AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0674220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674220 MtrunA17_Chr4g0017231 94.481 308 4 4 1 297 1 306 0.0 574
Msa0674220 MtrunA17_Chr2g0305051 52.991 234 92 2 60 284 54 278 1.61e-76 244
Msa0674220 MtrunA17_Chr4g0057771 35.211 213 118 5 89 282 31 242 9.37e-37 131
Msa0674220 MtrunA17_Chr1g0181801 29.885 174 101 4 103 258 136 306 9.79e-17 79.3
Msa0674220 MtrunA17_Chr8g0337051 34.109 129 67 5 87 202 21 144 3.70e-16 75.5
Msa0674220 MtrunA17_Chr7g0263541 29.310 174 102 4 103 258 61 231 6.28e-16 76.3
Msa0674220 MtrunA17_Chr4g0018221 26.131 199 108 6 91 277 58 229 6.01e-13 67.4
Msa0674220 MtrunA17_Chr5g0428971 25.628 199 109 6 91 277 35 206 9.05e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674220 AT5G47840.1 71.806 227 55 1 80 297 57 283 2.30e-116 337
Msa0674220 AT5G47840.2 66.960 227 52 2 80 297 57 269 1.79e-105 308
Msa0674220 AT5G35170.1 52.500 240 100 3 58 288 55 289 4.08e-78 248
Msa0674220 AT5G35170.2 52.500 240 100 3 58 288 55 289 4.17e-78 248
Msa0674220 AT5G63400.1 33.333 213 122 5 89 282 35 246 9.97e-34 124
Msa0674220 AT5G50370.1 32.597 181 104 4 94 257 41 220 6.67e-30 114
Msa0674220 AT5G50370.2 32.934 167 103 3 95 253 51 216 1.53e-28 109
Msa0674220 AT5G63400.2 37.324 142 84 2 95 232 50 190 3.51e-28 107
Msa0674220 AT2G37250.1 28.000 250 147 7 36 258 3 246 2.10e-20 89.4
Msa0674220 AT2G39270.1 29.592 196 112 4 88 258 65 259 2.70e-18 83.6
Msa0674220 AT5G26667.1 33.094 139 75 5 77 202 4 137 8.12e-17 77.8
Msa0674220 AT5G26667.3 33.094 139 75 5 77 202 4 137 9.79e-17 77.4
Msa0674220 AT5G26667.2 33.094 139 75 5 77 202 4 137 9.79e-17 77.4
Msa0674220 AT5G26667.4 33.094 139 75 5 77 202 4 137 9.79e-17 77.4
Msa0674220 AT4G25280.1 30.986 142 86 4 84 215 50 189 5.44e-15 73.6
Msa0674220 AT4G25280.2 30.986 142 86 4 84 215 50 189 5.44e-15 73.6
Msa0674220 AT3G60180.1 27.000 200 107 6 90 277 24 196 2.10e-13 68.2
Msa0674220 AT3G60180.2 27.000 200 107 6 90 277 24 196 2.10e-13 68.2

Find 83 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTCATGTTATGATTTC+CGG 0.184990 4_4:-21392102 Msa0674220:CDS
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_4:-21387279 Msa0674220:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_4:+21392364 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_4:+21387233 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_4:-21390400 Msa0674220:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_4:-21392523 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_4:-21390650 Msa0674220:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_4:-21390449 Msa0674220:CDS
ATTTCCGGTGCACCTGCTTC+TGG 0.315897 4_4:-21392087 Msa0674220:intron
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_4:-21387531 Msa0674220:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_4:-21387296 Msa0674220:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_4:-21387190 Msa0674220:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_4:-21388980 Msa0674220:intron
GCATATGAACCACCAGTAAC+AGG 0.349980 4_4:+21387267 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_4:+21392370 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_4:-21389335 Msa0674220:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_4:+21389299 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_4:-21389311 Msa0674220:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_4:+21390370 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_4:-21387581 Msa0674220:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_4:-21390407 Msa0674220:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_4:-21392404 Msa0674220:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_4:+21390457 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_4:-21390627 Msa0674220:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_4:-21390679 Msa0674220:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_4:-21387371 Msa0674220:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_4:-21390399 Msa0674220:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_4:+21390587 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_4:+21392231 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_4:-21390708 Msa0674220:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_4:-21390692 Msa0674220:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_4:-21392491 Msa0674220:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_4:-21389331 Msa0674220:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_4:+21389229 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_4:+21388984 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_4:-21390678 Msa0674220:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_4:-21390662 Msa0674220:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_4:+21390417 None:intergenic
TGAGTTCCTTTACCAGAAGC+AGG 0.493219 4_4:+21392075 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_4:-21390460 Msa0674220:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_4:+21392232 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_4:+21388989 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_4:-21392403 Msa0674220:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_4:-21392133 Msa0674220:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_4:-21390456 Msa0674220:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_4:+21389228 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_4:+21392408 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_4:-21387276 Msa0674220:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_4:-21387603 Msa0674220:CDS
TTTACCAGAAGCAGGTGCAC+CGG 0.552509 4_4:+21392083 None:intergenic
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_4:-21392127 Msa0674220:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_4:-21387301 Msa0674220:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_4:-21392490 Msa0674220:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_4:+21387347 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_4:-21390621 Msa0674220:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_4:-21387325 Msa0674220:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_4:-21387206 Msa0674220:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_4:-21390675 Msa0674220:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_4:-21387553 Msa0674220:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_4:+21387592 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_4:-21392145 Msa0674220:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_4:+21387444 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_4:-21390612 Msa0674220:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_4:+21392102 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_4:-21390422 Msa0674220:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_4:-21389256 Msa0674220:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_4:-21390588 Msa0674220:intron
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_4:+21387243 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_4:-21389310 Msa0674220:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_4:-21390620 Msa0674220:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_4:+21387268 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_4:-21387455 Msa0674220:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_4:-21389261 Msa0674220:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_4:+21390418 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_4:-21389016 Msa0674220:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_4:-21392142 Msa0674220:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_4:-21389348 Msa0674220:CDS
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_4:+21392243 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_4:+21390588 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_4:-21389019 Msa0674220:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_4:-21392130 Msa0674220:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_4:+21392256 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_4:+21387271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG - chr4_4:21387482-21387501 Msa0674220:three_prime_UTR 0.0%
!! TTATGATTATGATTATTATT+TGG + chr4_4:21387321-21387340 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG + chr4_4:21390159-21390178 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG - chr4_4:21387192-21387211 Msa0674220:three_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG + chr4_4:21387315-21387334 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG + chr4_4:21387647-21387666 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG + chr4_4:21387815-21387834 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG + chr4_4:21388546-21388565 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG + chr4_4:21388869-21388888 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG + chr4_4:21388870-21388889 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG + chr4_4:21388951-21388970 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG + chr4_4:21389143-21389162 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG - chr4_4:21389182-21389201 Msa0674220:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG + chr4_4:21389502-21389521 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG - chr4_4:21389501-21389520 Msa0674220:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG - chr4_4:21389606-21389625 Msa0674220:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG - chr4_4:21390071-21390090 Msa0674220:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG - chr4_4:21390072-21390091 Msa0674220:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG + chr4_4:21390160-21390179 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG + chr4_4:21390701-21390720 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG - chr4_4:21390702-21390721 Msa0674220:intron 15.0%
!! TGAAGTGTATATTAAATAAT+TGG - chr4_4:21390858-21390877 Msa0674220:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG + chr4_4:21391411-21391430 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG + chr4_4:21391785-21391804 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG - chr4_4:21387191-21387210 Msa0674220:three_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG + chr4_4:21388547-21388566 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG - chr4_4:21388873-21388892 Msa0674220:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG - chr4_4:21388880-21388899 Msa0674220:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG - chr4_4:21389649-21389668 Msa0674220:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG + chr4_4:21389827-21389846 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG + chr4_4:21389828-21389847 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG + chr4_4:21389929-21389948 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG - chr4_4:21389930-21389949 Msa0674220:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG - chr4_4:21390313-21390332 Msa0674220:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG + chr4_4:21390491-21390510 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG + chr4_4:21390492-21390511 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG - chr4_4:21390627-21390646 Msa0674220:CDS 20.0%
!! TTATATCTTTATACATGGAA+AGG + chr4_4:21390696-21390715 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG - chr4_4:21391331-21391350 Msa0674220:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG + chr4_4:21391420-21391439 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG + chr4_4:21391550-21391569 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG - chr4_4:21391790-21391809 Msa0674220:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG + chr4_4:21392338-21392357 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG + chr4_4:21392452-21392471 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG - chr4_4:21392450-21392469 Msa0674220:exon 20.0%
! AGCATTTATCTATCTTAAAC+CGG + chr4_4:21388061-21388080 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG - chr4_4:21388203-21388222 Msa0674220:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG + chr4_4:21388209-21388228 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG + chr4_4:21388210-21388229 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG - chr4_4:21388245-21388264 Msa0674220:intron 25.0%
! ATATAATGCGATATTCCATT+TGG + chr4_4:21388614-21388633 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG + chr4_4:21388877-21388896 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG - chr4_4:21388879-21388898 Msa0674220:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG + chr4_4:21389315-21389334 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG - chr4_4:21389314-21389333 Msa0674220:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG - chr4_4:21389552-21389571 Msa0674220:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG - chr4_4:21389613-21389632 Msa0674220:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG + chr4_4:21389905-21389924 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG + chr4_4:21390055-21390074 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG + chr4_4:21390182-21390201 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG + chr4_4:21390262-21390281 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG - chr4_4:21390264-21390283 Msa0674220:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG - chr4_4:21390265-21390284 Msa0674220:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG + chr4_4:21390531-21390550 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG + chr4_4:21390836-21390855 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG + chr4_4:21390885-21390904 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG + chr4_4:21390886-21390905 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG - chr4_4:21390911-21390930 Msa0674220:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG + chr4_4:21390924-21390943 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG + chr4_4:21390925-21390944 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG - chr4_4:21390926-21390945 Msa0674220:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG - chr4_4:21391569-21391588 Msa0674220:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG - chr4_4:21391574-21391593 Msa0674220:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG - chr4_4:21391575-21391594 Msa0674220:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG + chr4_4:21391819-21391838 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG - chr4_4:21391819-21391838 Msa0674220:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG - chr4_4:21391837-21391856 Msa0674220:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG - chr4_4:21391838-21391857 Msa0674220:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG + chr4_4:21392012-21392031 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG - chr4_4:21392062-21392081 Msa0674220:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG - chr4_4:21392311-21392330 Msa0674220:CDS 25.0%
! ATACAGAAAATGGTAAAGAA+CGG + chr4_4:21392442-21392461 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG + chr4_4:21392495-21392514 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG - chr4_4:21392492-21392511 Msa0674220:five_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG - chr4_4:21387227-21387246 Msa0674220:three_prime_UTR 30.0%
AGAGTAAGTGACGAAAAAAT+GGG - chr4_4:21387228-21387247 Msa0674220:three_prime_UTR 30.0%
TTCTTCATCATCTTCTTTGA+AGG - chr4_4:21387278-21387297 Msa0674220:three_prime_UTR 30.0%
TCTTCATCATCTTCTTTGAA+GGG - chr4_4:21387279-21387298 Msa0674220:three_prime_UTR 30.0%
ACCATAGAAGAATGAGAAAA+GGG + chr4_4:21387453-21387472 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG + chr4_4:21387454-21387473 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG - chr4_4:21387537-21387556 Msa0674220:CDS 30.0%
ATTAGCAGCATTAGCATAAT+AGG - chr4_4:21387947-21387966 Msa0674220:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG + chr4_4:21388049-21388068 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG + chr4_4:21388050-21388069 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG - chr4_4:21388214-21388233 Msa0674220:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG - chr4_4:21388215-21388234 Msa0674220:intron 30.0%
ATGATTATCTCAAATAACCC+TGG + chr4_4:21388235-21388254 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG - chr4_4:21388246-21388265 Msa0674220:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG + chr4_4:21388569-21388588 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG - chr4_4:21388781-21388800 Msa0674220:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG - chr4_4:21388834-21388853 Msa0674220:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG + chr4_4:21388862-21388881 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG - chr4_4:21388909-21388928 Msa0674220:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG - chr4_4:21389099-21389118 Msa0674220:intron 30.0%
GATAAATTACAATGAAGCTG+AGG + chr4_4:21389385-21389404 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG + chr4_4:21389580-21389599 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG - chr4_4:21389685-21389704 Msa0674220:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG + chr4_4:21389900-21389919 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG + chr4_4:21389924-21389943 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG + chr4_4:21390456-21390475 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG - chr4_4:21390460-21390479 Msa0674220:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG + chr4_4:21390573-21390592 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG - chr4_4:21390942-21390961 Msa0674220:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG - chr4_4:21391049-21391068 Msa0674220:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG - chr4_4:21391192-21391211 Msa0674220:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG + chr4_4:21391359-21391378 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG + chr4_4:21391683-21391702 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG - chr4_4:21391716-21391735 Msa0674220:intron 30.0%
TAATAAATCCATGTGACAAG+CGG + chr4_4:21391762-21391781 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG - chr4_4:21391849-21391868 Msa0674220:intron 30.0%
AAGTCATACGATGTCAATTT+CGG - chr4_4:21391882-21391901 Msa0674220:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG - chr4_4:21392101-21392120 Msa0674220:CDS 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG - chr4_4:21392192-21392211 Msa0674220:intron 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG - chr4_4:21392213-21392232 Msa0674220:intron 30.0%
ATTATAGTTTACCTTCAGCA+AGG + chr4_4:21392241-21392260 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG - chr4_4:21392357-21392376 Msa0674220:CDS 30.0%
! TTATGTATTCGATTTGCCAA+AGG - chr4_4:21392476-21392495 Msa0674220:five_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG + chr4_4:21387277-21387296 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG - chr4_4:21387449-21387468 Msa0674220:three_prime_UTR 35.0%
CCACTTCATGTTATGATTTC+CGG - chr4_4:21387580-21387599 Msa0674220:CDS 35.0%
!! AACTTACTTTCTTGGTGATG+AGG + chr4_4:21387639-21387658 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG + chr4_4:21387802-21387821 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG + chr4_4:21388014-21388033 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG + chr4_4:21388107-21388126 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG - chr4_4:21388107-21388126 Msa0674220:intron 35.0%
GGTCGATAAATGACAACAAT+GGG - chr4_4:21388108-21388127 Msa0674220:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG - chr4_4:21388388-21388407 Msa0674220:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG + chr4_4:21388570-21388589 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG - chr4_4:21388628-21388647 Msa0674220:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG - chr4_4:21388650-21388669 Msa0674220:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG + chr4_4:21388659-21388678 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG - chr4_4:21388658-21388677 Msa0674220:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG - chr4_4:21388659-21388678 Msa0674220:intron 35.0%
TTAGACATAAACTTTGGACC+TGG - chr4_4:21388787-21388806 Msa0674220:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG + chr4_4:21388830-21388849 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG - chr4_4:21388833-21388852 Msa0674220:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG - chr4_4:21388969-21388988 Msa0674220:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG - chr4_4:21389032-21389051 Msa0674220:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG - chr4_4:21389055-21389074 Msa0674220:intron 35.0%
TGCGAAAGAATATATGGAGA+AGG - chr4_4:21389061-21389080 Msa0674220:intron 35.0%
GCGAAAGAATATATGGAGAA+GGG - chr4_4:21389062-21389081 Msa0674220:intron 35.0%
CCATGACAACTATTTCATCA+GGG + chr4_4:21389097-21389116 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG + chr4_4:21389098-21389117 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG - chr4_4:21389103-21389122 Msa0674220:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG - chr4_4:21389104-21389123 Msa0674220:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG - chr4_4:21389693-21389712 Msa0674220:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG - chr4_4:21389694-21389713 Msa0674220:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG + chr4_4:21389763-21389782 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG + chr4_4:21389816-21389835 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG + chr4_4:21389817-21389836 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG + chr4_4:21389818-21389837 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG + chr4_4:21389838-21389857 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG + chr4_4:21390386-21390405 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG + chr4_4:21390457-21390476 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG + chr4_4:21390830-21390849 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG + chr4_4:21390831-21390850 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG - chr4_4:21390917-21390936 Msa0674220:intron 35.0%
TACTGATAGACATGGTTGAT+TGG + chr4_4:21391100-21391119 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG + chr4_4:21391108-21391127 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG - chr4_4:21391116-21391135 Msa0674220:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG - chr4_4:21391207-21391226 Msa0674220:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG - chr4_4:21391250-21391269 Msa0674220:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG - chr4_4:21391306-21391325 Msa0674220:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG - chr4_4:21391469-21391488 Msa0674220:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG - chr4_4:21391474-21391493 Msa0674220:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG - chr4_4:21391497-21391516 Msa0674220:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG + chr4_4:21391816-21391835 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG - chr4_4:21391883-21391902 Msa0674220:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG - chr4_4:21392079-21392098 Msa0674220:intron 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG - chr4_4:21392129-21392148 Msa0674220:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG - chr4_4:21392151-21392170 Msa0674220:intron 35.0%
CCGGAAATCATAACATGAAG+TGG + chr4_4:21387583-21387602 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG - chr4_4:21387685-21387704 Msa0674220:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG - chr4_4:21387696-21387715 Msa0674220:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG + chr4_4:21387790-21387809 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG + chr4_4:21388015-21388034 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG - chr4_4:21388021-21388040 Msa0674220:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG - chr4_4:21388039-21388058 Msa0674220:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG - chr4_4:21388076-21388095 Msa0674220:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG + chr4_4:21388104-21388123 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG + chr4_4:21388179-21388198 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG + chr4_4:21388180-21388199 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG - chr4_4:21388249-21388268 Msa0674220:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG - chr4_4:21388250-21388269 Msa0674220:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG + chr4_4:21388417-21388436 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG + chr4_4:21388418-21388437 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG - chr4_4:21388417-21388436 Msa0674220:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG - chr4_4:21388418-21388437 Msa0674220:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG - chr4_4:21388419-21388438 Msa0674220:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG + chr4_4:21388566-21388585 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG + chr4_4:21388603-21388622 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG + chr4_4:21388606-21388625 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG + chr4_4:21388648-21388667 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG - chr4_4:21388660-21388679 Msa0674220:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG - chr4_4:21388723-21388742 Msa0674220:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG + chr4_4:21388736-21388755 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG - chr4_4:21388738-21388757 Msa0674220:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG + chr4_4:21388751-21388770 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG + chr4_4:21388822-21388841 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG + chr4_4:21388848-21388867 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG - chr4_4:21388974-21388993 Msa0674220:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG - chr4_4:21389003-21389022 Msa0674220:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG - chr4_4:21389004-21389023 Msa0674220:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG + chr4_4:21389042-21389061 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG - chr4_4:21389070-21389089 Msa0674220:intron 40.0%
CCCTGATGAAATAGTTGTCA+TGG - chr4_4:21389094-21389113 Msa0674220:intron 40.0%
TCATGGTATGGTAGGGTAAA+TGG - chr4_4:21389111-21389130 Msa0674220:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG - chr4_4:21389222-21389241 Msa0674220:intron 40.0%
CAACCATTCTCTACAGAATC+TGG + chr4_4:21389228-21389247 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG - chr4_4:21389226-21389245 Msa0674220:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG - chr4_4:21389233-21389252 Msa0674220:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG - chr4_4:21389283-21389302 Msa0674220:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG - chr4_4:21389327-21389346 Msa0674220:CDS 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG + chr4_4:21389529-21389548 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG - chr4_4:21389528-21389547 Msa0674220:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG + chr4_4:21389542-21389561 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG - chr4_4:21389573-21389592 Msa0674220:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG + chr4_4:21389734-21389753 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG + chr4_4:21389764-21389783 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG + chr4_4:21389969-21389988 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG + chr4_4:21389970-21389989 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG - chr4_4:21389976-21389995 Msa0674220:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG - chr4_4:21389977-21389996 Msa0674220:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG + chr4_4:21390047-21390066 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG - chr4_4:21390101-21390120 Msa0674220:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG - chr4_4:21390334-21390353 Msa0674220:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG - chr4_4:21390347-21390366 Msa0674220:intron 40.0%
AGGAGATTAGATCCTGTTAC+TGG - chr4_4:21390371-21390390 Msa0674220:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG - chr4_4:21390372-21390391 Msa0674220:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG - chr4_4:21390421-21390440 Msa0674220:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG - chr4_4:21390426-21390445 Msa0674220:CDS 40.0%
GAACACCCATCATCAAAATG+TGG - chr4_4:21390663-21390682 Msa0674220:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG + chr4_4:21390671-21390690 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG - chr4_4:21390776-21390795 Msa0674220:intron 40.0%
TACACGTGTCAACATGAGTT+GGG - chr4_4:21390777-21390796 Msa0674220:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG + chr4_4:21390805-21390824 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG + chr4_4:21390810-21390829 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG + chr4_4:21390823-21390842 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG + chr4_4:21390982-21391001 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG + chr4_4:21390986-21391005 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG - chr4_4:21390989-21391008 Msa0674220:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG - chr4_4:21391249-21391268 Msa0674220:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG - chr4_4:21391447-21391466 Msa0674220:intron 40.0%
TTTCCTCACACCAATCATCA+GGG + chr4_4:21391460-21391479 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG + chr4_4:21391461-21391480 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG - chr4_4:21391468-21391487 Msa0674220:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG - chr4_4:21391473-21391492 Msa0674220:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG - chr4_4:21391485-21391504 Msa0674220:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG - chr4_4:21391802-21391821 Msa0674220:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG - chr4_4:21391803-21391822 Msa0674220:intron 40.0%
GTCATACGATGTCAATTTCG+GGG - chr4_4:21391884-21391903 Msa0674220:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG + chr4_4:21392093-21392112 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG - chr4_4:21392381-21392400 Msa0674220:CDS 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG - chr4_4:21392386-21392405 Msa0674220:CDS 40.0%
CATATGAACCACCAGTAACA+GGG + chr4_4:21392417-21392436 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG - chr4_4:21387540-21387559 Msa0674220:CDS 45.0%
TGAGTTCCTTTACCAGAAGC+AGG + chr4_4:21387610-21387629 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG + chr4_4:21387697-21387716 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG + chr4_4:21387734-21387753 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG - chr4_4:21388139-21388158 Msa0674220:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG - chr4_4:21388140-21388159 Msa0674220:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG - chr4_4:21388251-21388270 Msa0674220:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG - chr4_4:21388281-21388300 Msa0674220:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG - chr4_4:21388322-21388341 Msa0674220:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG - chr4_4:21388406-21388425 Msa0674220:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG + chr4_4:21388421-21388440 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG + chr4_4:21388643-21388662 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG + chr4_4:21388714-21388733 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG + chr4_4:21388715-21388734 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG + chr4_4:21388752-21388771 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG - chr4_4:21388796-21388815 Msa0674220:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG - chr4_4:21389007-21389026 Msa0674220:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG - chr4_4:21389020-21389039 Msa0674220:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG - chr4_4:21389237-21389256 Msa0674220:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG - chr4_4:21389260-21389279 Msa0674220:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG - chr4_4:21389275-21389294 Msa0674220:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG - chr4_4:21389282-21389301 Msa0674220:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG - chr4_4:21389704-21389723 Msa0674220:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG + chr4_4:21389759-21389778 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG + chr4_4:21389775-21389794 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG + chr4_4:21389776-21389795 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG + chr4_4:21389780-21389799 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG + chr4_4:21389786-21389805 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG + chr4_4:21389789-21389808 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG + chr4_4:21389800-21389819 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG - chr4_4:21389975-21389994 Msa0674220:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG + chr4_4:21389979-21389998 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG - chr4_4:21390092-21390111 Msa0674220:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG - chr4_4:21390207-21390226 Msa0674220:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG + chr4_4:21390218-21390237 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG - chr4_4:21390351-21390370 Msa0674220:intron 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG + chr4_4:21390422-21390441 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG + chr4_4:21390425-21390444 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG - chr4_4:21390553-21390572 Msa0674220:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG - chr4_4:21390554-21390573 Msa0674220:intron 45.0%
CACCCATCATCAAAATGTGG+AGG - chr4_4:21390666-21390685 Msa0674220:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG + chr4_4:21390672-21390691 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG - chr4_4:21390947-21390966 Msa0674220:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG - chr4_4:21390975-21390994 Msa0674220:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG + chr4_4:21391133-21391152 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG + chr4_4:21391147-21391166 None:intergenic 45.0%
CATGGGTATGCACACTGTAA+GGG - chr4_4:21391170-21391189 Msa0674220:intron 45.0%
GGTAAACACACACACATCAG+TGG - chr4_4:21391271-21391290 Msa0674220:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG - chr4_4:21391454-21391473 Msa0674220:intron 45.0%
CATGCACTCGAAACACTATC+TGG - chr4_4:21391925-21391944 Msa0674220:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG + chr4_4:21391997-21392016 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG - chr4_4:21392227-21392246 Msa0674220:intron 45.0%
GCATATGAACCACCAGTAAC+AGG + chr4_4:21392418-21392437 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG - chr4_4:21390066-21390085 Msa0674220:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG + chr4_4:21387442-21387461 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG + chr4_4:21387602-21387621 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG - chr4_4:21387702-21387721 Msa0674220:intron 50.0%
TTAGACATGTGTCCGACACC+GGG + chr4_4:21387733-21387752 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG + chr4_4:21387784-21387803 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG + chr4_4:21388151-21388170 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG + chr4_4:21388152-21388171 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG - chr4_4:21388151-21388170 Msa0674220:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG - chr4_4:21388152-21388171 Msa0674220:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG - chr4_4:21388327-21388346 Msa0674220:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG - chr4_4:21388328-21388347 Msa0674220:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG - chr4_4:21388335-21388354 Msa0674220:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG - chr4_4:21388349-21388368 Msa0674220:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG - chr4_4:21388405-21388424 Msa0674220:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG - chr4_4:21388407-21388426 Msa0674220:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG - chr4_4:21388408-21388427 Msa0674220:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG - chr4_4:21388596-21388615 Msa0674220:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG - chr4_4:21388754-21388773 Msa0674220:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG - chr4_4:21388757-21388776 Msa0674220:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG + chr4_4:21388815-21388834 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG - chr4_4:21389247-21389266 Msa0674220:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG + chr4_4:21389267-21389286 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG + chr4_4:21389268-21389287 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG + chr4_4:21389754-21389773 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG + chr4_4:21389760-21389779 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG + chr4_4:21389801-21389820 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG + chr4_4:21389808-21389827 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG + chr4_4:21389989-21390008 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG - chr4_4:21391503-21391522 Msa0674220:intron 50.0%
AGATGACACCGCTTGTCACA+TGG - chr4_4:21391751-21391770 Msa0674220:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG - chr4_4:21392403-21392422 Msa0674220:CDS 50.0%
ATGAACCACCAGTAACAGGG+AGG + chr4_4:21392414-21392433 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG + chr4_4:21387429-21387448 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG - chr4_4:21387549-21387568 Msa0674220:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG - chr4_4:21387595-21387614 Msa0674220:CDS 55.0%
GGTGCACCTGCTTCTGGTAA+AGG - chr4_4:21387601-21387620 Msa0674220:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG - chr4_4:21387712-21387731 Msa0674220:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG - chr4_4:21387718-21387737 Msa0674220:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG - chr4_4:21388124-21388143 Msa0674220:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG + chr4_4:21388134-21388153 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG + chr4_4:21388135-21388154 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG - chr4_4:21388146-21388165 Msa0674220:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG - chr4_4:21388150-21388169 Msa0674220:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG - chr4_4:21388255-21388274 Msa0674220:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG + chr4_4:21388329-21388348 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG - chr4_4:21388326-21388345 Msa0674220:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG - chr4_4:21388340-21388359 Msa0674220:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG - chr4_4:21388344-21388363 Msa0674220:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG - chr4_4:21388348-21388367 Msa0674220:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG - chr4_4:21388353-21388372 Msa0674220:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG - chr4_4:21388354-21388373 Msa0674220:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG - chr4_4:21388363-21388382 Msa0674220:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG + chr4_4:21388638-21388657 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG + chr4_4:21388668-21388687 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG - chr4_4:21388761-21388780 Msa0674220:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG + chr4_4:21388808-21388827 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG - chr4_4:21388990-21389009 Msa0674220:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG + chr4_4:21389985-21390004 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG - chr4_4:21391587-21391606 Msa0674220:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG - chr4_4:21392406-21392425 Msa0674220:CDS 55.0%
ACCGGGACATGCCTAATCCG+AGG + chr4_4:21387716-21387735 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG - chr4_4:21388087-21388106 Msa0674220:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG + chr4_4:21388096-21388115 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG - chr4_4:21388145-21388164 Msa0674220:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG - chr4_4:21388164-21388183 Msa0674220:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG - chr4_4:21388259-21388278 Msa0674220:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG - chr4_4:21388260-21388279 Msa0674220:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG - chr4_4:21388270-21388289 Msa0674220:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG - chr4_4:21388362-21388381 Msa0674220:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG + chr4_4:21391226-21391245 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG - chr4_4:21391227-21391246 Msa0674220:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG - chr4_4:21391588-21391607 Msa0674220:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG - chr4_4:21387552-21387571 Msa0674220:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG - chr4_4:21388261-21388280 Msa0674220:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG - chr4_4:21387555-21387574 Msa0674220:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG + chr4_4:21388264-21388283 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 21387170 21392534 21387170 ID=Msa0674220;Name=Msa0674220
chr4_4 mRNA 21387170 21392534 21387170 ID=Msa0674220-mRNA-1;Parent=Msa0674220;Name=Msa0674220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=76|0.71|0.75|0.87|1|1|8|353|297
chr4_4 exon 21387170 21387627 21387170 ID=Msa0674220-mRNA-1:exon:6084;Parent=Msa0674220-mRNA-1
chr4_4 exon 21388981 21389055 21388981 ID=Msa0674220-mRNA-1:exon:6083;Parent=Msa0674220-mRNA-1
chr4_4 exon 21389223 21389369 21389223 ID=Msa0674220-mRNA-1:exon:6082;Parent=Msa0674220-mRNA-1
chr4_4 exon 21390369 21390503 21390369 ID=Msa0674220-mRNA-1:exon:6081;Parent=Msa0674220-mRNA-1
chr4_4 exon 21390589 21390717 21390589 ID=Msa0674220-mRNA-1:exon:6080;Parent=Msa0674220-mRNA-1
chr4_4 exon 21391654 21391661 21391654 ID=Msa0674220-mRNA-1:exon:6079;Parent=Msa0674220-mRNA-1
chr4_4 exon 21392088 21392157 21392088 ID=Msa0674220-mRNA-1:exon:6078;Parent=Msa0674220-mRNA-1
chr4_4 exon 21392234 21392534 21392234 ID=Msa0674220-mRNA-1:exon:6077;Parent=Msa0674220-mRNA-1
chr4_4 five_prime_UTR 21392459 21392534 21392459 ID=Msa0674220-mRNA-1:five_prime_utr;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21392234 21392458 21392234 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21392088 21392157 21392088 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21391654 21391661 21391654 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21390589 21390717 21390589 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21390369 21390503 21390369 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21389223 21389369 21389223 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21388981 21389055 21388981 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 CDS 21387523 21387627 21387523 ID=Msa0674220-mRNA-1:cds;Parent=Msa0674220-mRNA-1
chr4_4 three_prime_UTR 21387170 21387522 21387170 ID=Msa0674220-mRNA-1:three_prime_utr;Parent=Msa0674220-mRNA-1
Gene Sequence

>Msa0674220

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATGTTATGATTTCCGGTGCACCTGCTTCTGGCACCCAATACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0674220

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHVMISGAPASGTQYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*