Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879260 | XP_013446937.1 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 3.60e-87 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879260 | sp|A0LTY8|TAL_ACIC1 | 41.284 | 109 | 64 | 0 | 43 | 151 | 67 | 175 | 8.80e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879260 | A0A072TTX3 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 1.72e-87 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051790 | Msa0879260 | 0.809747 | 1.624024e-50 | -8.615850e-47 |
| Msa0879180 | Msa0879260 | 0.909794 | 3.838577e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879260 | MtrunA17_Chr8g0385641 | 76.966 | 178 | 12 | 1 | 1 | 149 | 42 | 219 | 3.31e-91 | 271 |
| Msa0879260 | MtrunA17_Chr7g0214741 | 57.396 | 169 | 43 | 1 | 10 | 149 | 79 | 247 | 1.92e-59 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879260 | AT5G13420.1 | 55.030 | 169 | 47 | 1 | 10 | 149 | 74 | 242 | 1.15e-56 | 183 |
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACTTTCATTGTAAAT+TGG | 0.204893 | 6_1:+21215149 | None:intergenic |
| TTAGTCTCATTCATTGCTTC+TGG | 0.240277 | 6_1:-21215686 | Msa0879260:CDS |
| AGCAAAATGTCTTCATAAAA+TGG | 0.254461 | 6_1:-21215057 | Msa0879260:CDS |
| TGCTGCCTCAATTGTTCCTT+TGG | 0.274051 | 6_1:+21215076 | None:intergenic |
| TTGGTATCATTTGCAAGCTT+GGG | 0.282742 | 6_1:+21215095 | None:intergenic |
| TTCTCCAGGCGCTCCCATCT+TGG | 0.309788 | 6_1:+21214397 | None:intergenic |
| TTTGGTATCATTTGCAAGCT+TGG | 0.358958 | 6_1:+21215094 | None:intergenic |
| TGAATCCATACCTTCAATAA+AGG | 0.381226 | 6_1:-21214994 | Msa0879260:CDS |
| GACTTCCTTTATTGAAGGTA+TGG | 0.385008 | 6_1:+21214989 | None:intergenic |
| GAAATGACTTCCTTTATTGA+AGG | 0.409109 | 6_1:+21214984 | None:intergenic |
| AGAAAGTGCCTACTGGGAAT+TGG | 0.431864 | 6_1:-21215210 | Msa0879260:CDS |
| AATGAAAGTGATGGTATTGA+TGG | 0.433706 | 6_1:-21215140 | Msa0879260:CDS |
| ACATGATACTTGCAAACTCT+TGG | 0.445554 | 6_1:-21215174 | Msa0879260:CDS |
| GGGTCCAAGATGGGAGCGCC+TGG | 0.449074 | 6_1:-21214401 | Msa0879260:CDS |
| CGACATAGATTATCATAGTA+AGG | 0.462561 | 6_1:+21215722 | None:intergenic |
| AAGACACAGAAAGTGCCTAC+TGG | 0.479319 | 6_1:-21215217 | Msa0879260:CDS |
| TTCATTGCTTCTGGAATCAA+AGG | 0.488326 | 6_1:-21215677 | Msa0879260:intron |
| AAATGTCTTCATAAAATGGT+TGG | 0.493644 | 6_1:-21215053 | Msa0879260:CDS |
| TGGTATCATTTGCAAGCTTG+GGG | 0.514659 | 6_1:+21215096 | None:intergenic |
| AGACACAGAAAGTGCCTACT+GGG | 0.556923 | 6_1:-21215216 | Msa0879260:CDS |
| CCAATTTACAATGAAAGTGA+TGG | 0.588254 | 6_1:-21215149 | Msa0879260:CDS |
| TGATACCAAAGGAACAATTG+AGG | 0.596805 | 6_1:-21215081 | Msa0879260:CDS |
| TGGGAGCGCCTGGAGAAGAG+AGG | 0.612281 | 6_1:-21214391 | Msa0879260:CDS |
| GGTATCATTTGCAAGCTTGG+GGG | 0.641883 | 6_1:+21215097 | None:intergenic |
| CTACTGGGAATTGGTTGTGA+AGG | 0.645680 | 6_1:-21215201 | Msa0879260:CDS |
| AAGCTTGCAAATGATACCAA+AGG | 0.647015 | 6_1:-21215092 | Msa0879260:CDS |
| CTTCACAACCAATTCCCAGT+AGG | 0.661904 | 6_1:+21215202 | None:intergenic |
| ATGAAAGTGATGGTATTGAT+GGG | 0.670819 | 6_1:-21215139 | Msa0879260:CDS |
| ATAGTAACGCGACATTCACA+AGG | 0.677356 | 6_1:-21215784 | Msa0879260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATACTAATTTAATTTA+TGG | - | chr6_1:21214893-21214912 | Msa0879260:intron | 10.0% |
| !!! | AATGATACTAATTTAATTTA+TGG | - | chr6_1:21214893-21214912 | Msa0879260:intron | 10.0% |
| !!! | GTAATTTTAATATAAACGTT+TGG | + | chr6_1:21215137-21215156 | None:intergenic | 15.0% |
| !!! | GTAATTTTAATATAAACGTT+TGG | + | chr6_1:21215137-21215156 | None:intergenic | 15.0% |
| !!! | AATTTAATTTATGGTTAAGC+AGG | - | chr6_1:21214902-21214921 | Msa0879260:intron | 20.0% |
| !!! | ATTTAATTTATGGTTAAGCA+GGG | - | chr6_1:21214903-21214922 | Msa0879260:intron | 20.0% |
| !! | TATGATTTACAATGTTGTAA+TGG | - | chr6_1:21215674-21215693 | Msa0879260:intron | 20.0% |
| !!! | AATTTAATTTATGGTTAAGC+AGG | - | chr6_1:21214902-21214921 | Msa0879260:intron | 20.0% |
| !!! | ATTTAATTTATGGTTAAGCA+GGG | - | chr6_1:21214903-21214922 | Msa0879260:intron | 20.0% |
| !! | TATGATTTACAATGTTGTAA+TGG | - | chr6_1:21215674-21215693 | Msa0879260:intron | 20.0% |
| !! | GATTTTGCCTTTTGAATTAA+TGG | - | chr6_1:21214580-21214599 | Msa0879260:intron | 25.0% |
| ! | ATGCTTACAATCAGTAATTA+AGG | - | chr6_1:21214669-21214688 | Msa0879260:intron | 25.0% |
| !!! | AAGTGTGTAGTTTTTTTTGA+AGG | - | chr6_1:21214753-21214772 | Msa0879260:intron | 25.0% |
| !!! | GTAGTTTTTTTTGAAGGAAA+AGG | - | chr6_1:21214759-21214778 | Msa0879260:intron | 25.0% |
| !! | TTTAATTTATGGTTAAGCAG+GGG | - | chr6_1:21214904-21214923 | Msa0879260:intron | 25.0% |
| ! | AGCAAAATGTCTTCATAAAA+TGG | - | chr6_1:21215103-21215122 | Msa0879260:CDS | 25.0% |
| ! | AAATGTCTTCATAAAATGGT+TGG | - | chr6_1:21215107-21215126 | Msa0879260:CDS | 25.0% |
| ! | CTATATAAGCATATTGATGT+TGG | + | chr6_1:21215291-21215310 | None:intergenic | 25.0% |
| ! | TAATAACTGCTTCATATGTA+GGG | + | chr6_1:21215345-21215364 | None:intergenic | 25.0% |
| ! | TTAATAACTGCTTCATATGT+AGG | + | chr6_1:21215346-21215365 | None:intergenic | 25.0% |
| !! | GATTTTGCCTTTTGAATTAA+TGG | - | chr6_1:21214580-21214599 | Msa0879260:intron | 25.0% |
| ! | ATGCTTACAATCAGTAATTA+AGG | - | chr6_1:21214669-21214688 | Msa0879260:intron | 25.0% |
| !!! | AAGTGTGTAGTTTTTTTTGA+AGG | - | chr6_1:21214753-21214772 | Msa0879260:intron | 25.0% |
| !!! | GTAGTTTTTTTTGAAGGAAA+AGG | - | chr6_1:21214759-21214778 | Msa0879260:intron | 25.0% |
| !! | TTTAATTTATGGTTAAGCAG+GGG | - | chr6_1:21214904-21214923 | Msa0879260:intron | 25.0% |
| ! | AGCAAAATGTCTTCATAAAA+TGG | - | chr6_1:21215103-21215122 | Msa0879260:CDS | 25.0% |
| ! | AAATGTCTTCATAAAATGGT+TGG | - | chr6_1:21215107-21215126 | Msa0879260:CDS | 25.0% |
| ! | CTATATAAGCATATTGATGT+TGG | + | chr6_1:21215291-21215310 | None:intergenic | 25.0% |
| ! | TAATAACTGCTTCATATGTA+GGG | + | chr6_1:21215345-21215364 | None:intergenic | 25.0% |
| ! | TTAATAACTGCTTCATATGT+AGG | + | chr6_1:21215346-21215365 | None:intergenic | 25.0% |
| CGACATAGATTATCATAGTA+AGG | + | chr6_1:21214441-21214460 | None:intergenic | 30.0% | |
| CTTTCAAAGAGAGTAATTGA+AGG | + | chr6_1:21214552-21214571 | None:intergenic | 30.0% | |
| GTGAAAGCCATTAATTCAAA+AGG | + | chr6_1:21214590-21214609 | None:intergenic | 30.0% | |
| TCTGCAATATGTAAACATTG+TGG | + | chr6_1:21214622-21214641 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAAAAGGTTTG+TGG | - | chr6_1:21214766-21214785 | Msa0879260:intron | 30.0% |
| !! | TTTTGAAGGAAAAGGTTTGT+GGG | - | chr6_1:21214767-21214786 | Msa0879260:intron | 30.0% |
| CCATCACTTTCATTGTAAAT+TGG | + | chr6_1:21215014-21215033 | None:intergenic | 30.0% | |
| CCAATTTACAATGAAAGTGA+TGG | - | chr6_1:21215011-21215030 | Msa0879260:CDS | 30.0% | |
| ! | AATGAAAGTGATGGTATTGA+TGG | - | chr6_1:21215020-21215039 | Msa0879260:CDS | 30.0% |
| !! | ATGAAAGTGATGGTATTGAT+GGG | - | chr6_1:21215021-21215040 | Msa0879260:CDS | 30.0% |
| TGAATCCATACCTTCAATAA+AGG | - | chr6_1:21215166-21215185 | Msa0879260:CDS | 30.0% | |
| GAAATGACTTCCTTTATTGA+AGG | + | chr6_1:21215179-21215198 | None:intergenic | 30.0% | |
| AGCAGTTATTAATGCTTACT+TGG | - | chr6_1:21215354-21215373 | Msa0879260:intron | 30.0% | |
| GTTATTAATGCTTACTTGGA+TGG | - | chr6_1:21215358-21215377 | Msa0879260:intron | 30.0% | |
| ! | AATGTTGTAATGGTTGTTTC+AGG | - | chr6_1:21215684-21215703 | Msa0879260:CDS | 30.0% |
| !! | AAAACATTTTCTGGTAAAGC+TGG | + | chr6_1:21215738-21215757 | None:intergenic | 30.0% |
| ! | GCTTTACCAGAAAATGTTTT+CGG | - | chr6_1:21215738-21215757 | Msa0879260:CDS | 30.0% |
| ! | CTTTACCAGAAAATGTTTTC+GGG | - | chr6_1:21215739-21215758 | Msa0879260:CDS | 30.0% |
| CGACATAGATTATCATAGTA+AGG | + | chr6_1:21214441-21214460 | None:intergenic | 30.0% | |
| CTTTCAAAGAGAGTAATTGA+AGG | + | chr6_1:21214552-21214571 | None:intergenic | 30.0% | |
| GTGAAAGCCATTAATTCAAA+AGG | + | chr6_1:21214590-21214609 | None:intergenic | 30.0% | |
| TCTGCAATATGTAAACATTG+TGG | + | chr6_1:21214622-21214641 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAAAAGGTTTG+TGG | - | chr6_1:21214766-21214785 | Msa0879260:intron | 30.0% |
| !! | TTTTGAAGGAAAAGGTTTGT+GGG | - | chr6_1:21214767-21214786 | Msa0879260:intron | 30.0% |
| CCATCACTTTCATTGTAAAT+TGG | + | chr6_1:21215014-21215033 | None:intergenic | 30.0% | |
| CCAATTTACAATGAAAGTGA+TGG | - | chr6_1:21215011-21215030 | Msa0879260:CDS | 30.0% | |
| ! | AATGAAAGTGATGGTATTGA+TGG | - | chr6_1:21215020-21215039 | Msa0879260:CDS | 30.0% |
| !! | ATGAAAGTGATGGTATTGAT+GGG | - | chr6_1:21215021-21215040 | Msa0879260:CDS | 30.0% |
| TGAATCCATACCTTCAATAA+AGG | - | chr6_1:21215166-21215185 | Msa0879260:CDS | 30.0% | |
| GAAATGACTTCCTTTATTGA+AGG | + | chr6_1:21215179-21215198 | None:intergenic | 30.0% | |
| AGCAGTTATTAATGCTTACT+TGG | - | chr6_1:21215354-21215373 | Msa0879260:intron | 30.0% | |
| GTTATTAATGCTTACTTGGA+TGG | - | chr6_1:21215358-21215377 | Msa0879260:intron | 30.0% | |
| ! | AATGTTGTAATGGTTGTTTC+AGG | - | chr6_1:21215684-21215703 | Msa0879260:CDS | 30.0% |
| !! | AAAACATTTTCTGGTAAAGC+TGG | + | chr6_1:21215738-21215757 | None:intergenic | 30.0% |
| ! | GCTTTACCAGAAAATGTTTT+CGG | - | chr6_1:21215738-21215757 | Msa0879260:CDS | 30.0% |
| ! | CTTTACCAGAAAATGTTTTC+GGG | - | chr6_1:21215739-21215758 | Msa0879260:CDS | 30.0% |
| TTAGTCTCATTCATTGCTTC+TGG | - | chr6_1:21214474-21214493 | Msa0879260:intron | 35.0% | |
| !! | TTCATTGCTTCTGGAATCAA+AGG | - | chr6_1:21214483-21214502 | Msa0879260:intron | 35.0% |
| AAAAATGAGAAGAATACCGC+AGG | + | chr6_1:21214522-21214541 | None:intergenic | 35.0% | |
| TCAAAGAGAGTAATTGAAGG+TGG | + | chr6_1:21214549-21214568 | None:intergenic | 35.0% | |
| GCAATATGTAAACATTGTGG+TGG | + | chr6_1:21214619-21214638 | None:intergenic | 35.0% | |
| ACATGATACTTGCAAACTCT+TGG | - | chr6_1:21214986-21215005 | Msa0879260:CDS | 35.0% | |
| TTGGTATCATTTGCAAGCTT+GGG | + | chr6_1:21215068-21215087 | None:intergenic | 35.0% | |
| TTTGGTATCATTTGCAAGCT+TGG | + | chr6_1:21215069-21215088 | None:intergenic | 35.0% | |
| AAGCTTGCAAATGATACCAA+AGG | - | chr6_1:21215068-21215087 | Msa0879260:CDS | 35.0% | |
| TGATACCAAAGGAACAATTG+AGG | - | chr6_1:21215079-21215098 | Msa0879260:CDS | 35.0% | |
| GACTTCCTTTATTGAAGGTA+TGG | + | chr6_1:21215174-21215193 | None:intergenic | 35.0% | |
| TAGTAACACTGATCTCTCAA+AGG | - | chr6_1:21215393-21215412 | Msa0879260:intron | 35.0% | |
| AGGTAGACAGCAAAAGTTAA+GGG | + | chr6_1:21215545-21215564 | None:intergenic | 35.0% | |
| AAGGTAGACAGCAAAAGTTA+AGG | + | chr6_1:21215546-21215565 | None:intergenic | 35.0% | |
| GTCATTAGATGGAGATCAAT+CGG | - | chr6_1:21215630-21215649 | Msa0879260:intron | 35.0% | |
| TTAGTCTCATTCATTGCTTC+TGG | - | chr6_1:21214474-21214493 | Msa0879260:intron | 35.0% | |
| !! | TTCATTGCTTCTGGAATCAA+AGG | - | chr6_1:21214483-21214502 | Msa0879260:intron | 35.0% |
| AAAAATGAGAAGAATACCGC+AGG | + | chr6_1:21214522-21214541 | None:intergenic | 35.0% | |
| TCAAAGAGAGTAATTGAAGG+TGG | + | chr6_1:21214549-21214568 | None:intergenic | 35.0% | |
| GCAATATGTAAACATTGTGG+TGG | + | chr6_1:21214619-21214638 | None:intergenic | 35.0% | |
| ACATGATACTTGCAAACTCT+TGG | - | chr6_1:21214986-21215005 | Msa0879260:CDS | 35.0% | |
| TTGGTATCATTTGCAAGCTT+GGG | + | chr6_1:21215068-21215087 | None:intergenic | 35.0% | |
| TTTGGTATCATTTGCAAGCT+TGG | + | chr6_1:21215069-21215088 | None:intergenic | 35.0% | |
| AAGCTTGCAAATGATACCAA+AGG | - | chr6_1:21215068-21215087 | Msa0879260:CDS | 35.0% | |
| TGATACCAAAGGAACAATTG+AGG | - | chr6_1:21215079-21215098 | Msa0879260:CDS | 35.0% | |
| GACTTCCTTTATTGAAGGTA+TGG | + | chr6_1:21215174-21215193 | None:intergenic | 35.0% | |
| TAGTAACACTGATCTCTCAA+AGG | - | chr6_1:21215393-21215412 | Msa0879260:intron | 35.0% | |
| AGGTAGACAGCAAAAGTTAA+GGG | + | chr6_1:21215545-21215564 | None:intergenic | 35.0% | |
| AAGGTAGACAGCAAAAGTTA+AGG | + | chr6_1:21215546-21215565 | None:intergenic | 35.0% | |
| GTCATTAGATGGAGATCAAT+CGG | - | chr6_1:21215630-21215649 | Msa0879260:intron | 35.0% | |
| ATAGTAACGCGACATTCACA+AGG | - | chr6_1:21214376-21214395 | Msa0879260:CDS | 40.0% | |
| AAGAGAGTAATTGAAGGTGG+AGG | + | chr6_1:21214546-21214565 | None:intergenic | 40.0% | |
| AGAAAGTTGAGAATTGCGAG+AGG | - | chr6_1:21214725-21214744 | Msa0879260:intron | 40.0% | |
| ATTTATGGTTAAGCAGGGGT+TGG | - | chr6_1:21214908-21214927 | Msa0879260:intron | 40.0% | |
| TGGTATCATTTGCAAGCTTG+GGG | + | chr6_1:21215067-21215086 | None:intergenic | 40.0% | |
| CAGCTTTCTAATCAGTAGAG+TGG | - | chr6_1:21215428-21215447 | Msa0879260:intron | 40.0% | |
| GACAAGAAACTTGAGCAGAT+TGG | - | chr6_1:21215467-21215486 | Msa0879260:intron | 40.0% | |
| AAACTTGAGCAGATTGGTAC+CGG | - | chr6_1:21215473-21215492 | Msa0879260:intron | 40.0% | |
| TGTGAGATCAAGAGTTTCAC+CGG | + | chr6_1:21215495-21215514 | None:intergenic | 40.0% | |
| AACTCTTGATCTCACAGGAA+AGG | - | chr6_1:21215499-21215518 | Msa0879260:intron | 40.0% | |
| !! | TTTTGCTGTCTACCTTTTCG+CGG | - | chr6_1:21215550-21215569 | Msa0879260:intron | 40.0% |
| CGTAAACGTCAGTCATTAGA+TGG | - | chr6_1:21215619-21215638 | Msa0879260:intron | 40.0% | |
| ! | TTGGACCCGAAAACATTTTC+TGG | + | chr6_1:21215747-21215766 | None:intergenic | 40.0% |
| !!! | AAATGTTTTCGGGTCCAAGA+TGG | - | chr6_1:21215749-21215768 | Msa0879260:CDS | 40.0% |
| !!! | AATGTTTTCGGGTCCAAGAT+GGG | - | chr6_1:21215750-21215769 | Msa0879260:CDS | 40.0% |
| ATAGTAACGCGACATTCACA+AGG | - | chr6_1:21214376-21214395 | Msa0879260:CDS | 40.0% | |
| AAGAGAGTAATTGAAGGTGG+AGG | + | chr6_1:21214546-21214565 | None:intergenic | 40.0% | |
| AGAAAGTTGAGAATTGCGAG+AGG | - | chr6_1:21214725-21214744 | Msa0879260:intron | 40.0% | |
| ATTTATGGTTAAGCAGGGGT+TGG | - | chr6_1:21214908-21214927 | Msa0879260:intron | 40.0% | |
| TGGTATCATTTGCAAGCTTG+GGG | + | chr6_1:21215067-21215086 | None:intergenic | 40.0% | |
| CAGCTTTCTAATCAGTAGAG+TGG | - | chr6_1:21215428-21215447 | Msa0879260:intron | 40.0% | |
| GACAAGAAACTTGAGCAGAT+TGG | - | chr6_1:21215467-21215486 | Msa0879260:intron | 40.0% | |
| AAACTTGAGCAGATTGGTAC+CGG | - | chr6_1:21215473-21215492 | Msa0879260:intron | 40.0% | |
| TGTGAGATCAAGAGTTTCAC+CGG | + | chr6_1:21215495-21215514 | None:intergenic | 40.0% | |
| AACTCTTGATCTCACAGGAA+AGG | - | chr6_1:21215499-21215518 | Msa0879260:intron | 40.0% | |
| !! | TTTTGCTGTCTACCTTTTCG+CGG | - | chr6_1:21215550-21215569 | Msa0879260:intron | 40.0% |
| CGTAAACGTCAGTCATTAGA+TGG | - | chr6_1:21215619-21215638 | Msa0879260:intron | 40.0% | |
| ! | TTGGACCCGAAAACATTTTC+TGG | + | chr6_1:21215747-21215766 | None:intergenic | 40.0% |
| !!! | AAATGTTTTCGGGTCCAAGA+TGG | - | chr6_1:21215749-21215768 | Msa0879260:CDS | 40.0% |
| !!! | AATGTTTTCGGGTCCAAGAT+GGG | - | chr6_1:21215750-21215769 | Msa0879260:CDS | 40.0% |
| !! | AGGTGTTACTACCAATCCTG+CGG | - | chr6_1:21214503-21214522 | Msa0879260:intron | 45.0% |
| TGAGAAGAATACCGCAGGAT+TGG | + | chr6_1:21214517-21214536 | None:intergenic | 45.0% | |
| !! | AAGACACAGAAAGTGCCTAC+TGG | - | chr6_1:21214943-21214962 | Msa0879260:intron | 45.0% |
| !! | AGACACAGAAAGTGCCTACT+GGG | - | chr6_1:21214944-21214963 | Msa0879260:intron | 45.0% |
| !! | AGAAAGTGCCTACTGGGAAT+TGG | - | chr6_1:21214950-21214969 | Msa0879260:intron | 45.0% |
| CTTCACAACCAATTCCCAGT+AGG | + | chr6_1:21214961-21214980 | None:intergenic | 45.0% | |
| CTACTGGGAATTGGTTGTGA+AGG | - | chr6_1:21214959-21214978 | Msa0879260:CDS | 45.0% | |
| GGTATCATTTGCAAGCTTGG+GGG | + | chr6_1:21215066-21215085 | None:intergenic | 45.0% | |
| TGCTGCCTCAATTGTTCCTT+TGG | + | chr6_1:21215087-21215106 | None:intergenic | 45.0% | |
| GGTGAAACTCTTGATCTCAC+AGG | - | chr6_1:21215494-21215513 | Msa0879260:intron | 45.0% | |
| ! | CAGCAAAAGTTAAGGGCACA+GGG | + | chr6_1:21215538-21215557 | None:intergenic | 45.0% |
| ! | ACAGCAAAAGTTAAGGGCAC+AGG | + | chr6_1:21215539-21215558 | None:intergenic | 45.0% |
| !! | TTTGCTGTCTACCTTTTCGC+GGG | - | chr6_1:21215551-21215570 | Msa0879260:intron | 45.0% |
| ! | GTAATGGTTGTTTCAGGCTG+CGG | - | chr6_1:21215690-21215709 | Msa0879260:CDS | 45.0% |
| !! | AGGTGTTACTACCAATCCTG+CGG | - | chr6_1:21214503-21214522 | Msa0879260:intron | 45.0% |
| TGAGAAGAATACCGCAGGAT+TGG | + | chr6_1:21214517-21214536 | None:intergenic | 45.0% | |
| !! | AAGACACAGAAAGTGCCTAC+TGG | - | chr6_1:21214943-21214962 | Msa0879260:intron | 45.0% |
| !! | AGACACAGAAAGTGCCTACT+GGG | - | chr6_1:21214944-21214963 | Msa0879260:intron | 45.0% |
| !! | AGAAAGTGCCTACTGGGAAT+TGG | - | chr6_1:21214950-21214969 | Msa0879260:intron | 45.0% |
| CTTCACAACCAATTCCCAGT+AGG | + | chr6_1:21214961-21214980 | None:intergenic | 45.0% | |
| CTACTGGGAATTGGTTGTGA+AGG | - | chr6_1:21214959-21214978 | Msa0879260:CDS | 45.0% | |
| GGTATCATTTGCAAGCTTGG+GGG | + | chr6_1:21215066-21215085 | None:intergenic | 45.0% | |
| TGCTGCCTCAATTGTTCCTT+TGG | + | chr6_1:21215087-21215106 | None:intergenic | 45.0% | |
| GGTGAAACTCTTGATCTCAC+AGG | - | chr6_1:21215494-21215513 | Msa0879260:intron | 45.0% | |
| ! | CAGCAAAAGTTAAGGGCACA+GGG | + | chr6_1:21215538-21215557 | None:intergenic | 45.0% |
| ! | ACAGCAAAAGTTAAGGGCAC+AGG | + | chr6_1:21215539-21215558 | None:intergenic | 45.0% |
| !! | TTTGCTGTCTACCTTTTCGC+GGG | - | chr6_1:21215551-21215570 | Msa0879260:intron | 45.0% |
| ! | GTAATGGTTGTTTCAGGCTG+CGG | - | chr6_1:21215690-21215709 | Msa0879260:CDS | 45.0% |
| ! | TCTACCTTTTCGCGGGATTC+AGG | - | chr6_1:21215558-21215577 | Msa0879260:intron | 50.0% |
| ! | TTTTGGCACCTCTCTTCTCC+AGG | + | chr6_1:21215780-21215799 | None:intergenic | 50.0% |
| ! | TCTACCTTTTCGCGGGATTC+AGG | - | chr6_1:21215558-21215577 | Msa0879260:intron | 50.0% |
| ! | TTTTGGCACCTCTCTTCTCC+AGG | + | chr6_1:21215780-21215799 | None:intergenic | 50.0% |
| !! | GGTTAAGCAGGGGTTGGTAG+AGG | - | chr6_1:21214914-21214933 | Msa0879260:intron | 55.0% |
| GCAACCTGAATCCCGCGAAA+AGG | + | chr6_1:21215565-21215584 | None:intergenic | 55.0% | |
| !! | GGTTAAGCAGGGGTTGGTAG+AGG | - | chr6_1:21214914-21214933 | Msa0879260:intron | 55.0% |
| GCAACCTGAATCCCGCGAAA+AGG | + | chr6_1:21215565-21215584 | None:intergenic | 55.0% | |
| !! | AAGCAGGGGTTGGTAGAGGC+AGG | - | chr6_1:21214918-21214937 | Msa0879260:intron | 60.0% |
| TTCTCCAGGCGCTCCCATCT+TGG | + | chr6_1:21215766-21215785 | None:intergenic | 60.0% | |
| !! | AAGCAGGGGTTGGTAGAGGC+AGG | - | chr6_1:21214918-21214937 | Msa0879260:intron | 60.0% |
| TTCTCCAGGCGCTCCCATCT+TGG | + | chr6_1:21215766-21215785 | None:intergenic | 60.0% | |
| !! | TGGGAGCGCCTGGAGAAGAG+AGG | - | chr6_1:21215769-21215788 | Msa0879260:CDS | 65.0% |
| !! | TGGGAGCGCCTGGAGAAGAG+AGG | - | chr6_1:21215769-21215788 | Msa0879260:CDS | 65.0% |
| !! | GGGTCCAAGATGGGAGCGCC+TGG | - | chr6_1:21215759-21215778 | Msa0879260:CDS | 70.0% |
| !! | GGGTCCAAGATGGGAGCGCC+TGG | - | chr6_1:21215759-21215778 | Msa0879260:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 21214369 | 21215813 | 21214369 | ID=Msa0879260;Name=Msa0879260 |
| chr6_1 | mRNA | 21214369 | 21215813 | 21214369 | ID=Msa0879260-mRNA-1;Parent=Msa0879260;Name=Msa0879260-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|0.66|3|0|162 |
| chr6_1 | exon | 21215678 | 21215813 | 21215678 | ID=Msa0879260-mRNA-1:exon:5770;Parent=Msa0879260-mRNA-1 |
| chr6_1 | exon | 21214959 | 21215242 | 21214959 | ID=Msa0879260-mRNA-1:exon:5769;Parent=Msa0879260-mRNA-1 |
| chr6_1 | exon | 21214369 | 21214434 | 21214369 | ID=Msa0879260-mRNA-1:exon:5768;Parent=Msa0879260-mRNA-1 |
| chr6_1 | CDS | 21215678 | 21215813 | 21215678 | ID=Msa0879260-mRNA-1:cds;Parent=Msa0879260-mRNA-1 |
| chr6_1 | CDS | 21214959 | 21215242 | 21214959 | ID=Msa0879260-mRNA-1:cds;Parent=Msa0879260-mRNA-1 |
| chr6_1 | CDS | 21214369 | 21214434 | 21214369 | ID=Msa0879260-mRNA-1:cds;Parent=Msa0879260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
