AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880430 MtrunA17_Chr8g0386291 99.209 253 2 0 1 253 1 253 0.0 520
Msa0880430 MtrunA17_Chr1g0155361 37.264 212 126 2 37 241 17 228 1.26e-44 151
Msa0880430 MtrunA17_Chr3g0141721 39.378 193 113 2 57 249 42 230 2.05e-40 140
Msa0880430 MtrunA17_Chr5g0404561 33.766 231 137 3 32 250 6 232 7.82e-40 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880430 AT3G48680.1 73.518 253 65 1 3 253 4 256 5.43e-139 391
Msa0880430 AT5G63510.1 80.342 234 35 1 31 253 19 252 6.25e-138 388
Msa0880430 AT5G63510.2 71.648 261 36 2 31 253 19 279 2.05e-130 370
Msa0880430 AT5G66510.1 39.691 194 113 1 56 249 42 231 1.77e-43 148
Msa0880430 AT1G19580.1 39.175 194 114 1 56 249 42 231 1.09e-41 144
Msa0880430 AT1G47260.1 36.041 197 126 0 35 231 21 217 3.05e-40 140
Msa0880430 AT5G66510.2 37.561 205 113 2 56 249 42 242 3.86e-40 140
Msa0880430 AT1G19580.2 39.568 139 84 0 56 194 42 180 5.66e-30 112

Find 107 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGTATGCGGTTCTT+AGG 0.229283 6_1:-27022214 None:intergenic
TCCGTATTCCACAGTATATT+TGG 0.234805 6_1:+27026936 Msa0880430:CDS
ATTTATTGCAACTGCGAGTT+TGG 0.267482 6_1:-27026881 None:intergenic
ATCGAGCCAGAGGTCATTAT+TGG 0.270806 6_1:+27026694 Msa0880430:CDS
GTAACTTTGAGCATCAAAAT+TGG 0.273209 6_1:+27027329 Msa0880430:three_prime_UTR
CGCTGGTCAAGTTCATGTTT+GGG 0.293136 6_1:+27022424 Msa0880430:CDS
TCGCTGGTCAAGTTCATGTT+TGG 0.306862 6_1:+27022423 Msa0880430:CDS
CATCACCGGATCGGGTGAAT+TGG 0.308512 6_1:+27022312 Msa0880430:CDS
TCGAGAGGTATGTGACTATT+GGG 0.332114 6_1:+27026644 Msa0880430:CDS
TGCGAGTTTGGGGATTTCTA+AGG 0.332354 6_1:-27026869 None:intergenic
TTTATTGCAACTGCGAGTTT+GGG 0.333438 6_1:-27026880 None:intergenic
GGATTTCTAAGGTTTCTTCA+TGG 0.334369 6_1:-27026858 None:intergenic
CATTCCATCCGGTGAACTTT+GGG 0.346047 6_1:+27026801 Msa0880430:CDS
CCGGATGGAATGATCCTTCC+TGG 0.357824 6_1:-27026790 None:intergenic
TTGTGCGTGATGCTTTGTTA+TGG 0.360343 6_1:-27022231 None:intergenic
ATCGAGAGGTATGTGACTAT+TGG 0.363480 6_1:+27026643 Msa0880430:CDS
TCTAGATATGACGCACAAAA+AGG 0.371246 6_1:-27027199 None:intergenic
CGATAGTGCAGGATCTTAAC+AGG 0.372381 6_1:-27026675 None:intergenic
TTCTGTTGCAAAAGCGCGTT+CGG 0.384026 6_1:-27022270 None:intergenic
TTTGGGATGGTGCTTCTGTT+TGG 0.394146 6_1:+27022441 Msa0880430:CDS
TCATTCCATCCGGTGAACTT+TGG 0.397159 6_1:+27026800 Msa0880430:CDS
GAGAAATTTAAGAAGTCCTT+GGG 0.405985 6_1:+27026964 Msa0880430:CDS
TGCGGTTCTTAGGGCTTTGT+TGG 0.406364 6_1:-27022204 None:intergenic
GATTTCTAAGGTTTCTTCAT+GGG 0.407398 6_1:-27026857 None:intergenic
TGAGAAATTTAAGAAGTCCT+TGG 0.422995 6_1:+27026963 Msa0880430:CDS
GCCGCTTGGTCTTCTCCTAC+AGG 0.443345 6_1:+27022545 Msa0880430:CDS
ATCACCGGATCGGGTGAATT+GGG 0.444045 6_1:+27022313 Msa0880430:CDS
CATATCTAGATGGGAAATAG+TGG 0.449007 6_1:+27027212 Msa0880430:three_prime_UTR
TCCAAATATACTGTGGAATA+CGG 0.450864 6_1:-27026937 None:intergenic
TATGGAGTATGCGGTTCTTA+GGG 0.453815 6_1:-27022213 None:intergenic
GATGGTGCTTCTGTTTGGCC+TGG 0.458679 6_1:+27022446 Msa0880430:CDS
GGTCAAAGTCCTCACAAACT+TGG 0.460378 6_1:-27026836 None:intergenic
GCAGGATCTTAACAGGCTAT+AGG 0.461030 6_1:-27026668 None:intergenic
ACACACTCAATTCTTGAAGC+TGG 0.465246 6_1:+27026754 Msa0880430:CDS
TATTACTCCATCACCGGATC+GGG 0.470199 6_1:+27022304 Msa0880430:CDS
CAAACTTGTATACCCATTTG+CGG 0.471230 6_1:+27022064 Msa0880430:five_prime_UTR
TGACCAGCGAGAACCACATT+AGG 0.477831 6_1:-27022410 None:intergenic
GCTGTGTTCTTCATGCCGCT+TGG 0.481268 6_1:+27022531 Msa0880430:CDS
CTCTCGATTGAAGTCTCAGC+TGG 0.481721 6_1:-27026628 None:intergenic
TCGAGCCAGAGGTCATTATT+GGG 0.484978 6_1:+27026695 Msa0880430:CDS
AAAGTCCTCACAAACTTGGC+TGG 0.485332 6_1:-27026832 None:intergenic
TAATCCCAATTCACCCGATC+CGG 0.490619 6_1:-27022317 None:intergenic
TGCTGCCCAATAATGACCTC+TGG 0.493950 6_1:-27026700 None:intergenic
TTTGTGCGTCATATCTAGAT+GGG 0.503688 6_1:+27027203 Msa0880430:three_prime_UTR
TTCGGAAGCCACTGACCCAA+TGG 0.512785 6_1:-27022362 None:intergenic
AGGGGTACATAAAAGATTGT+GGG 0.515538 6_1:+27022014 None:intergenic
CAATTCACCCGATCCGGTGA+TGG 0.515623 6_1:-27022311 None:intergenic
GCACCTAATGTGGTTCTCGC+TGG 0.515982 6_1:+27022407 Msa0880430:CDS
CCTCATGGAAGGTTCTATAG+TGG 0.516544 6_1:+27026729 Msa0880430:CDS
CACACTCAATTCTTGAAGCT+GGG 0.520187 6_1:+27026755 Msa0880430:CDS
TACTCTTGTGTGTTGCTCAA+AGG 0.521274 6_1:+27027251 Msa0880430:three_prime_UTR
TAAGCATCAACAGCTATCTT+CGG 0.524311 6_1:-27022380 None:intergenic
CTATTACTCCATCACCGGAT+CGG 0.535138 6_1:+27022303 Msa0880430:CDS
TCTTGTGTGTTGCTCAAAGG+AGG 0.535781 6_1:+27027254 Msa0880430:three_prime_UTR
GACCTCTGGCTCGATAGTGC+AGG 0.537220 6_1:-27026686 None:intergenic
AATGTGGTGGAGCTAGGAAA+TGG 0.537683 6_1:-27022127 None:intergenic
TCGGAAGCCACTGACCCAAT+GGG 0.538002 6_1:-27022361 None:intergenic
TGGCCTGGTTGTGTTCTTCG+TGG 0.540218 6_1:+27022461 Msa0880430:CDS
TGGGCAGCATTCCATCCTCA+TGG 0.542081 6_1:+27026714 Msa0880430:CDS
TATAGAACCTTCCATGAGGA+TGG 0.545483 6_1:-27026725 None:intergenic
CCATCCGGTGAACTTTGGGC+AGG 0.548069 6_1:+27026805 Msa0880430:CDS
ACAGAGGAAGATAATCCCAT+TGG 0.551861 6_1:+27022346 Msa0880430:CDS
GTATTCCACAGTATATTTGG+AGG 0.552628 6_1:+27026939 Msa0880430:CDS
TAGGGGTACATAAAAGATTG+TGG 0.554589 6_1:+27022013 None:intergenic
CAGAGGAAGATAATCCCATT+GGG 0.563728 6_1:+27022347 Msa0880430:CDS
AGATAATCCCATTGGGTCAG+TGG 0.566753 6_1:+27022354 Msa0880430:CDS
TCACCACGAAGAACACAACC+AGG 0.574612 6_1:-27022464 None:intergenic
CCAGGAAGGATCATTCCATC+CGG 0.575893 6_1:+27026790 Msa0880430:CDS
AATGACAATGTGGTGGAGCT+AGG 0.577322 6_1:-27022133 None:intergenic
GGTCAAGTTCATGTTTGGGA+TGG 0.578896 6_1:+27022428 Msa0880430:CDS
GATCTGAATAAGATTAGTGT+TGG 0.581880 6_1:+27022485 Msa0880430:CDS
GCATTATTATTCACAGCCGT+AGG 0.582111 6_1:-27027302 None:intergenic
GAAATCTATTACTCCATCAC+CGG 0.585979 6_1:+27022298 Msa0880430:CDS
TGAGCATCAAAATTGGCTTG+AGG 0.589291 6_1:+27027336 Msa0880430:three_prime_UTR
ATTACCTGCCCAAAGTTCAC+CGG 0.593632 6_1:-27026809 None:intergenic
TGCTTACGTGGCACCTAATG+TGG 0.594957 6_1:+27022397 Msa0880430:CDS
CGATTGAAGTCTCAGCTGGA+AGG 0.598226 6_1:-27026624 None:intergenic
AAACTCATCGAAGAAACCTA+CGG 0.599693 6_1:+27027286 Msa0880430:three_prime_UTR
TTATTGCAACTGCGAGTTTG+GGG 0.604356 6_1:-27026879 None:intergenic
CAGCATTCCATCCTCATGGA+AGG 0.605878 6_1:+27026718 Msa0880430:CDS
GGAGCTAGGAAATGGAAGAG+TGG 0.606166 6_1:-27022119 None:intergenic
GGTCAGTAGTTCCACCAGGA+AGG 0.611863 6_1:+27026776 Msa0880430:CDS
AATATACTGTGGAATACGGA+AGG 0.614961 6_1:-27026933 None:intergenic
ATATCTAGATGGGAAATAGT+GGG 0.617555 6_1:+27027213 Msa0880430:three_prime_UTR
CGTTCGGATGAAGCTAGTTG+CGG 0.617624 6_1:-27022254 None:intergenic
ATTGGGATTATAGAGGACAG+AGG 0.617723 6_1:+27022330 Msa0880430:CDS
TGGAATACGGAAGGAACTCA+TGG 0.622332 6_1:-27026924 None:intergenic
GATAGCTGTTGATGCTTACG+TGG 0.629649 6_1:+27022385 Msa0880430:CDS
GTAATCCAGCCAAGTTTGTG+AGG 0.634420 6_1:+27026827 Msa0880430:CDS
GGGGTACATAAAAGATTGTG+GGG 0.638703 6_1:+27022015 None:intergenic
CTCAACCTCCAAATATACTG+TGG 0.643535 6_1:-27026944 None:intergenic
CCTGCCCAAAGTTCACCGGA+TGG 0.644025 6_1:-27026805 None:intergenic
CGAGAGGTATGTGACTATTG+GGG 0.644184 6_1:+27026645 Msa0880430:CDS
ATGCTTTGTTATGGAGTATG+CGG 0.647285 6_1:-27022222 None:intergenic
ATCCTGCACTATCGAGCCAG+AGG 0.649233 6_1:+27026684 Msa0880430:CDS
TACTTTCAGAAGCAGCACAA+AGG 0.651887 6_1:-27027100 None:intergenic
CGGGTGAATTGGGATTATAG+AGG 0.652482 6_1:+27022323 Msa0880430:CDS
GCTGGGTCAGTAGTTCCACC+AGG 0.658261 6_1:+27026772 Msa0880430:CDS
CAGCTGAGACTTCAATCGAG+AGG 0.666782 6_1:+27026629 Msa0880430:CDS
GCATCAAACAGAAATACCCA+AGG 0.677187 6_1:-27026980 None:intergenic
CGATTGTAATGACAATGTGG+TGG 0.691561 6_1:-27022140 None:intergenic
GATGGAATGATCCTTCCTGG+TGG 0.692913 6_1:-27026787 None:intergenic
ACACAAGAGTAATTGCAACA+AGG 0.709340 6_1:-27027239 None:intergenic
ACCTGTAGGAGAAGACCAAG+CGG 0.712136 6_1:-27022546 None:intergenic
GGGTACATAAAAGATTGTGG+GGG 0.715124 6_1:+27022016 None:intergenic
CCACTATAGAACCTTCCATG+AGG 0.731073 6_1:-27026729 None:intergenic
GAACGATTGTAATGACAATG+TGG 0.731461 6_1:-27022143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGTTTAAAACAAAT+TGG - chr6_1:27025924-27025943 None:intergenic 10.0%
!! AGATGATTAATATTATATGA+TGG - chr6_1:27022964-27022983 None:intergenic 15.0%
!!! ATTTATTGTTCCATTTTTTT+TGG + chr6_1:27023047-27023066 Msa0880430:intron 15.0%
!!! TTTATTGTTCCATTTTTTTT+GGG + chr6_1:27023048-27023067 Msa0880430:intron 15.0%
!!! TATTTTGATAAATGAAAACA+TGG - chr6_1:27023504-27023523 None:intergenic 15.0%
!! ATCAAAATATACAATCAAAA+TGG + chr6_1:27023515-27023534 Msa0880430:intron 15.0%
!! TCAAAATATACAATCAAAAT+GGG + chr6_1:27023516-27023535 Msa0880430:intron 15.0%
!!! AAATTTGTTTATATTGATTG+AGG + chr6_1:27023638-27023657 Msa0880430:intron 15.0%
!! TCTTGAATGAAAATATTTAT+GGG + chr6_1:27023674-27023693 Msa0880430:intron 15.0%
!!! ATGATGATATACATAAATTT+TGG + chr6_1:27024200-27024219 Msa0880430:intron 15.0%
!!! TGATGATATACATAAATTTT+GGG + chr6_1:27024201-27024220 Msa0880430:intron 15.0%
!! AATTGTTAACATAAAAGTTA+GGG - chr6_1:27024579-27024598 None:intergenic 15.0%
!! AAATTGTTAACATAAAAGTT+AGG - chr6_1:27024580-27024599 None:intergenic 15.0%
!! AATTTAAGAGAAAGATATAA+TGG - chr6_1:27024790-27024809 None:intergenic 15.0%
!!! TGAAAGTATATTCTTAAAAA+AGG - chr6_1:27025241-27025260 None:intergenic 15.0%
!! TAGAAAATGAAAATAGAAAA+TGG + chr6_1:27025741-27025760 Msa0880430:intron 15.0%
!!! AAAGAATTTTGTTTATGCTT+TGG + chr6_1:27022619-27022638 Msa0880430:intron 20.0%
!! TGTGAAATGTATAAATTACT+AGG + chr6_1:27022715-27022734 Msa0880430:intron 20.0%
!! ATGTATAAATTACTAGGATT+TGG + chr6_1:27022721-27022740 Msa0880430:intron 20.0%
!! TGTATAAATTACTAGGATTT+GGG + chr6_1:27022722-27022741 Msa0880430:intron 20.0%
!!! TGTTTTCATAAAGAATGATA+AGG + chr6_1:27023158-27023177 Msa0880430:intron 20.0%
!!! GTTTTCATAAAGAATGATAA+GGG + chr6_1:27023159-27023178 Msa0880430:intron 20.0%
!! AAGATTTGAAGAAATTATCT+AGG + chr6_1:27023235-27023254 Msa0880430:intron 20.0%
!! ATAAATGAAAACATGGTTAT+CGG - chr6_1:27023497-27023516 None:intergenic 20.0%
!!! ATAATTTTTCATCATCATCA+TGG - chr6_1:27023561-27023580 None:intergenic 20.0%
!!! TGATGATGATGAAAAATTAT+TGG + chr6_1:27023561-27023580 Msa0880430:intron 20.0%
!! GTCTTGAATGAAAATATTTA+TGG + chr6_1:27023673-27023692 Msa0880430:intron 20.0%
!!! ATTTTAAAAACGAAAAGACT+TGG + chr6_1:27023710-27023729 Msa0880430:intron 20.0%
!!! TAATTTTTAAAAATCAAGGG+AGG - chr6_1:27023801-27023820 None:intergenic 20.0%
!!! ACAACTCTTATTTTTCATTT+CGG - chr6_1:27024275-27024294 None:intergenic 20.0%
!! TGTTCAGTTAAAAACTAAAA+GGG + chr6_1:27024506-27024525 Msa0880430:intron 20.0%
!! TAACTAAATAGAAATAGTTG+GGG - chr6_1:27025032-27025051 None:intergenic 20.0%
!! CTAACTAAATAGAAATAGTT+GGG - chr6_1:27025033-27025052 None:intergenic 20.0%
!! TCTAACTAAATAGAAATAGT+TGG - chr6_1:27025034-27025053 None:intergenic 20.0%
!! TATTCTAAATAGAAATAGCT+AGG - chr6_1:27025146-27025165 None:intergenic 20.0%
!! GATCATAAATGTTTACTTAA+AGG - chr6_1:27025210-27025229 None:intergenic 20.0%
!!! ATTCATTTTTTAAAGAGAGA+TGG + chr6_1:27025523-27025542 Msa0880430:intron 20.0%
!!! TTCATTTTTTAAAGAGAGAT+GGG + chr6_1:27025524-27025543 Msa0880430:intron 20.0%
!! ATTACTTCATAGTAACTATT+TGG - chr6_1:27025825-27025844 None:intergenic 20.0%
!! TAAATCCATAGACTATAATA+AGG + chr6_1:27025986-27026005 Msa0880430:intron 20.0%
!! TAATTCCTTATTATAGTCTA+TGG - chr6_1:27025994-27026013 None:intergenic 20.0%
!! TATGTACATATTAACTATGT+GGG - chr6_1:27026036-27026055 None:intergenic 20.0%
!! TTATGTACATATTAACTATG+TGG - chr6_1:27026037-27026056 None:intergenic 20.0%
!!! AGGATTATGCTATTTAATTA+AGG - chr6_1:27026207-27026226 None:intergenic 20.0%
!! ACATTCAAAGACAATATATA+GGG - chr6_1:27026378-27026397 None:intergenic 20.0%
!! TACATTCAAAGACAATATAT+AGG - chr6_1:27026379-27026398 None:intergenic 20.0%
!! TAAACAACTAAAAAGAAGTA+TGG - chr6_1:27026472-27026491 None:intergenic 20.0%
! TACATATGCTAAGAGTAATA+GGG - chr6_1:27022782-27022801 None:intergenic 25.0%
! ATACATATGCTAAGAGTAAT+AGG - chr6_1:27022783-27022802 None:intergenic 25.0%
! TTAATAAGTAGCATGTTCTA+AGG - chr6_1:27022995-27023014 None:intergenic 25.0%
! AAAACAATCTCTCAAATAAG+GGG - chr6_1:27023144-27023163 None:intergenic 25.0%
! GAAAACAATCTCTCAAATAA+GGG - chr6_1:27023145-27023164 None:intergenic 25.0%
! TGAAAACAATCTCTCAAATA+AGG - chr6_1:27023146-27023165 None:intergenic 25.0%
! CATTGTATGCATAAAAAAGA+TGG - chr6_1:27023432-27023451 None:intergenic 25.0%
!!! CATCTTTTTTATGCATACAA+TGG + chr6_1:27023430-27023449 Msa0880430:intron 25.0%
! TCAAAATGGGATATTTATCT+AGG + chr6_1:27023529-27023548 Msa0880430:intron 25.0%
! ACTAACAATGTTACATGATA+GGG - chr6_1:27023868-27023887 None:intergenic 25.0%
! CATTAAGCCATTAAATCAAA+TGG - chr6_1:27023912-27023931 None:intergenic 25.0%
! TGTTAATTGAAAAACCTAGA+AGG + chr6_1:27024111-27024130 Msa0880430:intron 25.0%
!!! CAACTCTTATTTTTCATTTC+GGG - chr6_1:27024274-27024293 None:intergenic 25.0%
! GTGTTCAGTTAAAAACTAAA+AGG + chr6_1:27024505-27024524 Msa0880430:intron 25.0%
! TTAAAAACTAAAAGGGTTGT+TGG + chr6_1:27024513-27024532 Msa0880430:intron 25.0%
! AATACTTTATATTAGTGTGC+TGG + chr6_1:27024672-27024691 Msa0880430:intron 25.0%
!!! GCTAAAGTTGATTTTGAAAT+CGG - chr6_1:27024764-27024783 None:intergenic 25.0%
!!! TTTTTCGGTTCATTTAAGTT+TGG + chr6_1:27024974-27024993 Msa0880430:intron 25.0%
!!! AGTTTCTTAGATCTGTTTTT+CGG + chr6_1:27025072-27025091 Msa0880430:intron 25.0%
! AAGAATAACATGATTAACTC+TGG - chr6_1:27025365-27025384 None:intergenic 25.0%
!!! TGTCTTATTTGAAAATCTGA+TGG + chr6_1:27026275-27026294 Msa0880430:intron 25.0%
! CTTTGAATGTATATCAGTAT+TGG + chr6_1:27026388-27026407 Msa0880430:intron 25.0%
!! GTATATCAGTATTGGAAATT+AGG + chr6_1:27026396-27026415 Msa0880430:intron 25.0%
! TTAGGATGTGATATTCATTA+TGG + chr6_1:27026414-27026433 Msa0880430:intron 25.0%
!! AGATCTTTGAAAAATGAACA+TGG + chr6_1:27026531-27026550 Msa0880430:intron 25.0%
!! GATCTTTGAAAAATGAACAT+GGG + chr6_1:27026532-27026551 Msa0880430:intron 25.0%
! TGAGAGAGAAATGAGTTTTT+GGG - chr6_1:27022090-27022109 None:intergenic 30.0%
! ATGAGAGAGAAATGAGTTTT+TGG - chr6_1:27022091-27022110 None:intergenic 30.0%
GATCTGAATAAGATTAGTGT+TGG + chr6_1:27022485-27022504 Msa0880430:CDS 30.0%
! TGGTTTTTGTTCTAATGTTC+AGG + chr6_1:27022505-27022524 Msa0880430:CDS 30.0%
AAAAACAAAACCTAACCTGT+AGG - chr6_1:27022563-27022582 None:intergenic 30.0%
!!! TCATTCGTTTGTTTTGTTGA+TGG + chr6_1:27022592-27022611 Msa0880430:intron 30.0%
!!! CATTCGTTTGTTTTGTTGAT+GGG + chr6_1:27022593-27022612 Msa0880430:intron 30.0%
! AGCTTTTGTAAAATCACAGT+GGG - chr6_1:27022822-27022841 None:intergenic 30.0%
! TAGCTTTTGTAAAATCACAG+TGG - chr6_1:27022823-27022842 None:intergenic 30.0%
!!! TTCCATTTTTTTTGGGAGTT+TGG + chr6_1:27023055-27023074 Msa0880430:intron 30.0%
TTCCAAACTCCCAAAAAAAA+TGG - chr6_1:27023060-27023079 None:intergenic 30.0%
! TAAAAACGAAAAGACTTGGT+TGG + chr6_1:27023714-27023733 Msa0880430:intron 30.0%
CTAACAATGTTACATGATAG+GGG - chr6_1:27023867-27023886 None:intergenic 30.0%
CACTAACAATGTTACATGAT+AGG - chr6_1:27023869-27023888 None:intergenic 30.0%
AGCCATTAAATCAAATGGTA+GGG - chr6_1:27023907-27023926 None:intergenic 30.0%
AAGCCATTAAATCAAATGGT+AGG - chr6_1:27023908-27023927 None:intergenic 30.0%
TCAAGCTAGAATTTCAATAG+AGG - chr6_1:27023945-27023964 None:intergenic 30.0%
!! TTCTCTTGCTTTTACATCTT+GGG - chr6_1:27024088-27024107 None:intergenic 30.0%
! ACATAAATTTTGGGCTAAGT+AGG + chr6_1:27024210-27024229 Msa0880430:intron 30.0%
! AGAGATTAGCTACCATTATT+TGG - chr6_1:27024431-27024450 None:intergenic 30.0%
TAAAATTCTTGTAGTGACCA+AGG + chr6_1:27024450-27024469 Msa0880430:intron 30.0%
AAAATTCTTGTAGTGACCAA+GGG + chr6_1:27024451-27024470 Msa0880430:intron 30.0%
AAACTAACAGTGATAGATGA+CGG + chr6_1:27024475-27024494 Msa0880430:intron 30.0%
!!! AGTTTCTTAGAGCTGTTTTT+CGG + chr6_1:27024959-27024978 Msa0880430:intron 30.0%
GTGATGTAGAAATAAATTGC+TGG - chr6_1:27025501-27025520 None:intergenic 30.0%
TTGATTACTTCACTTTGTGA+AGG + chr6_1:27025585-27025604 Msa0880430:intron 30.0%
TATTACTTCTCAGATGATGT+GGG + chr6_1:27025608-27025627 Msa0880430:intron 30.0%
TAGACTCTTGAAATGAACAA+CGG + chr6_1:27025664-27025683 Msa0880430:intron 30.0%
TTGAAGTCTTCCACTATTAT+TGG + chr6_1:27025845-27025864 Msa0880430:intron 30.0%
AAAATCTGATGGTAACACAT+TGG + chr6_1:27026286-27026305 Msa0880430:intron 30.0%
AAATCTGATGGTAACACATT+GGG + chr6_1:27026287-27026306 Msa0880430:intron 30.0%
AAAGATCTCAAGAGTAAAGT+TGG - chr6_1:27026519-27026538 None:intergenic 30.0%
!! GATTTCTAAGGTTTCTTCAT+GGG - chr6_1:27026860-27026879 None:intergenic 30.0%
TCCAAATATACTGTGGAATA+CGG - chr6_1:27026940-27026959 None:intergenic 30.0%
TGAGAAATTTAAGAAGTCCT+TGG + chr6_1:27026963-27026982 Msa0880430:CDS 30.0%
GAGAAATTTAAGAAGTCCTT+GGG + chr6_1:27026964-27026983 Msa0880430:CDS 30.0%
ATATCTAGATGGGAAATAGT+GGG + chr6_1:27027213-27027232 Msa0880430:three_prime_UTR 30.0%
GTAACTTTGAGCATCAAAAT+TGG + chr6_1:27027329-27027348 Msa0880430:three_prime_UTR 30.0%
CAAACTTGTATACCCATTTG+CGG + chr6_1:27022064-27022083 Msa0880430:five_prime_UTR 35.0%
GAACGATTGTAATGACAATG+TGG - chr6_1:27022146-27022165 None:intergenic 35.0%
! ATGCTTTGTTATGGAGTATG+CGG - chr6_1:27022225-27022244 None:intergenic 35.0%
GAAATCTATTACTCCATCAC+CGG + chr6_1:27022298-27022317 Msa0880430:CDS 35.0%
TAAGCATCAACAGCTATCTT+CGG - chr6_1:27022383-27022402 None:intergenic 35.0%
!! CTTTGGAACATTGTGAAATG+TGG + chr6_1:27022636-27022655 Msa0880430:intron 35.0%
! TTGCATTCTAAGAGTATGCT+TGG - chr6_1:27022910-27022929 None:intergenic 35.0%
!!! TTTTTTGGGAGTTTGGAACT+TGG + chr6_1:27023062-27023081 Msa0880430:intron 35.0%
TCTTCAAATCTTCCTCATGT+TGG - chr6_1:27023227-27023246 None:intergenic 35.0%
CAGTTCAGTTTCTCAAAGAT+CGG - chr6_1:27023282-27023301 None:intergenic 35.0%
ACTGTGCTACAAACATAGTT+CGG + chr6_1:27023357-27023376 Msa0880430:intron 35.0%
ATGTAACATTGTTAGTGCTC+TGG + chr6_1:27023872-27023891 Msa0880430:intron 35.0%
! CTCCCTACCATTTGATTTAA+TGG + chr6_1:27023902-27023921 Msa0880430:intron 35.0%
ATCCATAAACCCAATTCAAG+AGG + chr6_1:27023973-27023992 Msa0880430:intron 35.0%
TTCCTCTTGAATTGGGTTTA+TGG - chr6_1:27023978-27023997 None:intergenic 35.0%
ATTCCTCTTCCTCTTGAATT+GGG - chr6_1:27023985-27024004 None:intergenic 35.0%
!! TCTCTTGCTTTTACATCTTG+GGG - chr6_1:27024087-27024106 None:intergenic 35.0%
!! CTTCTCTTGCTTTTACATCT+TGG - chr6_1:27024089-27024108 None:intergenic 35.0%
TCTTTCAATTCACTCCTTCT+AGG - chr6_1:27024128-27024147 None:intergenic 35.0%
AGAAGGAGTGAATTGAAAGA+AGG + chr6_1:27024128-27024147 Msa0880430:intron 35.0%
AAATGCTTGAACACTACTTG+CGG + chr6_1:27024170-27024189 Msa0880430:intron 35.0%
AAATTCTTGTAGTGACCAAG+GGG + chr6_1:27024452-27024471 Msa0880430:intron 35.0%
AACTAACAGTGATAGATGAC+GGG + chr6_1:27024476-27024495 Msa0880430:intron 35.0%
! TGCTATTTAAGAAGACCTCA+AGG + chr6_1:27024536-27024555 Msa0880430:intron 35.0%
ATTTAAGAAGACCTCAAGGA+AGG + chr6_1:27024540-27024559 Msa0880430:intron 35.0%
ACTTTATATTAGTGTGCTGG+TGG + chr6_1:27024675-27024694 Msa0880430:intron 35.0%
!!! AGTTGATTTTGAAATCGGAG+AGG - chr6_1:27024759-27024778 None:intergenic 35.0%
TAAATTTGCAAAAGACGCTG+TGG + chr6_1:27024804-27024823 Msa0880430:intron 35.0%
TTTATAGAACCGAACTGACT+GGG - chr6_1:27024890-27024909 None:intergenic 35.0%
!!! GTAGCTCATTTTTTTGGTTC+AGG - chr6_1:27024929-27024948 None:intergenic 35.0%
!!! GGAACTGTAGCTCATTTTTT+TGG - chr6_1:27024935-27024954 None:intergenic 35.0%
!! AACAGCTCTAAGAAACTGAA+CGG - chr6_1:27024956-27024975 None:intergenic 35.0%
!! TTAGATCTGTTTTTCGGTTC+AGG + chr6_1:27025078-27025097 Msa0880430:intron 35.0%
!! TTTTTCGGTTCAGGTAAGTT+CGG + chr6_1:27025087-27025106 Msa0880430:intron 35.0%
ACCATGGTACTGTATTTGTT+GGG + chr6_1:27025409-27025428 Msa0880430:intron 35.0%
!! AAGCGTTGATAAGCAACTAA+AGG - chr6_1:27025440-27025459 None:intergenic 35.0%
! AATTGCTGGCTATCTACAAA+AGG - chr6_1:27025487-27025506 None:intergenic 35.0%
TTTAAAGAGAGATGGGAAAG+TGG + chr6_1:27025531-27025550 Msa0880430:intron 35.0%
TTAAAGAGAGATGGGAAAGT+GGG + chr6_1:27025532-27025551 Msa0880430:intron 35.0%
GTATTACTTCTCAGATGATG+TGG + chr6_1:27025607-27025626 Msa0880430:intron 35.0%
GCAAAACAGACCAATAATAG+TGG - chr6_1:27025858-27025877 None:intergenic 35.0%
!! AAAAAGTACTCTCTGATGAC+TGG + chr6_1:27026055-27026074 Msa0880430:intron 35.0%
! GACTTATTACAGGCACTTTT+TGG + chr6_1:27026091-27026110 Msa0880430:intron 35.0%
! AAGCTTTATCCAACTAAGTG+GGG - chr6_1:27026157-27026176 None:intergenic 35.0%
! CAAGCTTTATCCAACTAAGT+GGG - chr6_1:27026158-27026177 None:intergenic 35.0%
AATCTGATGGTAACACATTG+GGG + chr6_1:27026288-27026307 Msa0880430:intron 35.0%
CAATATATAGGGAACTGCTT+TGG - chr6_1:27026367-27026386 None:intergenic 35.0%
GGATGTGATATTCATTATGG+AGG + chr6_1:27026417-27026436 Msa0880430:intron 35.0%
TATGCATTCTTCTGCAAAAC+AGG + chr6_1:27026601-27026620 Msa0880430:intron 35.0%
!! GGATTTCTAAGGTTTCTTCA+TGG - chr6_1:27026861-27026880 None:intergenic 35.0%
TTTATTGCAACTGCGAGTTT+GGG - chr6_1:27026883-27026902 None:intergenic 35.0%
ATTTATTGCAACTGCGAGTT+TGG - chr6_1:27026884-27026903 None:intergenic 35.0%
AATATACTGTGGAATACGGA+AGG - chr6_1:27026936-27026955 None:intergenic 35.0%
TCCGTATTCCACAGTATATT+TGG + chr6_1:27026936-27026955 Msa0880430:CDS 35.0%
GTATTCCACAGTATATTTGG+AGG + chr6_1:27026939-27026958 Msa0880430:CDS 35.0%
! TAGCTTGACTTTTGCTTGTA+AGG + chr6_1:27027040-27027059 Msa0880430:three_prime_UTR 35.0%
TCTAGATATGACGCACAAAA+AGG - chr6_1:27027202-27027221 None:intergenic 35.0%
! TTTTGTGCGTCATATCTAGA+TGG + chr6_1:27027202-27027221 Msa0880430:three_prime_UTR 35.0%
TTTGTGCGTCATATCTAGAT+GGG + chr6_1:27027203-27027222 Msa0880430:three_prime_UTR 35.0%
CATATCTAGATGGGAAATAG+TGG + chr6_1:27027212-27027231 Msa0880430:three_prime_UTR 35.0%
ACACAAGAGTAATTGCAACA+AGG - chr6_1:27027242-27027261 None:intergenic 35.0%
AAACTCATCGAAGAAACCTA+CGG + chr6_1:27027286-27027305 Msa0880430:three_prime_UTR 35.0%
CGATTGTAATGACAATGTGG+TGG - chr6_1:27022143-27022162 None:intergenic 40.0%
TTCTCTCTCTCTCTCTCTAA+TGG + chr6_1:27022163-27022182 Msa0880430:exon 40.0%
TATGGAGTATGCGGTTCTTA+GGG - chr6_1:27022216-27022235 None:intergenic 40.0%
TTATGGAGTATGCGGTTCTT+AGG - chr6_1:27022217-27022236 None:intergenic 40.0%
! TTGTGCGTGATGCTTTGTTA+TGG - chr6_1:27022234-27022253 None:intergenic 40.0%
ATTGGGATTATAGAGGACAG+AGG + chr6_1:27022330-27022349 Msa0880430:CDS 40.0%
ACAGAGGAAGATAATCCCAT+TGG + chr6_1:27022346-27022365 Msa0880430:CDS 40.0%
CAGAGGAAGATAATCCCATT+GGG + chr6_1:27022347-27022366 Msa0880430:CDS 40.0%
GCATATGTATGCCAGAATCA+CGG + chr6_1:27022793-27022812 Msa0880430:intron 40.0%
AGTGATTATGCAGGAAGCTA+AGG - chr6_1:27022850-27022869 None:intergenic 40.0%
! TTTGGAACTTGGAACATGGA+AGG + chr6_1:27023073-27023092 Msa0880430:intron 40.0%
TTGGAACTTGGAACATGGAA+GGG + chr6_1:27023074-27023093 Msa0880430:intron 40.0%
! GGTTCAGTTAGGACTTTTGA+AGG - chr6_1:27023261-27023280 None:intergenic 40.0%
! TCTCAAAGATCGGTTCAGTT+AGG - chr6_1:27023272-27023291 None:intergenic 40.0%
ACAATGTTACATGATAGGGG+AGG - chr6_1:27023864-27023883 None:intergenic 40.0%
AAACCCAATTCAAGAGGAAG+AGG + chr6_1:27023979-27023998 Msa0880430:intron 40.0%
GATTCCTCTTCCTCTTGAAT+TGG - chr6_1:27023986-27024005 None:intergenic 40.0%
AGGAGTGAATTGAAAGAAGG+TGG + chr6_1:27024131-27024150 Msa0880430:intron 40.0%
! AGGTAGTGGTAGCCAAATAA+TGG + chr6_1:27024416-27024435 Msa0880430:intron 40.0%
! TATCACTGTTAGTTTCCCCT+TGG - chr6_1:27024470-27024489 None:intergenic 40.0%
AATTACACTCACCTTCCTTG+AGG - chr6_1:27024554-27024573 None:intergenic 40.0%
ATCGGAGAGGTTTATTGTTG+TGG - chr6_1:27024746-27024765 None:intergenic 40.0%
!! TTTTGTTTGCCCAGTCAGTT+CGG + chr6_1:27024878-27024897 Msa0880430:intron 40.0%
GTTTATAGAACCGAACTGAC+TGG - chr6_1:27024891-27024910 None:intergenic 40.0%
AGCTAGGTGTGTTCATAGTT+GGG - chr6_1:27025130-27025149 None:intergenic 40.0%
TAGCTAGGTGTGTTCATAGT+TGG - chr6_1:27025131-27025150 None:intergenic 40.0%
ATCTCATGATGCATTCTCCT+TGG + chr6_1:27025261-27025280 Msa0880430:intron 40.0%
AGCATAAACTAATCCGTCCA+AGG - chr6_1:27025281-27025300 None:intergenic 40.0%
!! ACATGATTAACTCTGGAGTC+TGG - chr6_1:27025358-27025377 None:intergenic 40.0%
CAACAAATACAGTACCATGG+TGG - chr6_1:27025410-27025429 None:intergenic 40.0%
CACCATGGTACTGTATTTGT+TGG + chr6_1:27025408-27025427 Msa0880430:intron 40.0%
! CCATGGTACTGTATTTGTTG+GGG + chr6_1:27025410-27025429 Msa0880430:intron 40.0%
TAAAGAGAGATGGGAAAGTG+GGG + chr6_1:27025533-27025552 Msa0880430:intron 40.0%
TTTATCCAACTAAGTGGGGT+CGG - chr6_1:27026153-27026172 None:intergenic 40.0%
! CCAAGCTTTATCCAACTAAG+TGG - chr6_1:27026159-27026178 None:intergenic 40.0%
CCACTTAGTTGGATAAAGCT+TGG + chr6_1:27026156-27026175 Msa0880430:intron 40.0%
ATACGATCAAGCAGGTATCA+GGG - chr6_1:27026329-27026348 None:intergenic 40.0%
! ATCGAGAGGTATGTGACTAT+TGG + chr6_1:27026643-27026662 Msa0880430:CDS 40.0%
! TCGAGAGGTATGTGACTATT+GGG + chr6_1:27026644-27026663 Msa0880430:CDS 40.0%
TATAGAACCTTCCATGAGGA+TGG - chr6_1:27026728-27026747 None:intergenic 40.0%
ACACACTCAATTCTTGAAGC+TGG + chr6_1:27026754-27026773 Msa0880430:CDS 40.0%
CACACTCAATTCTTGAAGCT+GGG + chr6_1:27026755-27026774 Msa0880430:CDS 40.0%
TTATTGCAACTGCGAGTTTG+GGG - chr6_1:27026882-27026901 None:intergenic 40.0%
CTCAACCTCCAAATATACTG+TGG - chr6_1:27026947-27026966 None:intergenic 40.0%
GCATCAAACAGAAATACCCA+AGG - chr6_1:27026983-27027002 None:intergenic 40.0%
TACTTTCAGAAGCAGCACAA+AGG - chr6_1:27027103-27027122 None:intergenic 40.0%
! TACTCTTGTGTGTTGCTCAA+AGG + chr6_1:27027251-27027270 Msa0880430:three_prime_UTR 40.0%
GCATTATTATTCACAGCCGT+AGG - chr6_1:27027305-27027324 None:intergenic 40.0%
!! TGAGCATCAAAATTGGCTTG+AGG + chr6_1:27027336-27027355 Msa0880430:three_prime_UTR 40.0%
!! TGAGTTTTTGGGCCGCAAAT+GGG - chr6_1:27022079-27022098 None:intergenic 45.0%
!! ATGAGTTTTTGGGCCGCAAA+TGG - chr6_1:27022080-27022099 None:intergenic 45.0%
! AATGTGGTGGAGCTAGGAAA+TGG - chr6_1:27022130-27022149 None:intergenic 45.0%
! AATGACAATGTGGTGGAGCT+AGG - chr6_1:27022136-27022155 None:intergenic 45.0%
! TTCTGTTGCAAAAGCGCGTT+CGG - chr6_1:27022273-27022292 None:intergenic 45.0%
CTATTACTCCATCACCGGAT+CGG + chr6_1:27022303-27022322 Msa0880430:CDS 45.0%
TATTACTCCATCACCGGATC+GGG + chr6_1:27022304-27022323 Msa0880430:CDS 45.0%
TAATCCCAATTCACCCGATC+CGG - chr6_1:27022320-27022339 None:intergenic 45.0%
CGGGTGAATTGGGATTATAG+AGG + chr6_1:27022323-27022342 Msa0880430:CDS 45.0%
AGATAATCCCATTGGGTCAG+TGG + chr6_1:27022354-27022373 Msa0880430:CDS 45.0%
GATAGCTGTTGATGCTTACG+TGG + chr6_1:27022385-27022404 Msa0880430:CDS 45.0%
TCGCTGGTCAAGTTCATGTT+TGG + chr6_1:27022423-27022442 Msa0880430:CDS 45.0%
CGCTGGTCAAGTTCATGTTT+GGG + chr6_1:27022424-27022443 Msa0880430:CDS 45.0%
GGTCAAGTTCATGTTTGGGA+TGG + chr6_1:27022428-27022447 Msa0880430:CDS 45.0%
! TTTGGGATGGTGCTTCTGTT+TGG + chr6_1:27022441-27022460 Msa0880430:CDS 45.0%
! TTGGTCTTCTCCTACAGGTT+AGG + chr6_1:27022550-27022569 Msa0880430:intron 45.0%
AGCTTCCTGCATAATCACTG+TGG + chr6_1:27022851-27022870 Msa0880430:intron 45.0%
GCTTCCTGCATAATCACTGT+GGG + chr6_1:27022852-27022871 Msa0880430:intron 45.0%
TTCACCCACAGTGATTATGC+AGG - chr6_1:27022859-27022878 None:intergenic 45.0%
GAGTATGCTTGGTATCACTG+TGG - chr6_1:27022899-27022918 None:intergenic 45.0%
! GGAGTTTGGAACTTGGAACA+TGG + chr6_1:27023069-27023088 Msa0880430:intron 45.0%
AACTTGGAACATGGAAGGGA+GGG + chr6_1:27023078-27023097 Msa0880430:intron 45.0%
!! GAGGGTACTATACCAACATG+AGG + chr6_1:27023212-27023231 Msa0880430:intron 45.0%
CATGAAAGCAGGGAACTTTG+AGG - chr6_1:27023474-27023493 None:intergenic 45.0%
TGGTTATCGGCATGAAAGCA+GGG - chr6_1:27023484-27023503 None:intergenic 45.0%
ATGGTTATCGGCATGAAAGC+AGG - chr6_1:27023485-27023504 None:intergenic 45.0%
AGAGGAAGAGGAATCAACAG+AGG + chr6_1:27023991-27024010 Msa0880430:intron 45.0%
TATTTGGCTACCACTACCTG+CGG - chr6_1:27024415-27024434 None:intergenic 45.0%
!! TAACAGTGATAGATGACGGG+AGG + chr6_1:27024479-27024498 Msa0880430:intron 45.0%
TGGGCAAACAAAACAGCAAC+AGG - chr6_1:27024871-27024890 None:intergenic 45.0%
! TAGTTGGGGTGTTCACAGTT+GGG - chr6_1:27025018-27025037 None:intergenic 45.0%
! ATAGTTGGGGTGTTCACAGT+TGG - chr6_1:27025019-27025038 None:intergenic 45.0%
CATGATGCATTCTCCTTGGA+CGG + chr6_1:27025265-27025284 Msa0880430:intron 45.0%
!! CATGGTGGCTTCTAAAGCAT+GGG - chr6_1:27025395-27025414 None:intergenic 45.0%
CCCCAACAAATACAGTACCA+TGG - chr6_1:27025413-27025432 None:intergenic 45.0%
! GAAGCACTCTGTTCTGTTGT+TGG + chr6_1:27025792-27025811 Msa0880430:intron 45.0%
! TGGTCTGTTTTGCTTGCATG+AGG + chr6_1:27025865-27025884 Msa0880430:intron 45.0%
ACGCAGAAGGTTACAAGATG+AGG - chr6_1:27025894-27025913 None:intergenic 45.0%
AATTGGAAGAGAGACGCAGA+AGG - chr6_1:27025907-27025926 None:intergenic 45.0%
! GGTGGTGGTTGACTTATTAC+AGG + chr6_1:27026081-27026100 Msa0880430:intron 45.0%
CATAATCCTCCATTGCTGAG+AGG + chr6_1:27026218-27026237 Msa0880430:intron 45.0%
CATACGATCAAGCAGGTATC+AGG - chr6_1:27026330-27026349 None:intergenic 45.0%
AGACTTGCATACGATCAAGC+AGG - chr6_1:27026337-27026356 None:intergenic 45.0%
!!! TGGAGGTGTTTTCTGTAGAG+TGG + chr6_1:27026434-27026453 Msa0880430:intron 45.0%
! CGAGAGGTATGTGACTATTG+GGG + chr6_1:27026645-27026664 Msa0880430:CDS 45.0%
GCAGGATCTTAACAGGCTAT+AGG - chr6_1:27026671-27026690 None:intergenic 45.0%
CGATAGTGCAGGATCTTAAC+AGG - chr6_1:27026678-27026697 None:intergenic 45.0%
ATCGAGCCAGAGGTCATTAT+TGG + chr6_1:27026694-27026713 Msa0880430:CDS 45.0%
TCGAGCCAGAGGTCATTATT+GGG + chr6_1:27026695-27026714 Msa0880430:CDS 45.0%
CCACTATAGAACCTTCCATG+AGG - chr6_1:27026732-27026751 None:intergenic 45.0%
CCTCATGGAAGGTTCTATAG+TGG + chr6_1:27026729-27026748 Msa0880430:CDS 45.0%
TCATTCCATCCGGTGAACTT+TGG + chr6_1:27026800-27026819 Msa0880430:CDS 45.0%
CATTCCATCCGGTGAACTTT+GGG + chr6_1:27026801-27026820 Msa0880430:CDS 45.0%
ATTACCTGCCCAAAGTTCAC+CGG - chr6_1:27026812-27026831 None:intergenic 45.0%
GTAATCCAGCCAAGTTTGTG+AGG + chr6_1:27026827-27026846 Msa0880430:CDS 45.0%
AAAGTCCTCACAAACTTGGC+TGG - chr6_1:27026835-27026854 None:intergenic 45.0%
GGTCAAAGTCCTCACAAACT+TGG - chr6_1:27026839-27026858 None:intergenic 45.0%
TGCGAGTTTGGGGATTTCTA+AGG - chr6_1:27026872-27026891 None:intergenic 45.0%
TGGAATACGGAAGGAACTCA+TGG - chr6_1:27026927-27026946 None:intergenic 45.0%
! TCTTGTGTGTTGCTCAAAGG+AGG + chr6_1:27027254-27027273 Msa0880430:three_prime_UTR 45.0%
!!! TTTATATATTTTTAATTATG+AGG + chr6_1:27023193-27023212 Msa0880430:intron 5.0%
!!! TTATATATTTTTAATTATGA+GGG + chr6_1:27023194-27023213 Msa0880430:intron 5.0%
!!! AAATTATTATTTTAACTTTT+AGG + chr6_1:27023761-27023780 Msa0880430:intron 5.0%
!!! AATTATTATTTTAACTTTTA+GGG + chr6_1:27023762-27023781 Msa0880430:intron 5.0%
!!! TAATAATTTTTAAAAATCAA+GGG - chr6_1:27023804-27023823 None:intergenic 5.0%
!!! ATAATAATTTTTAAAAATCA+AGG - chr6_1:27023805-27023824 None:intergenic 5.0%
GGAGCTAGGAAATGGAAGAG+TGG - chr6_1:27022122-27022141 None:intergenic 50.0%
! TGCGGTTCTTAGGGCTTTGT+TGG - chr6_1:27022207-27022226 None:intergenic 50.0%
CGTTCGGATGAAGCTAGTTG+CGG - chr6_1:27022257-27022276 None:intergenic 50.0%
ATCACCGGATCGGGTGAATT+GGG + chr6_1:27022313-27022332 Msa0880430:CDS 50.0%
TGCTTACGTGGCACCTAATG+TGG + chr6_1:27022397-27022416 Msa0880430:CDS 50.0%
TGACCAGCGAGAACCACATT+AGG - chr6_1:27022413-27022432 None:intergenic 50.0%
TCACCACGAAGAACACAACC+AGG - chr6_1:27022467-27022486 None:intergenic 50.0%
ACCTGTAGGAGAAGACCAAG+CGG - chr6_1:27022549-27022568 None:intergenic 50.0%
CTGTGGGTGAATCGTGATTC+TGG + chr6_1:27022868-27022887 Msa0880430:intron 50.0%
GAACTTGGAACATGGAAGGG+AGG + chr6_1:27023077-27023096 Msa0880430:intron 50.0%
AACATGGAAGGGAGGGCTTT+GGG + chr6_1:27023085-27023104 Msa0880430:intron 50.0%
!! TAGGGGAGGTGTTTGTCACA+GGG - chr6_1:27023850-27023869 None:intergenic 50.0%
!! ATAGGGGAGGTGTTTGTCAC+AGG - chr6_1:27023851-27023870 None:intergenic 50.0%
TAGGCGTGATGAGCGTAGTA+TGG + chr6_1:27024229-27024248 Msa0880430:intron 50.0%
AGGCGTGATGAGCGTAGTAT+GGG + chr6_1:27024230-27024249 Msa0880430:intron 50.0%
AGTATGGGCGATGAGGGAAA+CGG + chr6_1:27024245-27024264 Msa0880430:intron 50.0%
GAGTTAACTACCGCAGGTAG+TGG + chr6_1:27024402-27024421 Msa0880430:intron 50.0%
TGCAAAAGACGCTGTGGTGA+CGG + chr6_1:27024810-27024829 Msa0880430:intron 50.0%
GTGACAAACTGACGAGAGCT+TGG + chr6_1:27024840-27024859 Msa0880430:intron 50.0%
!!! TTTTTGGTTCAGGTGCGCTG+TGG - chr6_1:27024919-27024938 None:intergenic 50.0%
ATCTCTTGATGCTGAGCCTC+TGG + chr6_1:27025325-27025344 Msa0880430:intron 50.0%
!! TGGCTTCTAAAGCATGGGAG+TGG - chr6_1:27025390-27025409 None:intergenic 50.0%
!! CCATGGTGGCTTCTAAAGCA+TGG - chr6_1:27025396-27025415 None:intergenic 50.0%
!! CCATGCTTTAGAAGCCACCA+TGG + chr6_1:27025393-27025412 Msa0880430:intron 50.0%
GTACTCTCTGATGACTGGTG+TGG + chr6_1:27026060-27026079 Msa0880430:intron 50.0%
AATCCTCCATTGCTGAGAGG+AGG + chr6_1:27026221-27026240 Msa0880430:intron 50.0%
TTCACACCTCCTCTCAGCAA+TGG - chr6_1:27026230-27026249 None:intergenic 50.0%
GATGGTAACACATTGGGGCA+AGG + chr6_1:27026293-27026312 Msa0880430:intron 50.0%
CATTGGGGCAAGGAAAGTAG+TGG + chr6_1:27026303-27026322 Msa0880430:intron 50.0%
CGATTGAAGTCTCAGCTGGA+AGG - chr6_1:27026627-27026646 None:intergenic 50.0%
CTCTCGATTGAAGTCTCAGC+TGG - chr6_1:27026631-27026650 None:intergenic 50.0%
CAGCTGAGACTTCAATCGAG+AGG + chr6_1:27026629-27026648 Msa0880430:CDS 50.0%
TGCTGCCCAATAATGACCTC+TGG - chr6_1:27026703-27026722 None:intergenic 50.0%
CAGCATTCCATCCTCATGGA+AGG + chr6_1:27026718-27026737 Msa0880430:CDS 50.0%
GATGGAATGATCCTTCCTGG+TGG - chr6_1:27026790-27026809 None:intergenic 50.0%
CCAGGAAGGATCATTCCATC+CGG + chr6_1:27026790-27026809 Msa0880430:CDS 50.0%
CAATTCACCCGATCCGGTGA+TGG - chr6_1:27022314-27022333 None:intergenic 55.0%
CATCACCGGATCGGGTGAAT+TGG + chr6_1:27022312-27022331 Msa0880430:CDS 55.0%
TCGGAAGCCACTGACCCAAT+GGG - chr6_1:27022364-27022383 None:intergenic 55.0%
TTCGGAAGCCACTGACCCAA+TGG - chr6_1:27022365-27022384 None:intergenic 55.0%
GCACCTAATGTGGTTCTCGC+TGG + chr6_1:27022407-27022426 Msa0880430:CDS 55.0%
GATGGTGCTTCTGTTTGGCC+TGG + chr6_1:27022446-27022465 Msa0880430:CDS 55.0%
TGGCCTGGTTGTGTTCTTCG+TGG + chr6_1:27022461-27022480 Msa0880430:CDS 55.0%
GCTGTGTTCTTCATGCCGCT+TGG + chr6_1:27022531-27022550 Msa0880430:CDS 55.0%
ACAGTGGGTCACCGTGATTC+TGG - chr6_1:27022807-27022826 None:intergenic 55.0%
GAACATGGAAGGGAGGGCTT+TGG + chr6_1:27023084-27023103 Msa0880430:intron 55.0%
ACATGGAAGGGAGGGCTTTG+GGG + chr6_1:27023086-27023105 Msa0880430:intron 55.0%
! CTTTGGGGGAAGGGATGAGA+GGG + chr6_1:27023101-27023120 Msa0880430:intron 55.0%
TGAGCGTAGTATGGGCGATG+AGG + chr6_1:27024238-27024257 Msa0880430:intron 55.0%
GAGCGTAGTATGGGCGATGA+GGG + chr6_1:27024239-27024258 Msa0880430:intron 55.0%
GTATGGGCGATGAGGGAAAC+GGG + chr6_1:27024246-27024265 Msa0880430:intron 55.0%
AGCAGCGAGTTAACTACCGC+AGG + chr6_1:27024396-27024415 Msa0880430:intron 55.0%
GGAGTCTGGCATTCTACCAG+AGG - chr6_1:27025344-27025363 None:intergenic 55.0%
CTCTCTGATGACTGGTGTGG+TGG + chr6_1:27026063-27026082 Msa0880430:intron 55.0%
TCTGATGACTGGTGTGGTGG+TGG + chr6_1:27026066-27026085 Msa0880430:intron 55.0%
ACACCTCCTCTCAGCAATGG+AGG - chr6_1:27026227-27026246 None:intergenic 55.0%
TAGGGAACTGCTTTGGCTGC+TGG - chr6_1:27026360-27026379 None:intergenic 55.0%
ATCCTGCACTATCGAGCCAG+AGG + chr6_1:27026684-27026703 Msa0880430:CDS 55.0%
TGGGCAGCATTCCATCCTCA+TGG + chr6_1:27026714-27026733 Msa0880430:CDS 55.0%
GGTCAGTAGTTCCACCAGGA+AGG + chr6_1:27026776-27026795 Msa0880430:CDS 55.0%
CCGGATGGAATGATCCTTCC+TGG - chr6_1:27026793-27026812 None:intergenic 55.0%
! GCCGCTTGGTCTTCTCCTAC+AGG + chr6_1:27022545-27022564 Msa0880430:CDS 60.0%
! CATGGAAGGGAGGGCTTTGG+GGG + chr6_1:27023087-27023106 Msa0880430:intron 60.0%
!! AAGGGAGGGCTTTGGGGGAA+GGG + chr6_1:27023092-27023111 Msa0880430:intron 60.0%
!! GCTTTGGGGGAAGGGATGAG+AGG + chr6_1:27023100-27023119 Msa0880430:intron 60.0%
GTTCAGGTGCGCTGTGGTTC+AGG - chr6_1:27024913-27024932 None:intergenic 60.0%
GAGAGATGGGAAAGTGGGGC+TGG + chr6_1:27025537-27025556 Msa0880430:intron 60.0%
GCTAGCCGACCCCACTTAGT+TGG + chr6_1:27026145-27026164 Msa0880430:intron 60.0%
! GACCTCTGGCTCGATAGTGC+AGG - chr6_1:27026689-27026708 None:intergenic 60.0%
GCTGGGTCAGTAGTTCCACC+AGG + chr6_1:27026772-27026791 Msa0880430:CDS 60.0%
CCTGCCCAAAGTTCACCGGA+TGG - chr6_1:27026808-27026827 None:intergenic 60.0%
CCATCCGGTGAACTTTGGGC+AGG + chr6_1:27026805-27026824 Msa0880430:CDS 60.0%
!! GAAGGGAGGGCTTTGGGGGA+AGG + chr6_1:27023091-27023110 Msa0880430:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27022024 27027409 27022024 ID=Msa0880430;Name=Msa0880430
chr6_1 mRNA 27022024 27027409 27022024 ID=Msa0880430-mRNA-1;Parent=Msa0880430;Name=Msa0880430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=158|1|1|1|1|1|2|410|253
chr6_1 exon 27022024 27022566 27022024 ID=Msa0880430-mRNA-1:exon:6598;Parent=Msa0880430-mRNA-1
chr6_1 exon 27026623 27027409 27026623 ID=Msa0880430-mRNA-1:exon:6599;Parent=Msa0880430-mRNA-1
chr6_1 five_prime_UTR 27022024 27022181 27022024 ID=Msa0880430-mRNA-1:five_prime_utr;Parent=Msa0880430-mRNA-1
chr6_1 CDS 27022182 27022566 27022182 ID=Msa0880430-mRNA-1:cds;Parent=Msa0880430-mRNA-1
chr6_1 CDS 27026623 27026999 27026623 ID=Msa0880430-mRNA-1:cds;Parent=Msa0880430-mRNA-1
chr6_1 three_prime_UTR 27027000 27027409 27027000 ID=Msa0880430-mRNA-1:three_prime_utr;Parent=Msa0880430-mRNA-1
Gene Sequence

>Msa0880430

ATGGCGAATCTAGCACGTTTTACCAACAAAGCCCTAAGAACCGCATACTCCATAACAAAGCATCACGCACAACCGCAACTAGCTTCATCCGAACGCGCTTTTGCAACAGAAGCTGCGAAATCTATTACTCCATCACCGGATCGGGTGAATTGGGATTATAGAGGACAGAGGAAGATAATCCCATTGGGTCAGTGGCTTCCGAAGATAGCTGTTGATGCTTACGTGGCACCTAATGTGGTTCTCGCTGGTCAAGTTCATGTTTGGGATGGTGCTTCTGTTTGGCCTGGTTGTGTTCTTCGTGGTGATCTGAATAAGATTAGTGTTGGTTTTTGTTCTAATGTTCAGGAACGCTGTGTTCTTCATGCCGCTTGGTCTTCTCCTACAGGCCTTCCAGCTGAGACTTCAATCGAGAGGTATGTGACTATTGGGGCCTATAGCCTGTTAAGATCCTGCACTATCGAGCCAGAGGTCATTATTGGGCAGCATTCCATCCTCATGGAAGGTTCTATAGTGGAGACACACTCAATTCTTGAAGCTGGGTCAGTAGTTCCACCAGGAAGGATCATTCCATCCGGTGAACTTTGGGCAGGTAATCCAGCCAAGTTTGTGAGGACTTTGACCCATGAAGAAACCTTAGAAATCCCCAAACTCGCAGTTGCAATAAATGATTTAAGCAAAGATCATTACCATGAGTTCCTTCCGTATTCCACAGTATATTTGGAGGTTGAGAAATTTAAGAAGTCCTTGGGTATTTCTGTTTGA
Protein sequence

>Msa0880430

MANLARFTNKALRTAYSITKHHAQPQLASSERAFATEAAKSITPSPDRVNWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVHVWDGASVWPGCVLRGDLNKISVGFCSNVQERCVLHAAWSSPTGLPAETSIERYVTIGAYSLLRSCTIEPEVIIGQHSILMEGSIVETHSILEAGSVVPPGRIIPSGELWAGNPAKFVRTLTHEETLEIPKLAVAINDLSKDHYHEFLPYSTVYLEVEKFKKSLGISV*