Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412250 | sp|Q6X7J3|WOX11_ARATH | 51.000 | 300 | 111 | 7 | 3 | 299 | 2 | 268 | 1.16e-70 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412250 | A0A072U832 | 96.026 | 302 | 9 | 2 | 1 | 301 | 1 | 300 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1412250 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0878150 | Msa1412250 | 0.999910 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412250 | MtrunA17_Chr6g0460691 | 96.026 | 302 | 9 | 2 | 1 | 301 | 1 | 300 | 0.0 | 587 |
| Msa1412250 | MtrunA17_Chr7g0254251 | 46.519 | 316 | 110 | 9 | 1 | 301 | 1 | 272 | 1.35e-72 | 224 |
| Msa1412250 | MtrunA17_Chr7g0223471 | 62.857 | 70 | 26 | 0 | 24 | 93 | 39 | 108 | 5.55e-28 | 111 |
| Msa1412250 | MtrunA17_Chr2g0283141 | 62.500 | 72 | 27 | 0 | 24 | 95 | 47 | 118 | 1.56e-27 | 111 |
| Msa1412250 | MtrunA17_Chr8g0392991 | 43.333 | 90 | 50 | 1 | 11 | 99 | 75 | 164 | 4.91e-17 | 80.5 |
| Msa1412250 | MtrunA17_Chr4g0043891 | 35.000 | 80 | 52 | 0 | 31 | 110 | 7 | 86 | 1.37e-14 | 72.0 |
| Msa1412250 | MtrunA17_Chr1g0212511 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 3.88e-14 | 70.9 |
| Msa1412250 | MtrunA17_Chr3g0144021 | 47.692 | 65 | 34 | 0 | 28 | 92 | 78 | 142 | 1.60e-13 | 68.6 |
| Msa1412250 | MtrunA17_Chr5g0436661 | 37.500 | 64 | 40 | 0 | 32 | 95 | 33 | 96 | 3.42e-12 | 63.9 |
| Msa1412250 | MtrunA17_Chr5g0405351 | 40.625 | 64 | 37 | 1 | 31 | 93 | 29 | 92 | 3.75e-12 | 65.9 |
| Msa1412250 | MtrunA17_Chr4g0031341 | 40.299 | 67 | 40 | 0 | 32 | 98 | 25 | 91 | 4.04e-12 | 65.1 |
| Msa1412250 | MtrunA17_Chr7g0238431 | 40.625 | 64 | 38 | 0 | 31 | 94 | 7 | 70 | 7.67e-12 | 63.5 |
| Msa1412250 | MtrunA17_Chr7g0222981 | 41.538 | 65 | 38 | 0 | 29 | 93 | 65 | 129 | 8.65e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412250 | AT3G03660.1 | 51.000 | 300 | 111 | 7 | 3 | 299 | 2 | 268 | 1.18e-71 | 222 |
| Msa1412250 | AT5G17810.1 | 48.322 | 298 | 109 | 7 | 13 | 298 | 3 | 267 | 3.78e-71 | 221 |
| Msa1412250 | AT5G17810.2 | 48.322 | 298 | 109 | 7 | 13 | 298 | 3 | 267 | 3.78e-71 | 221 |
| Msa1412250 | AT5G17810.3 | 49.474 | 285 | 99 | 6 | 26 | 298 | 15 | 266 | 4.22e-71 | 221 |
| Msa1412250 | AT3G03660.4 | 51.186 | 295 | 110 | 6 | 3 | 295 | 2 | 264 | 9.63e-70 | 218 |
| Msa1412250 | AT3G03660.2 | 50.162 | 309 | 129 | 6 | 3 | 299 | 2 | 297 | 2.81e-69 | 217 |
| Msa1412250 | AT3G03660.3 | 50.492 | 305 | 126 | 6 | 3 | 295 | 2 | 293 | 2.94e-67 | 213 |
| Msa1412250 | AT2G33880.1 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.35e-27 | 110 |
| Msa1412250 | AT2G33880.2 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.56e-27 | 110 |
| Msa1412250 | AT5G45980.1 | 57.534 | 73 | 31 | 0 | 30 | 102 | 53 | 125 | 7.81e-26 | 105 |
| Msa1412250 | AT4G35550.1 | 47.692 | 65 | 34 | 0 | 28 | 92 | 95 | 159 | 2.44e-14 | 72.0 |
| Msa1412250 | AT3G18010.1 | 40.000 | 80 | 47 | 1 | 29 | 107 | 73 | 152 | 6.48e-14 | 71.6 |
| Msa1412250 | AT5G59340.1 | 39.706 | 68 | 41 | 0 | 31 | 98 | 13 | 80 | 7.45e-13 | 67.8 |
| Msa1412250 | AT1G20700.2 | 42.254 | 71 | 41 | 0 | 28 | 98 | 29 | 99 | 1.15e-12 | 65.1 |
| Msa1412250 | AT1G20700.1 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.89e-12 | 65.1 |
| Msa1412250 | AT1G20700.3 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.91e-12 | 65.1 |
| Msa1412250 | AT2G17950.1 | 42.188 | 64 | 36 | 1 | 31 | 93 | 37 | 100 | 3.22e-12 | 66.2 |
| Msa1412250 | AT2G28610.1 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 6.01e-12 | 64.7 |
| Msa1412250 | AT3G11260.1 | 34.884 | 86 | 47 | 1 | 32 | 117 | 24 | 100 | 6.63e-12 | 63.5 |
| Msa1412250 | AT1G46480.2 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 3.36e-11 | 61.6 |
| Msa1412250 | AT5G05770.1 | 37.500 | 64 | 40 | 0 | 32 | 95 | 29 | 92 | 6.53e-11 | 59.3 |
Find 67 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTTCTTGAGAAATT+TGG | 0.100600 | tig0023877:-67883 | Msa1412250:CDS |
| ATTCTCACGGTTTCATCTTT+TGG | 0.207436 | tig0023877:+67907 | None:intergenic |
| GACCATTCCACTATTGAAAA+TGG | 0.216187 | tig0023877:+67936 | None:intergenic |
| ATAAGGATTTGTTCAGGTTT+TGG | 0.291953 | tig0023877:+67967 | None:intergenic |
| TGAAAATGGATTCAAGTATA+AGG | 0.302638 | tig0023877:+67950 | None:intergenic |
| TCATCATGTGCTGGTGGTGC+TGG | 0.307266 | tig0023877:-67607 | Msa1412250:CDS |
| CTTGGTGCTGCACTTGGTCT+TGG | 0.327659 | tig0023877:-67700 | Msa1412250:CDS |
| GCTGGTGTTGGTCTTGGTCT+TGG | 0.334704 | tig0023877:-67565 | Msa1412250:CDS |
| CTGCACTGGTATTGGTGATA+TGG | 0.337777 | tig0023877:+67745 | None:intergenic |
| CTGTCTCTTGGTGCTGCACT+TGG | 0.345570 | tig0023877:-67706 | Msa1412250:CDS |
| CTTGGTCTTGGTGCTGCTGC+TGG | 0.354290 | tig0023877:-67553 | Msa1412250:CDS |
| GTAATATTGGTTCATTCCTC+TGG | 0.359362 | tig0023877:-64847 | Msa1412250:CDS |
| GTTGGTGCTGGTGCTGGTGC+TGG | 0.360606 | tig0023877:-67583 | Msa1412250:CDS |
| GCTGGAGTTGGTGCTGGTGC+TGG | 0.360606 | tig0023877:-67589 | Msa1412250:CDS |
| GCTGGTGCTGGTGTTGGTCT+TGG | 0.361928 | tig0023877:-67571 | Msa1412250:CDS |
| TCAGTTCCAACCAATGAGTT+TGG | 0.369989 | tig0023877:-64820 | Msa1412250:CDS |
| GTTTGGTGAAGATGTAATAT+TGG | 0.373946 | tig0023877:-64860 | Msa1412250:CDS |
| AAATGAACAAGCAGCACAAC+TGG | 0.376059 | tig0023877:-64447 | Msa1412250:three_prime_UTR |
| TCAAATCAATTTGCCTCAAA+TGG | 0.378394 | tig0023877:-67491 | Msa1412250:CDS |
| GGTGGTGCTGGAGTTGGTGC+TGG | 0.393161 | tig0023877:-67595 | Msa1412250:CDS |
| TGTTGGTGCTGCACTGGTAT+TGG | 0.396373 | tig0023877:+67737 | None:intergenic |
| GCTGGTGCTGGTGCTGGTGT+TGG | 0.403303 | tig0023877:-67577 | Msa1412250:CDS |
| TCAAGTATAAGGATTTGTTC+AGG | 0.405750 | tig0023877:+67961 | None:intergenic |
| CAGTACTGCCACCGCTTAGT+TGG | 0.406811 | tig0023877:+67773 | None:intergenic |
| GGGTTTGGTGGTTTGTACTT+AGG | 0.411382 | tig0023877:-67520 | Msa1412250:CDS |
| GTACCCCTTGGCATTTCTGT+TGG | 0.414376 | tig0023877:+64904 | None:intergenic |
| AGTACTGCCACCGCTTAGTT+GGG | 0.417375 | tig0023877:+67774 | None:intergenic |
| GCATGGTGAAAGCTACTATC+TGG | 0.420994 | tig0023877:-64776 | Msa1412250:intron |
| GCTGGTGGAGAACAAGGGTT+TGG | 0.431515 | tig0023877:-67535 | Msa1412250:CDS |
| CTTGAGAAATTTGGAGCTGT+TGG | 0.435040 | tig0023877:-67874 | Msa1412250:CDS |
| GGTGCTGCACTTGGTCTTGG+TGG | 0.436302 | tig0023877:-67697 | Msa1412250:CDS |
| ATTGACATGAAAACAATGTT+TGG | 0.438397 | tig0023877:-64877 | Msa1412250:CDS |
| GTTGTTTGGATTATTAGTAT+TGG | 0.439777 | tig0023877:+68026 | None:intergenic |
| TGTGCTGGTGGTGCTGGAGT+TGG | 0.462401 | tig0023877:-67601 | Msa1412250:CDS |
| CATCTGCCTCTGACGGCGTC+GGG | 0.463584 | tig0023877:+67807 | None:intergenic |
| GCATCTGCCTCTGACGGCGT+CGG | 0.466933 | tig0023877:+67806 | None:intergenic |
| GCTGAAGTATTGTCCATTTG+AGG | 0.472860 | tig0023877:+67478 | None:intergenic |
| GCTGCTGCTGGTGGAGAACA+AGG | 0.478164 | tig0023877:-67541 | Msa1412250:CDS |
| GGTGGAGAACAAGGGTTTGG+TGG | 0.479255 | tig0023877:-67532 | Msa1412250:CDS |
| GGTTCGTCTTCATCATGTGC+TGG | 0.479575 | tig0023877:-67616 | Msa1412250:CDS |
| TCAAATTTCAACTATTACCC+AGG | 0.481334 | tig0023877:-67421 | Msa1412250:intron |
| AACAGTACCTCTCTGTCTCT+TGG | 0.490108 | tig0023877:-67718 | Msa1412250:CDS |
| CATCAAGAAACCAAACTCAT+TGG | 0.493495 | tig0023877:+64810 | None:intergenic |
| AAGAAACCAAACTCATTGGT+TGG | 0.499044 | tig0023877:+64814 | None:intergenic |
| GTGATCACAGTGTTTATCAA+TGG | 0.505244 | tig0023877:-64931 | Msa1412250:CDS |
| AGGTACTGTTGGTGCTGCAC+TGG | 0.511056 | tig0023877:+67731 | None:intergenic |
| CTCGCTCCCGACGCCGTCAG+AGG | 0.513233 | tig0023877:-67813 | Msa1412250:CDS |
| CGGCCTGCATCTGCCTCTGA+CGG | 0.528621 | tig0023877:+67800 | None:intergenic |
| ACGCCGTCAGAGGCAGATGC+AGG | 0.537355 | tig0023877:-67803 | Msa1412250:CDS |
| GACGGCGTCGGGAGCGAGAG+CGG | 0.542417 | tig0023877:+67818 | None:intergenic |
| GGTCTTGGTGCTGCTGCTGG+TGG | 0.543398 | tig0023877:-67550 | Msa1412250:CDS |
| ATGTCAATTGCAGTACCCCT+TGG | 0.550699 | tig0023877:+64892 | None:intergenic |
| AAATTTGAAGCATTATCAGA+AGG | 0.574791 | tig0023877:+67436 | None:intergenic |
| GAGTTCCAACAGAAATGCCA+AGG | 0.583354 | tig0023877:-64909 | Msa1412250:CDS |
| GTGAAACTGTGAGATCAAGA+TGG | 0.590101 | tig0023877:-67993 | Msa1412250:CDS |
| ACTGCCACCGCTTAGTTGGG+CGG | 0.608647 | tig0023877:+67777 | None:intergenic |
| AGAATTCATAGTGAAAGTTG+AGG | 0.624134 | tig0023877:+67672 | None:intergenic |
| GCCACCGCTTAGTTGGGCGG+CGG | 0.641411 | tig0023877:+67780 | None:intergenic |
| TGCAGCACCAAGAGACAGAG+AGG | 0.645908 | tig0023877:+67711 | None:intergenic |
| AACTTTGAGACTGAACATGT+TGG | 0.650519 | tig0023877:+68049 | None:intergenic |
| TCGTCTTCATCATGTGCTGG+TGG | 0.662728 | tig0023877:-67613 | Msa1412250:CDS |
| AAGAGACAGAGAGGTACTGT+TGG | 0.665242 | tig0023877:+67720 | None:intergenic |
| CTGCTGCTGGTGGAGAACAA+GGG | 0.666668 | tig0023877:-67540 | Msa1412250:CDS |
| TTGATGCAGAACTTGCAGCA+TGG | 0.678300 | tig0023877:-64793 | Msa1412250:CDS |
| AGTTCCAACAGAAATGCCAA+GGG | 0.681583 | tig0023877:-64908 | Msa1412250:CDS |
| GGTTGGAACTGAGACTCCAG+AGG | 0.711041 | tig0023877:+64831 | None:intergenic |
| GTTCCAACAGAAATGCCAAG+GGG | 0.773173 | tig0023877:-64907 | Msa1412250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATATTAATTTT+AGG | - | tig0023877:67528-67547 | Msa1412250:CDS | 0.0% |
| !!! | ATTTATTTATATTAATTTTA+GGG | - | tig0023877:67529-67548 | Msa1412250:CDS | 0.0% |
| !!! | TACTTATAATAATAACTTTT+CGG | - | tig0023877:64878-64897 | Msa1412250:CDS | 10.0% |
| !! | GTTCATAAAAAAAAAATTAT+AGG | + | tig0023877:65156-65175 | None:intergenic | 10.0% |
| !!! | ATATCATATTTTTTTGAAAA+GGG | + | tig0023877:65359-65378 | None:intergenic | 10.0% |
| !!! | AATATCATATTTTTTTGAAA+AGG | + | tig0023877:65360-65379 | None:intergenic | 10.0% |
| !!! | TAATTCATTTTAGTATATAA+TGG | - | tig0023877:65660-65679 | Msa1412250:intron | 10.0% |
| !!! | ATTTATTTGTAGTAAAATTT+TGG | - | tig0023877:65950-65969 | Msa1412250:intron | 10.0% |
| !!! | AAGTTTTTTAAGTTTTAAAT+AGG | + | tig0023877:66092-66111 | None:intergenic | 10.0% |
| !!! | ATTATTATTTCTCTTTTATT+AGG | - | tig0023877:66418-66437 | Msa1412250:intron | 10.0% |
| !!! | TTATTATTTCTCTTTTATTA+GGG | - | tig0023877:66419-66438 | Msa1412250:intron | 10.0% |
| !!! | GTTTAGAAATTTTTAAATTA+AGG | + | tig0023877:66807-66826 | None:intergenic | 10.0% |
| !!! | TTATTTATATTAATTTTAGG+GGG | - | tig0023877:67531-67550 | Msa1412250:CDS | 10.0% |
| !!! | TTATTTCAAAAACTTTATTT+AGG | + | tig0023877:68000-68019 | None:intergenic | 10.0% |
| !!! | ACTTATAATAATAACTTTTC+GGG | - | tig0023877:64879-64898 | Msa1412250:CDS | 15.0% |
| !! | GAACTTTCAAAAAAAAAAAA+TGG | + | tig0023877:65305-65324 | None:intergenic | 15.0% |
| !!! | TATCATATTTTTTTGAAAAG+GGG | + | tig0023877:65358-65377 | None:intergenic | 15.0% |
| !! | TCAAAATTTAATGAACTTAA+AGG | + | tig0023877:66021-66040 | None:intergenic | 15.0% |
| !!! | AAGTTCATTAAATTTTGAAT+AGG | - | tig0023877:66023-66042 | Msa1412250:intron | 15.0% |
| !!! | TTTGAAACTTAAAAAAACTT+AGG | - | tig0023877:66149-66168 | Msa1412250:intron | 15.0% |
| !! | TTAAAACTTAAAAAACTTGA+AGG | - | tig0023877:66178-66197 | Msa1412250:intron | 15.0% |
| !!! | ATTTTGTCAAATTAGTTTAA+AGG | - | tig0023877:66212-66231 | Msa1412250:intron | 15.0% |
| !!! | AATATTTGCATTACTTTTTT+AGG | - | tig0023877:66317-66336 | Msa1412250:intron | 15.0% |
| !!! | TATTATTTCTCTTTTATTAG+GGG | - | tig0023877:66420-66439 | Msa1412250:intron | 15.0% |
| !! | TTAAAAATATATAAAAGCAG+TGG | + | tig0023877:66561-66580 | None:intergenic | 15.0% |
| !!! | AAAATAAAACTATCCTTTTT+TGG | - | tig0023877:66579-66598 | Msa1412250:intron | 15.0% |
| !!! | TTAAATTAAGGAATTAGTTT+TGG | + | tig0023877:66795-66814 | None:intergenic | 15.0% |
| !! | GAAAAATAAGTTAAAAAAGA+AGG | + | tig0023877:67001-67020 | None:intergenic | 15.0% |
| !!! | TTTAATGAAGTTTTTTTTGA+AGG | - | tig0023877:67423-67442 | Msa1412250:CDS | 15.0% |
| !!! | AGTTTTTGAAATAAATGTTT+TGG | - | tig0023877:68006-68025 | Msa1412250:CDS | 15.0% |
| !! | AATAAATTAAGCATATACCT+GGG | + | tig0023877:65115-65134 | None:intergenic | 20.0% |
| !! | TATATGCTTAATTTATTGCA+TGG | - | tig0023877:65118-65137 | Msa1412250:intron | 20.0% |
| !! | ATATGCTTAATTTATTGCAT+GGG | - | tig0023877:65119-65138 | Msa1412250:intron | 20.0% |
| !! | GTTAAGATGATTACAAAATT+TGG | + | tig0023877:65330-65349 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTGAAAAGG+GGG | + | tig0023877:65357-65376 | None:intergenic | 20.0% |
| !!! | CTAATTTTTGTCCTTAAAAA+GGG | + | tig0023877:65407-65426 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTGTCCTTAAAA+AGG | + | tig0023877:65408-65427 | None:intergenic | 20.0% |
| !!! | GTTTGACAAAAATATTGATT+TGG | - | tig0023877:65994-66013 | Msa1412250:intron | 20.0% |
| !! | AACTGATTATAAACCAAAAA+AGG | + | tig0023877:66595-66614 | None:intergenic | 20.0% |
| !! | GATTGAAGAATTAATAAAAG+TGG | - | tig0023877:66623-66642 | Msa1412250:intron | 20.0% |
| !! | TTCACTAATTTGGTATAATA+TGG | + | tig0023877:66965-66984 | None:intergenic | 20.0% |
| !! | TAATTGTATGTTTCAATTGT+CGG | + | tig0023877:67338-67357 | None:intergenic | 20.0% |
| ! | GTTGTTTGGATTATTAGTAT+TGG | + | tig0023877:64493-64512 | None:intergenic | 25.0% |
| !! | TGAAAATGGATTCAAGTATA+AGG | + | tig0023877:64569-64588 | None:intergenic | 25.0% |
| !! | AAGAAGTTTTCTTATTCTCA+CGG | + | tig0023877:64625-64644 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+TGG | - | tig0023877:64633-64652 | Msa1412250:intron | 25.0% |
| !!! | GTGATGCTAATGTTTTTTAT+TGG | - | tig0023877:64664-64683 | Msa1412250:intron | 25.0% |
| !! | AAATTTGAAGCATTATCAGA+AGG | + | tig0023877:65083-65102 | None:intergenic | 25.0% |
| ! | CAATAAATTAAGCATATACC+TGG | + | tig0023877:65116-65135 | None:intergenic | 25.0% |
| !! | TTAAGACAAAACCCTTTTTA+AGG | - | tig0023877:65393-65412 | Msa1412250:intron | 25.0% |
| ! | CTAAAATGAATTAGTAGTGT+AGG | + | tig0023877:65653-65672 | None:intergenic | 25.0% |
| ! | ATGTTTATGAGGTTATGTTA+TGG | - | tig0023877:65720-65739 | Msa1412250:intron | 25.0% |
| !!! | GTTTTAAATAGGTCCTTAAA+AGG | + | tig0023877:66081-66100 | None:intergenic | 25.0% |
| ! | AAAAACTTGAAGGACTAATT+CGG | - | tig0023877:66188-66207 | Msa1412250:intron | 25.0% |
| !!! | TGGTTTATAATCAGTTTTGA+TGG | - | tig0023877:66599-66618 | Msa1412250:intron | 25.0% |
| ! | AGAAAGGAATGTGATAAAAA+GGG | + | tig0023877:66763-66782 | None:intergenic | 25.0% |
| !! | TTTTTATCACATTCCTTTCT+GGG | - | tig0023877:66763-66782 | Msa1412250:intron | 25.0% |
| ! | GAATAGAGAAAAACAATCTA+GGG | + | tig0023877:66829-66848 | None:intergenic | 25.0% |
| ! | TGAATAGAGAAAAACAATCT+AGG | + | tig0023877:66830-66849 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATACTCTTCTCT+AGG | - | tig0023877:66858-66877 | Msa1412250:intron | 25.0% |
| ! | AGCAATTTCTTTCACTAATT+TGG | + | tig0023877:66975-66994 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGGAATGAATGAA+GGG | + | tig0023877:67083-67102 | None:intergenic | 25.0% |
| !! | AGTTTTCAACAAAATTGTCA+TGG | - | tig0023877:67288-67307 | Msa1412250:intron | 25.0% |
| !!! | ATATTAATTTTAGGGGGAAT+AGG | - | tig0023877:67537-67556 | Msa1412250:CDS | 25.0% |
| ! | ATTGACATGAAAACAATGTT+TGG | - | tig0023877:67639-67658 | Msa1412250:CDS | 25.0% |
| ! | ACCTCTCAAAAATAGTTTAA+AGG | - | tig0023877:67879-67898 | Msa1412250:CDS | 25.0% |
| !!! | ACCTTTAAACTATTTTTGAG+AGG | + | tig0023877:67883-67902 | None:intergenic | 25.0% |
| !! | ATAAGGATTTGTTCAGGTTT+TGG | + | tig0023877:64552-64571 | None:intergenic | 30.0% |
| ! | TCAAGTATAAGGATTTGTTC+AGG | + | tig0023877:64558-64577 | None:intergenic | 30.0% |
| ! | CTTGAATCCATTTTCAATAG+TGG | - | tig0023877:64573-64592 | Msa1412250:intron | 30.0% |
| !! | ATCCATTTTCAATAGTGGAA+TGG | - | tig0023877:64578-64597 | Msa1412250:intron | 30.0% |
| AGAATTCATAGTGAAAGTTG+AGG | + | tig0023877:64847-64866 | None:intergenic | 30.0% | |
| TCAAATCAATTTGCCTCAAA+TGG | - | tig0023877:65025-65044 | Msa1412250:intron | 30.0% | |
| TCAAATTTCAACTATTACCC+AGG | - | tig0023877:65095-65114 | Msa1412250:intron | 30.0% | |
| !! | ATTTTGATCCCAACTTAAAC+AGG | - | tig0023877:65247-65266 | Msa1412250:intron | 30.0% |
| ! | GTAAGAAACCTGTTTAAGTT+GGG | + | tig0023877:65258-65277 | None:intergenic | 30.0% |
| TGTAAGAAACCTGTTTAAGT+TGG | + | tig0023877:65259-65278 | None:intergenic | 30.0% | |
| !! | ATTCACCTACTTTTATACAG+TGG | - | tig0023877:65595-65614 | Msa1412250:intron | 30.0% |
| ATAAACATAGACTTGCAATG+GGG | + | tig0023877:65708-65727 | None:intergenic | 30.0% | |
| CATAAACATAGACTTGCAAT+GGG | + | tig0023877:65709-65728 | None:intergenic | 30.0% | |
| TCATAAACATAGACTTGCAA+TGG | + | tig0023877:65710-65729 | None:intergenic | 30.0% | |
| ATTGCAAGTCTATGTTTATG+AGG | - | tig0023877:65709-65728 | Msa1412250:intron | 30.0% | |
| ! | TTATATGCATAGTCTTGCTA+AGG | + | tig0023877:65792-65811 | None:intergenic | 30.0% |
| TAGCAAGACTATGCATATAA+TGG | - | tig0023877:65792-65811 | Msa1412250:intron | 30.0% | |
| AACTAACCTTGAATATCCTA+TGG | - | tig0023877:65837-65856 | Msa1412250:intron | 30.0% | |
| CAAAAACCATAGGATATTCA+AGG | + | tig0023877:65846-65865 | None:intergenic | 30.0% | |
| ! | AGCCAACAATTTTAGATTGT+GGG | + | tig0023877:66535-66554 | None:intergenic | 30.0% |
| ! | TAGCCAACAATTTTAGATTG+TGG | + | tig0023877:66536-66555 | None:intergenic | 30.0% |
| ! | TATGCTTTTCATTTAATCCC+AGG | + | tig0023877:66674-66693 | None:intergenic | 30.0% |
| ! | GTTGTACTAATCTTCTTTTC+CGG | - | tig0023877:66697-66716 | Msa1412250:intron | 30.0% |
| ! | AAAGTGAACTCATGTTTTTC+CGG | + | tig0023877:66719-66738 | None:intergenic | 30.0% |
| CAGAAAGGAATGTGATAAAA+AGG | + | tig0023877:66764-66783 | None:intergenic | 30.0% | |
| ! | CTTTTTATCACATTCCTTTC+TGG | - | tig0023877:66762-66781 | Msa1412250:intron | 30.0% |
| !!! | TTTTTCTGGAATGAATGAAG+GGG | + | tig0023877:67082-67101 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTGGAATGAATGA+AGG | + | tig0023877:67084-67103 | None:intergenic | 30.0% |
| CTTCATTCATTCCAGAAAAA+AGG | - | tig0023877:67082-67101 | Msa1412250:intron | 30.0% | |
| ! | AATCGATGATAATGCAAATG+TGG | - | tig0023877:67178-67197 | Msa1412250:intron | 30.0% |
| ATAATGAACCAAATTTGTCG+TGG | - | tig0023877:67377-67396 | Msa1412250:intron | 30.0% | |
| AAATAATGCCACGACAAATT+TGG | + | tig0023877:67388-67407 | None:intergenic | 30.0% | |
| ! | GTTTGGTGAAGATGTAATAT+TGG | - | tig0023877:67656-67675 | Msa1412250:CDS | 30.0% |
| !! | AACTTTGAGACTGAACATGT+TGG | + | tig0023877:64470-64489 | None:intergenic | 35.0% |
| !! | TCACTCTTTTCAGTGTTGTT+TGG | + | tig0023877:64507-64526 | None:intergenic | 35.0% |
| GACCATTCCACTATTGAAAA+TGG | + | tig0023877:64583-64602 | None:intergenic | 35.0% | |
| ! | ATTCTCACGGTTTCATCTTT+TGG | + | tig0023877:64612-64631 | None:intergenic | 35.0% |
| GAATCTACAACACTTGTCAA+AGG | + | tig0023877:65573-65592 | None:intergenic | 35.0% | |
| TAAACATAGACTTGCAATGG+GGG | + | tig0023877:65707-65726 | None:intergenic | 35.0% | |
| CACATCTAAGGAACATGAAA+GGG | + | tig0023877:65885-65904 | None:intergenic | 35.0% | |
| TCACATCTAAGGAACATGAA+AGG | + | tig0023877:65886-65905 | None:intergenic | 35.0% | |
| TTCATGTTCCTTAGATGTGA+TGG | - | tig0023877:65886-65905 | Msa1412250:intron | 35.0% | |
| !!! | AATACACCGTTAGCCTTTTA+AGG | - | tig0023877:66065-66084 | Msa1412250:intron | 35.0% |
| ATAGGTCCTTAAAAGGCTAA+CGG | + | tig0023877:66074-66093 | None:intergenic | 35.0% | |
| ! | CCAACAATTTTAGATTGTGG+GGG | + | tig0023877:66533-66552 | None:intergenic | 35.0% |
| ! | GCCAACAATTTTAGATTGTG+GGG | + | tig0023877:66534-66553 | None:intergenic | 35.0% |
| GGAACTGTCAAATCAACAAA+AGG | + | tig0023877:66653-66672 | None:intergenic | 35.0% | |
| !! | TTTGTTGATTTGACAGTTCC+TGG | - | tig0023877:66653-66672 | Msa1412250:intron | 35.0% |
| !! | TTGTTGATTTGACAGTTCCT+GGG | - | tig0023877:66654-66673 | Msa1412250:intron | 35.0% |
| GTTTCAATTGTCGGTGATAT+TGG | + | tig0023877:67329-67348 | None:intergenic | 35.0% | |
| !! | ATTTTAGGGGGAATAGGATA+TGG | - | tig0023877:67543-67562 | Msa1412250:CDS | 35.0% |
| !! | TTTTAGGGGGAATAGGATAT+GGG | - | tig0023877:67544-67563 | Msa1412250:CDS | 35.0% |
| GTGATCACAGTGTTTATCAA+TGG | - | tig0023877:67585-67604 | Msa1412250:CDS | 35.0% | |
| !! | GTAATATTGGTTCATTCCTC+TGG | - | tig0023877:67669-67688 | Msa1412250:CDS | 35.0% |
| AAGAAACCAAACTCATTGGT+TGG | + | tig0023877:67705-67724 | None:intergenic | 35.0% | |
| CATCAAGAAACCAAACTCAT+TGG | + | tig0023877:67709-67728 | None:intergenic | 35.0% | |
| AGACGACACTTATAATGAGA+CGG | + | tig0023877:67794-67813 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGTGTTTTTGTTCC+AGG | - | tig0023877:68021-68040 | Msa1412250:CDS | 35.0% |
| GTGAAACTGTGAGATCAAGA+TGG | - | tig0023877:64523-64542 | Msa1412250:intron | 40.0% | |
| ! | CTTGAGAAATTTGGAGCTGT+TGG | - | tig0023877:64642-64661 | Msa1412250:intron | 40.0% |
| !! | GCTGAAGTATTGTCCATTTG+AGG | + | tig0023877:65041-65060 | None:intergenic | 40.0% |
| !! | CACCTACTTTTATACAGTGG+CGG | - | tig0023877:65598-65617 | Msa1412250:intron | 40.0% |
| !! | AGCCACTTATAGTCTTGTGT+GGG | - | tig0023877:65621-65640 | Msa1412250:intron | 40.0% |
| GGTGAACATAGTCAACCAAT+AGG | - | tig0023877:65741-65760 | Msa1412250:intron | 40.0% | |
| AACCAATAGGATGAACACCT+TGG | - | tig0023877:65754-65773 | Msa1412250:intron | 40.0% | |
| ! | AACCAAGGTGTTCATCCTAT+TGG | + | tig0023877:65759-65778 | None:intergenic | 40.0% |
| TGGAGGCTTACAAAAACCAT+AGG | + | tig0023877:65856-65875 | None:intergenic | 40.0% | |
| ! | CCCCCACAATCTAAAATTGT+TGG | - | tig0023877:66530-66549 | Msa1412250:intron | 40.0% |
| !! | GTTTTGGATGAAACCCAGAA+AGG | + | tig0023877:66779-66798 | None:intergenic | 40.0% |
| CCTTGGGAAGACAAAATGAA+GGG | + | tig0023877:67040-67059 | None:intergenic | 40.0% | |
| !!! | CACTGTGATCTCCTTTTTTC+TGG | + | tig0023877:67096-67115 | None:intergenic | 40.0% |
| TTTAGGGGGAATAGGATATG+GGG | - | tig0023877:67545-67564 | Msa1412250:CDS | 40.0% | |
| AGTTCCAACAGAAATGCCAA+GGG | - | tig0023877:67608-67627 | Msa1412250:CDS | 40.0% | |
| TCAGTTCCAACCAATGAGTT+TGG | - | tig0023877:67696-67715 | Msa1412250:CDS | 40.0% | |
| ! | CTCACGGTTTCATCTTTTGG+TGG | + | tig0023877:64609-64628 | None:intergenic | 45.0% |
| !! | CTGCACTGGTATTGGTGATA+TGG | + | tig0023877:64774-64793 | None:intergenic | 45.0% |
| !! | AAGAGACAGAGAGGTACTGT+TGG | + | tig0023877:64799-64818 | None:intergenic | 45.0% |
| AACAGTACCTCTCTGTCTCT+TGG | - | tig0023877:64798-64817 | Msa1412250:CDS | 45.0% | |
| !! | GGGTTTGGTGGTTTGTACTT+AGG | - | tig0023877:64996-65015 | Msa1412250:intron | 45.0% |
| CTCCGCCACTGTATAAAAGT+AGG | + | tig0023877:65603-65622 | None:intergenic | 45.0% | |
| !! | GAGCCACTTATAGTCTTGTG+TGG | - | tig0023877:65620-65639 | Msa1412250:intron | 45.0% |
| TGCCCACACAAGACTATAAG+TGG | + | tig0023877:65626-65645 | None:intergenic | 45.0% | |
| ! | GGATGAACACCTTGGTTTGA+TGG | - | tig0023877:65762-65781 | Msa1412250:intron | 45.0% |
| ! | TAAGGCTAGCCATCAAACCA+AGG | + | tig0023877:65774-65793 | None:intergenic | 45.0% |
| ACATGAAAGGGTCATAGTGG+AGG | + | tig0023877:65873-65892 | None:intergenic | 45.0% | |
| GGAACATGAAAGGGTCATAG+TGG | + | tig0023877:65876-65895 | None:intergenic | 45.0% | |
| GTGCAAGTCCATCACATCTA+AGG | + | tig0023877:65897-65916 | None:intergenic | 45.0% | |
| ! | CCCTTCATTTTGTCTTCCCA+AGG | - | tig0023877:67037-67056 | Msa1412250:intron | 45.0% |
| GCCTTGGGAAGACAAAATGA+AGG | + | tig0023877:67041-67060 | None:intergenic | 45.0% | |
| CCTTTGTCACACTTTGCCTT+GGG | + | tig0023877:67056-67075 | None:intergenic | 45.0% | |
| TCCTTTGTCACACTTTGCCT+TGG | + | tig0023877:67057-67076 | None:intergenic | 45.0% | |
| TTAGGGGGAATAGGATATGG+GGG | - | tig0023877:67546-67565 | Msa1412250:CDS | 45.0% | |
| TATGGGGGGAGTAATGTTTC+AGG | - | tig0023877:67561-67580 | Msa1412250:CDS | 45.0% | |
| GAGTTCCAACAGAAATGCCA+AGG | - | tig0023877:67607-67626 | Msa1412250:CDS | 45.0% | |
| GTTCCAACAGAAATGCCAAG+GGG | - | tig0023877:67609-67628 | Msa1412250:CDS | 45.0% | |
| ATGTCAATTGCAGTACCCCT+TGG | + | tig0023877:67627-67646 | None:intergenic | 45.0% | |
| TTGATGCAGAACTTGCAGCA+TGG | - | tig0023877:67723-67742 | Msa1412250:CDS | 45.0% | |
| GCATGGTGAAAGCTACTATC+TGG | - | tig0023877:67740-67759 | Msa1412250:CDS | 45.0% | |
| !! | ATTAAACAAAAATTATTTAA+AGG | + | tig0023877:65495-65514 | None:intergenic | 5.0% |
| !!! | TTTATTTATATTAATTTTAG+GGG | - | tig0023877:67530-67549 | Msa1412250:CDS | 5.0% |
| !! | TGAAATAAAAAAATTTATTT+AGG | + | tig0023877:67968-67987 | None:intergenic | 5.0% |
| AGTACTGCCACCGCTTAGTT+GGG | + | tig0023877:64745-64764 | None:intergenic | 50.0% | |
| !! | TGTTGGTGCTGCACTGGTAT+TGG | + | tig0023877:64782-64801 | None:intergenic | 50.0% |
| GGTTCGTCTTCATCATGTGC+TGG | - | tig0023877:64900-64919 | Msa1412250:CDS | 50.0% | |
| TCGTCTTCATCATGTGCTGG+TGG | - | tig0023877:64903-64922 | Msa1412250:CDS | 50.0% | |
| ! | TTGCAATGGGGGCATGTAGT+TGG | + | tig0023877:65696-65715 | None:intergenic | 50.0% |
| CCCAAGGCAAAGTGTGACAA+AGG | - | tig0023877:67053-67072 | Msa1412250:intron | 50.0% | |
| TAGGGGGAATAGGATATGGG+GGG | - | tig0023877:67547-67566 | Msa1412250:CDS | 50.0% | |
| GTACCCCTTGGCATTTCTGT+TGG | + | tig0023877:67615-67634 | None:intergenic | 50.0% | |
| CTTGTGCTTGCTTTGACACC+TGG | + | tig0023877:68042-68061 | None:intergenic | 50.0% | |
| CAGTACTGCCACCGCTTAGT+TGG | + | tig0023877:64746-64765 | None:intergenic | 55.0% | |
| !! | AGGTACTGTTGGTGCTGCAC+TGG | + | tig0023877:64788-64807 | None:intergenic | 55.0% |
| TGCAGCACCAAGAGACAGAG+AGG | + | tig0023877:64808-64827 | None:intergenic | 55.0% | |
| !! | CTGTCTCTTGGTGCTGCACT+TGG | - | tig0023877:64810-64829 | Msa1412250:CDS | 55.0% |
| !! | CTTGGTGCTGCACTTGGTCT+TGG | - | tig0023877:64816-64835 | Msa1412250:CDS | 55.0% |
| ! | TCATCATGTGCTGGTGGTGC+TGG | - | tig0023877:64909-64928 | Msa1412250:CDS | 55.0% |
| !! | GCTGGTGTTGGTCTTGGTCT+TGG | - | tig0023877:64951-64970 | Msa1412250:CDS | 55.0% |
| CTGCTGCTGGTGGAGAACAA+GGG | - | tig0023877:64976-64995 | Msa1412250:intron | 55.0% | |
| GCTGGTGGAGAACAAGGGTT+TGG | - | tig0023877:64981-65000 | Msa1412250:intron | 55.0% | |
| GGTGGAGAACAAGGGTTTGG+TGG | - | tig0023877:64984-65003 | Msa1412250:intron | 55.0% | |
| GGTTGGAACTGAGACTCCAG+AGG | + | tig0023877:67688-67707 | None:intergenic | 55.0% | |
| ACTGCCACCGCTTAGTTGGG+CGG | + | tig0023877:64742-64761 | None:intergenic | 60.0% | |
| !! | GGTGCTGCACTTGGTCTTGG+TGG | - | tig0023877:64819-64838 | Msa1412250:CDS | 60.0% |
| ! | TGTGCTGGTGGTGCTGGAGT+TGG | - | tig0023877:64915-64934 | Msa1412250:CDS | 60.0% |
| !! | GCTGGTGCTGGTGTTGGTCT+TGG | - | tig0023877:64945-64964 | Msa1412250:CDS | 60.0% |
| !! | CTTGGTCTTGGTGCTGCTGC+TGG | - | tig0023877:64963-64982 | Msa1412250:CDS | 60.0% |
| GCTGCTGCTGGTGGAGAACA+AGG | - | tig0023877:64975-64994 | Msa1412250:intron | 60.0% | |
| CATCTGCCTCTGACGGCGTC+GGG | + | tig0023877:64712-64731 | None:intergenic | 65.0% | |
| GCATCTGCCTCTGACGGCGT+CGG | + | tig0023877:64713-64732 | None:intergenic | 65.0% | |
| ACGCCGTCAGAGGCAGATGC+AGG | - | tig0023877:64713-64732 | Msa1412250:intron | 65.0% | |
| CGGCCTGCATCTGCCTCTGA+CGG | + | tig0023877:64719-64738 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTGGAGTTGGTGC+TGG | - | tig0023877:64921-64940 | Msa1412250:CDS | 65.0% |
| !! | GCTGGAGTTGGTGCTGGTGC+TGG | - | tig0023877:64927-64946 | Msa1412250:CDS | 65.0% |
| !! | GTTGGTGCTGGTGCTGGTGC+TGG | - | tig0023877:64933-64952 | Msa1412250:CDS | 65.0% |
| !! | GCTGGTGCTGGTGCTGGTGT+TGG | - | tig0023877:64939-64958 | Msa1412250:CDS | 65.0% |
| !! | GGTCTTGGTGCTGCTGCTGG+TGG | - | tig0023877:64966-64985 | Msa1412250:CDS | 65.0% |
| CAGGCCGCCGCCCAACTAAG+CGG | - | tig0023877:64732-64751 | Msa1412250:intron | 70.0% | |
| GCCACCGCTTAGTTGGGCGG+CGG | + | tig0023877:64739-64758 | None:intergenic | 70.0% | |
| ! | GACGGCGTCGGGAGCGAGAG+CGG | + | tig0023877:64701-64720 | None:intergenic | 75.0% |
| CTCGCTCCCGACGCCGTCAG+AGG | - | tig0023877:64703-64722 | Msa1412250:intron | 75.0% | |
| GCCGCCGCCCAACTAAGCGG+TGG | - | tig0023877:64735-64754 | Msa1412250:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023877 | gene | 64447 | 68091 | 64447 | ID=Msa1412250;Name=Msa1412250 |
| tig0023877 | mRNA | 64447 | 68091 | 64447 | ID=Msa1412250-mRNA-1;Parent=Msa1412250;Name=Msa1412250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|25|301 |
| tig0023877 | exon | 64447 | 64495 | 64447 | ID=Msa1412250-mRNA-1:exon:20500;Parent=Msa1412250-mRNA-1 |
| tig0023877 | exon | 64777 | 64988 | 64777 | ID=Msa1412250-mRNA-1:exon:20499;Parent=Msa1412250-mRNA-1 |
| tig0023877 | exon | 67422 | 68091 | 67422 | ID=Msa1412250-mRNA-1:exon:20498;Parent=Msa1412250-mRNA-1 |
| tig0023877 | CDS | 67422 | 68091 | 67422 | ID=Msa1412250-mRNA-1:cds;Parent=Msa1412250-mRNA-1 |
| tig0023877 | CDS | 64777 | 64988 | 64777 | ID=Msa1412250-mRNA-1:cds;Parent=Msa1412250-mRNA-1 |
| tig0023877 | CDS | 64472 | 64495 | 64472 | ID=Msa1412250-mRNA-1:cds;Parent=Msa1412250-mRNA-1 |
| tig0023877 | three_prime_UTR | 64447 | 64471 | 64447 | ID=Msa1412250-mRNA-1:three_prime_utr;Parent=Msa1412250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
