Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878080 | XP_013451503.1 | 96.055 | 507 | 20 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878080 | sp|Q6DBG8|ARAD1_ARATH | 39.096 | 376 | 215 | 7 | 113 | 484 | 60 | 425 | 1.92e-81 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878080 | A0A072U827 | 96.055 | 507 | 20 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1009 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0685020 | Msa0878080 | 0.804786 | 1.827207e-49 | -8.615850e-47 |
| Msa0878080 | Msa0943860 | 0.846640 | 1.912654e-59 | -8.615850e-47 |
| Msa0878080 | Msa1149910 | 0.814301 | 1.651940e-51 | -8.615850e-47 |
| Msa0878080 | Msa1192360 | 0.811855 | 5.680874e-51 | -8.615850e-47 |
| Msa0878080 | Msa1288070 | 0.810277 | 1.248884e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878080 | MtrunA17_Chr6g0460631 | 96.055 | 507 | 20 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1009 |
| Msa0878080 | MtrunA17_Chr7g0254391 | 66.148 | 514 | 157 | 5 | 3 | 503 | 1 | 510 | 0.0 | 669 |
| Msa0878080 | MtrunA17_Chr3g0092341 | 54.141 | 495 | 194 | 9 | 16 | 485 | 4 | 490 | 0.0 | 521 |
| Msa0878080 | MtrunA17_Chr8g0377331 | 41.379 | 377 | 210 | 4 | 113 | 485 | 49 | 418 | 1.14e-103 | 317 |
| Msa0878080 | MtrunA17_Chr3g0122631 | 41.316 | 380 | 207 | 4 | 109 | 481 | 46 | 416 | 6.72e-102 | 312 |
| Msa0878080 | MtrunA17_Chr4g0043801 | 39.740 | 385 | 212 | 7 | 113 | 487 | 92 | 466 | 1.84e-84 | 269 |
| Msa0878080 | MtrunA17_Chr4g0039811 | 35.958 | 381 | 216 | 8 | 113 | 481 | 112 | 476 | 2.67e-64 | 217 |
| Msa0878080 | MtrunA17_Chr1g0200871 | 33.721 | 430 | 223 | 15 | 113 | 489 | 55 | 475 | 1.96e-61 | 209 |
| Msa0878080 | MtrunA17_Chr4g0064471 | 28.146 | 302 | 178 | 10 | 183 | 465 | 180 | 461 | 9.53e-21 | 95.1 |
| Msa0878080 | MtrunA17_Chr1g0179651 | 28.328 | 293 | 186 | 9 | 183 | 465 | 52 | 330 | 7.85e-20 | 90.9 |
| Msa0878080 | MtrunA17_Chr3g0120131 | 28.620 | 297 | 185 | 9 | 180 | 465 | 193 | 473 | 2.02e-19 | 90.9 |
| Msa0878080 | MtrunA17_Chr3g0119721 | 27.723 | 303 | 192 | 9 | 174 | 465 | 49 | 335 | 3.03e-19 | 89.0 |
| Msa0878080 | MtrunA17_Chr8g0385651 | 23.810 | 378 | 230 | 10 | 113 | 470 | 50 | 389 | 1.47e-18 | 87.8 |
| Msa0878080 | MtrunA17_Chr3g0140141 | 29.352 | 293 | 171 | 12 | 189 | 465 | 271 | 543 | 2.81e-18 | 87.8 |
| Msa0878080 | MtrunA17_Chr4g0064461 | 28.378 | 296 | 193 | 11 | 179 | 465 | 171 | 456 | 4.32e-18 | 87.0 |
| Msa0878080 | MtrunA17_Chr2g0320251 | 24.495 | 396 | 229 | 16 | 113 | 484 | 89 | 438 | 1.11e-17 | 85.5 |
| Msa0878080 | MtrunA17_Chr8g0385671 | 22.933 | 375 | 237 | 8 | 113 | 470 | 50 | 389 | 1.12e-17 | 85.1 |
| Msa0878080 | MtrunA17_Chr1g0146181 | 25.939 | 293 | 191 | 7 | 184 | 465 | 301 | 578 | 1.41e-17 | 85.9 |
| Msa0878080 | MtrunA17_Chr1g0197381 | 26.821 | 302 | 194 | 10 | 184 | 475 | 266 | 550 | 1.79e-16 | 82.4 |
| Msa0878080 | MtrunA17_Chr3g0140131 | 25.249 | 301 | 197 | 8 | 177 | 465 | 301 | 585 | 2.13e-16 | 82.0 |
| Msa0878080 | MtrunA17_Chr7g0265381 | 25.312 | 320 | 199 | 10 | 165 | 465 | 67 | 365 | 5.77e-16 | 79.7 |
| Msa0878080 | MtrunA17_Chr4g0064411 | 28.151 | 238 | 154 | 7 | 235 | 465 | 226 | 453 | 7.53e-16 | 80.1 |
| Msa0878080 | MtrunA17_Chr7g0265451 | 26.557 | 305 | 175 | 12 | 183 | 465 | 229 | 506 | 2.02e-15 | 79.0 |
| Msa0878080 | MtrunA17_Chr3g0131051 | 25.879 | 313 | 209 | 9 | 163 | 465 | 183 | 482 | 3.19e-15 | 78.2 |
| Msa0878080 | MtrunA17_Chr7g0265461 | 28.980 | 245 | 141 | 8 | 235 | 465 | 164 | 389 | 4.48e-15 | 77.0 |
| Msa0878080 | MtrunA17_Chr5g0411991 | 23.693 | 287 | 193 | 7 | 183 | 461 | 134 | 402 | 7.55e-15 | 76.6 |
| Msa0878080 | MtrunA17_Chr1g0159421 | 27.063 | 303 | 191 | 10 | 183 | 469 | 124 | 412 | 1.69e-14 | 75.5 |
| Msa0878080 | MtrunA17_Chr4g0028201 | 24.205 | 409 | 241 | 16 | 86 | 469 | 84 | 448 | 3.36e-14 | 74.7 |
| Msa0878080 | MtrunA17_Chr7g0253441 | 25.418 | 299 | 168 | 12 | 184 | 461 | 204 | 468 | 1.20e-13 | 73.2 |
| Msa0878080 | MtrunA17_Chr4g0055991 | 28.571 | 266 | 156 | 12 | 218 | 465 | 278 | 527 | 1.39e-13 | 73.2 |
| Msa0878080 | MtrunA17_Chr3g0137491 | 26.621 | 293 | 192 | 10 | 183 | 465 | 103 | 382 | 1.48e-13 | 72.4 |
| Msa0878080 | MtrunA17_Chr8g0390121 | 25.263 | 285 | 181 | 11 | 184 | 453 | 323 | 590 | 2.20e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878080 | AT3G45400.1 | 59.369 | 507 | 170 | 4 | 1 | 503 | 1 | 475 | 0.0 | 602 |
| Msa0878080 | AT3G03650.1 | 56.930 | 469 | 183 | 8 | 32 | 483 | 30 | 496 | 0.0 | 533 |
| Msa0878080 | AT1G74680.1 | 61.082 | 388 | 144 | 4 | 103 | 485 | 67 | 452 | 8.76e-175 | 500 |
| Msa0878080 | AT1G67410.1 | 44.149 | 376 | 197 | 4 | 113 | 481 | 53 | 422 | 2.51e-106 | 324 |
| Msa0878080 | AT2G35100.1 | 39.096 | 376 | 215 | 7 | 113 | 484 | 60 | 425 | 1.95e-82 | 263 |
| Msa0878080 | AT5G44930.2 | 38.587 | 368 | 211 | 8 | 114 | 481 | 66 | 418 | 1.82e-76 | 247 |
| Msa0878080 | AT5G44930.1 | 38.587 | 368 | 211 | 8 | 114 | 481 | 66 | 418 | 1.82e-76 | 247 |
| Msa0878080 | AT5G44930.3 | 38.602 | 329 | 190 | 6 | 114 | 442 | 66 | 382 | 2.22e-67 | 222 |
| Msa0878080 | AT5G16890.1 | 36.132 | 393 | 219 | 9 | 111 | 489 | 116 | 490 | 1.82e-66 | 223 |
| Msa0878080 | AT1G34270.1 | 35.036 | 411 | 221 | 11 | 113 | 481 | 57 | 463 | 7.57e-63 | 213 |
| Msa0878080 | AT1G67410.2 | 37.607 | 234 | 133 | 4 | 113 | 339 | 53 | 280 | 7.43e-45 | 160 |
| Msa0878080 | AT5G33290.1 | 26.923 | 312 | 187 | 12 | 174 | 465 | 199 | 489 | 3.48e-19 | 90.9 |
| Msa0878080 | AT5G61840.1 | 23.822 | 382 | 225 | 10 | 113 | 470 | 49 | 388 | 6.99e-19 | 89.4 |
| Msa0878080 | AT3G07620.1 | 29.352 | 293 | 182 | 11 | 183 | 465 | 172 | 449 | 2.37e-18 | 88.2 |
| Msa0878080 | AT3G42180.4 | 26.786 | 280 | 177 | 9 | 193 | 465 | 72 | 330 | 1.43e-17 | 84.3 |
| Msa0878080 | AT1G27440.1 | 23.016 | 378 | 233 | 9 | 113 | 470 | 46 | 385 | 2.05e-17 | 84.7 |
| Msa0878080 | AT3G42180.1 | 26.786 | 280 | 177 | 9 | 193 | 465 | 201 | 459 | 2.66e-17 | 84.7 |
| Msa0878080 | AT4G38040.1 | 25.175 | 286 | 190 | 8 | 183 | 461 | 144 | 412 | 4.67e-17 | 84.0 |
| Msa0878080 | AT4G32790.1 | 25.249 | 301 | 198 | 9 | 177 | 465 | 300 | 585 | 9.97e-16 | 80.5 |
| Msa0878080 | AT4G32790.3 | 25.249 | 301 | 198 | 9 | 177 | 465 | 300 | 585 | 9.97e-16 | 80.5 |
| Msa0878080 | AT4G32790.2 | 25.249 | 301 | 198 | 9 | 177 | 465 | 300 | 585 | 9.97e-16 | 80.5 |
| Msa0878080 | AT4G16745.1 | 25.763 | 295 | 193 | 8 | 185 | 465 | 241 | 523 | 1.20e-15 | 80.1 |
| Msa0878080 | AT2G28110.1 | 25.381 | 394 | 232 | 16 | 113 | 485 | 94 | 446 | 1.29e-15 | 79.7 |
| Msa0878080 | AT5G03795.1 | 27.632 | 304 | 179 | 11 | 180 | 465 | 226 | 506 | 2.02e-15 | 79.3 |
| Msa0878080 | AT5G37000.1 | 27.715 | 267 | 162 | 9 | 221 | 469 | 298 | 551 | 2.36e-15 | 79.3 |
| Msa0878080 | AT5G11130.2 | 28.992 | 238 | 150 | 7 | 235 | 465 | 98 | 323 | 2.56e-15 | 77.8 |
| Msa0878080 | AT5G25820.1 | 26.971 | 241 | 154 | 6 | 235 | 465 | 416 | 644 | 4.88e-15 | 78.6 |
| Msa0878080 | AT5G11130.1 | 28.992 | 238 | 150 | 7 | 235 | 465 | 242 | 467 | 7.89e-15 | 77.4 |
| Msa0878080 | AT5G20260.1 | 29.508 | 244 | 142 | 10 | 235 | 465 | 98 | 324 | 9.86e-15 | 75.9 |
| Msa0878080 | AT5G20260.3 | 29.508 | 244 | 142 | 10 | 235 | 465 | 125 | 351 | 1.28e-14 | 75.9 |
| Msa0878080 | AT5G20260.2 | 29.508 | 244 | 142 | 10 | 235 | 465 | 230 | 456 | 1.39e-14 | 76.6 |
| Msa0878080 | AT4G16745.2 | 26.449 | 276 | 177 | 8 | 185 | 446 | 241 | 504 | 6.16e-14 | 74.7 |
| Msa0878080 | AT5G25310.1 | 26.797 | 306 | 197 | 9 | 172 | 465 | 180 | 470 | 1.65e-13 | 73.2 |
| Msa0878080 | AT5G19670.1 | 24.422 | 303 | 184 | 9 | 184 | 465 | 321 | 599 | 2.04e-13 | 73.2 |
| Msa0878080 | AT5G19670.2 | 24.422 | 303 | 184 | 9 | 184 | 465 | 321 | 599 | 2.04e-13 | 73.2 |
| Msa0878080 | AT4G38040.2 | 24.254 | 268 | 179 | 9 | 183 | 443 | 144 | 394 | 6.18e-13 | 70.9 |
| Msa0878080 | AT5G11610.1 | 24.832 | 298 | 186 | 10 | 184 | 465 | 262 | 537 | 7.32e-12 | 68.2 |
| Msa0878080 | AT1G21480.1 | 24.342 | 304 | 198 | 9 | 183 | 469 | 139 | 427 | 9.36e-12 | 67.8 |
Find 80 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGAAATTGAAGTTAAAT+AGG | 0.177171 | 6_1:-18495541 | Msa0878080:CDS |
| GTATGAAACTTTGAATCTTC+TGG | 0.195675 | 6_1:+18497215 | None:intergenic |
| TACAACATAGTATAGAATTT+TGG | 0.207420 | 6_1:-18496932 | Msa0878080:CDS |
| ACATTTATACTCTCAGATTT+TGG | 0.212093 | 6_1:-18496606 | Msa0878080:CDS |
| CTATACTCCTGATGAAATTT+AGG | 0.214205 | 6_1:+18495693 | None:intergenic |
| TTACCATCAGAGTTTCATTT+TGG | 0.223200 | 6_1:-18497038 | Msa0878080:CDS |
| CTTGCATCCAACATACTATT+AGG | 0.256110 | 6_1:+18496648 | None:intergenic |
| TCGAACTAGCGATGCTATTA+AGG | 0.256798 | 6_1:-18495726 | Msa0878080:CDS |
| TTCTTTGTTATCTTCTCATT+TGG | 0.263780 | 6_1:+18496765 | None:intergenic |
| GGTATTGTTGTTCTAACATT+AGG | 0.309308 | 6_1:+18496978 | None:intergenic |
| TTCAGTTCTTTCTCTATACT+TGG | 0.318775 | 6_1:+18495494 | None:intergenic |
| ACAGCATCACCTTCCTTAGA+TGG | 0.346358 | 6_1:+18495602 | None:intergenic |
| GAAGTGATTAAATGCTTATA+AGG | 0.348576 | 6_1:+18496537 | None:intergenic |
| TTGGTCTATGTTTCGAGTTT+CGG | 0.354511 | 6_1:+18496784 | None:intergenic |
| CTTAGGAGCATTCGGAATTT+CGG | 0.354651 | 6_1:+18496887 | None:intergenic |
| TATGAAACTTTGAATCTTCT+GGG | 0.377971 | 6_1:+18497216 | None:intergenic |
| TATGAAATTGAAGTTAAATA+GGG | 0.385793 | 6_1:-18495540 | Msa0878080:CDS |
| TTAAATATCGAGTCCTCATT+CGG | 0.387589 | 6_1:-18497185 | Msa0878080:CDS |
| CTAAATTTCATCAGGAGTAT+AGG | 0.391282 | 6_1:-18495692 | Msa0878080:CDS |
| TCAACATTAGCTATACTTGA+AGG | 0.409087 | 6_1:+18496576 | None:intergenic |
| AAATTCTTAGGTACAGGTAT+TGG | 0.416860 | 6_1:+18495470 | None:intergenic |
| GAATGGCACGAATATAATAT+CGG | 0.431118 | 6_1:+18496827 | None:intergenic |
| CGTATCACAGTCTTCGCCTT+AGG | 0.432352 | 6_1:+18496870 | None:intergenic |
| AATTGAAGTTAAATAGGGTT+AGG | 0.442808 | 6_1:-18495535 | Msa0878080:CDS |
| CGAAATTCCGAATGCTCCTA+AGG | 0.448572 | 6_1:-18496886 | Msa0878080:CDS |
| AACCGAGTGGAAATAGTGTT+TGG | 0.449001 | 6_1:-18497001 | Msa0878080:CDS |
| GTGTGTCGCCTGCTATGTTT+AGG | 0.449262 | 6_1:+18495867 | None:intergenic |
| ACTATCTCCTAAATTTCATC+AGG | 0.449684 | 6_1:-18495700 | Msa0878080:CDS |
| GTGATGCTGTACAAATGATT+TGG | 0.451308 | 6_1:-18495589 | Msa0878080:CDS |
| GTCTTCGCCTTAGGAGCATT+CGG | 0.456156 | 6_1:+18496879 | None:intergenic |
| TTTAACTTCAATTTCATAGC+AGG | 0.456578 | 6_1:+18495545 | None:intergenic |
| TAAATATCGAGTCCTCATTC+GGG | 0.457752 | 6_1:-18497184 | Msa0878080:CDS |
| TGTTGTAAATTCAAGCCTCC+AGG | 0.477479 | 6_1:+18496948 | None:intergenic |
| CAATTATGTTCTTCATGTCA+TGG | 0.477648 | 6_1:-18497316 | Msa0878080:CDS |
| AATGAAATGAGGACGATTCG+TGG | 0.486616 | 6_1:+18497277 | None:intergenic |
| AGTTCTTTCTCTATACTTGG+AGG | 0.487883 | 6_1:+18495497 | None:intergenic |
| TATTGCTCGGTTCCCGAATG+AGG | 0.488734 | 6_1:+18497172 | None:intergenic |
| GTTCTTTCTCTATACTTGGA+GGG | 0.490726 | 6_1:+18495498 | None:intergenic |
| TTCTTTCTCTATACTTGGAG+GGG | 0.497834 | 6_1:+18495499 | None:intergenic |
| GAGGAATGGAAAAGGTCAAA+GGG | 0.498112 | 6_1:-18496699 | Msa0878080:CDS |
| GGAGTATAGGCAAAGAAGAA+TGG | 0.500869 | 6_1:-18495679 | Msa0878080:CDS |
| TGAAATTGAGCTACCGTTCG+AGG | 0.506011 | 6_1:-18495783 | Msa0878080:CDS |
| ACAACATTGTTGTATTTCCA+AGG | 0.518744 | 6_1:-18496480 | Msa0878080:CDS |
| CACTATCAACGAGTATTGCT+CGG | 0.518876 | 6_1:+18497159 | None:intergenic |
| TCGAACAAGCGGTTTGATGA+AGG | 0.518960 | 6_1:+18495845 | None:intergenic |
| TCTGAGAGTATAAATGTAGC+TGG | 0.520368 | 6_1:+18496612 | None:intergenic |
| GAAACAAACAAGCCGAAAGA+TGG | 0.522940 | 6_1:-18497116 | Msa0878080:CDS |
| TAGCAATTGCGTCGAACAAG+CGG | 0.524957 | 6_1:+18495834 | None:intergenic |
| GTGAATAGGGAGGTTATGTA+AGG | 0.525720 | 6_1:-18496003 | Msa0878080:intron |
| TTCAAGCCTCCAGGGTAACC+AGG | 0.526624 | 6_1:+18496957 | None:intergenic |
| GGAAATACAACAATGTTGTA+CGG | 0.527530 | 6_1:+18496484 | None:intergenic |
| TGTTGTACGGCTATCAAAGT+TGG | 0.529330 | 6_1:+18496497 | None:intergenic |
| TGAAGTTAAATAGGGTTAGG+AGG | 0.534262 | 6_1:-18495532 | Msa0878080:CDS |
| ATGTGACATCTCAAGAGGAA+TGG | 0.540807 | 6_1:-18496713 | Msa0878080:CDS |
| ATTTCATCACTGATGATCAC+AGG | 0.545065 | 6_1:+18495800 | None:intergenic |
| AAACTTTGAATCTTCTGGGG+TGG | 0.547632 | 6_1:+18497220 | None:intergenic |
| TCGAACAAATACGCAGAACT+CGG | 0.548065 | 6_1:+18495745 | None:intergenic |
| CATCTCAAGAGGAATGGAAA+AGG | 0.555424 | 6_1:-18496707 | Msa0878080:CDS |
| AGAGGAATGGAAAAGGTCAA+AGG | 0.558310 | 6_1:-18496700 | Msa0878080:CDS |
| TAGCTCAACGACGAAAAGAA+TGG | 0.564196 | 6_1:+18496810 | None:intergenic |
| CATCCAACATACTATTAGGA+TGG | 0.577350 | 6_1:+18496652 | None:intergenic |
| AGTCCAAAATGAAACTCTGA+TGG | 0.589756 | 6_1:+18497035 | None:intergenic |
| AATGTGGAACAAGTTGAAAG+AGG | 0.589824 | 6_1:-18495651 | Msa0878080:CDS |
| GTTGTAAATTCAAGCCTCCA+GGG | 0.591676 | 6_1:+18496949 | None:intergenic |
| ACAAACAAGCCGAAAGATGG+TGG | 0.593642 | 6_1:-18497113 | Msa0878080:CDS |
| AAGAAGAATGGACAAGAATG+TGG | 0.598103 | 6_1:-18495667 | Msa0878080:CDS |
| ACAACAATACCTGGTTACCC+TGG | 0.598796 | 6_1:-18496966 | Msa0878080:CDS |
| GGAATCAAGAAAGCAACTGA+AGG | 0.610010 | 6_1:-18495911 | Msa0878080:CDS |
| GGCCAAACACTATTTCCACT+CGG | 0.612068 | 6_1:+18496999 | None:intergenic |
| GAAGTATGTGACATCTCAAG+AGG | 0.613659 | 6_1:-18496718 | Msa0878080:CDS |
| AAGTTGTGATCAATGAAATG+AGG | 0.621730 | 6_1:+18497266 | None:intergenic |
| ACACCATCCTAATAGTATGT+TGG | 0.622015 | 6_1:-18496655 | Msa0878080:CDS |
| AATGTTAGAACAACAATACC+TGG | 0.629334 | 6_1:-18496975 | Msa0878080:CDS |
| ATGAAACTTTGAATCTTCTG+GGG | 0.630944 | 6_1:+18497217 | None:intergenic |
| TTTCATCACTGATGATCACA+GGG | 0.666242 | 6_1:+18495801 | None:intergenic |
| TGGATGCAAGAATGAAATTG+TGG | 0.671506 | 6_1:-18496635 | Msa0878080:CDS |
| TAGTCGAGTACATCCTCGAA+CGG | 0.674403 | 6_1:+18495770 | None:intergenic |
| ACAATACCTGGTTACCCTGG+AGG | 0.692386 | 6_1:-18496963 | Msa0878080:CDS |
| GAGAACTAAAGTTATGACAA+TGG | 0.696360 | 6_1:-18497408 | None:intergenic |
| CTATTGGATTGGAAACCGAG+TGG | 0.708544 | 6_1:-18497014 | Msa0878080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATACAAAGATATTA+AGG | + | chr6_1:18496427-18496446 | None:intergenic | 10.0% |
| !! | TATTAAGTAAATATGAATAT+AGG | - | chr6_1:18496577-18496596 | Msa0878080:CDS | 10.0% |
| !! | ATTAAGTAAATATGAATATA+GGG | - | chr6_1:18496578-18496597 | Msa0878080:CDS | 10.0% |
| !! | AAAAAAATACAAAGATATTA+AGG | + | chr6_1:18496427-18496446 | None:intergenic | 10.0% |
| !! | TATTAAGTAAATATGAATAT+AGG | - | chr6_1:18496577-18496596 | Msa0878080:CDS | 10.0% |
| !! | ATTAAGTAAATATGAATATA+GGG | - | chr6_1:18496578-18496597 | Msa0878080:CDS | 10.0% |
| !!! | TTTAAATTTTTTGCACTTAT+TGG | - | chr6_1:18496798-18496817 | Msa0878080:CDS | 15.0% |
| !!! | TTATTCTTTGAAAAATGAAA+AGG | - | chr6_1:18496877-18496896 | Msa0878080:CDS | 15.0% |
| !! | TATGAAATTGAAGTTAAATA+GGG | - | chr6_1:18497306-18497325 | Msa0878080:CDS | 15.0% |
| !!! | TTTAAATTTTTTGCACTTAT+TGG | - | chr6_1:18496798-18496817 | Msa0878080:CDS | 15.0% |
| !!! | TTATTCTTTGAAAAATGAAA+AGG | - | chr6_1:18496877-18496896 | Msa0878080:CDS | 15.0% |
| !! | TATGAAATTGAAGTTAAATA+GGG | - | chr6_1:18497306-18497325 | Msa0878080:CDS | 15.0% |
| !!! | TACAACATAGTATAGAATTT+TGG | - | chr6_1:18495914-18495933 | Msa0878080:CDS | 20.0% |
| !!! | TTTGTATTTTTTTTTCTCTC+TGG | - | chr6_1:18496434-18496453 | Msa0878080:intron | 20.0% |
| !! | CTATGAAATTGAAGTTAAAT+AGG | - | chr6_1:18497305-18497324 | Msa0878080:CDS | 20.0% |
| !!! | TACAACATAGTATAGAATTT+TGG | - | chr6_1:18495914-18495933 | Msa0878080:CDS | 20.0% |
| !!! | TTTGTATTTTTTTTTCTCTC+TGG | - | chr6_1:18496434-18496453 | Msa0878080:intron | 20.0% |
| !! | CTATGAAATTGAAGTTAAAT+AGG | - | chr6_1:18497305-18497324 | Msa0878080:CDS | 20.0% |
| ! | TATGAAACTTTGAATCTTCT+GGG | + | chr6_1:18495633-18495652 | None:intergenic | 25.0% |
| !! | TTCTTTGTTATCTTCTCATT+TGG | + | chr6_1:18496084-18496103 | None:intergenic | 25.0% |
| !! | ACATTTATACTCTCAGATTT+TGG | - | chr6_1:18496240-18496259 | Msa0878080:intron | 25.0% |
| ! | GAAGTGATTAAATGCTTATA+AGG | + | chr6_1:18496312-18496331 | None:intergenic | 25.0% |
| ! | TACAAAAGAATGTCTTTCTT+TGG | - | chr6_1:18496541-18496560 | Msa0878080:CDS | 25.0% |
| ! | ACAAAAGAATGTCTTTCTTT+GGG | - | chr6_1:18496542-18496561 | Msa0878080:CDS | 25.0% |
| !! | TTTTCTTCTTCTTGTGAATA+GGG | - | chr6_1:18496830-18496849 | Msa0878080:CDS | 25.0% |
| !! | AAGGATGTACATTTTTCATT+TGG | - | chr6_1:18496896-18496915 | Msa0878080:CDS | 25.0% |
| !! | TGAGTATAATTTTCCATCTA+AGG | - | chr6_1:18497231-18497250 | Msa0878080:CDS | 25.0% |
| !! | TATAATTTTCCATCTAAGGA+AGG | - | chr6_1:18497235-18497254 | Msa0878080:CDS | 25.0% |
| !! | TTTAACTTCAATTTCATAGC+AGG | + | chr6_1:18497304-18497323 | None:intergenic | 25.0% |
| ! | AATTGAAGTTAAATAGGGTT+AGG | - | chr6_1:18497311-18497330 | Msa0878080:CDS | 25.0% |
| ! | TCTTTATCCCAAAAATTCTT+AGG | + | chr6_1:18497391-18497410 | None:intergenic | 25.0% |
| ! | TATGAAACTTTGAATCTTCT+GGG | + | chr6_1:18495633-18495652 | None:intergenic | 25.0% |
| !! | TTCTTTGTTATCTTCTCATT+TGG | + | chr6_1:18496084-18496103 | None:intergenic | 25.0% |
| !! | ACATTTATACTCTCAGATTT+TGG | - | chr6_1:18496240-18496259 | Msa0878080:intron | 25.0% |
| ! | GAAGTGATTAAATGCTTATA+AGG | + | chr6_1:18496312-18496331 | None:intergenic | 25.0% |
| ! | TACAAAAGAATGTCTTTCTT+TGG | - | chr6_1:18496541-18496560 | Msa0878080:CDS | 25.0% |
| ! | ACAAAAGAATGTCTTTCTTT+GGG | - | chr6_1:18496542-18496561 | Msa0878080:CDS | 25.0% |
| !! | TTTTCTTCTTCTTGTGAATA+GGG | - | chr6_1:18496830-18496849 | Msa0878080:CDS | 25.0% |
| !! | AAGGATGTACATTTTTCATT+TGG | - | chr6_1:18496896-18496915 | Msa0878080:CDS | 25.0% |
| !! | TGAGTATAATTTTCCATCTA+AGG | - | chr6_1:18497231-18497250 | Msa0878080:CDS | 25.0% |
| !! | TATAATTTTCCATCTAAGGA+AGG | - | chr6_1:18497235-18497254 | Msa0878080:CDS | 25.0% |
| !! | TTTAACTTCAATTTCATAGC+AGG | + | chr6_1:18497304-18497323 | None:intergenic | 25.0% |
| ! | AATTGAAGTTAAATAGGGTT+AGG | - | chr6_1:18497311-18497330 | Msa0878080:CDS | 25.0% |
| ! | TCTTTATCCCAAAAATTCTT+AGG | + | chr6_1:18497391-18497410 | None:intergenic | 25.0% |
| CAATTATGTTCTTCATGTCA+TGG | - | chr6_1:18495530-18495549 | Msa0878080:CDS | 30.0% | |
| AAGTTGTGATCAATGAAATG+AGG | + | chr6_1:18495583-18495602 | None:intergenic | 30.0% | |
| !! | GTGGAAAAAAGCTTTGAATT+TGG | + | chr6_1:18495610-18495629 | None:intergenic | 30.0% |
| ATGAAACTTTGAATCTTCTG+GGG | + | chr6_1:18495632-18495651 | None:intergenic | 30.0% | |
| GTATGAAACTTTGAATCTTC+TGG | + | chr6_1:18495634-18495653 | None:intergenic | 30.0% | |
| TTAAATATCGAGTCCTCATT+CGG | - | chr6_1:18495661-18495680 | Msa0878080:CDS | 30.0% | |
| ! | TTACCATCAGAGTTTCATTT+TGG | - | chr6_1:18495808-18495827 | Msa0878080:CDS | 30.0% |
| ! | AGAGTTTCATTTTGGACTAT+TGG | - | chr6_1:18495816-18495835 | Msa0878080:CDS | 30.0% |
| ! | TTCATTTTGGACTATTGGAT+TGG | - | chr6_1:18495821-18495840 | Msa0878080:CDS | 30.0% |
| ! | GGTATTGTTGTTCTAACATT+AGG | + | chr6_1:18495871-18495890 | None:intergenic | 30.0% |
| AATGTTAGAACAACAATACC+TGG | - | chr6_1:18495871-18495890 | Msa0878080:CDS | 30.0% | |
| GAATGGCACGAATATAATAT+CGG | + | chr6_1:18496022-18496041 | None:intergenic | 30.0% | |
| TCAACATTAGCTATACTTGA+AGG | + | chr6_1:18496273-18496292 | None:intergenic | 30.0% | |
| GGAAATACAACAATGTTGTA+CGG | + | chr6_1:18496365-18496384 | None:intergenic | 30.0% | |
| ACAACATTGTTGTATTTCCA+AGG | - | chr6_1:18496366-18496385 | Msa0878080:intron | 30.0% | |
| !!! | TCTCTGGTTCTTTATTCTTT+TGG | - | chr6_1:18496450-18496469 | Msa0878080:intron | 30.0% |
| GTTGTTTATCCAAATGTGAA+TGG | - | chr6_1:18496727-18496746 | Msa0878080:CDS | 30.0% | |
| ATAAGAAAGCCATTCACATT+TGG | + | chr6_1:18496739-18496758 | None:intergenic | 30.0% | |
| ! | GTTTTCTTCTTCTTGTGAAT+AGG | - | chr6_1:18496829-18496848 | Msa0878080:CDS | 30.0% |
| !! | TTTGGAAGCATTCAAAAAGA+TGG | - | chr6_1:18496914-18496933 | Msa0878080:CDS | 30.0% |
| ! | AAATTTTGCCTAAACATAGC+AGG | - | chr6_1:18496971-18496990 | Msa0878080:CDS | 30.0% |
| ACTATCTCCTAAATTTCATC+AGG | - | chr6_1:18497146-18497165 | Msa0878080:CDS | 30.0% | |
| CTATACTCCTGATGAAATTT+AGG | + | chr6_1:18497156-18497175 | None:intergenic | 30.0% | |
| ! | CTAAATTTCATCAGGAGTAT+AGG | - | chr6_1:18497154-18497173 | Msa0878080:CDS | 30.0% |
| TTCAGTTCTTTCTCTATACT+TGG | + | chr6_1:18497355-18497374 | None:intergenic | 30.0% | |
| AAATTCTTAGGTACAGGTAT+TGG | + | chr6_1:18497379-18497398 | None:intergenic | 30.0% | |
| ! | TACCTGTACCTAAGAATTTT+TGG | - | chr6_1:18497380-18497399 | Msa0878080:CDS | 30.0% |
| ! | ACCTGTACCTAAGAATTTTT+GGG | - | chr6_1:18497381-18497400 | Msa0878080:CDS | 30.0% |
| CAATTATGTTCTTCATGTCA+TGG | - | chr6_1:18495530-18495549 | Msa0878080:CDS | 30.0% | |
| AAGTTGTGATCAATGAAATG+AGG | + | chr6_1:18495583-18495602 | None:intergenic | 30.0% | |
| !! | GTGGAAAAAAGCTTTGAATT+TGG | + | chr6_1:18495610-18495629 | None:intergenic | 30.0% |
| ATGAAACTTTGAATCTTCTG+GGG | + | chr6_1:18495632-18495651 | None:intergenic | 30.0% | |
| GTATGAAACTTTGAATCTTC+TGG | + | chr6_1:18495634-18495653 | None:intergenic | 30.0% | |
| TTAAATATCGAGTCCTCATT+CGG | - | chr6_1:18495661-18495680 | Msa0878080:CDS | 30.0% | |
| ! | TTACCATCAGAGTTTCATTT+TGG | - | chr6_1:18495808-18495827 | Msa0878080:CDS | 30.0% |
| ! | AGAGTTTCATTTTGGACTAT+TGG | - | chr6_1:18495816-18495835 | Msa0878080:CDS | 30.0% |
| ! | TTCATTTTGGACTATTGGAT+TGG | - | chr6_1:18495821-18495840 | Msa0878080:CDS | 30.0% |
| ! | GGTATTGTTGTTCTAACATT+AGG | + | chr6_1:18495871-18495890 | None:intergenic | 30.0% |
| AATGTTAGAACAACAATACC+TGG | - | chr6_1:18495871-18495890 | Msa0878080:CDS | 30.0% | |
| GAATGGCACGAATATAATAT+CGG | + | chr6_1:18496022-18496041 | None:intergenic | 30.0% | |
| TCAACATTAGCTATACTTGA+AGG | + | chr6_1:18496273-18496292 | None:intergenic | 30.0% | |
| GGAAATACAACAATGTTGTA+CGG | + | chr6_1:18496365-18496384 | None:intergenic | 30.0% | |
| ACAACATTGTTGTATTTCCA+AGG | - | chr6_1:18496366-18496385 | Msa0878080:intron | 30.0% | |
| !!! | TCTCTGGTTCTTTATTCTTT+TGG | - | chr6_1:18496450-18496469 | Msa0878080:intron | 30.0% |
| GTTGTTTATCCAAATGTGAA+TGG | - | chr6_1:18496727-18496746 | Msa0878080:CDS | 30.0% | |
| ATAAGAAAGCCATTCACATT+TGG | + | chr6_1:18496739-18496758 | None:intergenic | 30.0% | |
| ! | GTTTTCTTCTTCTTGTGAAT+AGG | - | chr6_1:18496829-18496848 | Msa0878080:CDS | 30.0% |
| !! | TTTGGAAGCATTCAAAAAGA+TGG | - | chr6_1:18496914-18496933 | Msa0878080:CDS | 30.0% |
| ! | AAATTTTGCCTAAACATAGC+AGG | - | chr6_1:18496971-18496990 | Msa0878080:CDS | 30.0% |
| ACTATCTCCTAAATTTCATC+AGG | - | chr6_1:18497146-18497165 | Msa0878080:CDS | 30.0% | |
| CTATACTCCTGATGAAATTT+AGG | + | chr6_1:18497156-18497175 | None:intergenic | 30.0% | |
| ! | CTAAATTTCATCAGGAGTAT+AGG | - | chr6_1:18497154-18497173 | Msa0878080:CDS | 30.0% |
| TTCAGTTCTTTCTCTATACT+TGG | + | chr6_1:18497355-18497374 | None:intergenic | 30.0% | |
| AAATTCTTAGGTACAGGTAT+TGG | + | chr6_1:18497379-18497398 | None:intergenic | 30.0% | |
| ! | TACCTGTACCTAAGAATTTT+TGG | - | chr6_1:18497380-18497399 | Msa0878080:CDS | 30.0% |
| ! | ACCTGTACCTAAGAATTTTT+GGG | - | chr6_1:18497381-18497400 | Msa0878080:CDS | 30.0% |
| TAAATATCGAGTCCTCATTC+GGG | - | chr6_1:18495662-18495681 | Msa0878080:CDS | 35.0% | |
| ! | CTACATTTTCCACCATCTTT+CGG | + | chr6_1:18495745-18495764 | None:intergenic | 35.0% |
| AGTCCAAAATGAAACTCTGA+TGG | + | chr6_1:18495814-18495833 | None:intergenic | 35.0% | |
| !! | TTGGTCTATGTTTCGAGTTT+CGG | + | chr6_1:18496065-18496084 | None:intergenic | 35.0% |
| ACACCATCCTAATAGTATGT+TGG | - | chr6_1:18496191-18496210 | Msa0878080:intron | 35.0% | |
| CATCCAACATACTATTAGGA+TGG | + | chr6_1:18496197-18496216 | None:intergenic | 35.0% | |
| CTTGCATCCAACATACTATT+AGG | + | chr6_1:18496201-18496220 | None:intergenic | 35.0% | |
| TGGATGCAAGAATGAAATTG+TGG | - | chr6_1:18496211-18496230 | Msa0878080:intron | 35.0% | |
| ! | TCTGAGAGTATAAATGTAGC+TGG | + | chr6_1:18496237-18496256 | None:intergenic | 35.0% |
| ! | CTTTTCTATAGATTGCTCCT+TGG | + | chr6_1:18496386-18496405 | None:intergenic | 35.0% |
| TTTCATCACTGATGATCACA+GGG | + | chr6_1:18497048-18497067 | None:intergenic | 35.0% | |
| ATTTCATCACTGATGATCAC+AGG | + | chr6_1:18497049-18497068 | None:intergenic | 35.0% | |
| AAGAAGAATGGACAAGAATG+TGG | - | chr6_1:18497179-18497198 | Msa0878080:CDS | 35.0% | |
| ! | AATGTGGAACAAGTTGAAAG+AGG | - | chr6_1:18497195-18497214 | Msa0878080:CDS | 35.0% |
| GTGATGCTGTACAAATGATT+TGG | - | chr6_1:18497257-18497276 | Msa0878080:CDS | 35.0% | |
| TGAAGTTAAATAGGGTTAGG+AGG | - | chr6_1:18497314-18497333 | Msa0878080:CDS | 35.0% | |
| TTCTTTCTCTATACTTGGAG+GGG | + | chr6_1:18497350-18497369 | None:intergenic | 35.0% | |
| GTTCTTTCTCTATACTTGGA+GGG | + | chr6_1:18497351-18497370 | None:intergenic | 35.0% | |
| AGTTCTTTCTCTATACTTGG+AGG | + | chr6_1:18497352-18497371 | None:intergenic | 35.0% | |
| TCCCAAAAATTCTTAGGTAC+AGG | + | chr6_1:18497385-18497404 | None:intergenic | 35.0% | |
| TAAATATCGAGTCCTCATTC+GGG | - | chr6_1:18495662-18495681 | Msa0878080:CDS | 35.0% | |
| ! | CTACATTTTCCACCATCTTT+CGG | + | chr6_1:18495745-18495764 | None:intergenic | 35.0% |
| AGTCCAAAATGAAACTCTGA+TGG | + | chr6_1:18495814-18495833 | None:intergenic | 35.0% | |
| !! | TTGGTCTATGTTTCGAGTTT+CGG | + | chr6_1:18496065-18496084 | None:intergenic | 35.0% |
| ACACCATCCTAATAGTATGT+TGG | - | chr6_1:18496191-18496210 | Msa0878080:intron | 35.0% | |
| CATCCAACATACTATTAGGA+TGG | + | chr6_1:18496197-18496216 | None:intergenic | 35.0% | |
| CTTGCATCCAACATACTATT+AGG | + | chr6_1:18496201-18496220 | None:intergenic | 35.0% | |
| TGGATGCAAGAATGAAATTG+TGG | - | chr6_1:18496211-18496230 | Msa0878080:intron | 35.0% | |
| ! | TCTGAGAGTATAAATGTAGC+TGG | + | chr6_1:18496237-18496256 | None:intergenic | 35.0% |
| ! | CTTTTCTATAGATTGCTCCT+TGG | + | chr6_1:18496386-18496405 | None:intergenic | 35.0% |
| TTTCATCACTGATGATCACA+GGG | + | chr6_1:18497048-18497067 | None:intergenic | 35.0% | |
| ATTTCATCACTGATGATCAC+AGG | + | chr6_1:18497049-18497068 | None:intergenic | 35.0% | |
| AAGAAGAATGGACAAGAATG+TGG | - | chr6_1:18497179-18497198 | Msa0878080:CDS | 35.0% | |
| ! | AATGTGGAACAAGTTGAAAG+AGG | - | chr6_1:18497195-18497214 | Msa0878080:CDS | 35.0% |
| GTGATGCTGTACAAATGATT+TGG | - | chr6_1:18497257-18497276 | Msa0878080:CDS | 35.0% | |
| TGAAGTTAAATAGGGTTAGG+AGG | - | chr6_1:18497314-18497333 | Msa0878080:CDS | 35.0% | |
| TTCTTTCTCTATACTTGGAG+GGG | + | chr6_1:18497350-18497369 | None:intergenic | 35.0% | |
| GTTCTTTCTCTATACTTGGA+GGG | + | chr6_1:18497351-18497370 | None:intergenic | 35.0% | |
| AGTTCTTTCTCTATACTTGG+AGG | + | chr6_1:18497352-18497371 | None:intergenic | 35.0% | |
| TCCCAAAAATTCTTAGGTAC+AGG | + | chr6_1:18497385-18497404 | None:intergenic | 35.0% | |
| AATGAAATGAGGACGATTCG+TGG | + | chr6_1:18495572-18495591 | None:intergenic | 40.0% | |
| ! | AAACTTTGAATCTTCTGGGG+TGG | + | chr6_1:18495629-18495648 | None:intergenic | 40.0% |
| ! | CACTATCAACGAGTATTGCT+CGG | + | chr6_1:18495690-18495709 | None:intergenic | 40.0% |
| GAAACAAACAAGCCGAAAGA+TGG | - | chr6_1:18495730-18495749 | Msa0878080:CDS | 40.0% | |
| AACCGAGTGGAAATAGTGTT+TGG | - | chr6_1:18495845-18495864 | Msa0878080:CDS | 40.0% | |
| GTTGTAAATTCAAGCCTCCA+GGG | + | chr6_1:18495900-18495919 | None:intergenic | 40.0% | |
| TGTTGTAAATTCAAGCCTCC+AGG | + | chr6_1:18495901-18495920 | None:intergenic | 40.0% | |
| !! | CTTAGGAGCATTCGGAATTT+CGG | + | chr6_1:18495962-18495981 | None:intergenic | 40.0% |
| TAGCTCAACGACGAAAAGAA+TGG | + | chr6_1:18496039-18496058 | None:intergenic | 40.0% | |
| GAAGTATGTGACATCTCAAG+AGG | - | chr6_1:18496128-18496147 | Msa0878080:intron | 40.0% | |
| ATGTGACATCTCAAGAGGAA+TGG | - | chr6_1:18496133-18496152 | Msa0878080:intron | 40.0% | |
| CATCTCAAGAGGAATGGAAA+AGG | - | chr6_1:18496139-18496158 | Msa0878080:intron | 40.0% | |
| AGAGGAATGGAAAAGGTCAA+AGG | - | chr6_1:18496146-18496165 | Msa0878080:intron | 40.0% | |
| GAGGAATGGAAAAGGTCAAA+GGG | - | chr6_1:18496147-18496166 | Msa0878080:intron | 40.0% | |
| TGTTGTACGGCTATCAAAGT+TGG | + | chr6_1:18496352-18496371 | None:intergenic | 40.0% | |
| CTGAACTTGTGAGACTGTTT+AGG | - | chr6_1:18496618-18496637 | Msa0878080:CDS | 40.0% | |
| TCTTCTTCTTGTGAATAGGG+AGG | - | chr6_1:18496833-18496852 | Msa0878080:CDS | 40.0% | |
| GTGAATAGGGAGGTTATGTA+AGG | - | chr6_1:18496843-18496862 | Msa0878080:CDS | 40.0% | |
| GGAATCAAGAAAGCAACTGA+AGG | - | chr6_1:18496935-18496954 | Msa0878080:CDS | 40.0% | |
| TCGAACAAATACGCAGAACT+CGG | + | chr6_1:18497104-18497123 | None:intergenic | 40.0% | |
| TCGAACTAGCGATGCTATTA+AGG | - | chr6_1:18497120-18497139 | Msa0878080:CDS | 40.0% | |
| GGAGTATAGGCAAAGAAGAA+TGG | - | chr6_1:18497167-18497186 | Msa0878080:CDS | 40.0% | |
| AATGAAATGAGGACGATTCG+TGG | + | chr6_1:18495572-18495591 | None:intergenic | 40.0% | |
| ! | AAACTTTGAATCTTCTGGGG+TGG | + | chr6_1:18495629-18495648 | None:intergenic | 40.0% |
| ! | CACTATCAACGAGTATTGCT+CGG | + | chr6_1:18495690-18495709 | None:intergenic | 40.0% |
| GAAACAAACAAGCCGAAAGA+TGG | - | chr6_1:18495730-18495749 | Msa0878080:CDS | 40.0% | |
| AACCGAGTGGAAATAGTGTT+TGG | - | chr6_1:18495845-18495864 | Msa0878080:CDS | 40.0% | |
| GTTGTAAATTCAAGCCTCCA+GGG | + | chr6_1:18495900-18495919 | None:intergenic | 40.0% | |
| TGTTGTAAATTCAAGCCTCC+AGG | + | chr6_1:18495901-18495920 | None:intergenic | 40.0% | |
| !! | CTTAGGAGCATTCGGAATTT+CGG | + | chr6_1:18495962-18495981 | None:intergenic | 40.0% |
| TAGCTCAACGACGAAAAGAA+TGG | + | chr6_1:18496039-18496058 | None:intergenic | 40.0% | |
| GAAGTATGTGACATCTCAAG+AGG | - | chr6_1:18496128-18496147 | Msa0878080:intron | 40.0% | |
| ATGTGACATCTCAAGAGGAA+TGG | - | chr6_1:18496133-18496152 | Msa0878080:intron | 40.0% | |
| CATCTCAAGAGGAATGGAAA+AGG | - | chr6_1:18496139-18496158 | Msa0878080:intron | 40.0% | |
| AGAGGAATGGAAAAGGTCAA+AGG | - | chr6_1:18496146-18496165 | Msa0878080:intron | 40.0% | |
| GAGGAATGGAAAAGGTCAAA+GGG | - | chr6_1:18496147-18496166 | Msa0878080:intron | 40.0% | |
| TGTTGTACGGCTATCAAAGT+TGG | + | chr6_1:18496352-18496371 | None:intergenic | 40.0% | |
| CTGAACTTGTGAGACTGTTT+AGG | - | chr6_1:18496618-18496637 | Msa0878080:CDS | 40.0% | |
| TCTTCTTCTTGTGAATAGGG+AGG | - | chr6_1:18496833-18496852 | Msa0878080:CDS | 40.0% | |
| GTGAATAGGGAGGTTATGTA+AGG | - | chr6_1:18496843-18496862 | Msa0878080:CDS | 40.0% | |
| GGAATCAAGAAAGCAACTGA+AGG | - | chr6_1:18496935-18496954 | Msa0878080:CDS | 40.0% | |
| TCGAACAAATACGCAGAACT+CGG | + | chr6_1:18497104-18497123 | None:intergenic | 40.0% | |
| TCGAACTAGCGATGCTATTA+AGG | - | chr6_1:18497120-18497139 | Msa0878080:CDS | 40.0% | |
| GGAGTATAGGCAAAGAAGAA+TGG | - | chr6_1:18497167-18497186 | Msa0878080:CDS | 40.0% | |
| ACAAACAAGCCGAAAGATGG+TGG | - | chr6_1:18495733-18495752 | Msa0878080:CDS | 45.0% | |
| ! | CTATTGGATTGGAAACCGAG+TGG | - | chr6_1:18495832-18495851 | Msa0878080:CDS | 45.0% |
| GGCCAAACACTATTTCCACT+CGG | + | chr6_1:18495850-18495869 | None:intergenic | 45.0% | |
| ACAACAATACCTGGTTACCC+TGG | - | chr6_1:18495880-18495899 | Msa0878080:CDS | 45.0% | |
| CGAAATTCCGAATGCTCCTA+AGG | - | chr6_1:18495960-18495979 | Msa0878080:CDS | 45.0% | |
| TCGAACAAGCGGTTTGATGA+AGG | + | chr6_1:18497004-18497023 | None:intergenic | 45.0% | |
| TAGCAATTGCGTCGAACAAG+CGG | + | chr6_1:18497015-18497034 | None:intergenic | 45.0% | |
| TGAAATTGAGCTACCGTTCG+AGG | - | chr6_1:18497063-18497082 | Msa0878080:CDS | 45.0% | |
| TAGTCGAGTACATCCTCGAA+CGG | + | chr6_1:18497079-18497098 | None:intergenic | 45.0% | |
| ACAGCATCACCTTCCTTAGA+TGG | + | chr6_1:18497247-18497266 | None:intergenic | 45.0% | |
| ACAAACAAGCCGAAAGATGG+TGG | - | chr6_1:18495733-18495752 | Msa0878080:CDS | 45.0% | |
| ! | CTATTGGATTGGAAACCGAG+TGG | - | chr6_1:18495832-18495851 | Msa0878080:CDS | 45.0% |
| GGCCAAACACTATTTCCACT+CGG | + | chr6_1:18495850-18495869 | None:intergenic | 45.0% | |
| ACAACAATACCTGGTTACCC+TGG | - | chr6_1:18495880-18495899 | Msa0878080:CDS | 45.0% | |
| CGAAATTCCGAATGCTCCTA+AGG | - | chr6_1:18495960-18495979 | Msa0878080:CDS | 45.0% | |
| TCGAACAAGCGGTTTGATGA+AGG | + | chr6_1:18497004-18497023 | None:intergenic | 45.0% | |
| TAGCAATTGCGTCGAACAAG+CGG | + | chr6_1:18497015-18497034 | None:intergenic | 45.0% | |
| TGAAATTGAGCTACCGTTCG+AGG | - | chr6_1:18497063-18497082 | Msa0878080:CDS | 45.0% | |
| TAGTCGAGTACATCCTCGAA+CGG | + | chr6_1:18497079-18497098 | None:intergenic | 45.0% | |
| ACAGCATCACCTTCCTTAGA+TGG | + | chr6_1:18497247-18497266 | None:intergenic | 45.0% | |
| TATTGCTCGGTTCCCGAATG+AGG | + | chr6_1:18495677-18495696 | None:intergenic | 50.0% | |
| ACAATACCTGGTTACCCTGG+AGG | - | chr6_1:18495883-18495902 | Msa0878080:CDS | 50.0% | |
| !! | GTCTTCGCCTTAGGAGCATT+CGG | + | chr6_1:18495970-18495989 | None:intergenic | 50.0% |
| CGTATCACAGTCTTCGCCTT+AGG | + | chr6_1:18495979-18495998 | None:intergenic | 50.0% | |
| GTGTGTCGCCTGCTATGTTT+AGG | + | chr6_1:18496982-18497001 | None:intergenic | 50.0% | |
| TATTGCTCGGTTCCCGAATG+AGG | + | chr6_1:18495677-18495696 | None:intergenic | 50.0% | |
| ACAATACCTGGTTACCCTGG+AGG | - | chr6_1:18495883-18495902 | Msa0878080:CDS | 50.0% | |
| !! | GTCTTCGCCTTAGGAGCATT+CGG | + | chr6_1:18495970-18495989 | None:intergenic | 50.0% |
| CGTATCACAGTCTTCGCCTT+AGG | + | chr6_1:18495979-18495998 | None:intergenic | 50.0% | |
| GTGTGTCGCCTGCTATGTTT+AGG | + | chr6_1:18496982-18497001 | None:intergenic | 50.0% | |
| TTCAAGCCTCCAGGGTAACC+AGG | + | chr6_1:18495892-18495911 | None:intergenic | 55.0% | |
| TTCAAGCCTCCAGGGTAACC+AGG | + | chr6_1:18495892-18495911 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 18495451 | 18497417 | 18495451 | ID=Msa0878080;Name=Msa0878080 |
| chr6_1 | mRNA | 18495451 | 18497417 | 18495451 | ID=Msa0878080-mRNA-1;Parent=Msa0878080;Name=Msa0878080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|507 |
| chr6_1 | exon | 18496461 | 18497417 | 18496461 | ID=Msa0878080-mRNA-1:exon:5054;Parent=Msa0878080-mRNA-1 |
| chr6_1 | exon | 18495451 | 18496017 | 18495451 | ID=Msa0878080-mRNA-1:exon:5053;Parent=Msa0878080-mRNA-1 |
| chr6_1 | CDS | 18496461 | 18497417 | 18496461 | ID=Msa0878080-mRNA-1:cds;Parent=Msa0878080-mRNA-1 |
| chr6_1 | CDS | 18495451 | 18496017 | 18495451 | ID=Msa0878080-mRNA-1:cds;Parent=Msa0878080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
