Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879180 | XP_013446937.1 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 3.60e-87 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879180 | sp|A0LTY8|TAL_ACIC1 | 41.284 | 109 | 64 | 0 | 43 | 151 | 67 | 175 | 8.80e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879180 | A0A072TTX3 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 1.72e-87 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0879180 | Msa0879260 | 0.909794 | 3.838577e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879180 | MtrunA17_Chr8g0385641 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 3.31e-91 | 271 |
| Msa0879180 | MtrunA17_Chr7g0214741 | 57.396 | 169 | 43 | 1 | 10 | 149 | 79 | 247 | 1.92e-59 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879180 | AT5G13420.1 | 55.030 | 169 | 47 | 1 | 10 | 149 | 74 | 242 | 1.15e-56 | 183 |
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACTTTCATTGTAAAT+TGG | 0.204893 | 6_1:+20972872 | None:intergenic |
| TTAGTCTCATTCATTGCTTC+TGG | 0.240277 | 6_1:-20973409 | Msa0879180:CDS |
| AGCAAAATGTCTTCATAAAA+TGG | 0.254461 | 6_1:-20972780 | Msa0879180:CDS |
| TGCTGCCTCAATTGTTCCTT+TGG | 0.274051 | 6_1:+20972799 | None:intergenic |
| TTGGTATCATTTGCAAGCTT+GGG | 0.282742 | 6_1:+20972818 | None:intergenic |
| TTCTCCAGGCGCTCCCATCT+TGG | 0.309788 | 6_1:+20972122 | None:intergenic |
| TTTGGTATCATTTGCAAGCT+TGG | 0.358958 | 6_1:+20972817 | None:intergenic |
| TGAATCCATACCTTCAATAA+AGG | 0.381226 | 6_1:-20972717 | Msa0879180:CDS |
| GACTTCCTTTATTGAAGGTA+TGG | 0.385008 | 6_1:+20972712 | None:intergenic |
| GAAATGACTTCCTTTATTGA+AGG | 0.409109 | 6_1:+20972707 | None:intergenic |
| AGAAAGTGCCTACTGGGAAT+TGG | 0.431864 | 6_1:-20972933 | Msa0879180:CDS |
| AATGAAAGTGATGGTATTGA+TGG | 0.433706 | 6_1:-20972863 | Msa0879180:CDS |
| ACATGATACTTGCAAACTCT+TGG | 0.445554 | 6_1:-20972897 | Msa0879180:CDS |
| GGGTCCAAGATGGGAGCGCC+TGG | 0.449074 | 6_1:-20972126 | Msa0879180:CDS |
| CGACATAGATTATCATAGTA+AGG | 0.462561 | 6_1:+20973445 | None:intergenic |
| AAGACACAGAAAGTGCCTAC+TGG | 0.479319 | 6_1:-20972940 | Msa0879180:CDS |
| TTCATTGCTTCTGGAATCAA+AGG | 0.488326 | 6_1:-20973400 | Msa0879180:intron |
| AAATGTCTTCATAAAATGGT+TGG | 0.493644 | 6_1:-20972776 | Msa0879180:CDS |
| TGGTATCATTTGCAAGCTTG+GGG | 0.514659 | 6_1:+20972819 | None:intergenic |
| AGACACAGAAAGTGCCTACT+GGG | 0.556923 | 6_1:-20972939 | Msa0879180:CDS |
| CCAATTTACAATGAAAGTGA+TGG | 0.588254 | 6_1:-20972872 | Msa0879180:CDS |
| TGATACCAAAGGAACAATTG+AGG | 0.596805 | 6_1:-20972804 | Msa0879180:CDS |
| TGGGAGCGCCTGGAGAAGAG+AGG | 0.612281 | 6_1:-20972116 | Msa0879180:CDS |
| GGTATCATTTGCAAGCTTGG+GGG | 0.641883 | 6_1:+20972820 | None:intergenic |
| CTACTGGGAATTGGTTGTGA+AGG | 0.645680 | 6_1:-20972924 | Msa0879180:CDS |
| AAGCTTGCAAATGATACCAA+AGG | 0.647015 | 6_1:-20972815 | Msa0879180:CDS |
| CTTCACAACCAATTCCCAGT+AGG | 0.661904 | 6_1:+20972925 | None:intergenic |
| ATGAAAGTGATGGTATTGAT+GGG | 0.670819 | 6_1:-20972862 | Msa0879180:CDS |
| ATAGTAACGCGACATTCACA+AGG | 0.677356 | 6_1:-20973507 | Msa0879180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATACTAATTTAATTTA+TGG | - | chr6_1:20972618-20972637 | Msa0879180:intron | 10.0% |
| !!! | AATGATACTAATTTAATTTA+TGG | - | chr6_1:20972618-20972637 | Msa0879180:intron | 10.0% |
| !!! | GTAATTTTAATATAAACGTT+TGG | + | chr6_1:20972862-20972881 | None:intergenic | 15.0% |
| !!! | GTAATTTTAATATAAACGTT+TGG | + | chr6_1:20972862-20972881 | None:intergenic | 15.0% |
| !!! | GATTTTGCCTTTTAAATTAA+TGG | - | chr6_1:20972305-20972324 | Msa0879180:intron | 20.0% |
| !!! | AATTTAATTTATGGTTAAGC+AGG | - | chr6_1:20972627-20972646 | Msa0879180:intron | 20.0% |
| !!! | ATTTAATTTATGGTTAAGCA+GGG | - | chr6_1:20972628-20972647 | Msa0879180:intron | 20.0% |
| !! | TATGATTTACAATGTTGTAA+TGG | - | chr6_1:20973397-20973416 | Msa0879180:intron | 20.0% |
| !!! | GATTTTGCCTTTTAAATTAA+TGG | - | chr6_1:20972305-20972324 | Msa0879180:intron | 20.0% |
| !!! | AATTTAATTTATGGTTAAGC+AGG | - | chr6_1:20972627-20972646 | Msa0879180:intron | 20.0% |
| !!! | ATTTAATTTATGGTTAAGCA+GGG | - | chr6_1:20972628-20972647 | Msa0879180:intron | 20.0% |
| !! | TATGATTTACAATGTTGTAA+TGG | - | chr6_1:20973397-20973416 | Msa0879180:intron | 20.0% |
| ! | GTGAAAGCCATTAATTTAAA+AGG | + | chr6_1:20972315-20972334 | None:intergenic | 25.0% |
| ! | ATGCTTACAATCAGTAATTA+AGG | - | chr6_1:20972394-20972413 | Msa0879180:intron | 25.0% |
| !!! | AAGTGTGTAGTTTTTTTTGA+AGG | - | chr6_1:20972478-20972497 | Msa0879180:intron | 25.0% |
| !!! | GTAGTTTTTTTTGAAGGAAA+AGG | - | chr6_1:20972484-20972503 | Msa0879180:intron | 25.0% |
| !! | TTTAATTTATGGTTAAGCAG+GGG | - | chr6_1:20972629-20972648 | Msa0879180:intron | 25.0% |
| ! | AGCAAAATGTCTTCATAAAA+TGG | - | chr6_1:20972828-20972847 | Msa0879180:CDS | 25.0% |
| ! | AAATGTCTTCATAAAATGGT+TGG | - | chr6_1:20972832-20972851 | Msa0879180:CDS | 25.0% |
| ! | CTATATAAGCATATTGATGT+TGG | + | chr6_1:20973014-20973033 | None:intergenic | 25.0% |
| ! | TAATAACTGCTTCATATGTA+GGG | + | chr6_1:20973068-20973087 | None:intergenic | 25.0% |
| ! | TTAATAACTGCTTCATATGT+AGG | + | chr6_1:20973069-20973088 | None:intergenic | 25.0% |
| ! | GTGAAAGCCATTAATTTAAA+AGG | + | chr6_1:20972315-20972334 | None:intergenic | 25.0% |
| ! | ATGCTTACAATCAGTAATTA+AGG | - | chr6_1:20972394-20972413 | Msa0879180:intron | 25.0% |
| !!! | AAGTGTGTAGTTTTTTTTGA+AGG | - | chr6_1:20972478-20972497 | Msa0879180:intron | 25.0% |
| !!! | GTAGTTTTTTTTGAAGGAAA+AGG | - | chr6_1:20972484-20972503 | Msa0879180:intron | 25.0% |
| !! | TTTAATTTATGGTTAAGCAG+GGG | - | chr6_1:20972629-20972648 | Msa0879180:intron | 25.0% |
| ! | AGCAAAATGTCTTCATAAAA+TGG | - | chr6_1:20972828-20972847 | Msa0879180:CDS | 25.0% |
| ! | AAATGTCTTCATAAAATGGT+TGG | - | chr6_1:20972832-20972851 | Msa0879180:CDS | 25.0% |
| ! | CTATATAAGCATATTGATGT+TGG | + | chr6_1:20973014-20973033 | None:intergenic | 25.0% |
| ! | TAATAACTGCTTCATATGTA+GGG | + | chr6_1:20973068-20973087 | None:intergenic | 25.0% |
| ! | TTAATAACTGCTTCATATGT+AGG | + | chr6_1:20973069-20973088 | None:intergenic | 25.0% |
| CGACATAGATTATCATAGTA+AGG | + | chr6_1:20972166-20972185 | None:intergenic | 30.0% | |
| CTTTCAAAGAGAGTAATTGA+AGG | + | chr6_1:20972277-20972296 | None:intergenic | 30.0% | |
| TCTGCAATATGTAAACATTG+TGG | + | chr6_1:20972347-20972366 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAAAAGGTTTG+TGG | - | chr6_1:20972491-20972510 | Msa0879180:intron | 30.0% |
| !! | TTTTGAAGGAAAAGGTTTGT+GGG | - | chr6_1:20972492-20972511 | Msa0879180:intron | 30.0% |
| CCATCACTTTCATTGTAAAT+TGG | + | chr6_1:20972739-20972758 | None:intergenic | 30.0% | |
| CCAATTTACAATGAAAGTGA+TGG | - | chr6_1:20972736-20972755 | Msa0879180:CDS | 30.0% | |
| ! | AATGAAAGTGATGGTATTGA+TGG | - | chr6_1:20972745-20972764 | Msa0879180:CDS | 30.0% |
| !! | ATGAAAGTGATGGTATTGAT+GGG | - | chr6_1:20972746-20972765 | Msa0879180:CDS | 30.0% |
| TGAATCCATACCTTCAATAA+AGG | - | chr6_1:20972891-20972910 | Msa0879180:CDS | 30.0% | |
| GAAATGACTTCCTTTATTGA+AGG | + | chr6_1:20972904-20972923 | None:intergenic | 30.0% | |
| AGCAGTTATTAATGCTTACT+TGG | - | chr6_1:20973077-20973096 | Msa0879180:intron | 30.0% | |
| GTTATTAATGCTTACTTGGA+TGG | - | chr6_1:20973081-20973100 | Msa0879180:intron | 30.0% | |
| ! | AATGTTGTAATGGTTGTTTC+AGG | - | chr6_1:20973407-20973426 | Msa0879180:CDS | 30.0% |
| !! | AAAACATTTTCTGGTAAAGC+TGG | + | chr6_1:20973461-20973480 | None:intergenic | 30.0% |
| ! | GCTTTACCAGAAAATGTTTT+CGG | - | chr6_1:20973461-20973480 | Msa0879180:CDS | 30.0% |
| ! | CTTTACCAGAAAATGTTTTC+GGG | - | chr6_1:20973462-20973481 | Msa0879180:CDS | 30.0% |
| CGACATAGATTATCATAGTA+AGG | + | chr6_1:20972166-20972185 | None:intergenic | 30.0% | |
| CTTTCAAAGAGAGTAATTGA+AGG | + | chr6_1:20972277-20972296 | None:intergenic | 30.0% | |
| TCTGCAATATGTAAACATTG+TGG | + | chr6_1:20972347-20972366 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAAAAGGTTTG+TGG | - | chr6_1:20972491-20972510 | Msa0879180:intron | 30.0% |
| !! | TTTTGAAGGAAAAGGTTTGT+GGG | - | chr6_1:20972492-20972511 | Msa0879180:intron | 30.0% |
| CCATCACTTTCATTGTAAAT+TGG | + | chr6_1:20972739-20972758 | None:intergenic | 30.0% | |
| CCAATTTACAATGAAAGTGA+TGG | - | chr6_1:20972736-20972755 | Msa0879180:CDS | 30.0% | |
| ! | AATGAAAGTGATGGTATTGA+TGG | - | chr6_1:20972745-20972764 | Msa0879180:CDS | 30.0% |
| !! | ATGAAAGTGATGGTATTGAT+GGG | - | chr6_1:20972746-20972765 | Msa0879180:CDS | 30.0% |
| TGAATCCATACCTTCAATAA+AGG | - | chr6_1:20972891-20972910 | Msa0879180:CDS | 30.0% | |
| GAAATGACTTCCTTTATTGA+AGG | + | chr6_1:20972904-20972923 | None:intergenic | 30.0% | |
| AGCAGTTATTAATGCTTACT+TGG | - | chr6_1:20973077-20973096 | Msa0879180:intron | 30.0% | |
| GTTATTAATGCTTACTTGGA+TGG | - | chr6_1:20973081-20973100 | Msa0879180:intron | 30.0% | |
| ! | AATGTTGTAATGGTTGTTTC+AGG | - | chr6_1:20973407-20973426 | Msa0879180:CDS | 30.0% |
| !! | AAAACATTTTCTGGTAAAGC+TGG | + | chr6_1:20973461-20973480 | None:intergenic | 30.0% |
| ! | GCTTTACCAGAAAATGTTTT+CGG | - | chr6_1:20973461-20973480 | Msa0879180:CDS | 30.0% |
| ! | CTTTACCAGAAAATGTTTTC+GGG | - | chr6_1:20973462-20973481 | Msa0879180:CDS | 30.0% |
| TTAGTCTCATTCATTGCTTC+TGG | - | chr6_1:20972199-20972218 | Msa0879180:intron | 35.0% | |
| !! | TTCATTGCTTCTGGAATCAA+AGG | - | chr6_1:20972208-20972227 | Msa0879180:intron | 35.0% |
| AAAAATGAGAAGAATACCGC+AGG | + | chr6_1:20972247-20972266 | None:intergenic | 35.0% | |
| TCAAAGAGAGTAATTGAAGG+TGG | + | chr6_1:20972274-20972293 | None:intergenic | 35.0% | |
| GCAATATGTAAACATTGTGG+TGG | + | chr6_1:20972344-20972363 | None:intergenic | 35.0% | |
| ACATGATACTTGCAAACTCT+TGG | - | chr6_1:20972711-20972730 | Msa0879180:CDS | 35.0% | |
| TTGGTATCATTTGCAAGCTT+GGG | + | chr6_1:20972793-20972812 | None:intergenic | 35.0% | |
| TTTGGTATCATTTGCAAGCT+TGG | + | chr6_1:20972794-20972813 | None:intergenic | 35.0% | |
| AAGCTTGCAAATGATACCAA+AGG | - | chr6_1:20972793-20972812 | Msa0879180:CDS | 35.0% | |
| TGATACCAAAGGAACAATTG+AGG | - | chr6_1:20972804-20972823 | Msa0879180:CDS | 35.0% | |
| GACTTCCTTTATTGAAGGTA+TGG | + | chr6_1:20972899-20972918 | None:intergenic | 35.0% | |
| TAGTAACACTGATCTCTCAA+AGG | - | chr6_1:20973116-20973135 | Msa0879180:intron | 35.0% | |
| AGGTAGACAGCAAAAGTTAA+GGG | + | chr6_1:20973268-20973287 | None:intergenic | 35.0% | |
| AAGGTAGACAGCAAAAGTTA+AGG | + | chr6_1:20973269-20973288 | None:intergenic | 35.0% | |
| GTCATTAGATGGAGATCAAT+CGG | - | chr6_1:20973353-20973372 | Msa0879180:intron | 35.0% | |
| TTAGTCTCATTCATTGCTTC+TGG | - | chr6_1:20972199-20972218 | Msa0879180:intron | 35.0% | |
| !! | TTCATTGCTTCTGGAATCAA+AGG | - | chr6_1:20972208-20972227 | Msa0879180:intron | 35.0% |
| AAAAATGAGAAGAATACCGC+AGG | + | chr6_1:20972247-20972266 | None:intergenic | 35.0% | |
| TCAAAGAGAGTAATTGAAGG+TGG | + | chr6_1:20972274-20972293 | None:intergenic | 35.0% | |
| GCAATATGTAAACATTGTGG+TGG | + | chr6_1:20972344-20972363 | None:intergenic | 35.0% | |
| ACATGATACTTGCAAACTCT+TGG | - | chr6_1:20972711-20972730 | Msa0879180:CDS | 35.0% | |
| TTGGTATCATTTGCAAGCTT+GGG | + | chr6_1:20972793-20972812 | None:intergenic | 35.0% | |
| TTTGGTATCATTTGCAAGCT+TGG | + | chr6_1:20972794-20972813 | None:intergenic | 35.0% | |
| AAGCTTGCAAATGATACCAA+AGG | - | chr6_1:20972793-20972812 | Msa0879180:CDS | 35.0% | |
| TGATACCAAAGGAACAATTG+AGG | - | chr6_1:20972804-20972823 | Msa0879180:CDS | 35.0% | |
| GACTTCCTTTATTGAAGGTA+TGG | + | chr6_1:20972899-20972918 | None:intergenic | 35.0% | |
| TAGTAACACTGATCTCTCAA+AGG | - | chr6_1:20973116-20973135 | Msa0879180:intron | 35.0% | |
| AGGTAGACAGCAAAAGTTAA+GGG | + | chr6_1:20973268-20973287 | None:intergenic | 35.0% | |
| AAGGTAGACAGCAAAAGTTA+AGG | + | chr6_1:20973269-20973288 | None:intergenic | 35.0% | |
| GTCATTAGATGGAGATCAAT+CGG | - | chr6_1:20973353-20973372 | Msa0879180:intron | 35.0% | |
| ATAGTAACGCGACATTCACA+AGG | - | chr6_1:20972101-20972120 | Msa0879180:CDS | 40.0% | |
| AAGAGAGTAATTGAAGGTGG+AGG | + | chr6_1:20972271-20972290 | None:intergenic | 40.0% | |
| AGAAAGTTGAGAATTGCGAG+AGG | - | chr6_1:20972450-20972469 | Msa0879180:intron | 40.0% | |
| ATTTATGGTTAAGCAGGGGT+TGG | - | chr6_1:20972633-20972652 | Msa0879180:intron | 40.0% | |
| TGGTATCATTTGCAAGCTTG+GGG | + | chr6_1:20972792-20972811 | None:intergenic | 40.0% | |
| CAGCTTTCTAATCAGTAGAG+TGG | - | chr6_1:20973151-20973170 | Msa0879180:intron | 40.0% | |
| GACAAGAAACTTGAGCAGAT+TGG | - | chr6_1:20973190-20973209 | Msa0879180:intron | 40.0% | |
| AAACTTGAGCAGATTGGTAC+CGG | - | chr6_1:20973196-20973215 | Msa0879180:intron | 40.0% | |
| TGTGAGATCAAGAGTTTCAC+CGG | + | chr6_1:20973218-20973237 | None:intergenic | 40.0% | |
| AACTCTTGATCTCACAGGAA+AGG | - | chr6_1:20973222-20973241 | Msa0879180:intron | 40.0% | |
| !! | TTTTGCTGTCTACCTTTTCG+CGG | - | chr6_1:20973273-20973292 | Msa0879180:intron | 40.0% |
| CGTAAACGTCAGTCATTAGA+TGG | - | chr6_1:20973342-20973361 | Msa0879180:intron | 40.0% | |
| ! | TTGGACCCGAAAACATTTTC+TGG | + | chr6_1:20973470-20973489 | None:intergenic | 40.0% |
| !!! | AAATGTTTTCGGGTCCAAGA+TGG | - | chr6_1:20973472-20973491 | Msa0879180:CDS | 40.0% |
| !!! | AATGTTTTCGGGTCCAAGAT+GGG | - | chr6_1:20973473-20973492 | Msa0879180:CDS | 40.0% |
| ATAGTAACGCGACATTCACA+AGG | - | chr6_1:20972101-20972120 | Msa0879180:CDS | 40.0% | |
| AAGAGAGTAATTGAAGGTGG+AGG | + | chr6_1:20972271-20972290 | None:intergenic | 40.0% | |
| AGAAAGTTGAGAATTGCGAG+AGG | - | chr6_1:20972450-20972469 | Msa0879180:intron | 40.0% | |
| ATTTATGGTTAAGCAGGGGT+TGG | - | chr6_1:20972633-20972652 | Msa0879180:intron | 40.0% | |
| TGGTATCATTTGCAAGCTTG+GGG | + | chr6_1:20972792-20972811 | None:intergenic | 40.0% | |
| CAGCTTTCTAATCAGTAGAG+TGG | - | chr6_1:20973151-20973170 | Msa0879180:intron | 40.0% | |
| GACAAGAAACTTGAGCAGAT+TGG | - | chr6_1:20973190-20973209 | Msa0879180:intron | 40.0% | |
| AAACTTGAGCAGATTGGTAC+CGG | - | chr6_1:20973196-20973215 | Msa0879180:intron | 40.0% | |
| TGTGAGATCAAGAGTTTCAC+CGG | + | chr6_1:20973218-20973237 | None:intergenic | 40.0% | |
| AACTCTTGATCTCACAGGAA+AGG | - | chr6_1:20973222-20973241 | Msa0879180:intron | 40.0% | |
| !! | TTTTGCTGTCTACCTTTTCG+CGG | - | chr6_1:20973273-20973292 | Msa0879180:intron | 40.0% |
| CGTAAACGTCAGTCATTAGA+TGG | - | chr6_1:20973342-20973361 | Msa0879180:intron | 40.0% | |
| ! | TTGGACCCGAAAACATTTTC+TGG | + | chr6_1:20973470-20973489 | None:intergenic | 40.0% |
| !!! | AAATGTTTTCGGGTCCAAGA+TGG | - | chr6_1:20973472-20973491 | Msa0879180:CDS | 40.0% |
| !!! | AATGTTTTCGGGTCCAAGAT+GGG | - | chr6_1:20973473-20973492 | Msa0879180:CDS | 40.0% |
| !! | AGGTGTTACTACCAATCCTG+CGG | - | chr6_1:20972228-20972247 | Msa0879180:intron | 45.0% |
| TGAGAAGAATACCGCAGGAT+TGG | + | chr6_1:20972242-20972261 | None:intergenic | 45.0% | |
| !! | AAGACACAGAAAGTGCCTAC+TGG | - | chr6_1:20972668-20972687 | Msa0879180:intron | 45.0% |
| !! | AGACACAGAAAGTGCCTACT+GGG | - | chr6_1:20972669-20972688 | Msa0879180:intron | 45.0% |
| !! | AGAAAGTGCCTACTGGGAAT+TGG | - | chr6_1:20972675-20972694 | Msa0879180:intron | 45.0% |
| CTTCACAACCAATTCCCAGT+AGG | + | chr6_1:20972686-20972705 | None:intergenic | 45.0% | |
| CTACTGGGAATTGGTTGTGA+AGG | - | chr6_1:20972684-20972703 | Msa0879180:CDS | 45.0% | |
| GGTATCATTTGCAAGCTTGG+GGG | + | chr6_1:20972791-20972810 | None:intergenic | 45.0% | |
| TGCTGCCTCAATTGTTCCTT+TGG | + | chr6_1:20972812-20972831 | None:intergenic | 45.0% | |
| GGTGAAACTCTTGATCTCAC+AGG | - | chr6_1:20973217-20973236 | Msa0879180:intron | 45.0% | |
| ! | CAGCAAAAGTTAAGGGCACA+GGG | + | chr6_1:20973261-20973280 | None:intergenic | 45.0% |
| ! | ACAGCAAAAGTTAAGGGCAC+AGG | + | chr6_1:20973262-20973281 | None:intergenic | 45.0% |
| !! | TTTGCTGTCTACCTTTTCGC+GGG | - | chr6_1:20973274-20973293 | Msa0879180:intron | 45.0% |
| ! | GTAATGGTTGTTTCAGGCTG+CGG | - | chr6_1:20973413-20973432 | Msa0879180:CDS | 45.0% |
| !! | AGGTGTTACTACCAATCCTG+CGG | - | chr6_1:20972228-20972247 | Msa0879180:intron | 45.0% |
| TGAGAAGAATACCGCAGGAT+TGG | + | chr6_1:20972242-20972261 | None:intergenic | 45.0% | |
| !! | AAGACACAGAAAGTGCCTAC+TGG | - | chr6_1:20972668-20972687 | Msa0879180:intron | 45.0% |
| !! | AGACACAGAAAGTGCCTACT+GGG | - | chr6_1:20972669-20972688 | Msa0879180:intron | 45.0% |
| !! | AGAAAGTGCCTACTGGGAAT+TGG | - | chr6_1:20972675-20972694 | Msa0879180:intron | 45.0% |
| CTTCACAACCAATTCCCAGT+AGG | + | chr6_1:20972686-20972705 | None:intergenic | 45.0% | |
| CTACTGGGAATTGGTTGTGA+AGG | - | chr6_1:20972684-20972703 | Msa0879180:CDS | 45.0% | |
| GGTATCATTTGCAAGCTTGG+GGG | + | chr6_1:20972791-20972810 | None:intergenic | 45.0% | |
| TGCTGCCTCAATTGTTCCTT+TGG | + | chr6_1:20972812-20972831 | None:intergenic | 45.0% | |
| GGTGAAACTCTTGATCTCAC+AGG | - | chr6_1:20973217-20973236 | Msa0879180:intron | 45.0% | |
| ! | CAGCAAAAGTTAAGGGCACA+GGG | + | chr6_1:20973261-20973280 | None:intergenic | 45.0% |
| ! | ACAGCAAAAGTTAAGGGCAC+AGG | + | chr6_1:20973262-20973281 | None:intergenic | 45.0% |
| !! | TTTGCTGTCTACCTTTTCGC+GGG | - | chr6_1:20973274-20973293 | Msa0879180:intron | 45.0% |
| ! | GTAATGGTTGTTTCAGGCTG+CGG | - | chr6_1:20973413-20973432 | Msa0879180:CDS | 45.0% |
| ! | TCTACCTTTTCGCGGGATTC+AGG | - | chr6_1:20973281-20973300 | Msa0879180:intron | 50.0% |
| ! | TTTTGGCACCTCTCTTCTCC+AGG | + | chr6_1:20973503-20973522 | None:intergenic | 50.0% |
| ! | TCTACCTTTTCGCGGGATTC+AGG | - | chr6_1:20973281-20973300 | Msa0879180:intron | 50.0% |
| ! | TTTTGGCACCTCTCTTCTCC+AGG | + | chr6_1:20973503-20973522 | None:intergenic | 50.0% |
| !! | GGTTAAGCAGGGGTTGGTAG+AGG | - | chr6_1:20972639-20972658 | Msa0879180:intron | 55.0% |
| GCAACCTGAATCCCGCGAAA+AGG | + | chr6_1:20973288-20973307 | None:intergenic | 55.0% | |
| !! | GGTTAAGCAGGGGTTGGTAG+AGG | - | chr6_1:20972639-20972658 | Msa0879180:intron | 55.0% |
| GCAACCTGAATCCCGCGAAA+AGG | + | chr6_1:20973288-20973307 | None:intergenic | 55.0% | |
| !! | AAGCAGGGGTTGGTAGAGGC+AGG | - | chr6_1:20972643-20972662 | Msa0879180:intron | 60.0% |
| TTCTCCAGGCGCTCCCATCT+TGG | + | chr6_1:20973489-20973508 | None:intergenic | 60.0% | |
| !! | AAGCAGGGGTTGGTAGAGGC+AGG | - | chr6_1:20972643-20972662 | Msa0879180:intron | 60.0% |
| TTCTCCAGGCGCTCCCATCT+TGG | + | chr6_1:20973489-20973508 | None:intergenic | 60.0% | |
| !! | TGGGAGCGCCTGGAGAAGAG+AGG | - | chr6_1:20973492-20973511 | Msa0879180:CDS | 65.0% |
| !! | TGGGAGCGCCTGGAGAAGAG+AGG | - | chr6_1:20973492-20973511 | Msa0879180:CDS | 65.0% |
| !! | GGGTCCAAGATGGGAGCGCC+TGG | - | chr6_1:20973482-20973501 | Msa0879180:CDS | 70.0% |
| !! | GGGTCCAAGATGGGAGCGCC+TGG | - | chr6_1:20973482-20973501 | Msa0879180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20972094 | 20973536 | 20972094 | ID=Msa0879180;Name=Msa0879180 |
| chr6_1 | mRNA | 20972094 | 20973536 | 20972094 | ID=Msa0879180-mRNA-1;Parent=Msa0879180;Name=Msa0879180-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|0.66|3|0|162 |
| chr6_1 | exon | 20973401 | 20973536 | 20973401 | ID=Msa0879180-mRNA-1:exon:5731;Parent=Msa0879180-mRNA-1 |
| chr6_1 | exon | 20972682 | 20972965 | 20972682 | ID=Msa0879180-mRNA-1:exon:5730;Parent=Msa0879180-mRNA-1 |
| chr6_1 | exon | 20972094 | 20972159 | 20972094 | ID=Msa0879180-mRNA-1:exon:5729;Parent=Msa0879180-mRNA-1 |
| chr6_1 | CDS | 20973401 | 20973536 | 20973401 | ID=Msa0879180-mRNA-1:cds;Parent=Msa0879180-mRNA-1 |
| chr6_1 | CDS | 20972682 | 20972965 | 20972682 | ID=Msa0879180-mRNA-1:cds;Parent=Msa0879180-mRNA-1 |
| chr6_1 | CDS | 20972094 | 20972159 | 20972094 | ID=Msa0879180-mRNA-1:cds;Parent=Msa0879180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
