Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876510 | XP_013451314.2 | 89.197 | 685 | 62 | 4 | 1 | 675 | 60 | 742 | 0.0 | 1235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876510 | sp|B8E2D3|PGK_DICTD | 28.753 | 393 | 264 | 7 | 83 | 462 | 4 | 393 | 8.94e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876510 | A0A396HHU0 | 89.197 | 685 | 62 | 4 | 1 | 675 | 60 | 742 | 0.0 | 1235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0674220 | Msa0876510 | 0.805910 | 1.062631e-49 | -8.615850e-47 |
| Msa0837990 | Msa0876510 | 0.804430 | 2.168505e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876510 | MtrunA17_Chr6g0457691 | 89.197 | 685 | 62 | 4 | 1 | 675 | 60 | 742 | 0.0 | 1235 |
| Msa0876510 | MtrunA17_Chr8g0337231 | 41.538 | 195 | 107 | 3 | 471 | 658 | 120 | 314 | 3.80e-42 | 155 |
| Msa0876510 | MtrunA17_Chr2g0310601 | 28.922 | 408 | 264 | 9 | 83 | 470 | 78 | 479 | 4.12e-42 | 159 |
| Msa0876510 | MtrunA17_Chr8g0337241 | 38.974 | 195 | 112 | 2 | 471 | 658 | 83 | 277 | 4.92e-39 | 145 |
| Msa0876510 | MtrunA17_Chr2g0310621 | 27.889 | 398 | 270 | 7 | 82 | 465 | 7 | 401 | 7.51e-37 | 142 |
| Msa0876510 | MtrunA17_Chr2g0310611 | 28.392 | 398 | 268 | 7 | 82 | 465 | 97 | 491 | 1.14e-36 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876510 | AT3G12780.1 | 28.960 | 404 | 269 | 8 | 83 | 470 | 80 | 481 | 3.41e-42 | 160 |
| Msa0876510 | AT1G56190.2 | 28.499 | 393 | 267 | 7 | 92 | 470 | 13 | 405 | 6.32e-41 | 154 |
| Msa0876510 | AT1G56190.1 | 28.499 | 393 | 267 | 7 | 92 | 470 | 86 | 478 | 3.30e-40 | 154 |
| Msa0876510 | AT5G17660.1 | 41.206 | 199 | 110 | 3 | 472 | 665 | 116 | 312 | 5.89e-40 | 149 |
| Msa0876510 | AT1G79550.1 | 27.387 | 398 | 272 | 7 | 82 | 465 | 7 | 401 | 3.15e-39 | 149 |
| Msa0876510 | AT1G79550.2 | 27.387 | 398 | 272 | 7 | 82 | 465 | 7 | 401 | 3.15e-39 | 149 |
Find 125 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATACAGAAAATAATT+TGG | 0.158783 | 6_1:-14711194 | Msa0876510:CDS |
| TTCTGAAATTTGACAACTTT+TGG | 0.162141 | 6_1:+14714303 | None:intergenic |
| AAGAGATGTACCTTAAAATT+TGG | 0.193455 | 6_1:+14714635 | None:intergenic |
| TGCTACATATGGTTTCTTAT+TGG | 0.205027 | 6_1:+14712257 | None:intergenic |
| CAATCTCTTGTGGTTGATAT+TGG | 0.219246 | 6_1:-14710426 | Msa0876510:CDS |
| AGGAAAGATTTGAACTTTCT+TGG | 0.253177 | 6_1:-14710228 | Msa0876510:CDS |
| TTTCCTAGGGAGGAGCTATT+TGG | 0.263940 | 6_1:-14712863 | Msa0876510:CDS |
| AAGAAAGCTCCCTGGTGTTT+TGG | 0.283155 | 6_1:-14710965 | Msa0876510:CDS |
| TTGAAAACCCATTTGGAGTT+AGG | 0.283264 | 6_1:-14708932 | Msa0876510:CDS |
| TTCATCGTCTTCTATAAATA+TGG | 0.286549 | 6_1:-14711025 | Msa0876510:CDS |
| TTGAGAATGCTTCAGTAGTA+TGG | 0.302070 | 6_1:-14711002 | Msa0876510:CDS |
| GTCAAATTTCAGAAATATAA+TGG | 0.303499 | 6_1:-14714294 | Msa0876510:CDS |
| ACCGATTCATTGTCAGTCTT+AGG | 0.308763 | 6_1:-14708600 | Msa0876510:three_prime_UTR |
| TGTTCAGGTTTATTGAAATC+AGG | 0.309787 | 6_1:+14709581 | None:intergenic |
| TGTTAGATTTACATTGATAA+TGG | 0.311231 | 6_1:-14712929 | Msa0876510:intron |
| TTCTTCTCGAAATGGCAAAA+AGG | 0.321279 | 6_1:-14710251 | Msa0876510:CDS |
| TGAAATCTGATTGATTCTTC+TGG | 0.327378 | 6_1:+14712786 | None:intergenic |
| GAAATATAATGGTGCTCTAT+TGG | 0.327541 | 6_1:-14714283 | Msa0876510:CDS |
| GCAGTTTCAATCTAGTGAAT+TGG | 0.334346 | 6_1:-14714428 | Msa0876510:five_prime_UTR |
| AGTACAAGTTCCTATTGATT+TGG | 0.339322 | 6_1:-14712001 | Msa0876510:CDS |
| AGATTTGAACTTTCTTGGTT+TGG | 0.339411 | 6_1:-14710223 | Msa0876510:CDS |
| ACAGGAAATGGAGAGTTAAC+AGG | 0.350856 | 6_1:-14714038 | Msa0876510:intron |
| GACAAGCTATCAGAGATTAA+AGG | 0.350979 | 6_1:-14712519 | Msa0876510:CDS |
| TTAATCCATCAACCCTTTGA+TGG | 0.352473 | 6_1:-14708793 | Msa0876510:exon |
| TTCTGCTATGCTTGTCTAGC+TGG | 0.352678 | 6_1:-14712327 | Msa0876510:CDS |
| ACAAAATCGGTTGCAGTTGC+AGG | 0.358296 | 6_1:-14712677 | Msa0876510:intron |
| ATCAGAGATAACTGAAGTTT+CGG | 0.358520 | 6_1:-14708844 | Msa0876510:CDS |
| ATACAAGTTATTCCACTTCA+AGG | 0.362776 | 6_1:-14712552 | Msa0876510:CDS |
| TTCAGAACTTTGCACAAAAT+CGG | 0.372685 | 6_1:-14712690 | Msa0876510:CDS |
| TATGTATGGTTCAACTCGTT+TGG | 0.378788 | 6_1:+14708747 | None:intergenic |
| TTTCAAATAATGCATGCATT+AGG | 0.383644 | 6_1:-14712024 | Msa0876510:CDS |
| GATTCAAAGATAAAGTTAGA+TGG | 0.385695 | 6_1:+14711214 | None:intergenic |
| TCTCTAAGAGTTTGTATATG+AGG | 0.387618 | 6_1:+14712887 | None:intergenic |
| ATTAGTTCTTGTGTCAATAC+AGG | 0.389562 | 6_1:-14709885 | Msa0876510:intron |
| TGTTTAAGAAGACTTGTTCA+TGG | 0.389874 | 6_1:+14714382 | None:intergenic |
| CAGAGAAAGCAGCTTCCTTT+CGG | 0.391800 | 6_1:-14712095 | Msa0876510:CDS |
| CAATCTGACCTAACTCCAAA+TGG | 0.392554 | 6_1:+14708924 | None:intergenic |
| GTGGAATAACTTGTATTTGA+AGG | 0.405723 | 6_1:+14712559 | None:intergenic |
| TCAATAAACCTGAACATAGA+TGG | 0.407609 | 6_1:-14709574 | Msa0876510:CDS |
| TTGTTCCAGTTGATTTCAAA+AGG | 0.410530 | 6_1:+14710468 | None:intergenic |
| AAACTCTTAGAGAATTTCCT+AGG | 0.415158 | 6_1:-14712877 | Msa0876510:CDS |
| TTGCAAAGGTAAGCTTGTAT+TGG | 0.417788 | 6_1:-14708979 | Msa0876510:CDS |
| GTAAACCATCAAAGGGTTGA+TGG | 0.418189 | 6_1:+14708788 | None:intergenic |
| AGGCATACAATTGCTACATA+TGG | 0.421000 | 6_1:+14712246 | None:intergenic |
| CCGATTCATTGTCAGTCTTA+GGG | 0.421799 | 6_1:-14708599 | Msa0876510:three_prime_UTR |
| GGTTTATTGAAATCAGGGTT+TGG | 0.423467 | 6_1:+14709587 | None:intergenic |
| TGGCTTGTTGAAAACCCATT+TGG | 0.426499 | 6_1:-14708939 | Msa0876510:CDS |
| CATTTGGAGTTAGGTCAGAT+TGG | 0.439570 | 6_1:-14708923 | Msa0876510:CDS |
| GTCCAGTGAAATTTGCTGTT+CGG | 0.441734 | 6_1:-14711167 | Msa0876510:CDS |
| TTCCATTTCACAAAGTCAAA+AGG | 0.444439 | 6_1:-14711239 | Msa0876510:intron |
| AGCATTCTCCATCTATGTTC+AGG | 0.447779 | 6_1:+14709566 | None:intergenic |
| ATTTGGAGTTAGGTCAGATT+GGG | 0.448877 | 6_1:-14708922 | Msa0876510:CDS |
| CAACGGTTTGGCATAAAGAA+TGG | 0.448972 | 6_1:-14710062 | Msa0876510:CDS |
| CAGTTGTTTCACAGTTTCCT+TGG | 0.451202 | 6_1:+14711091 | None:intergenic |
| CTGGATTCGACTCAACGGTT+TGG | 0.452981 | 6_1:-14710074 | Msa0876510:CDS |
| TTACGGTCCACCAAATCAAT+AGG | 0.453766 | 6_1:+14711991 | None:intergenic |
| GTGGTGGATCTTCTAGCATC+TGG | 0.456954 | 6_1:-14709521 | Msa0876510:CDS |
| GAAAACATCATTCGGTACAT+AGG | 0.457434 | 6_1:+14708873 | None:intergenic |
| GTTCATGGAGAATCTTCATA+AGG | 0.460401 | 6_1:+14714397 | None:intergenic |
| TTCAATCATTTCTTCTTACC+CGG | 0.461521 | 6_1:-14709912 | Msa0876510:CDS |
| AGTTGAACTCGAGCTATGTA+TGG | 0.462443 | 6_1:+14708733 | None:intergenic |
| TATGCTAGAGAATTATCTTC+AGG | 0.463431 | 6_1:-14712423 | Msa0876510:CDS |
| ATTAAATATTTACATGAAGC+CGG | 0.468498 | 6_1:-14712749 | Msa0876510:CDS |
| TGGAGAATGACCAAAGTGAT+TGG | 0.469238 | 6_1:-14708959 | Msa0876510:CDS |
| AGGTCATCCTGGTCAGTGAT+TGG | 0.478276 | 6_1:-14712721 | Msa0876510:CDS |
| GTTCAGGTTTATTGAAATCA+GGG | 0.480490 | 6_1:+14709582 | None:intergenic |
| ATGATTTAGAAAACATCATT+CGG | 0.483245 | 6_1:+14708865 | None:intergenic |
| ACTGTGAAACAACTGTTGTT+GGG | 0.483485 | 6_1:-14711083 | Msa0876510:CDS |
| AGCTCAAAGTAAACCATCAA+AGG | 0.484582 | 6_1:+14708780 | None:intergenic |
| GTTCGGAGTGAGCACACAAA+TGG | 0.486243 | 6_1:-14711150 | Msa0876510:CDS |
| CTCCGAACAGCAAATTTCAC+TGG | 0.486466 | 6_1:+14711165 | None:intergenic |
| ACAAGTTCCTATTGATTTGG+TGG | 0.489903 | 6_1:-14711998 | Msa0876510:CDS |
| TGCTTGTCTCAGGGAGTGAA+TGG | 0.490304 | 6_1:-14714489 | Msa0876510:intron |
| AACTGTGAAACAACTGTTGT+TGG | 0.492620 | 6_1:-14711084 | Msa0876510:CDS |
| CTAACATGTCTATGTCAACT+TGG | 0.492716 | 6_1:+14708535 | None:intergenic |
| TCTCATACAATTCAGATTGG+AGG | 0.499200 | 6_1:-14712129 | Msa0876510:intron |
| ATACAGAAAATAATTTGGAT+TGG | 0.500099 | 6_1:-14711189 | Msa0876510:CDS |
| TTTCAACAAGCCAATCACTT+TGG | 0.505944 | 6_1:+14708949 | None:intergenic |
| AACGGTTTGGCATAAAGAAT+GGG | 0.506777 | 6_1:-14710061 | Msa0876510:intron |
| GAGCTTCACTAAATGCCTTA+CGG | 0.512317 | 6_1:+14711974 | None:intergenic |
| CCCTAAGACTGACAATGAAT+CGG | 0.513084 | 6_1:+14708599 | None:intergenic |
| TATTGATTTGGTGGACCGTA+AGG | 0.513262 | 6_1:-14711989 | Msa0876510:CDS |
| TGGTTTGGAGATGAATGAAA+AGG | 0.513271 | 6_1:-14710208 | Msa0876510:intron |
| TGTCAACTCATTCAACCATA+AGG | 0.520513 | 6_1:-14714009 | Msa0876510:intron |
| GACACAAGAACTAATTCTCC+CGG | 0.523551 | 6_1:+14709893 | None:intergenic |
| ATCTTTAATTGAAGCAGTGG+TGG | 0.525354 | 6_1:-14709537 | Msa0876510:CDS |
| TTTCCAAATAGCTCCTCCCT+AGG | 0.531477 | 6_1:+14712860 | None:intergenic |
| TGAGAATGCTTCAGTAGTAT+GGG | 0.535353 | 6_1:-14711001 | Msa0876510:CDS |
| TTTGCAATCTGATGTGGAAG+AGG | 0.537583 | 6_1:-14709036 | Msa0876510:CDS |
| ATTCTTGTTAAATTAAGCCA+AGG | 0.543754 | 6_1:-14711108 | Msa0876510:CDS |
| CTATCAAGAGCCAAAACACC+AGG | 0.549378 | 6_1:+14710955 | None:intergenic |
| TGTTCCAGTTGATTTCAAAA+GGG | 0.550382 | 6_1:+14710469 | None:intergenic |
| ATGTCTATGTCAACTTGGCA+TGG | 0.553424 | 6_1:+14708540 | None:intergenic |
| GACCAGGATGACCTTTGCTC+CGG | 0.554244 | 6_1:+14712730 | None:intergenic |
| GCTCAAAGTAAACCATCAAA+GGG | 0.554554 | 6_1:+14708781 | None:intergenic |
| AACTTTATGAGAGTTTGAGA+AGG | 0.556596 | 6_1:+14712377 | None:intergenic |
| TAGATTTACATTGATAATGG+AGG | 0.558111 | 6_1:-14712926 | Msa0876510:CDS |
| AACTCTTAGAGAATTTCCTA+GGG | 0.558416 | 6_1:-14712876 | Msa0876510:CDS |
| CTTGTGGTTGATATTGGAAG+TGG | 0.560186 | 6_1:-14710420 | Msa0876510:intron |
| AATCTGACCTAACTCCAAAT+GGG | 0.561481 | 6_1:+14708925 | None:intergenic |
| CTCAAAGGAAGAAAGCTCCC+TGG | 0.567863 | 6_1:-14710973 | Msa0876510:CDS |
| GATAATGGAGGAAAGCTGAA+TGG | 0.568872 | 6_1:-14712914 | Msa0876510:CDS |
| GAGATCTTTAATTGAAGCAG+TGG | 0.570067 | 6_1:-14709540 | Msa0876510:CDS |
| AGCCGGAGCAAAGGTCATCC+TGG | 0.571711 | 6_1:-14712732 | Msa0876510:CDS |
| CATACAATTCAGATTGGAGG+CGG | 0.578134 | 6_1:-14712126 | Msa0876510:intron |
| TCTTCTAGCATCTGGTGGAA+AGG | 0.588936 | 6_1:-14709513 | Msa0876510:intron |
| GTGGATCTTCTAGCATCTGG+TGG | 0.592765 | 6_1:-14709518 | Msa0876510:CDS |
| TTTCAATCTAGTGAATTGGA+TGG | 0.594154 | 6_1:-14714424 | Msa0876510:exon |
| CGACGCAACTCAATCTCTTG+TGG | 0.600863 | 6_1:-14710436 | Msa0876510:CDS |
| TCAATCATTTCTTCTTACCC+GGG | 0.602783 | 6_1:-14709911 | Msa0876510:CDS |
| TTTACATGAAGCCGGAGCAA+AGG | 0.603305 | 6_1:-14712741 | Msa0876510:CDS |
| GTAGTATGGGAATTTCTCAA+AGG | 0.603551 | 6_1:-14710988 | Msa0876510:CDS |
| GCTGTCTGGATTCGACTCAA+CGG | 0.605612 | 6_1:-14710079 | Msa0876510:CDS |
| GGTTTGTCCAATCACTGACC+AGG | 0.610231 | 6_1:+14712714 | None:intergenic |
| GTTCACTGCAACACAGAACA+AGG | 0.610697 | 6_1:+14714674 | None:intergenic |
| TCTTAGAGAATTTCCTAGGG+AGG | 0.612761 | 6_1:-14712873 | Msa0876510:CDS |
| ACACAAGAACTAATTCTCCC+GGG | 0.618753 | 6_1:+14709894 | None:intergenic |
| AACAAAACCCTGACATCTGG+AGG | 0.622684 | 6_1:+14712065 | None:intergenic |
| CCATCCAAAAGTCCATGAGA+AGG | 0.625113 | 6_1:+14711850 | None:intergenic |
| GGTGCTCTATTGGCTATGCA+AGG | 0.635323 | 6_1:-14714273 | Msa0876510:intron |
| AAAGTTCTAGCATCAACTGT+CGG | 0.655580 | 6_1:-14712360 | Msa0876510:CDS |
| GCTATTTGGAAAAGTCGTCA+TGG | 0.659882 | 6_1:-14712849 | Msa0876510:CDS |
| CACAACCTACACAATACACG+TGG | 0.677935 | 6_1:-14714729 | Msa0876510:five_prime_UTR |
| TAAAACCACGTGTATTGTGT+AGG | 0.691492 | 6_1:+14714724 | None:intergenic |
| TATCAAGAGCCAAAACACCA+GGG | 0.722460 | 6_1:+14710956 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTAATTAAATTTTGAA+GGG | - | chr6_1:14709795-14709814 | Msa0876510:intron | 10.0% |
| !!! | ACAAATTTGATTATAAATTT+TGG | - | chr6_1:14711653-14711672 | Msa0876510:intron | 10.0% |
| !!! | ATATTTTCATTTTAAGATAA+TGG | - | chr6_1:14712021-14712040 | Msa0876510:CDS | 10.0% |
| !! | AAAAAATAGATAATGAAAAA+GGG | + | chr6_1:14713150-14713169 | None:intergenic | 10.0% |
| !! | AACAGATAAAGAATAAAAAA+AGG | + | chr6_1:14709198-14709217 | None:intergenic | 15.0% |
| !!! | TAATTGATGTTATTTTTTAC+AGG | - | chr6_1:14709234-14709253 | Msa0876510:intron | 15.0% |
| !! | ATATAAACTATATTACCTTA+TGG | + | chr6_1:14709299-14709318 | None:intergenic | 15.0% |
| !!! | TTTATGATATTTTACCTTTA+AGG | - | chr6_1:14709692-14709711 | Msa0876510:intron | 15.0% |
| !!! | TTATGATATTTTACCTTTAA+GGG | - | chr6_1:14709693-14709712 | Msa0876510:intron | 15.0% |
| !!! | GAGATTTAATTAAATTTTGA+AGG | - | chr6_1:14709794-14709813 | Msa0876510:intron | 15.0% |
| !! | AGATAATCACTTATTTAATA+TGG | + | chr6_1:14710684-14710703 | None:intergenic | 15.0% |
| !!! | AATCGATCAAATTTTATTAT+CGG | + | chr6_1:14711508-14711527 | None:intergenic | 15.0% |
| !!! | AATTTGATTATAAATTTTGG+CGG | - | chr6_1:14711656-14711675 | Msa0876510:intron | 15.0% |
| !! | ATCAAATACAGAAAATAATT+TGG | - | chr6_1:14712096-14712115 | Msa0876510:CDS | 15.0% |
| !! | GAAAAAATAGATAATGAAAA+AGG | + | chr6_1:14713151-14713170 | None:intergenic | 15.0% |
| !!! | TTTCTTCATTTATCTATTTT+AGG | - | chr6_1:14713320-14713339 | Msa0876510:intron | 15.0% |
| !! | TGTTAGTTATAGTTCAAATT+CGG | - | chr6_1:14708705-14708724 | Msa0876510:three_prime_UTR | 20.0% |
| !! | TATTTGTCAAATAGGTTATT+AGG | + | chr6_1:14708761-14708780 | None:intergenic | 20.0% |
| !! | GTCAAATTTCAGAAATATAA+TGG | - | chr6_1:14708996-14709015 | Msa0876510:CDS | 20.0% |
| !!! | TTTTGGTTTAATAGTCATTT+TGG | - | chr6_1:14709064-14709083 | Msa0876510:intron | 20.0% |
| !!! | ATGTTATTTTTTACAGGAAA+TGG | - | chr6_1:14709240-14709259 | Msa0876510:intron | 20.0% |
| !! | AATATCATAACATAAGATTG+TGG | + | chr6_1:14709334-14709353 | None:intergenic | 20.0% |
| !! | ATAATAAATGCGATAATACT+TGG | - | chr6_1:14709379-14709398 | Msa0876510:intron | 20.0% |
| !! | TTTATTAGAATGAAAATGAG+AGG | - | chr6_1:14709501-14709520 | Msa0876510:intron | 20.0% |
| !! | TGAAACAATTGTATACTATA+AGG | + | chr6_1:14709613-14709632 | None:intergenic | 20.0% |
| !! | TTATAGTATACAATTGTTTC+AGG | - | chr6_1:14709612-14709631 | Msa0876510:intron | 20.0% |
| !! | AAGGTAAAATATCATAAACA+AGG | + | chr6_1:14709690-14709709 | None:intergenic | 20.0% |
| !! | TTTAATTAAATCTCAACACA+AGG | + | chr6_1:14709788-14709807 | None:intergenic | 20.0% |
| !!! | TAATTAAATTTTGAAGGGTT+AGG | - | chr6_1:14709800-14709819 | Msa0876510:intron | 20.0% |
| !!! | AATTAAATTTTGAAGGGTTA+GGG | - | chr6_1:14709801-14709820 | Msa0876510:intron | 20.0% |
| !! | TATTATTTGAGCATCAATTT+AGG | + | chr6_1:14710200-14710219 | None:intergenic | 20.0% |
| !! | TGTTAGATTTACATTGATAA+TGG | - | chr6_1:14710361-14710380 | Msa0876510:intron | 20.0% |
| !! | ATTAAATATTTACATGAAGC+CGG | - | chr6_1:14710541-14710560 | Msa0876510:intron | 20.0% |
| !! | TGAATTGTATGAGAAATAAA+CGG | + | chr6_1:14711155-14711174 | None:intergenic | 20.0% |
| !!! | TATTGTATCCAAAAGATTTT+TGG | - | chr6_1:14711378-14711397 | Msa0876510:intron | 20.0% |
| !! | TTCAATGCTTAAAATTTGTA+AGG | - | chr6_1:14711590-14711609 | Msa0876510:intron | 20.0% |
| !! | ATACAGAAAATAATTTGGAT+TGG | - | chr6_1:14712101-14712120 | Msa0876510:CDS | 20.0% |
| !!! | CAAGCTAAAAAAGATTTTAA+TGG | + | chr6_1:14713185-14713204 | None:intergenic | 20.0% |
| !! | ATATATGCAAAATGAAGATT+AGG | + | chr6_1:14713670-14713689 | None:intergenic | 20.0% |
| !! | CAATGATTTATAAGACTAAT+GGG | + | chr6_1:14713882-14713901 | None:intergenic | 20.0% |
| !!! | TTTGAATAGTTTTGAGTTTA+AGG | - | chr6_1:14714191-14714210 | Msa0876510:intron | 20.0% |
| !! | ATGATTTAGAAAACATCATT+CGG | + | chr6_1:14714428-14714447 | None:intergenic | 20.0% |
| !! | AAAAATCAATTGTTGAATTG+AGG | - | chr6_1:14714646-14714665 | Msa0876510:five_prime_UTR | 20.0% |
| ! | AAGAGATGTACCTTAAAATT+TGG | + | chr6_1:14708658-14708677 | None:intergenic | 25.0% |
| ! | TAACTAACATTGAAGTATGT+GGG | + | chr6_1:14708694-14708713 | None:intergenic | 25.0% |
| ! | ATAACTAACATTGAAGTATG+TGG | + | chr6_1:14708695-14708714 | None:intergenic | 25.0% |
| ! | ATCAGCAATATTTGTCAAAT+AGG | + | chr6_1:14708769-14708788 | None:intergenic | 25.0% |
| !! | TTTTATGTTTAAGCAACTTG+GGG | + | chr6_1:14708953-14708972 | None:intergenic | 25.0% |
| !! | GTTTTATGTTTAAGCAACTT+GGG | + | chr6_1:14708954-14708973 | None:intergenic | 25.0% |
| !! | TGTTTTATGTTTAAGCAACT+TGG | + | chr6_1:14708955-14708974 | None:intergenic | 25.0% |
| !!! | TTCTGAAATTTGACAACTTT+TGG | + | chr6_1:14708990-14709009 | None:intergenic | 25.0% |
| !!! | ACTTTACTTATGTTGCTTTT+TGG | - | chr6_1:14709047-14709066 | Msa0876510:intron | 25.0% |
| !! | TATGAACAAACCGATATTTT+CGG | - | chr6_1:14709970-14709989 | Msa0876510:intron | 25.0% |
| !!! | TTTTAGTCTTTGTATCAAAG+CGG | + | chr6_1:14710002-14710021 | None:intergenic | 25.0% |
| ! | ATCTAGCATCTTAATATTTC+AGG | + | chr6_1:14710029-14710048 | None:intergenic | 25.0% |
| ! | TGAAACATTATTAACCATGT+GGG | - | chr6_1:14710134-14710153 | Msa0876510:intron | 25.0% |
| !! | AAATTCGACGACTTTTTAAA+TGG | + | chr6_1:14710171-14710190 | None:intergenic | 25.0% |
| ! | TTTAAAAAGTCGTCGAATTT+AGG | - | chr6_1:14710171-14710190 | Msa0876510:intron | 25.0% |
| !!! | TTTGCTGTATATTTTTGTTC+TGG | - | chr6_1:14710317-14710336 | Msa0876510:intron | 25.0% |
| !!! | TAGATTTACATTGATAATGG+AGG | - | chr6_1:14710364-14710383 | Msa0876510:intron | 25.0% |
| ! | ATTTCTGATAAGAATCCTAT+AGG | + | chr6_1:14710711-14710730 | None:intergenic | 25.0% |
| ! | ATTTCTCATACAATTCAGAT+TGG | - | chr6_1:14711158-14711177 | Msa0876510:CDS | 25.0% |
| ! | TTTCAAATAATGCATGCATT+AGG | - | chr6_1:14711266-14711285 | Msa0876510:intron | 25.0% |
| !!! | TCGATTTTTAACTTTGATCT+AGG | - | chr6_1:14711522-14711541 | Msa0876510:intron | 25.0% |
| !!! | TTTTTAACTTTGATCTAGGT+TGG | - | chr6_1:14711526-14711545 | Msa0876510:intron | 25.0% |
| ! | GTTCAAATATGTGGTTAATT+AGG | - | chr6_1:14711684-14711703 | Msa0876510:intron | 25.0% |
| ! | AATATGTGGTTAATTAGGTT+CGG | - | chr6_1:14711689-14711708 | Msa0876510:intron | 25.0% |
| !! | GCTAATGAAGTTTAAAATCT+CGG | + | chr6_1:14711777-14711796 | None:intergenic | 25.0% |
| ! | AAATATCAGTGTTCAAATTC+TGG | + | chr6_1:14711984-14712003 | None:intergenic | 25.0% |
| !!! | TGATATTTGTAATTGATTCG+TGG | - | chr6_1:14711996-14712015 | Msa0876510:CDS | 25.0% |
| ! | GATTCAAAGATAAAGTTAGA+TGG | + | chr6_1:14712079-14712098 | None:intergenic | 25.0% |
| ! | ATTCTTGTTAAATTAAGCCA+AGG | - | chr6_1:14712182-14712201 | Msa0876510:intron | 25.0% |
| ! | TTCATCGTCTTCTATAAATA+TGG | - | chr6_1:14712265-14712284 | Msa0876510:CDS | 25.0% |
| ! | TGAATCATTATCCAGAAATA+TGG | + | chr6_1:14712386-14712405 | None:intergenic | 25.0% |
| ! | TATGCAAAATTCAAGATTTC+CGG | + | chr6_1:14712617-14712636 | None:intergenic | 25.0% |
| ! | TTTAAACTGCTTCAATCTTA+TGG | - | chr6_1:14712777-14712796 | Msa0876510:CDS | 25.0% |
| ! | GCAATGATTTATAAGACTAA+TGG | + | chr6_1:14713883-14713902 | None:intergenic | 25.0% |
| !!! | TACAAAGTATTGTCAAATAG+CGG | - | chr6_1:14714006-14714025 | Msa0876510:intron | 25.0% |
| ! | GTTATAGCACTATAATGTAT+AGG | - | chr6_1:14714039-14714058 | Msa0876510:intron | 25.0% |
| ! | ACTATTCAAAGAATACAAGT+TGG | + | chr6_1:14714181-14714200 | None:intergenic | 25.0% |
| !!! | CAATTTTTGAGATATTGCAA+AGG | - | chr6_1:14714297-14714316 | Msa0876510:CDS | 25.0% |
| ! | CAAATGCGTTCCAAATTTTA+AGG | - | chr6_1:14708645-14708664 | Msa0876510:three_prime_UTR | 30.0% |
| TTTATCTAAATGCTTGTCTC+AGG | - | chr6_1:14708791-14708810 | Msa0876510:three_prime_UTR | 30.0% | |
| TTATCTAAATGCTTGTCTCA+GGG | - | chr6_1:14708792-14708811 | Msa0876510:three_prime_UTR | 30.0% | |
| ! | CTTCTTAGCTCAATTTTCAT+TGG | - | chr6_1:14708840-14708859 | Msa0876510:CDS | 30.0% |
| TTTCAATCTAGTGAATTGGA+TGG | - | chr6_1:14708866-14708885 | Msa0876510:CDS | 30.0% | |
| ! | TGTTTAAGAAGACTTGTTCA+TGG | + | chr6_1:14708911-14708930 | None:intergenic | 30.0% |
| GAAATATAATGGTGCTCTAT+TGG | - | chr6_1:14709007-14709026 | Msa0876510:CDS | 30.0% | |
| ATAAGATTGTGGCACAAAAA+AGG | + | chr6_1:14709323-14709342 | None:intergenic | 30.0% | |
| ATGCATCATGTAAGGATATT+AGG | - | chr6_1:14709549-14709568 | Msa0876510:CDS | 30.0% | |
| TAGTATACAATTGTTTCAGG+AGG | - | chr6_1:14709615-14709634 | Msa0876510:intron | 30.0% | |
| !! | GATATTTTACCTTTAAGGGT+AGG | - | chr6_1:14709697-14709716 | Msa0876510:intron | 30.0% |
| ATATTTCTTCCTACCCTTAA+AGG | + | chr6_1:14709709-14709728 | None:intergenic | 30.0% | |
| ! | ATATTGTTGTTACTCTCACT+TGG | - | chr6_1:14709725-14709744 | Msa0876510:intron | 30.0% |
| ! | ACACTTTCTTTTCGTAAACA+AGG | - | chr6_1:14709754-14709773 | Msa0876510:intron | 30.0% |
| GTTAATAATGTTTCAGCACA+AGG | + | chr6_1:14710129-14710148 | None:intergenic | 30.0% | |
| CTGAAACATTATTAACCATG+TGG | - | chr6_1:14710133-14710152 | Msa0876510:intron | 30.0% | |
| GAAACATTATTAACCATGTG+GGG | - | chr6_1:14710135-14710154 | Msa0876510:intron | 30.0% | |
| ! | TCTCTAAGAGTTTGTATATG+AGG | + | chr6_1:14710406-14710425 | None:intergenic | 30.0% |
| AAACTCTTAGAGAATTTCCT+AGG | - | chr6_1:14710413-14710432 | Msa0876510:intron | 30.0% | |
| AACTCTTAGAGAATTTCCTA+GGG | - | chr6_1:14710414-14710433 | Msa0876510:intron | 30.0% | |
| ! | TGAAATCTGATTGATTCTTC+TGG | + | chr6_1:14710507-14710526 | None:intergenic | 30.0% |
| !!! | ATTTTGTGCAAAGTTCTGAA+GGG | + | chr6_1:14710600-14710619 | None:intergenic | 30.0% |
| TTCAGAACTTTGCACAAAAT+CGG | - | chr6_1:14710600-14710619 | Msa0876510:intron | 30.0% | |
| AGTGATTATCTCTATCCTAT+AGG | - | chr6_1:14710693-14710712 | Msa0876510:intron | 30.0% | |
| ! | GTGGAATAACTTGTATTTGA+AGG | + | chr6_1:14710734-14710753 | None:intergenic | 30.0% |
| ATACAAGTTATTCCACTTCA+AGG | - | chr6_1:14710738-14710757 | Msa0876510:intron | 30.0% | |
| TATGCTAGAGAATTATCTTC+AGG | - | chr6_1:14710867-14710886 | Msa0876510:intron | 30.0% | |
| AACTTTATGAGAGTTTGAGA+AGG | + | chr6_1:14710916-14710935 | None:intergenic | 30.0% | |
| TGCTACATATGGTTTCTTAT+TGG | + | chr6_1:14711036-14711055 | None:intergenic | 30.0% | |
| ! | AGTACAAGTTCCTATTGATT+TGG | - | chr6_1:14711289-14711308 | Msa0876510:intron | 30.0% |
| ! | GGAAAAACATGCAATTGTTT+TGG | + | chr6_1:14711422-14711441 | None:intergenic | 30.0% |
| !!! | TTTTGACTTTGTGAAATGGA+AGG | + | chr6_1:14712052-14712071 | None:intergenic | 30.0% |
| TTCCATTTCACAAAGTCAAA+AGG | - | chr6_1:14712051-14712070 | Msa0876510:CDS | 30.0% | |
| !!! | TTCCTTTTGACTTTGTGAAA+TGG | + | chr6_1:14712056-14712075 | None:intergenic | 30.0% |
| ACTATTCTACTCCATATTTC+TGG | - | chr6_1:14712372-14712391 | Msa0876510:CDS | 30.0% | |
| ACATCAATGTTGTCAAATAG+CGG | - | chr6_1:14712419-14712438 | Msa0876510:CDS | 30.0% | |
| ! | TTATGGTAGTCATATTTTGC+AGG | - | chr6_1:14712794-14712813 | Msa0876510:CDS | 30.0% |
| ! | TGTTCCAGTTGATTTCAAAA+GGG | + | chr6_1:14712824-14712843 | None:intergenic | 30.0% |
| ! | TTGTTCCAGTTGATTTCAAA+AGG | + | chr6_1:14712825-14712844 | None:intergenic | 30.0% |
| TAAGAGGAACAAGTAACATA+AGG | + | chr6_1:14712985-14713004 | None:intergenic | 30.0% | |
| TGAAAAGCTCAAATGTTAAG+AGG | + | chr6_1:14713001-14713020 | None:intergenic | 30.0% | |
| AGGAAAGATTTGAACTTTCT+TGG | - | chr6_1:14713062-14713081 | Msa0876510:intron | 30.0% | |
| AGATTTGAACTTTCTTGGTT+TGG | - | chr6_1:14713067-14713086 | Msa0876510:intron | 30.0% | |
| ATGAAAAAGGGTAGCAAAAA+AGG | + | chr6_1:14713138-14713157 | None:intergenic | 30.0% | |
| TTCAATCATTTCTTCTTACC+CGG | - | chr6_1:14713378-14713397 | Msa0876510:intron | 30.0% | |
| ! | ATTAGTTCTTGTGTCAATAC+AGG | - | chr6_1:14713405-14713424 | Msa0876510:intron | 30.0% |
| AAGAAGAGAACGATTAAAGT+CGG | + | chr6_1:14713454-14713473 | None:intergenic | 30.0% | |
| ATTTGATCCATCTATATCAC+AGG | + | chr6_1:14713541-14713560 | None:intergenic | 30.0% | |
| TGATTACAGTAAACTCAATC+TGG | + | chr6_1:14713601-14713620 | None:intergenic | 30.0% | |
| ! | GTTCAGGTTTATTGAAATCA+GGG | + | chr6_1:14713711-14713730 | None:intergenic | 30.0% |
| ! | TGTTCAGGTTTATTGAAATC+AGG | + | chr6_1:14713712-14713731 | None:intergenic | 30.0% |
| TCAATAAACCTGAACATAGA+TGG | - | chr6_1:14713716-14713735 | Msa0876510:intron | 30.0% | |
| TTAGATTCTCAACATTGATC+AGG | - | chr6_1:14714227-14714246 | Msa0876510:intron | 30.0% | |
| ATCAGAGATAACTGAAGTTT+CGG | - | chr6_1:14714446-14714465 | Msa0876510:five_prime_UTR | 30.0% | |
| TAAAACCACGTGTATTGTGT+AGG | + | chr6_1:14708569-14708588 | None:intergenic | 35.0% | |
| GCAGTTTCAATCTAGTGAAT+TGG | - | chr6_1:14708862-14708881 | Msa0876510:CDS | 35.0% | |
| GTTCATGGAGAATCTTCATA+AGG | + | chr6_1:14708896-14708915 | None:intergenic | 35.0% | |
| GAATGAATGTGTAAGACACT+TGG | + | chr6_1:14709153-14709172 | None:intergenic | 35.0% | |
| TGTCAACTCATTCAACCATA+AGG | - | chr6_1:14709281-14709300 | Msa0876510:intron | 35.0% | |
| ATAACAAAGATGCGTGTGAA+GGG | - | chr6_1:14709425-14709444 | Msa0876510:intron | 35.0% | |
| GAACGAAAATGCATCATGTA+AGG | - | chr6_1:14709541-14709560 | Msa0876510:CDS | 35.0% | |
| ACATACTCTATCTGTCATCA+TGG | - | chr6_1:14709573-14709592 | Msa0876510:CDS | 35.0% | |
| GTCACATTTCTTAGCAACTT+AGG | - | chr6_1:14709662-14709681 | Msa0876510:intron | 35.0% | |
| !! | TGTTCTGGCTCTAAGTATTA+TGG | - | chr6_1:14710332-14710351 | Msa0876510:intron | 35.0% |
| !! | GATTTTGTGCAAAGTTCTGA+AGG | + | chr6_1:14710601-14710620 | None:intergenic | 35.0% |
| TCATACAAAAAGCCTTGAAG+TGG | + | chr6_1:14710753-14710772 | None:intergenic | 35.0% | |
| GACAAGCTATCAGAGATTAA+AGG | - | chr6_1:14710771-14710790 | Msa0876510:intron | 35.0% | |
| ! | AAAGTTCTAGCATCAACTGT+CGG | - | chr6_1:14710930-14710949 | Msa0876510:intron | 35.0% |
| AGGCATACAATTGCTACATA+TGG | + | chr6_1:14711047-14711066 | None:intergenic | 35.0% | |
| TAATGCTATAACAGCAGAAG+AGG | + | chr6_1:14711067-14711086 | None:intergenic | 35.0% | |
| TCTATCGATATGAGAACTTG+AGG | + | chr6_1:14711124-14711143 | None:intergenic | 35.0% | |
| TCTCATACAATTCAGATTGG+AGG | - | chr6_1:14711161-14711180 | Msa0876510:CDS | 35.0% | |
| AAAAACAAAACCCTGACATC+TGG | + | chr6_1:14711231-14711250 | None:intergenic | 35.0% | |
| !!! | TGTCAGGGTTTTGTTTTTGT+TGG | - | chr6_1:14711233-14711252 | Msa0876510:intron | 35.0% |
| !! | ACAAGTTCCTATTGATTTGG+TGG | - | chr6_1:14711292-14711311 | Msa0876510:intron | 35.0% |
| !!! | ATCCAAAAGATTTTTGGTGC+AGG | - | chr6_1:14711384-14711403 | Msa0876510:intron | 35.0% |
| ! | TTCCTGCACCAAAAATCTTT+TGG | + | chr6_1:14711389-14711408 | None:intergenic | 35.0% |
| ! | TTGCATGTTTTTCCTTCTCA+TGG | - | chr6_1:14711428-14711447 | Msa0876510:intron | 35.0% |
| ! | TTTTCCTTCTCATGGACTTT+TGG | - | chr6_1:14711436-14711455 | Msa0876510:intron | 35.0% |
| CCAATTTCATCCAATGTTAC+AGG | + | chr6_1:14711570-14711589 | None:intergenic | 35.0% | |
| CCTGTAACATTGGATGAAAT+TGG | - | chr6_1:14711567-14711586 | Msa0876510:intron | 35.0% | |
| AACTGCTTCAACCATCTAAA+TGG | - | chr6_1:14711807-14711826 | Msa0876510:intron | 35.0% | |
| GACTTTGACAACCATTTAGA+TGG | + | chr6_1:14711821-14711840 | None:intergenic | 35.0% | |
| GTTCAAATTTCGATACGACA+TGG | + | chr6_1:14711878-14711897 | None:intergenic | 35.0% | |
| GTCAATGTGTTGTCAAATAG+TGG | - | chr6_1:14711933-14711952 | Msa0876510:CDS | 35.0% | |
| AACTGTGAAACAACTGTTGT+TGG | - | chr6_1:14712206-14712225 | Msa0876510:intron | 35.0% | |
| ACTGTGAAACAACTGTTGTT+GGG | - | chr6_1:14712207-14712226 | Msa0876510:intron | 35.0% | |
| TTGAGAATGCTTCAGTAGTA+TGG | - | chr6_1:14712288-14712307 | Msa0876510:CDS | 35.0% | |
| TGAGAATGCTTCAGTAGTAT+GGG | - | chr6_1:14712289-14712308 | Msa0876510:CDS | 35.0% | |
| GTAGTATGGGAATTTCTCAA+AGG | - | chr6_1:14712302-14712321 | Msa0876510:CDS | 35.0% | |
| AAAGAGTTGTAACGTCACTA+TGG | + | chr6_1:14712445-14712464 | None:intergenic | 35.0% | |
| AAAGTGTATCGCAGAAAGTA+GGG | + | chr6_1:14712491-14712510 | None:intergenic | 35.0% | |
| ! | AAAAGTGTATCGCAGAAAGT+AGG | + | chr6_1:14712492-14712511 | None:intergenic | 35.0% |
| ATATCTGCGATTGACAATAC+CGG | - | chr6_1:14712595-14712614 | Msa0876510:intron | 35.0% | |
| !!! | CATACCCTTTTGAAATCAAC+TGG | - | chr6_1:14712817-14712836 | Msa0876510:CDS | 35.0% |
| ! | CAATCTCTTGTGGTTGATAT+TGG | - | chr6_1:14712864-14712883 | Msa0876510:CDS | 35.0% |
| ! | ACATTTGAGCTTTTCATGAC+AGG | - | chr6_1:14713005-14713024 | Msa0876510:intron | 35.0% |
| !! | TGGACTTTTTCTTCTCGAAA+TGG | - | chr6_1:14713031-14713050 | Msa0876510:intron | 35.0% |
| TTCTTCTCGAAATGGCAAAA+AGG | - | chr6_1:14713039-14713058 | Msa0876510:intron | 35.0% | |
| ! | TGGTTTGGAGATGAATGAAA+AGG | - | chr6_1:14713082-14713101 | Msa0876510:intron | 35.0% |
| ! | AACGGTTTGGCATAAAGAAT+GGG | - | chr6_1:14713229-14713248 | Msa0876510:intron | 35.0% |
| TCAATCATTTCTTCTTACCC+GGG | - | chr6_1:14713379-14713398 | Msa0876510:intron | 35.0% | |
| CATCAATAGAGATGTATGCA+TGG | + | chr6_1:14713491-14713510 | None:intergenic | 35.0% | |
| TCTTAGTCCTGTGATATAGA+TGG | - | chr6_1:14713531-14713550 | Msa0876510:intron | 35.0% | |
| GGAGAAAGGAAAATAATCAC+AGG | + | chr6_1:14713633-14713652 | None:intergenic | 35.0% | |
| !! | CTTTAGTAGTTGATGGAGAA+AGG | + | chr6_1:14713647-14713666 | None:intergenic | 35.0% |
| ! | GATTAGGCTTTAGTAGTTGA+TGG | + | chr6_1:14713654-14713673 | None:intergenic | 35.0% |
| GGTTTATTGAAATCAGGGTT+TGG | + | chr6_1:14713706-14713725 | None:intergenic | 35.0% | |
| GAGATCTTTAATTGAAGCAG+TGG | - | chr6_1:14713750-14713769 | Msa0876510:intron | 35.0% | |
| ATCTTTAATTGAAGCAGTGG+TGG | - | chr6_1:14713753-14713772 | Msa0876510:intron | 35.0% | |
| TATGCATTGCAAGATGAGTA+AGG | + | chr6_1:14713848-14713867 | None:intergenic | 35.0% | |
| !! | GGTATTTTTGCAATCTGATG+TGG | - | chr6_1:14714248-14714267 | Msa0876510:intron | 35.0% |
| TTGCAAAGGTAAGCTTGTAT+TGG | - | chr6_1:14714311-14714330 | Msa0876510:CDS | 35.0% | |
| TTTCAACAAGCCAATCACTT+TGG | + | chr6_1:14714344-14714363 | None:intergenic | 35.0% | |
| ! | TTGAAAACCCATTTGGAGTT+AGG | - | chr6_1:14714358-14714377 | Msa0876510:CDS | 35.0% |
| AATCTGACCTAACTCCAAAT+GGG | + | chr6_1:14714368-14714387 | None:intergenic | 35.0% | |
| ! | ATTTGGAGTTAGGTCAGATT+GGG | - | chr6_1:14714368-14714387 | Msa0876510:CDS | 35.0% |
| !!! | GAAAAACATGTTTTAGAGCG+CGG | - | chr6_1:14714390-14714409 | Msa0876510:CDS | 35.0% |
| !!! | AAAAACATGTTTTAGAGCGC+GGG | - | chr6_1:14714391-14714410 | Msa0876510:CDS | 35.0% |
| GAAAACATCATTCGGTACAT+AGG | + | chr6_1:14714420-14714439 | None:intergenic | 35.0% | |
| TTAATCCATCAACCCTTTGA+TGG | - | chr6_1:14714497-14714516 | Msa0876510:intron | 35.0% | |
| GCTCAAAGTAAACCATCAAA+GGG | + | chr6_1:14714512-14714531 | None:intergenic | 35.0% | |
| AGCTCAAAGTAAACCATCAA+AGG | + | chr6_1:14714513-14714532 | None:intergenic | 35.0% | |
| TATGTATGGTTCAACTCGTT+TGG | + | chr6_1:14714546-14714565 | None:intergenic | 35.0% | |
| !! | GGCTTGAACTAATTTTGAGT+TGG | - | chr6_1:14714667-14714686 | Msa0876510:five_prime_UTR | 35.0% |
| ACAGGAAATGGAGAGTTAAC+AGG | - | chr6_1:14709252-14709271 | Msa0876510:intron | 40.0% | |
| ! | CACACGCATCTTTGTTATGT+TGG | + | chr6_1:14709423-14709442 | None:intergenic | 40.0% |
| CATAACAAAGATGCGTGTGA+AGG | - | chr6_1:14709424-14709443 | Msa0876510:intron | 40.0% | |
| TTTGAAGGGTTAGGGTGATA+AGG | - | chr6_1:14709809-14709828 | Msa0876510:intron | 40.0% | |
| AATACTGTTATGCGATAGCG+CGG | + | chr6_1:14709867-14709886 | None:intergenic | 40.0% | |
| CTTGTGTCGCAGAATAATAG+TGG | + | chr6_1:14709897-14709916 | None:intergenic | 40.0% | |
| GCAGTTATAGCACTATAACG+TGG | - | chr6_1:14709942-14709961 | Msa0876510:CDS | 40.0% | |
| GTTATAGCACTATAACGTGG+CGG | - | chr6_1:14709945-14709964 | Msa0876510:CDS | 40.0% | |
| GCGGATATGACCGAAAATAT+CGG | + | chr6_1:14709983-14710002 | None:intergenic | 40.0% | |
| ! | ATGATGTGCGGAAAAAGCAT+AGG | - | chr6_1:14710095-14710114 | Msa0876510:intron | 40.0% |
| ATCGCAATGATCGTCGTTAT+CGG | - | chr6_1:14710254-14710273 | Msa0876510:CDS | 40.0% | |
| !! | GATAATGGAGGAAAGCTGAA+TGG | - | chr6_1:14710376-14710395 | Msa0876510:intron | 40.0% |
| TCTTAGAGAATTTCCTAGGG+AGG | - | chr6_1:14710417-14710436 | Msa0876510:intron | 40.0% | |
| GCTATTTGGAAAAGTCGTCA+TGG | - | chr6_1:14710441-14710460 | Msa0876510:CDS | 40.0% | |
| AGTTGCAGGTACATTCGTAA+GGG | - | chr6_1:14710627-14710646 | Msa0876510:intron | 40.0% | |
| CATACAATTCAGATTGGAGG+CGG | - | chr6_1:14711164-14711183 | Msa0876510:CDS | 40.0% | |
| !! | TTTTTAGCCTCCAGATGTCA+GGG | - | chr6_1:14711218-14711237 | Msa0876510:CDS | 40.0% |
| TTACGGTCCACCAAATCAAT+AGG | + | chr6_1:14711302-14711321 | None:intergenic | 40.0% | |
| !! | TATTGATTTGGTGGACCGTA+AGG | - | chr6_1:14711301-14711320 | Msa0876510:intron | 40.0% |
| GAGCTTCACTAAATGCCTTA+CGG | + | chr6_1:14711319-14711338 | None:intergenic | 40.0% | |
| !! | GGTTAATTAGGTTCGGTGAA+TGG | - | chr6_1:14711696-14711715 | Msa0876510:intron | 40.0% |
| GTTGAAGCAGTTCAAATGTG+TGG | + | chr6_1:14711799-14711818 | None:intergenic | 40.0% | |
| !! | GTCCAGTGAAATTTGCTGTT+CGG | - | chr6_1:14712123-14712142 | Msa0876510:intron | 40.0% |
| ! | CAGTTGTTTCACAGTTTCCT+TGG | + | chr6_1:14712202-14712221 | None:intergenic | 40.0% |
| TATCAAGAGCCAAAACACCA+GGG | + | chr6_1:14712337-14712356 | None:intergenic | 40.0% | |
| CTCTTTAGCGTAGCAGAATT+CGG | - | chr6_1:14712459-14712478 | Msa0876510:CDS | 40.0% | |
| TCTTTAGCGTAGCAGAATTC+GGG | - | chr6_1:14712460-14712479 | Msa0876510:CDS | 40.0% | |
| !!! | TCGCAGATGGCTAACTTTTT+TGG | - | chr6_1:14712692-14712711 | Msa0876510:CDS | 40.0% |
| ! | CTTGTGGTTGATATTGGAAG+TGG | - | chr6_1:14712870-14712889 | Msa0876510:CDS | 40.0% |
| TTCTCGAAATGGCAAAAAGG+AGG | - | chr6_1:14713042-14713061 | Msa0876510:intron | 40.0% | |
| AAAAAGGCTAGGAACAAGGT+AGG | + | chr6_1:14713122-14713141 | None:intergenic | 40.0% | |
| AGCAAAAAAGGCTAGGAACA+AGG | + | chr6_1:14713126-14713145 | None:intergenic | 40.0% | |
| AAAGGGTAGCAAAAAAGGCT+AGG | + | chr6_1:14713133-14713152 | None:intergenic | 40.0% | |
| ! | CAACGGTTTGGCATAAAGAA+TGG | - | chr6_1:14713228-14713247 | Msa0876510:intron | 40.0% |
| ACACAAGAACTAATTCTCCC+GGG | + | chr6_1:14713399-14713418 | None:intergenic | 40.0% | |
| GACACAAGAACTAATTCTCC+CGG | + | chr6_1:14713400-14713419 | None:intergenic | 40.0% | |
| ACAGGACTAAGATGCTGAAA+TGG | + | chr6_1:14713523-14713542 | None:intergenic | 40.0% | |
| AGCATTCTCCATCTATGTTC+AGG | + | chr6_1:14713727-14713746 | None:intergenic | 40.0% | |
| ATGTCAAACAGCAGCTATAG+TGG | - | chr6_1:14713940-14713959 | Msa0876510:intron | 40.0% | |
| GCTATCTCAATTGACAACAC+TGG | - | chr6_1:14714085-14714104 | Msa0876510:intron | 40.0% | |
| TTTGCAATCTGATGTGGAAG+AGG | - | chr6_1:14714254-14714273 | Msa0876510:intron | 40.0% | |
| TGGAGAATGACCAAAGTGAT+TGG | - | chr6_1:14714331-14714350 | Msa0876510:CDS | 40.0% | |
| !! | TGGCTTGTTGAAAACCCATT+TGG | - | chr6_1:14714351-14714370 | Msa0876510:CDS | 40.0% |
| CAATCTGACCTAACTCCAAA+TGG | + | chr6_1:14714369-14714388 | None:intergenic | 40.0% | |
| ! | CATTTGGAGTTAGGTCAGAT+TGG | - | chr6_1:14714367-14714386 | Msa0876510:CDS | 40.0% |
| !!! | AAAACATGTTTTAGAGCGCG+GGG | - | chr6_1:14714392-14714411 | Msa0876510:CDS | 40.0% |
| GTAAACCATCAAAGGGTTGA+TGG | + | chr6_1:14714505-14714524 | None:intergenic | 40.0% | |
| AGTTGAACTCGAGCTATGTA+TGG | + | chr6_1:14714560-14714579 | None:intergenic | 40.0% | |
| ! | ACCGATTCATTGTCAGTCTT+AGG | - | chr6_1:14714690-14714709 | Msa0876510:five_prime_UTR | 40.0% |
| CCCTAAGACTGACAATGAAT+CGG | + | chr6_1:14714694-14714713 | None:intergenic | 40.0% | |
| CCGATTCATTGTCAGTCTTA+GGG | - | chr6_1:14714691-14714710 | Msa0876510:five_prime_UTR | 40.0% | |
| CACAACCTACACAATACACG+TGG | - | chr6_1:14708561-14708580 | Msa0876510:three_prime_UTR | 45.0% | |
| GTTCACTGCAACACAGAACA+AGG | + | chr6_1:14708619-14708638 | None:intergenic | 45.0% | |
| GACTGCGCAATACACATTCA+GGG | + | chr6_1:14709091-14709110 | None:intergenic | 45.0% | |
| TGACTGCGCAATACACATTC+AGG | + | chr6_1:14709092-14709111 | None:intergenic | 45.0% | |
| GGTGATAAGGATGTAACTCC+TGG | - | chr6_1:14709822-14709841 | Msa0876510:intron | 45.0% | |
| TATTTGACAACACTGAGGCC+AGG | + | chr6_1:14709843-14709862 | None:intergenic | 45.0% | |
| CACATCATGCCTAAGTCCAA+AGG | + | chr6_1:14710083-14710102 | None:intergenic | 45.0% | |
| TTGGACTTAGGCATGATGTG+CGG | - | chr6_1:14710083-14710102 | Msa0876510:CDS | 45.0% | |
| TTTCCTAGGGAGGAGCTATT+TGG | - | chr6_1:14710427-14710446 | Msa0876510:CDS | 45.0% | |
| TTTCCAAATAGCTCCTCCCT+AGG | + | chr6_1:14710433-14710452 | None:intergenic | 45.0% | |
| TTTACATGAAGCCGGAGCAA+AGG | - | chr6_1:14710549-14710568 | Msa0876510:intron | 45.0% | |
| ACAAAATCGGTTGCAGTTGC+AGG | - | chr6_1:14710613-14710632 | Msa0876510:intron | 45.0% | |
| CAGTTGCAGGTACATTCGTA+AGG | - | chr6_1:14710626-14710645 | Msa0876510:intron | 45.0% | |
| TTCTGCTATGCTTGTCTAGC+TGG | - | chr6_1:14710963-14710982 | Msa0876510:CDS | 45.0% | |
| CAGAGAAAGCAGCTTCCTTT+CGG | - | chr6_1:14711195-14711214 | Msa0876510:CDS | 45.0% | |
| TCTGGAGGCTAAAAACCGAA+AGG | + | chr6_1:14711213-14711232 | None:intergenic | 45.0% | |
| !!! | GTTTTTAGCCTCCAGATGTC+AGG | - | chr6_1:14711217-14711236 | Msa0876510:CDS | 45.0% |
| AACAAAACCCTGACATCTGG+AGG | + | chr6_1:14711228-14711247 | None:intergenic | 45.0% | |
| CCATCCAAAAGTCCATGAGA+AGG | + | chr6_1:14711443-14711462 | None:intergenic | 45.0% | |
| ! | CCTTCTCATGGACTTTTGGA+TGG | - | chr6_1:14711440-14711459 | Msa0876510:intron | 45.0% |
| GCGGCAAGAGTTCAAATATG+TGG | - | chr6_1:14711675-14711694 | Msa0876510:intron | 45.0% | |
| CTCCGAACAGCAAATTTCAC+TGG | + | chr6_1:14712128-14712147 | None:intergenic | 45.0% | |
| ! | AAGAAAGCTCCCTGGTGTTT+TGG | - | chr6_1:14712325-14712344 | Msa0876510:CDS | 45.0% |
| CTATCAAGAGCCAAAACACC+AGG | + | chr6_1:14712338-14712357 | None:intergenic | 45.0% | |
| ! | GCCAGTAGAATTTTCGCAGA+TGG | - | chr6_1:14712679-14712698 | Msa0876510:CDS | 45.0% |
| GCCATCTGCGAAAATTCTAC+TGG | + | chr6_1:14712683-14712702 | None:intergenic | 45.0% | |
| ! | GAGCTTTTCATGACAGGCAA+TGG | - | chr6_1:14713011-14713030 | Msa0876510:intron | 45.0% |
| !!! | TTAGCTTGTTTTGCGCTGTC+TGG | - | chr6_1:14713197-14713216 | Msa0876510:intron | 45.0% |
| TGTATGCATGGCATCGCTAA+TGG | + | chr6_1:14713479-14713498 | None:intergenic | 45.0% | |
| GGACTAAGATGCTGAAATGG+TGG | + | chr6_1:14713520-14713539 | None:intergenic | 45.0% | |
| TCTTCTAGCATCTGGTGGAA+AGG | - | chr6_1:14713777-14713796 | Msa0876510:intron | 45.0% | |
| ATCATTGCTCGCAGCATTTG+AGG | - | chr6_1:14713895-14713914 | Msa0876510:intron | 45.0% | |
| TGCTTGTCTCAGGGAGTGAA+TGG | - | chr6_1:14708801-14708820 | Msa0876510:exon | 50.0% | |
| ! | GGTGCTCTATTGGCTATGCA+AGG | - | chr6_1:14709017-14709036 | Msa0876510:CDS | 50.0% |
| GCGGCTATTTGACAACACTG+AGG | + | chr6_1:14709848-14709867 | None:intergenic | 50.0% | |
| ! | TGCAGACAAGGGTGTGTGTT+AGG | + | chr6_1:14710057-14710076 | None:intergenic | 50.0% |
| AACACACACCCTTGTCTGCA+AGG | - | chr6_1:14710057-14710076 | Msa0876510:intron | 50.0% | |
| TCCAAAGGCCTTGCAGACAA+GGG | + | chr6_1:14710068-14710087 | None:intergenic | 50.0% | |
| TCTGCAAGGCCTTTGGACTT+AGG | - | chr6_1:14710071-14710090 | Msa0876510:CDS | 50.0% | |
| TGGTTAACGCAATCCCCACA+TGG | + | chr6_1:14710151-14710170 | None:intergenic | 50.0% | |
| AGGTCATCCTGGTCAGTGAT+TGG | - | chr6_1:14710569-14710588 | Msa0876510:intron | 50.0% | |
| GGTTTGTCCAATCACTGACC+AGG | + | chr6_1:14710579-14710598 | None:intergenic | 50.0% | |
| TGACCTGGGACCTGTAACAT+TGG | - | chr6_1:14711557-14711576 | Msa0876510:intron | 50.0% | |
| CATCCAATGTTACAGGTCCC+AGG | + | chr6_1:14711563-14711582 | None:intergenic | 50.0% | |
| CTGGTACGCTAGTGCTATAG+CGG | + | chr6_1:14711965-14711984 | None:intergenic | 50.0% | |
| GTTCGGAGTGAGCACACAAA+TGG | - | chr6_1:14712140-14712159 | Msa0876510:intron | 50.0% | |
| CTCAAAGGAAGAAAGCTCCC+TGG | - | chr6_1:14712317-14712336 | Msa0876510:CDS | 50.0% | |
| CGACGCAACTCAATCTCTTG+TGG | - | chr6_1:14712854-14712873 | Msa0876510:CDS | 50.0% | |
| GCTGTCTGGATTCGACTCAA+CGG | - | chr6_1:14713211-14713230 | Msa0876510:intron | 50.0% | |
| CTGGATTCGACTCAACGGTT+TGG | - | chr6_1:14713216-14713235 | Msa0876510:intron | 50.0% | |
| !! | GTGGTGGATCTTCTAGCATC+TGG | - | chr6_1:14713769-14713788 | Msa0876510:intron | 50.0% |
| GTGGATCTTCTAGCATCTGG+TGG | - | chr6_1:14713772-14713791 | Msa0876510:intron | 50.0% | |
| ACCCTTGTCTGCAAGGCCTT+TGG | - | chr6_1:14710064-14710083 | Msa0876510:CDS | 55.0% | |
| GTCCAAAGGCCTTGCAGACA+AGG | + | chr6_1:14710069-14710088 | None:intergenic | 55.0% | |
| GACCAGGATGACCTTTGCTC+CGG | + | chr6_1:14710563-14710582 | None:intergenic | 55.0% | |
| AGGTTGGATGCCTGTTGACC+TGG | - | chr6_1:14711542-14711561 | Msa0876510:intron | 55.0% | |
| GGTTGGATGCCTGTTGACCT+GGG | - | chr6_1:14711543-14711562 | Msa0876510:intron | 55.0% | |
| GTTACAGGTCCCAGGTCAAC+AGG | + | chr6_1:14711555-14711574 | None:intergenic | 55.0% | |
| AGCCGGAGCAAAGGTCATCC+TGG | - | chr6_1:14710558-14710577 | Msa0876510:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 14708550 | 14714762 | 14708550 | ID=Msa0876510;Name=Msa0876510 |
| chr6_1 | mRNA | 14708550 | 14714762 | 14708550 | ID=Msa0876510-mRNA-1;Parent=Msa0876510;Name=Msa0876510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=189|0.91|0.92|1|0.83|0.76|13|262|676 |
| chr6_1 | exon | 14708550 | 14709063 | 14708550 | ID=Msa0876510-mRNA-1:exon:4234;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14709514 | 14709612 | 14709514 | ID=Msa0876510-mRNA-1:exon:4233;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14709886 | 14709970 | 14709886 | ID=Msa0876510-mRNA-1:exon:4232;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14710062 | 14710111 | 14710062 | ID=Msa0876510-mRNA-1:exon:4231;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14710209 | 14710285 | 14710209 | ID=Msa0876510-mRNA-1:exon:4230;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14710421 | 14710496 | 14710421 | ID=Msa0876510-mRNA-1:exon:4229;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14710954 | 14711246 | 14710954 | ID=Msa0876510-mRNA-1:exon:4228;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14711851 | 14712136 | 14711851 | ID=Msa0876510-mRNA-1:exon:4227;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14712254 | 14712597 | 14712254 | ID=Msa0876510-mRNA-1:exon:4226;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14712678 | 14712945 | 14712678 | ID=Msa0876510-mRNA-1:exon:4225;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14714010 | 14714056 | 14714010 | ID=Msa0876510-mRNA-1:exon:4224;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14714274 | 14714499 | 14714274 | ID=Msa0876510-mRNA-1:exon:4223;Parent=Msa0876510-mRNA-1 |
| chr6_1 | exon | 14714646 | 14714762 | 14714646 | ID=Msa0876510-mRNA-1:exon:4222;Parent=Msa0876510-mRNA-1 |
| chr6_1 | five_prime_UTR | 14714646 | 14714762 | 14714646 | ID=Msa0876510-mRNA-1:five_prime_utr;Parent=Msa0876510-mRNA-1 |
| chr6_1 | five_prime_UTR | 14714428 | 14714499 | 14714428 | ID=Msa0876510-mRNA-1:five_prime_utr;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14714274 | 14714427 | 14714274 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14714010 | 14714056 | 14714010 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14712678 | 14712945 | 14712678 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14712254 | 14712597 | 14712254 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14711851 | 14712136 | 14711851 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14710954 | 14711246 | 14710954 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14710421 | 14710496 | 14710421 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14710209 | 14710285 | 14710209 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14710062 | 14710111 | 14710062 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14709886 | 14709970 | 14709886 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14709514 | 14709612 | 14709514 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | CDS | 14708812 | 14709063 | 14708812 | ID=Msa0876510-mRNA-1:cds;Parent=Msa0876510-mRNA-1 |
| chr6_1 | three_prime_UTR | 14708550 | 14708811 | 14708550 | ID=Msa0876510-mRNA-1:three_prime_utr;Parent=Msa0876510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
