Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878150 | XP_013451508.1 | 96.026 | 302 | 9 | 2 | 1 | 301 | 1 | 300 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878150 | sp|Q6X7J3|WOX11_ARATH | 51.000 | 300 | 111 | 7 | 3 | 299 | 2 | 268 | 1.16e-70 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878150 | A0A072U832 | 96.026 | 302 | 9 | 2 | 1 | 301 | 1 | 300 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0878150 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0878150 | Msa1412250 | 0.999910 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878150 | MtrunA17_Chr6g0460691 | 96.026 | 302 | 9 | 2 | 1 | 301 | 1 | 300 | 0.0 | 587 |
| Msa0878150 | MtrunA17_Chr7g0254251 | 46.519 | 316 | 110 | 9 | 1 | 301 | 1 | 272 | 1.35e-72 | 224 |
| Msa0878150 | MtrunA17_Chr7g0223471 | 62.857 | 70 | 26 | 0 | 24 | 93 | 39 | 108 | 5.55e-28 | 111 |
| Msa0878150 | MtrunA17_Chr2g0283141 | 62.500 | 72 | 27 | 0 | 24 | 95 | 47 | 118 | 1.56e-27 | 111 |
| Msa0878150 | MtrunA17_Chr8g0392991 | 43.333 | 90 | 50 | 1 | 11 | 99 | 75 | 164 | 4.91e-17 | 80.5 |
| Msa0878150 | MtrunA17_Chr4g0043891 | 35.000 | 80 | 52 | 0 | 31 | 110 | 7 | 86 | 1.37e-14 | 72.0 |
| Msa0878150 | MtrunA17_Chr1g0212511 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 3.88e-14 | 70.9 |
| Msa0878150 | MtrunA17_Chr3g0144021 | 47.692 | 65 | 34 | 0 | 28 | 92 | 78 | 142 | 1.60e-13 | 68.6 |
| Msa0878150 | MtrunA17_Chr5g0436661 | 37.500 | 64 | 40 | 0 | 32 | 95 | 33 | 96 | 3.42e-12 | 63.9 |
| Msa0878150 | MtrunA17_Chr5g0405351 | 40.625 | 64 | 37 | 1 | 31 | 93 | 29 | 92 | 3.75e-12 | 65.9 |
| Msa0878150 | MtrunA17_Chr4g0031341 | 40.299 | 67 | 40 | 0 | 32 | 98 | 25 | 91 | 4.04e-12 | 65.1 |
| Msa0878150 | MtrunA17_Chr7g0238431 | 40.625 | 64 | 38 | 0 | 31 | 94 | 7 | 70 | 7.67e-12 | 63.5 |
| Msa0878150 | MtrunA17_Chr7g0222981 | 41.538 | 65 | 38 | 0 | 29 | 93 | 65 | 129 | 8.65e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878150 | AT3G03660.1 | 51.000 | 300 | 111 | 7 | 3 | 299 | 2 | 268 | 1.18e-71 | 222 |
| Msa0878150 | AT5G17810.1 | 48.322 | 298 | 109 | 7 | 13 | 298 | 3 | 267 | 3.78e-71 | 221 |
| Msa0878150 | AT5G17810.2 | 48.322 | 298 | 109 | 7 | 13 | 298 | 3 | 267 | 3.78e-71 | 221 |
| Msa0878150 | AT5G17810.3 | 49.474 | 285 | 99 | 6 | 26 | 298 | 15 | 266 | 4.22e-71 | 221 |
| Msa0878150 | AT3G03660.4 | 51.186 | 295 | 110 | 6 | 3 | 295 | 2 | 264 | 9.63e-70 | 218 |
| Msa0878150 | AT3G03660.2 | 50.162 | 309 | 129 | 6 | 3 | 299 | 2 | 297 | 2.81e-69 | 217 |
| Msa0878150 | AT3G03660.3 | 50.492 | 305 | 126 | 6 | 3 | 295 | 2 | 293 | 2.94e-67 | 213 |
| Msa0878150 | AT2G33880.1 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.35e-27 | 110 |
| Msa0878150 | AT2G33880.2 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.56e-27 | 110 |
| Msa0878150 | AT5G45980.1 | 57.534 | 73 | 31 | 0 | 30 | 102 | 53 | 125 | 7.81e-26 | 105 |
| Msa0878150 | AT4G35550.1 | 47.692 | 65 | 34 | 0 | 28 | 92 | 95 | 159 | 2.44e-14 | 72.0 |
| Msa0878150 | AT3G18010.1 | 40.000 | 80 | 47 | 1 | 29 | 107 | 73 | 152 | 6.48e-14 | 71.6 |
| Msa0878150 | AT5G59340.1 | 39.706 | 68 | 41 | 0 | 31 | 98 | 13 | 80 | 7.45e-13 | 67.8 |
| Msa0878150 | AT1G20700.2 | 42.254 | 71 | 41 | 0 | 28 | 98 | 29 | 99 | 1.15e-12 | 65.1 |
| Msa0878150 | AT1G20700.1 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.89e-12 | 65.1 |
| Msa0878150 | AT1G20700.3 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.91e-12 | 65.1 |
| Msa0878150 | AT2G17950.1 | 42.188 | 64 | 36 | 1 | 31 | 93 | 37 | 100 | 3.22e-12 | 66.2 |
| Msa0878150 | AT2G28610.1 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 6.01e-12 | 64.7 |
| Msa0878150 | AT3G11260.1 | 34.884 | 86 | 47 | 1 | 32 | 117 | 24 | 100 | 6.63e-12 | 63.5 |
| Msa0878150 | AT1G46480.2 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 3.36e-11 | 61.6 |
| Msa0878150 | AT5G05770.1 | 37.500 | 64 | 40 | 0 | 32 | 95 | 29 | 92 | 6.53e-11 | 59.3 |
Find 67 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTTCTTGAGAAATT+TGG | 0.100600 | 6_1:-18709188 | Msa0878150:CDS |
| ATTCTCACGGTTTCATCTTT+TGG | 0.207436 | 6_1:+18709212 | None:intergenic |
| GACCATTCCACTATTGAAAA+TGG | 0.216187 | 6_1:+18709241 | None:intergenic |
| ATAAGGATTTGTTCAGGTTT+TGG | 0.291953 | 6_1:+18709272 | None:intergenic |
| TGAAAATGGATTCAAGTATA+AGG | 0.302638 | 6_1:+18709255 | None:intergenic |
| TCATCATGTGCTGGTGGTGC+TGG | 0.307266 | 6_1:-18708912 | Msa0878150:CDS |
| CTTGGTGCTGCACTTGGTCT+TGG | 0.327659 | 6_1:-18709005 | Msa0878150:CDS |
| GCTGGTGTTGGTCTTGGTCT+TGG | 0.334704 | 6_1:-18708870 | Msa0878150:CDS |
| CTGCACTGGTATTGGTGATA+TGG | 0.337777 | 6_1:+18709050 | None:intergenic |
| CTGTCTCTTGGTGCTGCACT+TGG | 0.345570 | 6_1:-18709011 | Msa0878150:CDS |
| CTTGGTCTTGGTGCTGCTGC+TGG | 0.354290 | 6_1:-18708858 | Msa0878150:CDS |
| GTAATATTGGTTCATTCCTC+TGG | 0.359362 | 6_1:-18706149 | Msa0878150:CDS |
| GTTGGTGCTGGTGCTGGTGC+TGG | 0.360606 | 6_1:-18708888 | Msa0878150:CDS |
| GCTGGAGTTGGTGCTGGTGC+TGG | 0.360606 | 6_1:-18708894 | Msa0878150:CDS |
| GCTGGTGCTGGTGTTGGTCT+TGG | 0.361928 | 6_1:-18708876 | Msa0878150:CDS |
| TCAGTTCCAACCAATGAGTT+TGG | 0.369989 | 6_1:-18706122 | Msa0878150:CDS |
| GTTTGGTGAAGATGTAATAT+TGG | 0.373946 | 6_1:-18706162 | Msa0878150:CDS |
| AAATGAACAAGCAGCACAAC+TGG | 0.376059 | 6_1:-18705749 | Msa0878150:three_prime_UTR |
| TCAAATCAATTTGCCTCAAA+TGG | 0.378394 | 6_1:-18708796 | Msa0878150:CDS |
| GGTGGTGCTGGAGTTGGTGC+TGG | 0.393161 | 6_1:-18708900 | Msa0878150:CDS |
| TGTTGGTGCTGCACTGGTAT+TGG | 0.396373 | 6_1:+18709042 | None:intergenic |
| GCTGGTGCTGGTGCTGGTGT+TGG | 0.403303 | 6_1:-18708882 | Msa0878150:CDS |
| TCAAGTATAAGGATTTGTTC+AGG | 0.405750 | 6_1:+18709266 | None:intergenic |
| CAGTACTGCCACCGCTTAGT+TGG | 0.406811 | 6_1:+18709078 | None:intergenic |
| GGGTTTGGTGGTTTGTACTT+AGG | 0.411382 | 6_1:-18708825 | Msa0878150:CDS |
| GTACCCCTTGGCATTTCTGT+TGG | 0.414376 | 6_1:+18706206 | None:intergenic |
| AGTACTGCCACCGCTTAGTT+GGG | 0.417375 | 6_1:+18709079 | None:intergenic |
| GCATGGTGAAAGCTACTATC+TGG | 0.420994 | 6_1:-18706078 | Msa0878150:intron |
| GCTGGTGGAGAACAAGGGTT+TGG | 0.431515 | 6_1:-18708840 | Msa0878150:CDS |
| CTTGAGAAATTTGGAGCTGT+TGG | 0.435040 | 6_1:-18709179 | Msa0878150:CDS |
| GGTGCTGCACTTGGTCTTGG+TGG | 0.436302 | 6_1:-18709002 | Msa0878150:CDS |
| ATTGACATGAAAACAATGTT+TGG | 0.438397 | 6_1:-18706179 | Msa0878150:CDS |
| GTTGTTTGGATTATTAGTAT+TGG | 0.439777 | 6_1:+18709331 | None:intergenic |
| TGTGCTGGTGGTGCTGGAGT+TGG | 0.462401 | 6_1:-18708906 | Msa0878150:CDS |
| CATCTGCCTCTGACGGCGTC+GGG | 0.463584 | 6_1:+18709112 | None:intergenic |
| GCATCTGCCTCTGACGGCGT+CGG | 0.466933 | 6_1:+18709111 | None:intergenic |
| GCTGAAGTATTGTCCATTTG+AGG | 0.472860 | 6_1:+18708783 | None:intergenic |
| GCTGCTGCTGGTGGAGAACA+AGG | 0.478164 | 6_1:-18708846 | Msa0878150:CDS |
| GGTGGAGAACAAGGGTTTGG+TGG | 0.479255 | 6_1:-18708837 | Msa0878150:CDS |
| GGTTCGTCTTCATCATGTGC+TGG | 0.479575 | 6_1:-18708921 | Msa0878150:CDS |
| TCAAATTTCAACTATTACCC+AGG | 0.481334 | 6_1:-18708726 | Msa0878150:intron |
| AACAGTACCTCTCTGTCTCT+TGG | 0.490108 | 6_1:-18709023 | Msa0878150:CDS |
| CATCAAGAAACCAAACTCAT+TGG | 0.493495 | 6_1:+18706112 | None:intergenic |
| AAGAAACCAAACTCATTGGT+TGG | 0.499044 | 6_1:+18706116 | None:intergenic |
| GTGATCACAGTGTTTATCAA+TGG | 0.505244 | 6_1:-18706233 | Msa0878150:CDS |
| AGGTACTGTTGGTGCTGCAC+TGG | 0.511056 | 6_1:+18709036 | None:intergenic |
| CTCGCTCCCGACGCCGTCAG+AGG | 0.513233 | 6_1:-18709118 | Msa0878150:CDS |
| CGGCCTGCATCTGCCTCTGA+CGG | 0.528621 | 6_1:+18709105 | None:intergenic |
| ACGCCGTCAGAGGCAGATGC+AGG | 0.537355 | 6_1:-18709108 | Msa0878150:CDS |
| GACGGCGTCGGGAGCGAGAG+CGG | 0.542417 | 6_1:+18709123 | None:intergenic |
| GGTCTTGGTGCTGCTGCTGG+TGG | 0.543398 | 6_1:-18708855 | Msa0878150:CDS |
| ATGTCAATTGCAGTACCCCT+TGG | 0.550699 | 6_1:+18706194 | None:intergenic |
| AAATTTGAAGCATTATCAGA+AGG | 0.574791 | 6_1:+18708741 | None:intergenic |
| GAGTTCCAACAGAAATGCCA+AGG | 0.583354 | 6_1:-18706211 | Msa0878150:CDS |
| GTGAAACTGTGAGATCAAGA+TGG | 0.590101 | 6_1:-18709298 | Msa0878150:CDS |
| ACTGCCACCGCTTAGTTGGG+CGG | 0.608647 | 6_1:+18709082 | None:intergenic |
| AGAATTCATAGTGAAAGTTG+AGG | 0.624134 | 6_1:+18708977 | None:intergenic |
| GCCACCGCTTAGTTGGGCGG+CGG | 0.641411 | 6_1:+18709085 | None:intergenic |
| TGCAGCACCAAGAGACAGAG+AGG | 0.645908 | 6_1:+18709016 | None:intergenic |
| AACTTTGAGACTGAACATGT+TGG | 0.650519 | 6_1:+18709354 | None:intergenic |
| TCGTCTTCATCATGTGCTGG+TGG | 0.662728 | 6_1:-18708918 | Msa0878150:CDS |
| AAGAGACAGAGAGGTACTGT+TGG | 0.665242 | 6_1:+18709025 | None:intergenic |
| CTGCTGCTGGTGGAGAACAA+GGG | 0.666668 | 6_1:-18708845 | Msa0878150:CDS |
| TTGATGCAGAACTTGCAGCA+TGG | 0.678300 | 6_1:-18706095 | Msa0878150:CDS |
| AGTTCCAACAGAAATGCCAA+GGG | 0.681583 | 6_1:-18706210 | Msa0878150:CDS |
| GGTTGGAACTGAGACTCCAG+AGG | 0.711041 | 6_1:+18706133 | None:intergenic |
| GTTCCAACAGAAATGCCAAG+GGG | 0.773173 | 6_1:-18706209 | Msa0878150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATATTAATTTT+AGG | - | chr6_1:18708833-18708852 | Msa0878150:CDS | 0.0% |
| !!! | ATTTATTTATATTAATTTTA+GGG | - | chr6_1:18708834-18708853 | Msa0878150:CDS | 0.0% |
| !!! | TACTTATAATAATAACTTTT+CGG | - | chr6_1:18706180-18706199 | Msa0878150:CDS | 10.0% |
| !! | GTTCATAAAAAAAAAATTAT+AGG | + | chr6_1:18706458-18706477 | None:intergenic | 10.0% |
| !!! | ATATCATATTTTTTTGAAAA+GGG | + | chr6_1:18706661-18706680 | None:intergenic | 10.0% |
| !!! | AATATCATATTTTTTTGAAA+AGG | + | chr6_1:18706662-18706681 | None:intergenic | 10.0% |
| !!! | TAATTCATTTTAGTATATAA+TGG | - | chr6_1:18706961-18706980 | Msa0878150:intron | 10.0% |
| !!! | ATTTATTTGTAGTAAAATTT+TGG | - | chr6_1:18707251-18707270 | Msa0878150:intron | 10.0% |
| !!! | AAGTTTTTTAAGTTTTAAAT+AGG | + | chr6_1:18707394-18707413 | None:intergenic | 10.0% |
| !!! | ATTATTATTTCTCTTTTATT+AGG | - | chr6_1:18707721-18707740 | Msa0878150:intron | 10.0% |
| !!! | TTATTATTTCTCTTTTATTA+GGG | - | chr6_1:18707722-18707741 | Msa0878150:intron | 10.0% |
| !!! | GTTTAGAAATTTTTAAATTA+AGG | + | chr6_1:18708112-18708131 | None:intergenic | 10.0% |
| !!! | TTATTTATATTAATTTTAGG+GGG | - | chr6_1:18708836-18708855 | Msa0878150:CDS | 10.0% |
| !!! | ACTTATAATAATAACTTTTC+GGG | - | chr6_1:18706181-18706200 | Msa0878150:CDS | 15.0% |
| !! | GAACTTTCAAAAAAAAAAAA+TGG | + | chr6_1:18706607-18706626 | None:intergenic | 15.0% |
| !!! | TATCATATTTTTTTGAAAAG+GGG | + | chr6_1:18706660-18706679 | None:intergenic | 15.0% |
| !! | TCAAAATTTAATGAACTTAA+AGG | + | chr6_1:18707323-18707342 | None:intergenic | 15.0% |
| !!! | AAGTTCATTAAATTTTGAAT+AGG | - | chr6_1:18707325-18707344 | Msa0878150:intron | 15.0% |
| !!! | TTTGAAACTTAAAAAAACTT+AGG | - | chr6_1:18707451-18707470 | Msa0878150:intron | 15.0% |
| !! | TTAAAACTTAAAAAACTTGA+AGG | - | chr6_1:18707480-18707499 | Msa0878150:intron | 15.0% |
| !!! | TTTTTGTCAAATTAGTTTAA+AGG | - | chr6_1:18707515-18707534 | Msa0878150:intron | 15.0% |
| !!! | AATATTTGCATTACTTTTTT+AGG | - | chr6_1:18707620-18707639 | Msa0878150:intron | 15.0% |
| !!! | TATTATTTCTCTTTTATTAG+GGG | - | chr6_1:18707723-18707742 | Msa0878150:intron | 15.0% |
| !! | TAAAAAATATATAAAAGCAG+TGG | + | chr6_1:18707864-18707883 | None:intergenic | 15.0% |
| !!! | AAATAAAACTATCCTTTTTT+TGG | - | chr6_1:18707884-18707903 | Msa0878150:intron | 15.0% |
| !!! | TTAAATTAAGGAATTAGTTT+TGG | + | chr6_1:18708100-18708119 | None:intergenic | 15.0% |
| !! | GAAAAATAAGTTAAAAAAGA+AGG | + | chr6_1:18708306-18708325 | None:intergenic | 15.0% |
| !!! | TTTAATGAAGTTTTTTTTGA+AGG | - | chr6_1:18708728-18708747 | Msa0878150:CDS | 15.0% |
| !!! | AGTTTTTGAAATAAATGTTT+TGG | - | chr6_1:18709311-18709330 | Msa0878150:CDS | 15.0% |
| !! | AATAAATTAAGCATATACCT+GGG | + | chr6_1:18706417-18706436 | None:intergenic | 20.0% |
| !! | TATATGCTTAATTTATTGCA+TGG | - | chr6_1:18706420-18706439 | Msa0878150:intron | 20.0% |
| !! | ATATGCTTAATTTATTGCAT+GGG | - | chr6_1:18706421-18706440 | Msa0878150:intron | 20.0% |
| !! | GTTAAGATGATTACAAAATT+TGG | + | chr6_1:18706632-18706651 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTGAAAAGG+GGG | + | chr6_1:18706659-18706678 | None:intergenic | 20.0% |
| !!! | CTAATTTTTGTCCTTAAAAA+GGG | + | chr6_1:18706708-18706727 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTGTCCTTAAAA+AGG | + | chr6_1:18706709-18706728 | None:intergenic | 20.0% |
| !!! | GTTTGACAAAAATATTGATT+TGG | - | chr6_1:18707296-18707315 | Msa0878150:intron | 20.0% |
| !! | ACTGATTATAAACCAAAAAA+AGG | + | chr6_1:18707899-18707918 | None:intergenic | 20.0% |
| !! | GATTGAAGAATTAATAAAAG+TGG | - | chr6_1:18707928-18707947 | Msa0878150:intron | 20.0% |
| !! | TTCACTAATTTGGTATAATA+TGG | + | chr6_1:18708270-18708289 | None:intergenic | 20.0% |
| !! | TAATTGTATGTTTCAATTGT+CGG | + | chr6_1:18708643-18708662 | None:intergenic | 20.0% |
| ! | GTTGTTTGGATTATTAGTAT+TGG | + | chr6_1:18705795-18705814 | None:intergenic | 25.0% |
| !! | TGAAAATGGATTCAAGTATA+AGG | + | chr6_1:18705871-18705890 | None:intergenic | 25.0% |
| !! | AAGAAGTTTTCTTATTCTCA+CGG | + | chr6_1:18705927-18705946 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+TGG | - | chr6_1:18705935-18705954 | Msa0878150:intron | 25.0% |
| !!! | GTGATGCTAATGTTTTTTAT+TGG | - | chr6_1:18705966-18705985 | Msa0878150:intron | 25.0% |
| !! | AAATTTGAAGCATTATCAGA+AGG | + | chr6_1:18706385-18706404 | None:intergenic | 25.0% |
| ! | CAATAAATTAAGCATATACC+TGG | + | chr6_1:18706418-18706437 | None:intergenic | 25.0% |
| !! | TTAAGACAAAACCCTTTTTA+AGG | - | chr6_1:18706694-18706713 | Msa0878150:intron | 25.0% |
| ! | CTAAAATGAATTAGTAGTGT+AGG | + | chr6_1:18706954-18706973 | None:intergenic | 25.0% |
| ! | ATGTTTATGAGGTTATGTTA+TGG | - | chr6_1:18707021-18707040 | Msa0878150:intron | 25.0% |
| !!! | GTTTTAAATAGGTCCTTAAA+AGG | + | chr6_1:18707383-18707402 | None:intergenic | 25.0% |
| ! | AAAAACTTGAAGGACTAATT+CGG | - | chr6_1:18707490-18707509 | Msa0878150:intron | 25.0% |
| !!! | TGGTTTATAATCAGTTTTGA+TGG | - | chr6_1:18707904-18707923 | Msa0878150:intron | 25.0% |
| ! | AGAAAGGAATGTGATAAAAA+GGG | + | chr6_1:18708068-18708087 | None:intergenic | 25.0% |
| !! | TTTTTATCACATTCCTTTCT+GGG | - | chr6_1:18708068-18708087 | Msa0878150:intron | 25.0% |
| ! | GAATAGAGAAAAACAATCTA+GGG | + | chr6_1:18708134-18708153 | None:intergenic | 25.0% |
| ! | TGAATAGAGAAAAACAATCT+AGG | + | chr6_1:18708135-18708154 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATACTCTTCTCT+AGG | - | chr6_1:18708163-18708182 | Msa0878150:intron | 25.0% |
| ! | AGCAATTTCTTTCACTAATT+TGG | + | chr6_1:18708280-18708299 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGGAATGAATGAA+GGG | + | chr6_1:18708388-18708407 | None:intergenic | 25.0% |
| !! | AGTTTTCAACAAAATTGTCA+TGG | - | chr6_1:18708593-18708612 | Msa0878150:intron | 25.0% |
| !!! | ATATTAATTTTAGGGGGAAT+AGG | - | chr6_1:18708842-18708861 | Msa0878150:CDS | 25.0% |
| ! | ATTGACATGAAAACAATGTT+TGG | - | chr6_1:18708944-18708963 | Msa0878150:CDS | 25.0% |
| ! | ACCTCTCAAAAATAGTTTAA+AGG | - | chr6_1:18709184-18709203 | Msa0878150:CDS | 25.0% |
| !!! | ACCTTTAAACTATTTTTGAG+AGG | + | chr6_1:18709188-18709207 | None:intergenic | 25.0% |
| !! | ATAAGGATTTGTTCAGGTTT+TGG | + | chr6_1:18705854-18705873 | None:intergenic | 30.0% |
| ! | TCAAGTATAAGGATTTGTTC+AGG | + | chr6_1:18705860-18705879 | None:intergenic | 30.0% |
| ! | CTTGAATCCATTTTCAATAG+TGG | - | chr6_1:18705875-18705894 | Msa0878150:intron | 30.0% |
| !! | ATCCATTTTCAATAGTGGAA+TGG | - | chr6_1:18705880-18705899 | Msa0878150:intron | 30.0% |
| AGAATTCATAGTGAAAGTTG+AGG | + | chr6_1:18706149-18706168 | None:intergenic | 30.0% | |
| TCAAATCAATTTGCCTCAAA+TGG | - | chr6_1:18706327-18706346 | Msa0878150:intron | 30.0% | |
| TCAAATTTCAACTATTACCC+AGG | - | chr6_1:18706397-18706416 | Msa0878150:intron | 30.0% | |
| !! | ATTTTGATCCCAACTTAAAC+AGG | - | chr6_1:18706549-18706568 | Msa0878150:intron | 30.0% |
| ! | GTAAGAAACCTGTTTAAGTT+GGG | + | chr6_1:18706560-18706579 | None:intergenic | 30.0% |
| TGTAAGAAACCTGTTTAAGT+TGG | + | chr6_1:18706561-18706580 | None:intergenic | 30.0% | |
| !! | ATTCACCTACTTTTATACAG+TGG | - | chr6_1:18706896-18706915 | Msa0878150:intron | 30.0% |
| ATAAACATAGACTTGCAATG+GGG | + | chr6_1:18707009-18707028 | None:intergenic | 30.0% | |
| CATAAACATAGACTTGCAAT+GGG | + | chr6_1:18707010-18707029 | None:intergenic | 30.0% | |
| TCATAAACATAGACTTGCAA+TGG | + | chr6_1:18707011-18707030 | None:intergenic | 30.0% | |
| ATTGCAAGTCTATGTTTATG+AGG | - | chr6_1:18707010-18707029 | Msa0878150:intron | 30.0% | |
| ! | TTATATGCATAGTCTTGCTA+AGG | + | chr6_1:18707093-18707112 | None:intergenic | 30.0% |
| TAGCAAGACTATGCATATAA+TGG | - | chr6_1:18707093-18707112 | Msa0878150:intron | 30.0% | |
| AACTAACCTTGAATATCCTA+TGG | - | chr6_1:18707138-18707157 | Msa0878150:intron | 30.0% | |
| CAAAAACCATAGGATATTCA+AGG | + | chr6_1:18707147-18707166 | None:intergenic | 30.0% | |
| ! | AGCCAACAATTTTAGATTGT+GGG | + | chr6_1:18707838-18707857 | None:intergenic | 30.0% |
| ! | TAGCCAACAATTTTAGATTG+TGG | + | chr6_1:18707839-18707858 | None:intergenic | 30.0% |
| ! | TATGCTTTTCATTTAATCCC+AGG | + | chr6_1:18707979-18707998 | None:intergenic | 30.0% |
| ! | GTTGTACTAATCTTCTTTTC+CGG | - | chr6_1:18708002-18708021 | Msa0878150:intron | 30.0% |
| ! | AAAGTGAACTCATGTTTTTC+CGG | + | chr6_1:18708024-18708043 | None:intergenic | 30.0% |
| CAGAAAGGAATGTGATAAAA+AGG | + | chr6_1:18708069-18708088 | None:intergenic | 30.0% | |
| ! | CTTTTTATCACATTCCTTTC+TGG | - | chr6_1:18708067-18708086 | Msa0878150:intron | 30.0% |
| !!! | TTTTTCTGGAATGAATGAAG+GGG | + | chr6_1:18708387-18708406 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTGGAATGAATGA+AGG | + | chr6_1:18708389-18708408 | None:intergenic | 30.0% |
| CTTCATTCATTCCAGAAAAA+AGG | - | chr6_1:18708387-18708406 | Msa0878150:intron | 30.0% | |
| ! | AATCGATGATAATGCAAATG+TGG | - | chr6_1:18708483-18708502 | Msa0878150:intron | 30.0% |
| ATAATGAACCAAATTTGTCG+TGG | - | chr6_1:18708682-18708701 | Msa0878150:intron | 30.0% | |
| AAATAATGCCACGACAAATT+TGG | + | chr6_1:18708693-18708712 | None:intergenic | 30.0% | |
| ! | GTTTGGTGAAGATGTAATAT+TGG | - | chr6_1:18708961-18708980 | Msa0878150:CDS | 30.0% |
| !! | AACTTTGAGACTGAACATGT+TGG | + | chr6_1:18705772-18705791 | None:intergenic | 35.0% |
| !! | TCACTCTTTTCAGTGTTGTT+TGG | + | chr6_1:18705809-18705828 | None:intergenic | 35.0% |
| GACCATTCCACTATTGAAAA+TGG | + | chr6_1:18705885-18705904 | None:intergenic | 35.0% | |
| ! | ATTCTCACGGTTTCATCTTT+TGG | + | chr6_1:18705914-18705933 | None:intergenic | 35.0% |
| GAATCTACAACACTTGTCAA+AGG | + | chr6_1:18706874-18706893 | None:intergenic | 35.0% | |
| TAAACATAGACTTGCAATGG+GGG | + | chr6_1:18707008-18707027 | None:intergenic | 35.0% | |
| CACATCTAAGGAACATGAAA+GGG | + | chr6_1:18707186-18707205 | None:intergenic | 35.0% | |
| TCACATCTAAGGAACATGAA+AGG | + | chr6_1:18707187-18707206 | None:intergenic | 35.0% | |
| TTCATGTTCCTTAGATGTGA+TGG | - | chr6_1:18707187-18707206 | Msa0878150:intron | 35.0% | |
| !!! | AATACACCGTTAGCCTTTTA+AGG | - | chr6_1:18707367-18707386 | Msa0878150:intron | 35.0% |
| ATAGGTCCTTAAAAGGCTAA+CGG | + | chr6_1:18707376-18707395 | None:intergenic | 35.0% | |
| ! | CCAACAATTTTAGATTGTGG+GGG | + | chr6_1:18707836-18707855 | None:intergenic | 35.0% |
| ! | GCCAACAATTTTAGATTGTG+GGG | + | chr6_1:18707837-18707856 | None:intergenic | 35.0% |
| GGAACTGTCAAATCAACAAA+AGG | + | chr6_1:18707958-18707977 | None:intergenic | 35.0% | |
| !! | TTTGTTGATTTGACAGTTCC+TGG | - | chr6_1:18707958-18707977 | Msa0878150:intron | 35.0% |
| !! | TTGTTGATTTGACAGTTCCT+GGG | - | chr6_1:18707959-18707978 | Msa0878150:intron | 35.0% |
| GTTTCAATTGTCGGTGATAT+TGG | + | chr6_1:18708634-18708653 | None:intergenic | 35.0% | |
| !! | ATTTTAGGGGGAATAGGATA+TGG | - | chr6_1:18708848-18708867 | Msa0878150:CDS | 35.0% |
| !! | TTTTAGGGGGAATAGGATAT+GGG | - | chr6_1:18708849-18708868 | Msa0878150:CDS | 35.0% |
| GTGATCACAGTGTTTATCAA+TGG | - | chr6_1:18708890-18708909 | Msa0878150:CDS | 35.0% | |
| !! | GTAATATTGGTTCATTCCTC+TGG | - | chr6_1:18708974-18708993 | Msa0878150:CDS | 35.0% |
| AAGAAACCAAACTCATTGGT+TGG | + | chr6_1:18709010-18709029 | None:intergenic | 35.0% | |
| CATCAAGAAACCAAACTCAT+TGG | + | chr6_1:18709014-18709033 | None:intergenic | 35.0% | |
| AGACGACACTTATAATGAGA+CGG | + | chr6_1:18709099-18709118 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGTGTTTTTGTTCC+AGG | - | chr6_1:18709326-18709345 | Msa0878150:CDS | 35.0% |
| GTGAAACTGTGAGATCAAGA+TGG | - | chr6_1:18705825-18705844 | Msa0878150:intron | 40.0% | |
| ! | CTTGAGAAATTTGGAGCTGT+TGG | - | chr6_1:18705944-18705963 | Msa0878150:intron | 40.0% |
| !! | GCTGAAGTATTGTCCATTTG+AGG | + | chr6_1:18706343-18706362 | None:intergenic | 40.0% |
| !! | CACCTACTTTTATACAGTGG+CGG | - | chr6_1:18706899-18706918 | Msa0878150:intron | 40.0% |
| !! | AGCCACTTATAGTCTTGTGT+GGG | - | chr6_1:18706922-18706941 | Msa0878150:intron | 40.0% |
| GGTGAACATAGTCAACCAAT+AGG | - | chr6_1:18707042-18707061 | Msa0878150:intron | 40.0% | |
| AACCAATAGGATGAACACCT+TGG | - | chr6_1:18707055-18707074 | Msa0878150:intron | 40.0% | |
| ! | AACCAAGGTGTTCATCCTAT+TGG | + | chr6_1:18707060-18707079 | None:intergenic | 40.0% |
| TGGAGGCTTACAAAAACCAT+AGG | + | chr6_1:18707157-18707176 | None:intergenic | 40.0% | |
| ! | CCCCCACAATCTAAAATTGT+TGG | - | chr6_1:18707833-18707852 | Msa0878150:intron | 40.0% |
| !! | GTTTTGGATGAAACCCAGAA+AGG | + | chr6_1:18708084-18708103 | None:intergenic | 40.0% |
| CCTTGGGAAGACAAAATGAA+GGG | + | chr6_1:18708345-18708364 | None:intergenic | 40.0% | |
| !!! | CACTGTGATCTCCTTTTTTC+TGG | + | chr6_1:18708401-18708420 | None:intergenic | 40.0% |
| TTTAGGGGGAATAGGATATG+GGG | - | chr6_1:18708850-18708869 | Msa0878150:CDS | 40.0% | |
| AGTTCCAACAGAAATGCCAA+GGG | - | chr6_1:18708913-18708932 | Msa0878150:CDS | 40.0% | |
| TCAGTTCCAACCAATGAGTT+TGG | - | chr6_1:18709001-18709020 | Msa0878150:CDS | 40.0% | |
| ! | CTCACGGTTTCATCTTTTGG+TGG | + | chr6_1:18705911-18705930 | None:intergenic | 45.0% |
| !! | CTGCACTGGTATTGGTGATA+TGG | + | chr6_1:18706076-18706095 | None:intergenic | 45.0% |
| !! | AAGAGACAGAGAGGTACTGT+TGG | + | chr6_1:18706101-18706120 | None:intergenic | 45.0% |
| AACAGTACCTCTCTGTCTCT+TGG | - | chr6_1:18706100-18706119 | Msa0878150:CDS | 45.0% | |
| !! | GGGTTTGGTGGTTTGTACTT+AGG | - | chr6_1:18706298-18706317 | Msa0878150:intron | 45.0% |
| CTCCGCCACTGTATAAAAGT+AGG | + | chr6_1:18706904-18706923 | None:intergenic | 45.0% | |
| !! | GAGCCACTTATAGTCTTGTG+TGG | - | chr6_1:18706921-18706940 | Msa0878150:intron | 45.0% |
| TGCCCACACAAGACTATAAG+TGG | + | chr6_1:18706927-18706946 | None:intergenic | 45.0% | |
| ! | GGATGAACACCTTGGTTTGA+TGG | - | chr6_1:18707063-18707082 | Msa0878150:intron | 45.0% |
| ! | TAAGGCTAGCCATCAAACCA+AGG | + | chr6_1:18707075-18707094 | None:intergenic | 45.0% |
| ACATGAAAGGGTCATAGTGG+AGG | + | chr6_1:18707174-18707193 | None:intergenic | 45.0% | |
| GGAACATGAAAGGGTCATAG+TGG | + | chr6_1:18707177-18707196 | None:intergenic | 45.0% | |
| GTGCAAGTCCATCACATCTA+AGG | + | chr6_1:18707198-18707217 | None:intergenic | 45.0% | |
| ! | CCCTTCATTTTGTCTTCCCA+AGG | - | chr6_1:18708342-18708361 | Msa0878150:intron | 45.0% |
| GCCTTGGGAAGACAAAATGA+AGG | + | chr6_1:18708346-18708365 | None:intergenic | 45.0% | |
| CCTTTGTCACACTTTGCCTT+GGG | + | chr6_1:18708361-18708380 | None:intergenic | 45.0% | |
| TCCTTTGTCACACTTTGCCT+TGG | + | chr6_1:18708362-18708381 | None:intergenic | 45.0% | |
| TTAGGGGGAATAGGATATGG+GGG | - | chr6_1:18708851-18708870 | Msa0878150:CDS | 45.0% | |
| TATGGGGGGAGTAATGTTTC+AGG | - | chr6_1:18708866-18708885 | Msa0878150:CDS | 45.0% | |
| GAGTTCCAACAGAAATGCCA+AGG | - | chr6_1:18708912-18708931 | Msa0878150:CDS | 45.0% | |
| GTTCCAACAGAAATGCCAAG+GGG | - | chr6_1:18708914-18708933 | Msa0878150:CDS | 45.0% | |
| ATGTCAATTGCAGTACCCCT+TGG | + | chr6_1:18708932-18708951 | None:intergenic | 45.0% | |
| TTGATGCAGAACTTGCAGCA+TGG | - | chr6_1:18709028-18709047 | Msa0878150:CDS | 45.0% | |
| GCATGGTGAAAGCTACTATC+TGG | - | chr6_1:18709045-18709064 | Msa0878150:CDS | 45.0% | |
| !! | ATTAAACAAAAATTATTTAA+AGG | + | chr6_1:18706796-18706815 | None:intergenic | 5.0% |
| !!! | TTTATTTATATTAATTTTAG+GGG | - | chr6_1:18708835-18708854 | Msa0878150:CDS | 5.0% |
| !! | TGAAATAAAAAAATTTATTT+AGG | + | chr6_1:18709273-18709292 | None:intergenic | 5.0% |
| AGTACTGCCACCGCTTAGTT+GGG | + | chr6_1:18706047-18706066 | None:intergenic | 50.0% | |
| !! | TGTTGGTGCTGCACTGGTAT+TGG | + | chr6_1:18706084-18706103 | None:intergenic | 50.0% |
| GGTTCGTCTTCATCATGTGC+TGG | - | chr6_1:18706202-18706221 | Msa0878150:CDS | 50.0% | |
| TCGTCTTCATCATGTGCTGG+TGG | - | chr6_1:18706205-18706224 | Msa0878150:CDS | 50.0% | |
| ! | TTGCAATGGGGGCATGTAGT+TGG | + | chr6_1:18706997-18707016 | None:intergenic | 50.0% |
| CCCAAGGCAAAGTGTGACAA+AGG | - | chr6_1:18708358-18708377 | Msa0878150:intron | 50.0% | |
| TAGGGGGAATAGGATATGGG+GGG | - | chr6_1:18708852-18708871 | Msa0878150:CDS | 50.0% | |
| GTACCCCTTGGCATTTCTGT+TGG | + | chr6_1:18708920-18708939 | None:intergenic | 50.0% | |
| CTTGTGCTTGCTTTGACACC+TGG | + | chr6_1:18709347-18709366 | None:intergenic | 50.0% | |
| CAGTACTGCCACCGCTTAGT+TGG | + | chr6_1:18706048-18706067 | None:intergenic | 55.0% | |
| !! | AGGTACTGTTGGTGCTGCAC+TGG | + | chr6_1:18706090-18706109 | None:intergenic | 55.0% |
| TGCAGCACCAAGAGACAGAG+AGG | + | chr6_1:18706110-18706129 | None:intergenic | 55.0% | |
| !! | CTGTCTCTTGGTGCTGCACT+TGG | - | chr6_1:18706112-18706131 | Msa0878150:CDS | 55.0% |
| !! | CTTGGTGCTGCACTTGGTCT+TGG | - | chr6_1:18706118-18706137 | Msa0878150:CDS | 55.0% |
| ! | TCATCATGTGCTGGTGGTGC+TGG | - | chr6_1:18706211-18706230 | Msa0878150:CDS | 55.0% |
| !! | GCTGGTGTTGGTCTTGGTCT+TGG | - | chr6_1:18706253-18706272 | Msa0878150:CDS | 55.0% |
| CTGCTGCTGGTGGAGAACAA+GGG | - | chr6_1:18706278-18706297 | Msa0878150:intron | 55.0% | |
| GCTGGTGGAGAACAAGGGTT+TGG | - | chr6_1:18706283-18706302 | Msa0878150:intron | 55.0% | |
| GGTGGAGAACAAGGGTTTGG+TGG | - | chr6_1:18706286-18706305 | Msa0878150:intron | 55.0% | |
| GGTTGGAACTGAGACTCCAG+AGG | + | chr6_1:18708993-18709012 | None:intergenic | 55.0% | |
| ACTGCCACCGCTTAGTTGGG+CGG | + | chr6_1:18706044-18706063 | None:intergenic | 60.0% | |
| !! | GGTGCTGCACTTGGTCTTGG+TGG | - | chr6_1:18706121-18706140 | Msa0878150:CDS | 60.0% |
| ! | TGTGCTGGTGGTGCTGGAGT+TGG | - | chr6_1:18706217-18706236 | Msa0878150:CDS | 60.0% |
| !! | GCTGGTGCTGGTGTTGGTCT+TGG | - | chr6_1:18706247-18706266 | Msa0878150:CDS | 60.0% |
| !! | CTTGGTCTTGGTGCTGCTGC+TGG | - | chr6_1:18706265-18706284 | Msa0878150:CDS | 60.0% |
| GCTGCTGCTGGTGGAGAACA+AGG | - | chr6_1:18706277-18706296 | Msa0878150:intron | 60.0% | |
| CATCTGCCTCTGACGGCGTC+GGG | + | chr6_1:18706014-18706033 | None:intergenic | 65.0% | |
| GCATCTGCCTCTGACGGCGT+CGG | + | chr6_1:18706015-18706034 | None:intergenic | 65.0% | |
| ACGCCGTCAGAGGCAGATGC+AGG | - | chr6_1:18706015-18706034 | Msa0878150:intron | 65.0% | |
| CGGCCTGCATCTGCCTCTGA+CGG | + | chr6_1:18706021-18706040 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTGGAGTTGGTGC+TGG | - | chr6_1:18706223-18706242 | Msa0878150:CDS | 65.0% |
| !! | GCTGGAGTTGGTGCTGGTGC+TGG | - | chr6_1:18706229-18706248 | Msa0878150:CDS | 65.0% |
| !! | GTTGGTGCTGGTGCTGGTGC+TGG | - | chr6_1:18706235-18706254 | Msa0878150:CDS | 65.0% |
| !! | GCTGGTGCTGGTGCTGGTGT+TGG | - | chr6_1:18706241-18706260 | Msa0878150:CDS | 65.0% |
| !! | GGTCTTGGTGCTGCTGCTGG+TGG | - | chr6_1:18706268-18706287 | Msa0878150:CDS | 65.0% |
| CAGGCCGCCGCCCAACTAAG+CGG | - | chr6_1:18706034-18706053 | Msa0878150:intron | 70.0% | |
| GCCACCGCTTAGTTGGGCGG+CGG | + | chr6_1:18706041-18706060 | None:intergenic | 70.0% | |
| ! | GACGGCGTCGGGAGCGAGAG+CGG | + | chr6_1:18706003-18706022 | None:intergenic | 75.0% |
| CTCGCTCCCGACGCCGTCAG+AGG | - | chr6_1:18706005-18706024 | Msa0878150:intron | 75.0% | |
| GCCGCCGCCCAACTAAGCGG+TGG | - | chr6_1:18706037-18706056 | Msa0878150:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 18705749 | 18709396 | 18705749 | ID=Msa0878150;Name=Msa0878150 |
| chr6_1 | mRNA | 18705749 | 18709396 | 18705749 | ID=Msa0878150-mRNA-1;Parent=Msa0878150;Name=Msa0878150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|25|301 |
| chr6_1 | exon | 18705749 | 18705797 | 18705749 | ID=Msa0878150-mRNA-1:exon:5060;Parent=Msa0878150-mRNA-1 |
| chr6_1 | exon | 18706079 | 18706290 | 18706079 | ID=Msa0878150-mRNA-1:exon:5059;Parent=Msa0878150-mRNA-1 |
| chr6_1 | exon | 18708727 | 18709396 | 18708727 | ID=Msa0878150-mRNA-1:exon:5058;Parent=Msa0878150-mRNA-1 |
| chr6_1 | CDS | 18708727 | 18709396 | 18708727 | ID=Msa0878150-mRNA-1:cds;Parent=Msa0878150-mRNA-1 |
| chr6_1 | CDS | 18706079 | 18706290 | 18706079 | ID=Msa0878150-mRNA-1:cds;Parent=Msa0878150-mRNA-1 |
| chr6_1 | CDS | 18705774 | 18705797 | 18705774 | ID=Msa0878150-mRNA-1:cds;Parent=Msa0878150-mRNA-1 |
| chr6_1 | three_prime_UTR | 18705749 | 18705773 | 18705749 | ID=Msa0878150-mRNA-1:three_prime_utr;Parent=Msa0878150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
