | 552 | 125 | 534 | 3.19e-100 | 313 |
| Msa0875140 | MtrunA17_Chr4g0076011 | 38.670 | 406 | 213 | 8 | 178 | 552 | 70 | 470 | 4.47e-96 | 300 |
| Msa0875140 | MtrunA17_Chr6g0454101 | 39.903 | 411 | 227 | 6 | 161 | 552 | 120 | 529 | 5.61e-93 | 294 |
| Msa0875140 | MtrunA17_Chr7g0260711 | 40.000 | 355 | 183 | 5 | 202 | 553 | 325 | 652 | 1.96e-86 | 281 |
| Msa0875140 | MtrunA17_Chr1g0184751 | 40.616 | 357 | 180 | 6 | 202 | 553 | 268 | 597 | 2.77e-85 | 276 |
| Msa0875140 | MtrunA17_Chr3g0097091 | 37.405 | 393 | 220 | 10 | 177 | 551 | 142 | 526 | 6.57e-83 | 268 |
| Msa0875140 | MtrunA17_Chr4g0076331 | 48.990 | 198 | 71 | 3 | 358 | 552 | 1 | 171 | 2.04e-55 | 184 |
| Msa0875140 | MtrunA17_Chr7g0245621 | 34.324 | 370 | 208 | 9 | 193 | 552 | 298 | 642 | 1.63e-51 | 186 |
| Msa0875140 | MtrunA17_Chr4g0066331 | 31.414 | 191 | 122 | 6 | 359 | 540 | 145 | 335 | 4.07e-23 | 100 |
| Msa0875140 | MtrunA17_Chr3g0127611 | 30.526 | 190 | 124 | 5 | 359 | 540 | 140 | 329 | 7.62e-21 | 94.0 |
| Msa0875140 | MtrunA17_Chr7g0259321 | 30.857 | 175 | 116 | 4 | 359 | 528 | 151 | 325 | 2.84e-20 | 92.4 |
| Msa0875140 | MtrunA17_Chr7g0269751 | 30.814 | 172 | 114 | 4 | 359 | 525 | 159 | 330 | 4.79e-20 | 92.0 |
| Msa0875140 | MtrunA17_Chr6g0451981 | 26.351 | 296 | 178 | 10 | 240 | 525 | 74 | 339 | 1.05e-19 | 91.3 |
| Msa0875140 | MtrunA17_Chr5g0414981 | 29.534 | 193 | 123 | 6 | 359 | 540 | 180 | 370 | 3.05e-18 | 87.4 |
| Msa0875140 | MtrunA17_Chr1g0196511 | 29.474 | 190 | 126 | 5 | 359 | 540 | 154 | 343 | 1.19e-15 | 78.6 |
| Msa0875140 | MtrunA17_Chr1g0154521 | 29.688 | 192 | 125 | 6 | 359 | 540 | 165 | 356 | 1.41e-15 | 78.6 |
| Msa0875140 | MtrunA17_Chr3g0141321 | 27.225 | 191 | 130 | 5 | 359 | 540 | 139 | 329 | 5.02e-15 | 76.6 |
| Msa0875140 | MtrunA17_Chr8g0373671 | 27.461 | 193 | 129 | 6 | 359 | 540 | 142 | 334 | 1.25e-13 | 72.4 |
| Msa0875140 | MtrunA17_Chr5g0403501 | 28.272 | 191 | 128 | 6 | 359 | 540 | 166 | 356 | 8.11e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875140 | AT3G02350.1 | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Msa0875140 | AT3G25140.1 | 65.719 | 563 | 181 | 8 | 1 | 555 | 1 | 559 | 0.0 | 750 |
| Msa0875140 | AT3G61130.1 | 51.733 | 404 | 187 | 6 | 153 | 553 | 273 | 671 | 3.03e-151 | 449 |
| Msa0875140 | AT5G47780.1 | 50.390 | 385 | 187 | 2 | 170 | 554 | 235 | 615 | 1.40e-145 | 433 |
| Msa0875140 | AT4G38270.2 | 49.490 | 392 | 192 | 3 | 167 | 553 | 284 | 674 | 9.14e-142 | 425 |
| Msa0875140 | AT4G38270.1 | 49.490 | 392 | 192 | 3 | 167 | 553 | 288 | 678 | 1.05e-141 | 425 |
| Msa0875140 | AT1G18580.1 | 47.537 | 406 | 206 | 5 | 150 | 551 | 132 | 534 | 3.64e-133 | 399 |
| Msa0875140 | AT2G46480.3 | 46.552 | 406 | 214 | 3 | 148 | 551 | 132 | 536 | 9.54e-130 | 390 |
| Msa0875140 | AT2G46480.4 | 46.552 | 406 | 214 | 3 | 148 | 551 | 145 | 549 | 2.19e-129 | 389 |
| Msa0875140 | AT2G20810.1 | 42.917 | 480 | 249 | 8 | 80 | 553 | 75 | 535 | 1.01e-127 | 384 |
| Msa0875140 | AT2G46480.2 | 43.350 | 406 | 202 | 4 | 148 | 551 | 132 | 511 | 8.72e-115 | 350 |
| Msa0875140 | AT2G46480.1 | 43.350 | 406 | 202 | 4 | 148 | 551 | 145 | 524 | 1.82e-114 | 350 |
| Msa0875140 | AT5G54690.1 | 37.529 | 429 | 243 | 9 | 148 | 553 | 106 | 532 | 1.10e-102 | 320 |
| Msa0875140 | AT3G01040.2 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 1.30e-97 | 306 |
| Msa0875140 | AT3G01040.3 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 1.30e-97 | 306 |
| Msa0875140 | AT5G15470.1 | 39.344 | 427 | 234 | 8 | 149 | 552 | 105 | 529 | 1.00e-96 | 304 |
| Msa0875140 | AT1G06780.1 | 39.633 | 381 | 200 | 7 | 177 | 553 | 233 | 587 | 4.28e-89 | 286 |
| Msa0875140 | AT1G06780.2 | 39.633 | 381 | 200 | 7 | 177 | 553 | 246 | 600 | 8.04e-89 | 286 |
| Msa0875140 | AT2G30575.1 | 36.486 | 444 | 249 | 9 | 115 | 553 | 193 | 608 | 1.05e-87 | 283 |
| Msa0875140 | AT3G01040.1 | 36.735 | 441 | 227 | 12 | 137 | 552 | 83 | 496 | 3.55e-83 | 268 |
| Msa0875140 | AT3G58790.2 | 36.802 | 394 | 223 | 10 | 179 | 551 | 16 | 404 | 8.72e-80 | 256 |
| Msa0875140 | AT3G58790.1 | 34.676 | 447 | 252 | 12 | 139 | 551 | 96 | 536 | 3.41e-79 | 259 |
| Msa0875140 | AT2G38650.2 | 34.278 | 353 | 208 | 7 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0875140 | AT2G38650.1 | 34.278 | 353 | 208 | 7 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0875140 | AT2G38650.3 | 34.100 | 261 | 149 | 7 | 202 | 461 | 286 | 524 | 1.28e-31 | 129 |
| Msa0875140 | AT3G06260.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 150 | 339 | 1.42e-20 | 94.0 |
| Msa0875140 | AT4G02130.3 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0875140 | AT4G02130.1 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0875140 | AT4G02130.2 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.73e-19 | 90.5 |
| Msa0875140 | AT3G28340.1 | 31.638 | 177 | 114 | 5 | 357 | 526 | 153 | 329 | 5.14e-19 | 89.4 |
| Msa0875140 | AT3G62660.1 | 29.474 | 190 | 126 | 5 | 359 | 540 | 164 | 353 | 1.44e-18 | 88.2 |
| Msa0875140 | AT1G70090.1 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.32e-18 | 87.4 |
| Msa0875140 | AT1G70090.2 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.32e-18 | 87.4 |
| Msa0875140 | AT1G02720.1 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 7.12e-18 | 85.9 |
| Msa0875140 | AT1G02720.2 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 7.12e-18 | 85.9 |
| Msa0875140 | AT1G24170.1 | 25.000 | 312 | 193 | 11 | 240 | 540 | 81 | 362 | 2.25e-16 | 81.6 |
| Msa0875140 | AT1G19300.1 | 29.480 | 173 | 116 | 5 | 359 | 525 | 150 | 322 | 1.64e-15 | 78.6 |
| Msa0875140 | AT1G13250.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 144 | 333 | 6.36e-14 | 73.6 |
| Msa0875140 | AT3G50760.1 | 25.698 | 179 | 124 | 5 | 357 | 526 | 134 | 312 | 8.88e-11 | 63.9 |
Find 126 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAGATATTACGCAATTT+AGG | 0.100856 | 6_1:-11321152 | None:intergenic |
| CATATGATATTGTTTGTTTC+TGG | 0.123547 | 6_1:+11322769 | Msa0875140:three_prime_UTR |
| ATTGCGTAATATCTTACTTT+TGG | 0.234871 | 6_1:+11321157 | Msa0875140:CDS |
| TGACTTCGTTGTTGAGTAAA+AGG | 0.252347 | 6_1:-11322115 | None:intergenic |
| ATCCAACATCGACAGGTATT+TGG | 0.269061 | 6_1:-11321099 | None:intergenic |
| AAAGCATGTGCTTGGACTTA+TGG | 0.269972 | 6_1:+11321338 | Msa0875140:CDS |
| TTCTCAATACTGTAAGAATA+TGG | 0.275254 | 6_1:-11322452 | None:intergenic |
| TTGAAGGTCTCCTTGATTAA+AGG | 0.276921 | 6_1:-11321311 | None:intergenic |
| CAAACTCTTGGGAACTGATT+TGG | 0.285099 | 6_1:-11320652 | None:intergenic |
| GTAAGATATTACGCAATTTA+GGG | 0.288691 | 6_1:-11321151 | None:intergenic |
| TTCGTGGATTCTTCTCTTAC+CGG | 0.307603 | 6_1:+11318839 | Msa0875140:CDS |
| TTTGTCCAGATGTGCAATTT+TGG | 0.312058 | 6_1:+11322309 | Msa0875140:CDS |
| TAAGTCCAAGCACATGCTTT+TGG | 0.336542 | 6_1:-11321335 | None:intergenic |
| GTTGAAGATGTTTGATGAAT+TGG | 0.345952 | 6_1:+11320365 | Msa0875140:CDS |
| GCACAGAACATTACCATTAC+TGG | 0.352779 | 6_1:+11321402 | Msa0875140:CDS |
| AGAACGAAGACCAGACAATA+TGG | 0.369537 | 6_1:+11322061 | Msa0875140:intron |
| AGATTATGACTGTAAGAATA+TGG | 0.385058 | 6_1:-11322403 | None:intergenic |
| CTTTCATCTCTATACTTCTC+CGG | 0.388330 | 6_1:-11320717 | None:intergenic |
| AGCTTAAGCTTGATATTTCT+AGG | 0.388924 | 6_1:+11320340 | Msa0875140:CDS |
| AGACCAGACAATATGGAAAT+CGG | 0.388975 | 6_1:+11322068 | Msa0875140:CDS |
| TCCCAAGAGTTTGCATTGCT+TGG | 0.390754 | 6_1:+11320662 | Msa0875140:CDS |
| ATCTCATCCATGCTAATACT+TGG | 0.391177 | 6_1:-11322177 | None:intergenic |
| TAAATATGTCGACAGCGATA+TGG | 0.391317 | 6_1:+11322284 | Msa0875140:CDS |
| ATAAGCCAAAATTGCACATC+TGG | 0.401451 | 6_1:-11322314 | None:intergenic |
| CAGAAAGAGTTGCAATGAAA+AGG | 0.416554 | 6_1:-11318888 | None:intergenic |
| AGGTTTGTGGAAGATTGATT+TGG | 0.416602 | 6_1:+11321211 | Msa0875140:CDS |
| AGCCAAGCAATGCAAACTCT+TGG | 0.417299 | 6_1:-11320664 | None:intergenic |
| GACAAATCATGGCATGTACT+TGG | 0.421269 | 6_1:+11322141 | Msa0875140:CDS |
| GGTGCCGTTGAAATCTGTTT+CGG | 0.422824 | 6_1:+11321248 | Msa0875140:CDS |
| TTTCTCTCATCCTTTAATCA+AGG | 0.433708 | 6_1:+11321301 | Msa0875140:CDS |
| CAAGATCCAATGGCGGTGTC+TGG | 0.433805 | 6_1:+11318790 | Msa0875140:exon |
| ATCATGGCATGTACTTGGAT+TGG | 0.439602 | 6_1:+11322146 | Msa0875140:CDS |
| TGAAAGTTTGGTTTAAAATG+AGG | 0.442153 | 6_1:+11320901 | Msa0875140:CDS |
| CGCAATTTAGGGTACATCTC+TGG | 0.448080 | 6_1:-11321140 | None:intergenic |
| GACCAGACAATATGGAAATC+GGG | 0.448864 | 6_1:+11322069 | Msa0875140:CDS |
| TTACAGGATCTTCCTACTAC+TGG | 0.449291 | 6_1:+11320189 | Msa0875140:intron |
| CATTGAAATCTGACCCACTT+AGG | 0.457831 | 6_1:+11320241 | Msa0875140:CDS |
| TCATGGCATGTACTTGGATT+GGG | 0.458659 | 6_1:+11322147 | Msa0875140:CDS |
| TCCCCGATTTCCATATTGTC+TGG | 0.461507 | 6_1:-11322071 | None:intergenic |
| CATTGAGAATCAAGGTGATA+AGG | 0.462472 | 6_1:+11321040 | Msa0875140:CDS |
| CTCAACACATCCTCATCAAT+CGG | 0.464839 | 6_1:-11320453 | None:intergenic |
| CGAAGTCACTGGACAAATCA+TGG | 0.468896 | 6_1:+11322130 | Msa0875140:CDS |
| ATGTTGCTGCAATGAAAGTT+TGG | 0.471183 | 6_1:+11320889 | Msa0875140:CDS |
| GTTTGCATTGCTTGGCTATG+AGG | 0.472066 | 6_1:+11320670 | Msa0875140:CDS |
| TTACCTTGTTCTGCCAGTAA+TGG | 0.482948 | 6_1:-11321415 | None:intergenic |
| TTTAAAATGAGGCCGGTTGA+AGG | 0.483172 | 6_1:+11320912 | Msa0875140:CDS |
| GCCAAGCAATGCAAACTCTT+GGG | 0.486260 | 6_1:-11320663 | None:intergenic |
| TGTTAACTGTTGCGTGCCGC+AGG | 0.489518 | 6_1:+11322482 | Msa0875140:three_prime_UTR |
| TTGCTTGGCTATGAGGCTGA+TGG | 0.491342 | 6_1:+11320677 | Msa0875140:CDS |
| TATTTGATCTTGATGCTTGG+AGG | 0.492476 | 6_1:+11321369 | Msa0875140:CDS |
| CTTAAATTCATCATATGTAC+CGG | 0.497877 | 6_1:+11320977 | Msa0875140:CDS |
| TCAATCCAAAAGCATGTGCT+TGG | 0.499392 | 6_1:+11321330 | Msa0875140:CDS |
| ATATATTTGATCTTGATGCT+TGG | 0.500145 | 6_1:+11321366 | Msa0875140:CDS |
| GCAGTTTGAGAAAGAGATCA+AGG | 0.503614 | 6_1:+11320476 | Msa0875140:CDS |
| TTACTCAACAACGAAGTCAC+TGG | 0.504531 | 6_1:+11322119 | Msa0875140:CDS |
| AGTATAGAGATGAAAGTCCT+AGG | 0.505593 | 6_1:+11320724 | Msa0875140:CDS |
| GATTTGGATGGGAAGGTGAA+TGG | 0.507230 | 6_1:+11321227 | Msa0875140:CDS |
| CCAATGGCGGTGTCTGGTAG+AGG | 0.508353 | 6_1:+11318796 | Msa0875140:exon |
| TTTCATCTCTATACTTCTCC+GGG | 0.514817 | 6_1:-11320716 | None:intergenic |
| AAAAGGACTTGACAGGTTTG+TGG | 0.514967 | 6_1:+11321198 | Msa0875140:CDS |
| CCTCTACCAGACACCGCCAT+TGG | 0.515687 | 6_1:-11318796 | None:intergenic |
| AAATCCACTCTTGTCCTAAG+TGG | 0.522559 | 6_1:-11320255 | None:intergenic |
| TGCTTGGCTATGAGGCTGAT+GGG | 0.525319 | 6_1:+11320678 | Msa0875140:CDS |
| AAACAAACAATATCATATGT+AGG | 0.536356 | 6_1:-11322765 | None:intergenic |
| TGATGATGTTGTGGTGCAAA+AGG | 0.536392 | 6_1:+11321181 | Msa0875140:CDS |
| TGTGGAAGATTGATTTGGAT+GGG | 0.537910 | 6_1:+11321216 | Msa0875140:CDS |
| TGCCAAATACCTGTCGATGT+TGG | 0.538893 | 6_1:+11321097 | Msa0875140:CDS |
| GAAGATAATCCAACATCGAC+AGG | 0.540192 | 6_1:-11321106 | None:intergenic |
| GCTGCTGTTATTCATTACAA+TGG | 0.540639 | 6_1:+11322207 | Msa0875140:CDS |
| GCGTCATTGTTTGAGTCGGA+TGG | 0.540800 | 6_1:+11320429 | Msa0875140:CDS |
| TTGTGGAAGATTGATTTGGA+TGG | 0.543073 | 6_1:+11321215 | Msa0875140:CDS |
| TGTTAATGAGTCACTTGCTA+AGG | 0.546277 | 6_1:+11320593 | Msa0875140:CDS |
| GACAATCGTCAGATGCTACA+AGG | 0.548862 | 6_1:+11322567 | Msa0875140:three_prime_UTR |
| CAGCATTACATTGAGAATCA+AGG | 0.549426 | 6_1:+11321032 | Msa0875140:CDS |
| TAGAGATGAAAGTCCTAGGC+CGG | 0.550345 | 6_1:+11320728 | Msa0875140:CDS |
| GGATCTTCAAACTCCGGCCT+AGG | 0.550398 | 6_1:-11320741 | None:intergenic |
| ACATAGCAGAAATAAAGATC+CGG | 0.551626 | 6_1:-11318858 | None:intergenic |
| TCACGTACTGCGAATATCGA+TGG | 0.551728 | 6_1:-11321277 | None:intergenic |
| ACAATGGAAACATGAAACCT+TGG | 0.551889 | 6_1:+11322223 | Msa0875140:CDS |
| GGGTGAGAAGATTTCGAACC+CGG | 0.565653 | 6_1:+11320698 | Msa0875140:CDS |
| TTCAAAGCAATATCTAGCCA+AGG | 0.567247 | 6_1:-11322240 | None:intergenic |
| AAATCGGGGACGCTTCCACC+TGG | 0.569876 | 6_1:+11322084 | Msa0875140:CDS |
| ATGCTTATGCTGCATATGCT+AGG | 0.582801 | 6_1:+11320316 | Msa0875140:CDS |
| CATCATATGTACCGGTGTTG+AGG | 0.585707 | 6_1:+11320985 | Msa0875140:CDS |
| ACATATGCATTACCAGTAGT+AGG | 0.586130 | 6_1:-11320201 | None:intergenic |
| TCTGGTAGAGGAAGCAGAGG+TGG | 0.587788 | 6_1:+11318808 | Msa0875140:CDS |
| AGTTTGGTTTAAAATGAGGC+CGG | 0.588130 | 6_1:+11320905 | Msa0875140:CDS |
| TAAAGAATGCAGTTGAGCCA+TGG | 0.589043 | 6_1:+11320832 | Msa0875140:CDS |
| AAGATGTTTGATGAATTGGC+TGG | 0.598245 | 6_1:+11320369 | Msa0875140:CDS |
| AACAATGACGCTCTGTACGT+TGG | 0.601791 | 6_1:-11320417 | None:intergenic |
| CAGAGCGTCATTGTTTGAGT+CGG | 0.602189 | 6_1:+11320425 | Msa0875140:CDS |
| CGTGATAGCTGTGTCGGTGG+TGG | 0.602400 | 6_1:+11320797 | Msa0875140:CDS |
| ATATAATCCAAGTATTAGCA+TGG | 0.602840 | 6_1:+11322170 | Msa0875140:CDS |
| AATCCACTCTTGTCCTAAGT+GGG | 0.603135 | 6_1:-11320254 | None:intergenic |
| AGAGGTGGATCTACTCTTCG+TGG | 0.604744 | 6_1:+11318823 | Msa0875140:CDS |
| CAAGAGAGTACAAGATCCAA+TGG | 0.610362 | 6_1:+11318780 | Msa0875140:exon |
| GCCTCAACTTGCCTCAACAC+CGG | 0.612683 | 6_1:-11320996 | None:intergenic |
| GTGGTGCAAAAGGACTTGAC+AGG | 0.614307 | 6_1:+11321191 | Msa0875140:CDS |
| GTCAACAACGAATTCTCAGA+TGG | 0.617080 | 6_1:-11322547 | None:intergenic |
| AGACAACGTGATAGCTGTGT+CGG | 0.620965 | 6_1:+11320791 | Msa0875140:CDS |
| ACCGGTGTTGAGGCAAGTTG+AGG | 0.622859 | 6_1:+11320995 | Msa0875140:CDS |
| AAAATGAGGCCGGTTGAAGG+AGG | 0.624677 | 6_1:+11320915 | Msa0875140:CDS |
| GAAGATTGATTTGGATGGGA+AGG | 0.627613 | 6_1:+11321220 | Msa0875140:CDS |
| ACCAGACAATATGGAAATCG+GGG | 0.633868 | 6_1:+11322070 | Msa0875140:CDS |
| ATTTGATAAGTAAGTGTGTG+TGG | 0.634073 | 6_1:-11318573 | None:intergenic |
| AGGATAGAGTGAAGATTGCG+AGG | 0.634682 | 6_1:+11320496 | Msa0875140:CDS |
| GAGTAAAAGGTAATCAAACC+AGG | 0.642054 | 6_1:-11322102 | None:intergenic |
| AAACTCGGATCTTCAAACTC+CGG | 0.646387 | 6_1:-11320747 | None:intergenic |
| TGACCCACTTAGGACAAGAG+TGG | 0.652138 | 6_1:+11320251 | Msa0875140:CDS |
| GTCGGTGGTGGTTAGATCTG+TGG | 0.652481 | 6_1:+11320809 | Msa0875140:CDS |
| AGAACCGAAACAGATTTCAA+CGG | 0.653696 | 6_1:-11321252 | None:intergenic |
| TTTGATAAGTAAGTGTGTGT+GGG | 0.657212 | 6_1:-11318572 | None:intergenic |
| AAGAATATGGTAAGCCACAG+TGG | 0.657602 | 6_1:-11322390 | None:intergenic |
| AAGAATATGGTAAGCCACAG+TGG | 0.657602 | 6_1:-11322439 | None:intergenic |
| TTACCATTACTGGCAGAACA+AGG | 0.659270 | 6_1:+11321412 | Msa0875140:CDS |
| GTGTCTGGTAGAGGAAGCAG+AGG | 0.672865 | 6_1:+11318805 | Msa0875140:CDS |
| TGCGAGGATGATGATTGTTG+AGG | 0.674761 | 6_1:+11320512 | Msa0875140:CDS |
| ATTGCATAATGATACAAACT+CGG | 0.677991 | 6_1:-11320762 | None:intergenic |
| CAACGTGATAGCTGTGTCGG+TGG | 0.680418 | 6_1:+11320794 | Msa0875140:CDS |
| GACAATGCAGAACTTTCCTG+CGG | 0.695048 | 6_1:-11322498 | None:intergenic |
| GTCGGATGGTCCGATTGATG+AGG | 0.696242 | 6_1:+11320443 | Msa0875140:CDS |
| TAAAAGGTAATCAAACCAGG+TGG | 0.699075 | 6_1:-11322099 | None:intergenic |
| CGATTGATGAGGATGTGTTG+AGG | 0.706532 | 6_1:+11320454 | Msa0875140:CDS |
| GAGAGTACAAGATCCAATGG+CGG | 0.738861 | 6_1:+11318783 | Msa0875140:exon |
| TTGAGATGAAGTGTCCACTG+TGG | 0.771477 | 6_1:+11322376 | Msa0875140:three_prime_UTR |
| TTGAGATGAAGTGTCCACTG+TGG | 0.771477 | 6_1:+11322425 | Msa0875140:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGTTAAATCTAAAATAA+GGG | - | chr6_1:11319041-11319060 | None:intergenic | 10.0% |
| !!! | TTAAAGTTAAATCTAAAATA+AGG | - | chr6_1:11319042-11319061 | None:intergenic | 10.0% |
| !!! | TAATTAATGAATTAATCTTT+TGG | + | chr6_1:11319103-11319122 | Msa0875140:intron | 10.0% |
| !!! | TAATTTTTATTTGCTAAATT+TGG | + | chr6_1:11322593-11322612 | Msa0875140:three_prime_UTR | 10.0% |
| !!! | TTGTAAAGTTTTGATTTTTA+TGG | + | chr6_1:11318981-11319000 | Msa0875140:intron | 15.0% |
| !! | CAATTTCCAAAATAAAAAAT+GGG | - | chr6_1:11319010-11319029 | None:intergenic | 15.0% |
| !!! | AAAGTTAAATCTAAAATAAG+GGG | - | chr6_1:11319040-11319059 | None:intergenic | 15.0% |
| !! | AATTCATGAAATTAACATAT+GGG | - | chr6_1:11319071-11319090 | None:intergenic | 15.0% |
| !!! | TTGAAACCTATTATAAATTT+TGG | + | chr6_1:11319317-11319336 | Msa0875140:intron | 15.0% |
| !! | CAATATCCAAAATTTATAAT+AGG | - | chr6_1:11319326-11319345 | None:intergenic | 15.0% |
| !!! | CTATTATAAATTTTGGATAT+TGG | + | chr6_1:11319324-11319343 | Msa0875140:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_1:11319356-11319375 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_1:11319357-11319376 | None:intergenic | 15.0% |
| !!! | ACAATAACTTTATAAACTTT+TGG | + | chr6_1:11319659-11319678 | Msa0875140:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_1:11319356-11319375 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_1:11319357-11319376 | None:intergenic | 15.0% |
| !! | AATTCATCAAATTAACATAT+GGG | - | chr6_1:11319723-11319742 | None:intergenic | 15.0% |
| !!! | TCATTTTCTGAAATTATTAT+CGG | - | chr6_1:11319808-11319827 | None:intergenic | 15.0% |
| !! | TTATATATCATATATGACTA+TGG | + | chr6_1:11321569-11321588 | Msa0875140:intron | 15.0% |
| !! | TATATATCATATATGACTAT+GGG | + | chr6_1:11321570-11321589 | Msa0875140:intron | 15.0% |
| !!! | TTTTTTTGGCAATTTTATAT+AGG | - | chr6_1:11321652-11321671 | None:intergenic | 15.0% |
| !! | TATATAAAATTGCCAAAAAA+AGG | + | chr6_1:11321651-11321670 | Msa0875140:intron | 15.0% |
| !!! | ATTTTTTTCATTTTCTAGTT+TGG | + | chr6_1:11322643-11322662 | Msa0875140:three_prime_UTR | 15.0% |
| !! | CCAATTTCCAAAATAAAAAA+TGG | - | chr6_1:11319011-11319030 | None:intergenic | 20.0% |
| !!! | CCATTTTTTATTTTGGAAAT+TGG | + | chr6_1:11319008-11319027 | Msa0875140:intron | 20.0% |
| !! | CAATTCATGAAATTAACATA+TGG | - | chr6_1:11319072-11319091 | None:intergenic | 20.0% |
| !! | CAAAATTTGATGAATTGAAT+TGG | - | chr6_1:11319267-11319286 | None:intergenic | 20.0% |
| !! | CAATTCATCAAATTAACATA+TGG | - | chr6_1:11319724-11319743 | None:intergenic | 20.0% |
| !! | TTCATTTCTCAAATTATTAC+CGG | - | chr6_1:11320047-11320066 | None:intergenic | 20.0% |
| !!! | TGTCACTTGTTTTTAATTAA+TGG | - | chr6_1:11321533-11321552 | None:intergenic | 20.0% |
| !!! | TTGAATCTTGAATTATTTTG+AGG | - | chr6_1:11321596-11321615 | None:intergenic | 20.0% |
| !! | ATTAAATGACAAAAGAAAAG+TGG | + | chr6_1:11321623-11321642 | Msa0875140:intron | 20.0% |
| !! | TCCTTTGTACAATTATTAAA+TGG | + | chr6_1:11321992-11322011 | Msa0875140:intron | 20.0% |
| !! | CCTTTGTACAATTATTAAAT+GGG | + | chr6_1:11321993-11322012 | Msa0875140:intron | 20.0% |
| !! | TGAATCAATATAAAAATCTC+TGG | + | chr6_1:11322259-11322278 | Msa0875140:CDS | 20.0% |
| !! | AAACAAACAATATCATATGT+AGG | - | chr6_1:11322768-11322787 | None:intergenic | 20.0% |
| !!! | TGGAAACCCATTTTTTATTT+TGG | + | chr6_1:11319001-11319020 | Msa0875140:intron | 25.0% |
| ! | TTGAATGTAATCATATGTGT+AGG | + | chr6_1:11319233-11319252 | Msa0875140:intron | 25.0% |
| ! | CAATTCATGAAACTAACATA+TGG | - | chr6_1:11319388-11319407 | None:intergenic | 25.0% |
| ! | TCATTTCTCAAATTATTACC+GGG | - | chr6_1:11320046-11320065 | None:intergenic | 25.0% |
| ! | TCACATATTAGTGAATTAGT+TGG | + | chr6_1:11320089-11320108 | Msa0875140:intron | 25.0% |
| ! | TATAGAGGTTGTAACAAATT+AGG | + | chr6_1:11320153-11320172 | Msa0875140:intron | 25.0% |
| !!! | AGGTTTTTGTTTTTGTTTAC+AGG | + | chr6_1:11320173-11320192 | Msa0875140:intron | 25.0% |
| ! | ATTGCATAATGATACAAACT+CGG | - | chr6_1:11320765-11320784 | None:intergenic | 25.0% |
| !! | TGAAAGTTTGGTTTAAAATG+AGG | + | chr6_1:11320901-11320920 | Msa0875140:CDS | 25.0% |
| !!! | TGCATTTTTAGAGATAAAGT+CGG | + | chr6_1:11320938-11320957 | Msa0875140:CDS | 25.0% |
| ! | CTTAAATTCATCATATGTAC+CGG | + | chr6_1:11320977-11320996 | Msa0875140:CDS | 25.0% |
| ! | GTAAGATATTACGCAATTTA+GGG | - | chr6_1:11321154-11321173 | None:intergenic | 25.0% |
| ! | AGTAAGATATTACGCAATTT+AGG | - | chr6_1:11321155-11321174 | None:intergenic | 25.0% |
| !! | ATTGCGTAATATCTTACTTT+TGG | + | chr6_1:11321157-11321176 | Msa0875140:CDS | 25.0% |
| ! | ATATATTTGATCTTGATGCT+TGG | + | chr6_1:11321366-11321385 | Msa0875140:CDS | 25.0% |
| ! | TGAGTTTCATCATAATAAGT+CGG | + | chr6_1:11321838-11321857 | Msa0875140:intron | 25.0% |
| ! | GTATCAAATAGAGATACAAT+TGG | + | chr6_1:11321916-11321935 | Msa0875140:intron | 25.0% |
| ! | CCCATTTAATAATTGTACAA+AGG | - | chr6_1:11321996-11322015 | None:intergenic | 25.0% |
| ! | ATATAATCCAAGTATTAGCA+TGG | + | chr6_1:11322170-11322189 | Msa0875140:CDS | 25.0% |
| ! | AGATTATGACTGTAAGAATA+TGG | - | chr6_1:11322406-11322425 | None:intergenic | 25.0% |
| ! | TTCTCAATACTGTAAGAATA+TGG | - | chr6_1:11322455-11322474 | None:intergenic | 25.0% |
| ! | CATATGATATTGTTTGTTTC+TGG | + | chr6_1:11322769-11322788 | Msa0875140:three_prime_UTR | 25.0% |
| TTTGATAAGTAAGTGTGTGT+GGG | - | chr6_1:11318575-11318594 | None:intergenic | 30.0% | |
| ATTTGATAAGTAAGTGTGTG+TGG | - | chr6_1:11318576-11318595 | None:intergenic | 30.0% | |
| !!! | GAACAAAACAGTTTTGTTTC+TGG | + | chr6_1:11318738-11318757 | Msa0875140:five_prime_UTR | 30.0% |
| ACATAGCAGAAATAAAGATC+CGG | - | chr6_1:11318861-11318880 | None:intergenic | 30.0% | |
| ! | ATTTTCTGTAGAAGGATTTG+TGG | - | chr6_1:11318923-11318942 | None:intergenic | 30.0% |
| ACAAAAACACACAAAAACAG+AGG | - | chr6_1:11318962-11318981 | None:intergenic | 30.0% | |
| TGTAATCATATGTGTAGGTT+CGG | + | chr6_1:11319238-11319257 | Msa0875140:intron | 30.0% | |
| TGAATGATTTGAGCATAATC+AGG | + | chr6_1:11319493-11319512 | Msa0875140:intron | 30.0% | |
| GATGAATTGAATGAATCTTG+TGG | + | chr6_1:11319735-11319754 | Msa0875140:intron | 30.0% | |
| ATTTACTAACACATAGATCC+CGG | + | chr6_1:11320025-11320044 | Msa0875140:intron | 30.0% | |
| ! | ATATGTGCACAGAACATTTT+TGG | + | chr6_1:11320218-11320237 | Msa0875140:CDS | 30.0% |
| AGCTTAAGCTTGATATTTCT+AGG | + | chr6_1:11320340-11320359 | Msa0875140:CDS | 30.0% | |
| GTTGAAGATGTTTGATGAAT+TGG | + | chr6_1:11320365-11320384 | Msa0875140:CDS | 30.0% | |
| ! | TGAATTGGCTGGTAATTTTT+CGG | + | chr6_1:11320380-11320399 | Msa0875140:CDS | 30.0% |
| ! | TTTTTCATGTCGTTACAAAC+AGG | + | chr6_1:11320862-11320881 | Msa0875140:CDS | 30.0% |
| TTTCTCTCATCCTTTAATCA+AGG | + | chr6_1:11321301-11321320 | Msa0875140:CDS | 30.0% | |
| ACAAGATAATAACTACAAGC+AGG | - | chr6_1:11321447-11321466 | None:intergenic | 30.0% | |
| AGCAAAGAGTTACAAGTTAT+TGG | - | chr6_1:11321500-11321519 | None:intergenic | 30.0% | |
| !!! | TGTAGTCAAACACCTTTTTT+TGG | - | chr6_1:11321666-11321685 | None:intergenic | 30.0% |
| GAGTTTCATCATAATAAGTC+GGG | + | chr6_1:11321839-11321858 | Msa0875140:intron | 30.0% | |
| CTGTAGAGATTCATATTGAT+TGG | + | chr6_1:11321883-11321902 | Msa0875140:intron | 30.0% | |
| !! | TTAAATGGGTTACTGTAAAG+TGG | + | chr6_1:11322007-11322026 | Msa0875140:intron | 30.0% |
| CAGAAAGAGTTGCAATGAAA+AGG | - | chr6_1:11318891-11318910 | None:intergenic | 35.0% | |
| ! | GAGTCATCATTTTCTGTAGA+AGG | - | chr6_1:11318931-11318950 | None:intergenic | 35.0% |
| ATGATTTGAGCATAATCAGG+TGG | + | chr6_1:11319496-11319515 | Msa0875140:intron | 35.0% | |
| TGATTTGAGCATAATCAGGT+GGG | + | chr6_1:11319497-11319516 | Msa0875140:intron | 35.0% | |
| GAATTGAATGAATCTTGTGG+TGG | + | chr6_1:11319738-11319757 | Msa0875140:intron | 35.0% | |
| AACCTAATCTGTTACAAGCT+CGG | - | chr6_1:11319909-11319928 | None:intergenic | 35.0% | |
| TTACATCATCTTCCTACTAC+TGG | + | chr6_1:11319934-11319953 | Msa0875140:intron | 35.0% | |
| ACATATGCATTACCAGTAGT+AGG | - | chr6_1:11320204-11320223 | None:intergenic | 35.0% | |
| AAGATGTTTGATGAATTGGC+TGG | + | chr6_1:11320369-11320388 | Msa0875140:CDS | 35.0% | |
| ! | TGTTAATGAGTCACTTGCTA+AGG | + | chr6_1:11320593-11320612 | Msa0875140:CDS | 35.0% |
| CTTGCTAAGGCAAAAAAGAA+CGG | + | chr6_1:11320606-11320625 | Msa0875140:CDS | 35.0% | |
| TTGCTAAGGCAAAAAAGAAC+GGG | + | chr6_1:11320607-11320626 | Msa0875140:CDS | 35.0% | |
| TTTCATCTCTATACTTCTCC+GGG | - | chr6_1:11320719-11320738 | None:intergenic | 35.0% | |
| CTTTCATCTCTATACTTCTC+CGG | - | chr6_1:11320720-11320739 | None:intergenic | 35.0% | |
| AGTATAGAGATGAAAGTCCT+AGG | + | chr6_1:11320724-11320743 | Msa0875140:CDS | 35.0% | |
| ACATGAAAAACATGCTTCCA+TGG | - | chr6_1:11320852-11320871 | None:intergenic | 35.0% | |
| ATGTTGCTGCAATGAAAGTT+TGG | + | chr6_1:11320889-11320908 | Msa0875140:CDS | 35.0% | |
| ! | AGTTTGGTTTAAAATGAGGC+CGG | + | chr6_1:11320905-11320924 | Msa0875140:CDS | 35.0% |
| CAGCATTACATTGAGAATCA+AGG | + | chr6_1:11321032-11321051 | Msa0875140:CDS | 35.0% | |
| CATTGAGAATCAAGGTGATA+AGG | + | chr6_1:11321040-11321059 | Msa0875140:CDS | 35.0% | |
| !! | ACTTTTGGATGATGATGTTG+TGG | + | chr6_1:11321172-11321191 | Msa0875140:CDS | 35.0% |
| AGGTTTGTGGAAGATTGATT+TGG | + | chr6_1:11321211-11321230 | Msa0875140:CDS | 35.0% | |
| !! | TTGTGGAAGATTGATTTGGA+TGG | + | chr6_1:11321215-11321234 | Msa0875140:CDS | 35.0% |
| !! | TGTGGAAGATTGATTTGGAT+GGG | + | chr6_1:11321216-11321235 | Msa0875140:CDS | 35.0% |
| AGAACCGAAACAGATTTCAA+CGG | - | chr6_1:11321255-11321274 | None:intergenic | 35.0% | |
| TTGAAGGTCTCCTTGATTAA+AGG | - | chr6_1:11321314-11321333 | None:intergenic | 35.0% | |
| TATTTGATCTTGATGCTTGG+AGG | + | chr6_1:11321369-11321388 | Msa0875140:CDS | 35.0% | |
| GATCATTATTCACGAAACCA+TGG | - | chr6_1:11321965-11321984 | None:intergenic | 35.0% | |
| AGACCAGACAATATGGAAAT+CGG | + | chr6_1:11322068-11322087 | Msa0875140:CDS | 35.0% | |
| TAAAAGGTAATCAAACCAGG+TGG | - | chr6_1:11322102-11322121 | None:intergenic | 35.0% | |
| GAGTAAAAGGTAATCAAACC+AGG | - | chr6_1:11322105-11322124 | None:intergenic | 35.0% | |
| TGACTTCGTTGTTGAGTAAA+AGG | - | chr6_1:11322118-11322137 | None:intergenic | 35.0% | |
| ATCTCATCCATGCTAATACT+TGG | - | chr6_1:11322180-11322199 | None:intergenic | 35.0% | |
| GCTGCTGTTATTCATTACAA+TGG | + | chr6_1:11322207-11322226 | Msa0875140:CDS | 35.0% | |
| ACAATGGAAACATGAAACCT+TGG | + | chr6_1:11322223-11322242 | Msa0875140:CDS | 35.0% | |
| TTCAAAGCAATATCTAGCCA+AGG | - | chr6_1:11322243-11322262 | None:intergenic | 35.0% | |
| TAAATATGTCGACAGCGATA+TGG | + | chr6_1:11322284-11322303 | Msa0875140:CDS | 35.0% | |
| ! | TTTGTCCAGATGTGCAATTT+TGG | + | chr6_1:11322309-11322328 | Msa0875140:CDS | 35.0% |
| ATAAGCCAAAATTGCACATC+TGG | - | chr6_1:11322317-11322336 | None:intergenic | 35.0% | |
| ! | CAAGAGAGTACAAGATCCAA+TGG | + | chr6_1:11318780-11318799 | Msa0875140:exon | 40.0% |
| TTCGTGGATTCTTCTCTTAC+CGG | + | chr6_1:11318839-11318858 | Msa0875140:CDS | 40.0% | |
| TTGGTGTAACCTATGAAGCA+CGG | + | chr6_1:11319122-11319141 | Msa0875140:intron | 40.0% | |
| GAATGAGTGAACGAATCTTG+TGG | + | chr6_1:11319415-11319434 | Msa0875140:intron | 40.0% | |
| CCGTTTCAATGTCTTAGTGT+CGG | - | chr6_1:11319457-11319476 | None:intergenic | 40.0% | |
| CCGACACTAAGACATTGAAA+CGG | + | chr6_1:11319454-11319473 | Msa0875140:intron | 40.0% | |
| ! | ATCAGAGGGTGTAAGGAATT+AGG | + | chr6_1:11319554-11319573 | Msa0875140:intron | 40.0% |
| TGTCTGTGTTAGTGCTTCAT+AGG | - | chr6_1:11319766-11319785 | None:intergenic | 40.0% | |
| CAATATGCACTACCAGTAGT+AGG | - | chr6_1:11319949-11319968 | None:intergenic | 40.0% | |
| ! | CTACTACTGGTAGTGCATAT+TGG | + | chr6_1:11319947-11319966 | Msa0875140:intron | 40.0% |
| TTATCCGCACGCTTAGAAAA+AGG | + | chr6_1:11319998-11320017 | Msa0875140:intron | 40.0% | |
| ! | ATCACCTTTTTCTAAGCGTG+CGG | - | chr6_1:11320005-11320024 | None:intergenic | 40.0% |
| CTTGACACACCTTTGATTAG+AGG | + | chr6_1:11320121-11320140 | Msa0875140:intron | 40.0% | |
| ! | ACACCTTTGATTAGAGGTGT+CGG | + | chr6_1:11320127-11320146 | Msa0875140:intron | 40.0% |
| TTACAGGATCTTCCTACTAC+TGG | + | chr6_1:11320189-11320208 | Msa0875140:intron | 40.0% | |
| CATTGAAATCTGACCCACTT+AGG | + | chr6_1:11320241-11320260 | Msa0875140:CDS | 40.0% | |
| AATCCACTCTTGTCCTAAGT+GGG | - | chr6_1:11320257-11320276 | None:intergenic | 40.0% | |
| AAATCCACTCTTGTCCTAAG+TGG | - | chr6_1:11320258-11320277 | None:intergenic | 40.0% | |
| ATGCTTATGCTGCATATGCT+AGG | + | chr6_1:11320316-11320335 | Msa0875140:CDS | 40.0% | |
| CTCAACACATCCTCATCAAT+CGG | - | chr6_1:11320456-11320475 | None:intergenic | 40.0% | |
| GCAGTTTGAGAAAGAGATCA+AGG | + | chr6_1:11320476-11320495 | Msa0875140:CDS | 40.0% | |
| TGCTAAGGCAAAAAAGAACG+GGG | + | chr6_1:11320608-11320627 | Msa0875140:CDS | 40.0% | |
| CAAACTCTTGGGAACTGATT+TGG | - | chr6_1:11320655-11320674 | None:intergenic | 40.0% | |
| AAACTCGGATCTTCAAACTC+CGG | - | chr6_1:11320750-11320769 | None:intergenic | 40.0% | |
| TAAAGAATGCAGTTGAGCCA+TGG | + | chr6_1:11320832-11320851 | Msa0875140:CDS | 40.0% | |
| ! | TTTAAAATGAGGCCGGTTGA+AGG | + | chr6_1:11320912-11320931 | Msa0875140:CDS | 40.0% |
| AAAAATGCACCTCCTTCAAC+CGG | - | chr6_1:11320927-11320946 | None:intergenic | 40.0% | |
| ATCCAACATCGACAGGTATT+TGG | - | chr6_1:11321102-11321121 | None:intergenic | 40.0% | |
| GAAGATAATCCAACATCGAC+AGG | - | chr6_1:11321109-11321128 | None:intergenic | 40.0% | |
| ! | TGATGATGTTGTGGTGCAAA+AGG | + | chr6_1:11321181-11321200 | Msa0875140:CDS | 40.0% |
| AAAAGGACTTGACAGGTTTG+TGG | + | chr6_1:11321198-11321217 | Msa0875140:CDS | 40.0% | |
| !! | GAAGATTGATTTGGATGGGA+AGG | + | chr6_1:11321220-11321239 | Msa0875140:CDS | 40.0% |
| ! | AGCACATGCTTTTGGATTGA+AGG | - | chr6_1:11321330-11321349 | None:intergenic | 40.0% |
| ! | TCAATCCAAAAGCATGTGCT+TGG | + | chr6_1:11321330-11321349 | Msa0875140:CDS | 40.0% |
| ! | TAAGTCCAAGCACATGCTTT+TGG | - | chr6_1:11321338-11321357 | None:intergenic | 40.0% |
| AAAGCATGTGCTTGGACTTA+TGG | + | chr6_1:11321338-11321357 | Msa0875140:CDS | 40.0% | |
| GCACAGAACATTACCATTAC+TGG | + | chr6_1:11321402-11321421 | Msa0875140:CDS | 40.0% | |
| TTACCATTACTGGCAGAACA+AGG | + | chr6_1:11321412-11321431 | Msa0875140:CDS | 40.0% | |
| TTACCTTGTTCTGCCAGTAA+TGG | - | chr6_1:11321418-11321437 | None:intergenic | 40.0% | |
| TTGTAAGATACCGAAGACCA+TGG | + | chr6_1:11321945-11321964 | Msa0875140:intron | 40.0% | |
| ATTCACGAAACCATGGTCTT+CGG | - | chr6_1:11321958-11321977 | None:intergenic | 40.0% | |
| AGAACGAAGACCAGACAATA+TGG | + | chr6_1:11322061-11322080 | Msa0875140:intron | 40.0% | |
| GACCAGACAATATGGAAATC+GGG | + | chr6_1:11322069-11322088 | Msa0875140:CDS | 40.0% | |
| ACCAGACAATATGGAAATCG+GGG | + | chr6_1:11322070-11322089 | Msa0875140:CDS | 40.0% | |
| TTACTCAACAACGAAGTCAC+TGG | + | chr6_1:11322119-11322138 | Msa0875140:CDS | 40.0% | |
| GACAAATCATGGCATGTACT+TGG | + | chr6_1:11322141-11322160 | Msa0875140:CDS | 40.0% | |
| ATCATGGCATGTACTTGGAT+TGG | + | chr6_1:11322146-11322165 | Msa0875140:CDS | 40.0% | |
| TCATGGCATGTACTTGGATT+GGG | + | chr6_1:11322147-11322166 | Msa0875140:CDS | 40.0% | |
| AAGAATATGGTAAGCCACAG+TGG | - | chr6_1:11322393-11322412 | None:intergenic | 40.0% | |
| AAGAATATGGTAAGCCACAG+TGG | - | chr6_1:11322393-11322412 | None:intergenic | 40.0% | |
| GTCAACAACGAATTCTCAGA+TGG | - | chr6_1:11322550-11322569 | None:intergenic | 40.0% | |
| ! | GAGAGTACAAGATCCAATGG+CGG | + | chr6_1:11318783-11318802 | Msa0875140:exon | 45.0% |
| TAACCTATGAAGCACGGACA+CGG | + | chr6_1:11319128-11319147 | Msa0875140:intron | 45.0% | |
| ! | TGTCTCACATGTGTCGTTGT+CGG | + | chr6_1:11319838-11319857 | Msa0875140:intron | 45.0% |
| ! | TAATCTAAGGTGTGGCACAG+TGG | - | chr6_1:11319871-11319890 | None:intergenic | 45.0% |
| TGTGCCACACCTTAGATTAG+AGG | + | chr6_1:11319872-11319891 | Msa0875140:intron | 45.0% | |
| TGCCGAGCTTGTAACAGATT+AGG | + | chr6_1:11319904-11319923 | Msa0875140:intron | 45.0% | |
| ! | GTACCGACACCTCTAATCAA+AGG | - | chr6_1:11320133-11320152 | None:intergenic | 45.0% |
| !! | TAGAGGTGTCGGTACTATAG+AGG | + | chr6_1:11320138-11320157 | Msa0875140:intron | 45.0% |
| AACAATGACGCTCTGTACGT+TGG | - | chr6_1:11320420-11320439 | None:intergenic | 45.0% | |
| ! | CAGAGCGTCATTGTTTGAGT+CGG | + | chr6_1:11320425-11320444 | Msa0875140:CDS | 45.0% |
| CGATTGATGAGGATGTGTTG+AGG | + | chr6_1:11320454-11320473 | Msa0875140:CDS | 45.0% | |
| AGGATAGAGTGAAGATTGCG+AGG | + | chr6_1:11320496-11320515 | Msa0875140:CDS | 45.0% | |
| TGCGAGGATGATGATTGTTG+AGG | + | chr6_1:11320512-11320531 | Msa0875140:CDS | 45.0% | |
| TCCCAAGAGTTTGCATTGCT+TGG | + | chr6_1:11320662-11320681 | Msa0875140:CDS | 45.0% | |
| GCCAAGCAATGCAAACTCTT+GGG | - | chr6_1:11320666-11320685 | None:intergenic | 45.0% | |
| AGCCAAGCAATGCAAACTCT+TGG | - | chr6_1:11320667-11320686 | None:intergenic | 45.0% | |
| GTTTGCATTGCTTGGCTATG+AGG | + | chr6_1:11320670-11320689 | Msa0875140:CDS | 45.0% | |
| TAGAGATGAAAGTCCTAGGC+CGG | + | chr6_1:11320728-11320747 | Msa0875140:CDS | 45.0% | |
| AGACAACGTGATAGCTGTGT+CGG | + | chr6_1:11320791-11320810 | Msa0875140:CDS | 45.0% | |
| ! | CATCATATGTACCGGTGTTG+AGG | + | chr6_1:11320985-11321004 | Msa0875140:CDS | 45.0% |
| TGCCAAATACCTGTCGATGT+TGG | + | chr6_1:11321097-11321116 | Msa0875140:CDS | 45.0% | |
| ! | CGCAATTTAGGGTACATCTC+TGG | - | chr6_1:11321143-11321162 | None:intergenic | 45.0% |
| GATTTGGATGGGAAGGTGAA+TGG | + | chr6_1:11321227-11321246 | Msa0875140:CDS | 45.0% | |
| !! | GGTGCCGTTGAAATCTGTTT+CGG | + | chr6_1:11321248-11321267 | Msa0875140:CDS | 45.0% |
| TCACGTACTGCGAATATCGA+TGG | - | chr6_1:11321280-11321299 | None:intergenic | 45.0% | |
| TCCCCGATTTCCATATTGTC+TGG | - | chr6_1:11322074-11322093 | None:intergenic | 45.0% | |
| CGAAGTCACTGGACAAATCA+TGG | + | chr6_1:11322130-11322149 | Msa0875140:CDS | 45.0% | |
| ! | TTGAGATGAAGTGTCCACTG+TGG | + | chr6_1:11322376-11322395 | Msa0875140:three_prime_UTR | 45.0% |
| ! | TTGAGATGAAGTGTCCACTG+TGG | + | chr6_1:11322376-11322395 | Msa0875140:three_prime_UTR | 45.0% |
| GACAATGCAGAACTTTCCTG+CGG | - | chr6_1:11322501-11322520 | None:intergenic | 45.0% | |
| GACAATCGTCAGATGCTACA+AGG | + | chr6_1:11322567-11322586 | Msa0875140:three_prime_UTR | 45.0% | |
| !! | TGATAATAATAATAATAATT+TGG | + | chr6_1:11319194-11319213 | Msa0875140:intron | 5.0% |
| !! | GATAATAATAATAATAATTT+GGG | + | chr6_1:11319195-11319214 | Msa0875140:intron | 5.0% |
| AGAGGTGGATCTACTCTTCG+TGG | + | chr6_1:11318823-11318842 | Msa0875140:CDS | 50.0% | |
| CACGGACACAAACACTGGAT+AGG | + | chr6_1:11319146-11319165 | Msa0875140:intron | 50.0% | |
| AGCATAATCAGGTGGGACAC+TGG | + | chr6_1:11319504-11319523 | Msa0875140:intron | 50.0% | |
| TCCTTACACCCTCTGATGCA+CGG | - | chr6_1:11319551-11319570 | None:intergenic | 50.0% | |
| ! | GGCACCTCTAATCTAAGGTG+TGG | - | chr6_1:11319879-11319898 | None:intergenic | 50.0% |
| ! | GCACTGGCACCTCTAATCTA+AGG | - | chr6_1:11319884-11319903 | None:intergenic | 50.0% |
| TGACCCACTTAGGACAAGAG+TGG | + | chr6_1:11320251-11320270 | Msa0875140:CDS | 50.0% | |
| GCGTCATTGTTTGAGTCGGA+TGG | + | chr6_1:11320429-11320448 | Msa0875140:CDS | 50.0% | |
| GGCAAAAAAGAACGGGGCAT+TGG | + | chr6_1:11320614-11320633 | Msa0875140:CDS | 50.0% | |
| TTGCTTGGCTATGAGGCTGA+TGG | + | chr6_1:11320677-11320696 | Msa0875140:CDS | 50.0% | |
| TGCTTGGCTATGAGGCTGAT+GGG | + | chr6_1:11320678-11320697 | Msa0875140:CDS | 50.0% | |
| GGGTGAGAAGATTTCGAACC+CGG | + | chr6_1:11320698-11320717 | Msa0875140:CDS | 50.0% | |
| AAAATGAGGCCGGTTGAAGG+AGG | + | chr6_1:11320915-11320934 | Msa0875140:CDS | 50.0% | |
| GTGGTGCAAAAGGACTTGAC+AGG | + | chr6_1:11321191-11321210 | Msa0875140:CDS | 50.0% | |
| CAAGATCCAATGGCGGTGTC+TGG | + | chr6_1:11318790-11318809 | Msa0875140:exon | 55.0% | |
| GTGTCTGGTAGAGGAAGCAG+AGG | + | chr6_1:11318805-11318824 | Msa0875140:CDS | 55.0% | |
| TCTGGTAGAGGAAGCAGAGG+TGG | + | chr6_1:11318808-11318827 | Msa0875140:CDS | 55.0% | |
| TGTCCGTGTCCGTGCTTCAT+AGG | - | chr6_1:11319134-11319153 | None:intergenic | 55.0% | |
| ACGGACACGGACACAAACAC+TGG | + | chr6_1:11319141-11319160 | Msa0875140:intron | 55.0% | |
| ACTGGACACAGGACACACCA+AGG | + | chr6_1:11319522-11319541 | Msa0875140:intron | 55.0% | |
| ! | CAAGGTGTCCGTGCATCAGA+GGG | + | chr6_1:11319540-11319559 | Msa0875140:intron | 55.0% |
| ! | TCCGTGCATCAGAGGGTGTA+AGG | + | chr6_1:11319547-11319566 | Msa0875140:intron | 55.0% |
| TGTTACAAGCTCGGCAGCAC+TGG | - | chr6_1:11319900-11319919 | None:intergenic | 55.0% | |
| GTCGGATGGTCCGATTGATG+AGG | + | chr6_1:11320443-11320462 | Msa0875140:CDS | 55.0% | |
| GGATCTTCAAACTCCGGCCT+AGG | - | chr6_1:11320744-11320763 | None:intergenic | 55.0% | |
| CAACGTGATAGCTGTGTCGG+TGG | + | chr6_1:11320794-11320813 | Msa0875140:CDS | 55.0% | |
| ! | GTCGGTGGTGGTTAGATCTG+TGG | + | chr6_1:11320809-11320828 | Msa0875140:CDS | 55.0% |
| ! | ACCGGTGTTGAGGCAAGTTG+AGG | + | chr6_1:11320995-11321014 | Msa0875140:CDS | 55.0% |
| GCCTCAACTTGCCTCAACAC+CGG | - | chr6_1:11320999-11321018 | None:intergenic | 55.0% | |
| TGTTAACTGTTGCGTGCCGC+AGG | + | chr6_1:11322482-11322501 | Msa0875140:three_prime_UTR | 55.0% | |
| CCTCTACCAGACACCGCCAT+TGG | - | chr6_1:11318799-11318818 | None:intergenic | 60.0% | |
| CCAATGGCGGTGTCTGGTAG+AGG | + | chr6_1:11318796-11318815 | Msa0875140:exon | 60.0% | |
| TCAGGTGGGACACTGGACAC+AGG | + | chr6_1:11319511-11319530 | Msa0875140:intron | 60.0% | |
| CCTCTGATGCACGGACACCT+TGG | - | chr6_1:11319542-11319561 | None:intergenic | 60.0% | |
| ! | CCAAGGTGTCCGTGCATCAG+AGG | + | chr6_1:11319539-11319558 | Msa0875140:intron | 60.0% |
| CTAAGGTGTGGCACAGTGGC+AGG | - | chr6_1:11319867-11319886 | None:intergenic | 60.0% | |
| ! | CGTGATAGCTGTGTCGGTGG+TGG | + | chr6_1:11320797-11320816 | Msa0875140:CDS | 60.0% |
| AAATCGGGGACGCTTCCACC+TGG | + | chr6_1:11322084-11322103 | Msa0875140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 11318556 | 11322792 | 11318556 | ID=Msa0875140;Name=Msa0875140 |
| chr6_1 | mRNA | 11318556 | 11322792 | 11318556 | ID=Msa0875140-mRNA-1;Parent=Msa0875140;Name=Msa0875140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=243|1|1|1|1|1|3|454|555 |
| chr6_1 | exon | 11318556 | 11318951 | 11318556 | ID=Msa0875140-mRNA-1:exon:3482;Parent=Msa0875140-mRNA-1 |
| chr6_1 | exon | 11320195 | 11321433 | 11320195 | ID=Msa0875140-mRNA-1:exon:3483;Parent=Msa0875140-mRNA-1 |
| chr6_1 | exon | 11322063 | 11322792 | 11322063 | ID=Msa0875140-mRNA-1:exon:3484;Parent=Msa0875140-mRNA-1 |
| chr6_1 | five_prime_UTR | 11318556 | 11318798 | 11318556 | ID=Msa0875140-mRNA-1:five_prime_utr;Parent=Msa0875140-mRNA-1 |
| chr6_1 | CDS | 11318799 | 11318951 | 11318799 | ID=Msa0875140-mRNA-1:cds;Parent=Msa0875140-mRNA-1 |
| chr6_1 | CDS | 11320195 | 11321433 | 11320195 | ID=Msa0875140-mRNA-1:cds;Parent=Msa0875140-mRNA-1 |
| chr6_1 | CDS | 11322063 | 11322338 | 11322063 | ID=Msa0875140-mRNA-1:cds;Parent=Msa0875140-mRNA-1 |
| chr6_1 | three_prime_UTR | 11322339 | 11322792 | 11322339 | ID=Msa0875140-mRNA-1:three_prime_utr;Parent=Msa0875140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
