Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880540 | XP_003595389.1 | 92.617 | 149 | 9 | 1 | 1 | 149 | 44 | 190 | 6.21e-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880540 | sp|Q9C5K8|TIF3B_ARATH | 54.237 | 118 | 42 | 5 | 15 | 128 | 57 | 166 | 6.46e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880540 | A2Q3Z0 | 92.617 | 149 | 9 | 1 | 1 | 149 | 44 | 190 | 2.97e-94 | 281 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0880540 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0880540 | Msa1238310 | 0.812637 | 3.834798e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880540 | MtrunA17_Chr2g0302041 | 92.617 | 149 | 9 | 1 | 1 | 149 | 44 | 190 | 5.71e-98 | 281 |
| Msa0880540 | MtrunA17_Chr4g0069721 | 58.594 | 128 | 45 | 3 | 1 | 125 | 31 | 153 | 2.86e-42 | 138 |
| Msa0880540 | MtrunA17_Chr5g0399851 | 34.400 | 125 | 51 | 4 | 14 | 128 | 20 | 123 | 7.32e-16 | 70.1 |
| Msa0880540 | MtrunA17_Chr2g0301131 | 31.250 | 128 | 65 | 3 | 15 | 125 | 112 | 233 | 1.92e-14 | 68.6 |
| Msa0880540 | MtrunA17_Chr4g0070271 | 32.231 | 121 | 45 | 4 | 7 | 125 | 91 | 176 | 2.43e-12 | 62.0 |
| Msa0880540 | MtrunA17_Chr5g0399881 | 29.825 | 114 | 63 | 2 | 15 | 128 | 44 | 140 | 2.88e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880540 | AT5G20900.1 | 54.237 | 118 | 42 | 5 | 15 | 128 | 57 | 166 | 6.57e-31 | 110 |
| Msa0880540 | AT3G43440.1 | 38.760 | 129 | 53 | 4 | 14 | 140 | 130 | 234 | 2.42e-15 | 70.9 |
| Msa0880540 | AT3G43440.1 | 37.736 | 106 | 36 | 3 | 13 | 118 | 43 | 118 | 8.00e-12 | 61.6 |
| Msa0880540 | AT3G43440.2 | 36.154 | 130 | 57 | 4 | 13 | 140 | 43 | 148 | 1.31e-14 | 67.4 |
| Msa0880540 | AT1G74950.1 | 35.484 | 124 | 51 | 3 | 16 | 125 | 120 | 228 | 1.59e-13 | 66.2 |
| Msa0880540 | AT1G19180.2 | 34.746 | 118 | 61 | 4 | 11 | 125 | 56 | 160 | 1.08e-12 | 63.2 |
| Msa0880540 | AT1G19180.1 | 34.746 | 118 | 61 | 4 | 11 | 125 | 122 | 226 | 2.29e-12 | 63.2 |
| Msa0880540 | AT1G19180.3 | 34.746 | 118 | 61 | 4 | 11 | 125 | 122 | 226 | 2.29e-12 | 63.2 |
| Msa0880540 | AT5G13220.1 | 30.894 | 123 | 63 | 4 | 3 | 125 | 92 | 192 | 3.22e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTACCATCTTCTATAA+TGG | 0.263317 | 6_1:+27301644 | Msa0880540:CDS |
| TTCTTTCACCTGTTCCTTCA+AGG | 0.283604 | 6_1:+27301896 | Msa0880540:CDS |
| ATCTTTATAGATATAGTTGC+TGG | 0.348214 | 6_1:-27302839 | Msa0880550:intron |
| TCCTTCATTGAAACCGAATC+TGG | 0.348326 | 6_1:-27302360 | None:intergenic |
| TTTAGGTCAATGCCAGCATC+TGG | 0.377821 | 6_1:+27301593 | None:intergenic |
| TGCTGACAATTCGCCAGATT+CGG | 0.379407 | 6_1:+27302347 | Msa0880540:CDS |
| AGTGAATGTCTGCGTGCTAT+TGG | 0.383673 | 6_1:-27302132 | None:intergenic |
| CTGCAGATAGAATTCTTTGC+AGG | 0.395317 | 6_1:-27301976 | None:intergenic |
| TGAGTTGTATTAGCAATCAT+TGG | 0.398568 | 6_1:-27301623 | None:intergenic |
| AGCTTACCATCTTCTATAAT+GGG | 0.398580 | 6_1:+27301645 | Msa0880540:CDS |
| ATTGGATTCGTTCCAGATGC+TGG | 0.436562 | 6_1:-27301605 | None:intergenic |
| ACAGGTGAAAGAACGGGAAC+GGG | 0.457084 | 6_1:-27301886 | None:intergenic |
| ATAGAATTCTTTGCAGGAAA+GGG | 0.465810 | 6_1:-27301970 | None:intergenic |
| CTTCTTTGTTTCACTAGACT+TGG | 0.473413 | 6_1:-27301848 | None:intergenic |
| TGATGGAATTCCTGCAGAAA+AGG | 0.477638 | 6_1:+27301682 | Msa0880540:CDS |
| GGGAGTATTTGTATCTATGA+TGG | 0.478209 | 6_1:+27301665 | Msa0880540:CDS |
| GCAGTTCCATGTGGCGAAGA+AGG | 0.484372 | 6_1:-27301919 | None:intergenic |
| TGTGGCGAAGAAGGCCTTGA+AGG | 0.491077 | 6_1:-27301910 | None:intergenic |
| CTGCAAAGAATTCTATCTGC+AGG | 0.491501 | 6_1:+27301977 | Msa0880540:CDS |
| GAAGGAACAGGTGAAAGAAC+GGG | 0.502028 | 6_1:-27301892 | None:intergenic |
| AATACTCCCATTATAGAAGA+TGG | 0.513403 | 6_1:-27301651 | None:intergenic |
| TTCTTCAGAAGCGTCGAGAC+AGG | 0.516859 | 6_1:+27302163 | Msa0880540:CDS |
| GATAGAATTCTTTGCAGGAA+AGG | 0.520134 | 6_1:-27301971 | None:intergenic |
| GAAGAAGGCCTTGAAGGAAC+AGG | 0.524051 | 6_1:-27301904 | None:intergenic |
| TCAAGGCCTTCTTCGCCACA+TGG | 0.540794 | 6_1:+27301913 | Msa0880540:CDS |
| AATTCTATCTGCAGGCTGCA+AGG | 0.555717 | 6_1:+27301985 | Msa0880540:CDS |
| TCTTTATAGATATAGTTGCT+GGG | 0.565207 | 6_1:-27302838 | Msa0880550:intron |
| TGATAATATCGCTTCACCAC+AGG | 0.571663 | 6_1:+27301942 | Msa0880540:CDS |
| TGAAGGAACAGGTGAAAGAA+CGG | 0.572032 | 6_1:-27301893 | None:intergenic |
| AACAGGTGAAAGAACGGGAA+CGG | 0.573715 | 6_1:-27301887 | None:intergenic |
| AACAAAGGTAGCTGACAACA+TGG | 0.591184 | 6_1:+27302311 | Msa0880540:CDS |
| GACAACATGGAGAACAACTT+CGG | 0.616517 | 6_1:+27302324 | Msa0880540:CDS |
| GCAGGAAAGGGATGTGCCTG+TGG | 0.648722 | 6_1:-27301958 | None:intergenic |
| ATATTATCAGCAGTTCCATG+TGG | 0.739266 | 6_1:-27301928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTATTAGTTTTCTTATT+TGG | + | chr6_1:27302230-27302249 | Msa0880540:intron | 15.0% |
| !! | ATATTTCTTGATTGAAATTA+GGG | - | chr6_1:27302632-27302651 | None:intergenic | 15.0% |
| !! | TATATTTCTTGATTGAAATT+AGG | - | chr6_1:27302633-27302652 | None:intergenic | 15.0% |
| !! | AATTTCAATCAAGAAATATA+TGG | + | chr6_1:27302633-27302652 | Msa0880540:intron | 15.0% |
| !!! | ATACTATTAGTTTTCTTATT+TGG | + | chr6_1:27302230-27302249 | Msa0880540:intron | 15.0% |
| !! | ATATTTCTTGATTGAAATTA+GGG | - | chr6_1:27302632-27302651 | None:intergenic | 15.0% |
| !! | TATATTTCTTGATTGAAATT+AGG | - | chr6_1:27302633-27302652 | None:intergenic | 15.0% |
| !! | AATTTCAATCAAGAAATATA+TGG | + | chr6_1:27302633-27302652 | Msa0880540:intron | 15.0% |
| !! | TAGTTGAAGACATAATTAAT+AGG | - | chr6_1:27302021-27302040 | None:intergenic | 20.0% |
| !! | ATAATTTATGTTTGCATTAC+AGG | + | chr6_1:27302253-27302272 | Msa0880540:intron | 20.0% |
| !!! | TAAACTTTGTTTATGTAGTT+TGG | - | chr6_1:27302692-27302711 | None:intergenic | 20.0% |
| !! | TAGTTGAAGACATAATTAAT+AGG | - | chr6_1:27302021-27302040 | None:intergenic | 20.0% |
| !! | ATAATTTATGTTTGCATTAC+AGG | + | chr6_1:27302253-27302272 | Msa0880540:intron | 20.0% |
| !!! | TAAACTTTGTTTATGTAGTT+TGG | - | chr6_1:27302692-27302711 | None:intergenic | 20.0% |
| ! | AATTCTCTCTATATACTAAC+AGG | + | chr6_1:27301792-27301811 | Msa0880540:intron | 25.0% |
| !! | CATACACAAAATTTGAAACA+TGG | - | chr6_1:27302202-27302221 | None:intergenic | 25.0% |
| ! | NNNNNNGATGCAGATATAGT+TGG | - | chr6_1:27302405-27302424 | None:intergenic | 25.0% |
| ! | AATTCTCTCTATATACTAAC+AGG | + | chr6_1:27301792-27301811 | Msa0880540:intron | 25.0% |
| !! | CATACACAAAATTTGAAACA+TGG | - | chr6_1:27302202-27302221 | None:intergenic | 25.0% |
| ! | NNNNNNGATGCAGATATAGT+TGG | - | chr6_1:27302405-27302424 | None:intergenic | 25.0% |
| TGAGTTGTATTAGCAATCAT+TGG | - | chr6_1:27301626-27301645 | None:intergenic | 30.0% | |
| AGCTTACCATCTTCTATAAT+GGG | + | chr6_1:27301645-27301664 | Msa0880540:CDS | 30.0% | |
| AATACTCCCATTATAGAAGA+TGG | - | chr6_1:27301654-27301673 | None:intergenic | 30.0% | |
| ATAGAATTCTTTGCAGGAAA+GGG | - | chr6_1:27301973-27301992 | None:intergenic | 30.0% | |
| ACGAGACATATAAATTATGG+TGG | - | chr6_1:27302080-27302099 | None:intergenic | 30.0% | |
| CACACGAGACATATAAATTA+TGG | - | chr6_1:27302083-27302102 | None:intergenic | 30.0% | |
| CATAATTTATATGTCTCGTG+TGG | + | chr6_1:27302081-27302100 | Msa0880540:intron | 30.0% | |
| TTTATGTTTGCATTACAGGT+TGG | + | chr6_1:27302257-27302276 | Msa0880540:intron | 30.0% | |
| TTATGTTTGCATTACAGGTT+GGG | + | chr6_1:27302258-27302277 | Msa0880540:intron | 30.0% | |
| GGGTATTATTGTCATCTAAA+TGG | + | chr6_1:27302576-27302595 | Msa0880540:intron | 30.0% | |
| ATTATGCACATCATTCAAGT+TGG | + | chr6_1:27302796-27302815 | Msa0880540:intron | 30.0% | |
| TGAGTTGTATTAGCAATCAT+TGG | - | chr6_1:27301626-27301645 | None:intergenic | 30.0% | |
| AGCTTACCATCTTCTATAAT+GGG | + | chr6_1:27301645-27301664 | Msa0880540:CDS | 30.0% | |
| AATACTCCCATTATAGAAGA+TGG | - | chr6_1:27301654-27301673 | None:intergenic | 30.0% | |
| ATAGAATTCTTTGCAGGAAA+GGG | - | chr6_1:27301973-27301992 | None:intergenic | 30.0% | |
| ACGAGACATATAAATTATGG+TGG | - | chr6_1:27302080-27302099 | None:intergenic | 30.0% | |
| CACACGAGACATATAAATTA+TGG | - | chr6_1:27302083-27302102 | None:intergenic | 30.0% | |
| CATAATTTATATGTCTCGTG+TGG | + | chr6_1:27302081-27302100 | Msa0880540:intron | 30.0% | |
| TTTATGTTTGCATTACAGGT+TGG | + | chr6_1:27302257-27302276 | Msa0880540:intron | 30.0% | |
| TTATGTTTGCATTACAGGTT+GGG | + | chr6_1:27302258-27302277 | Msa0880540:intron | 30.0% | |
| GGGTATTATTGTCATCTAAA+TGG | + | chr6_1:27302576-27302595 | Msa0880540:intron | 30.0% | |
| ATTATGCACATCATTCAAGT+TGG | + | chr6_1:27302796-27302815 | Msa0880540:intron | 30.0% | |
| CAGCTTACCATCTTCTATAA+TGG | + | chr6_1:27301644-27301663 | Msa0880540:CDS | 35.0% | |
| !! | GGGAGTATTTGTATCTATGA+TGG | + | chr6_1:27301665-27301684 | Msa0880540:CDS | 35.0% |
| ATTTCGATTGTGACGTAACA+TGG | - | chr6_1:27301765-27301784 | None:intergenic | 35.0% | |
| ! | CTTCTTTGTTTCACTAGACT+TGG | - | chr6_1:27301851-27301870 | None:intergenic | 35.0% |
| ATATTATCAGCAGTTCCATG+TGG | - | chr6_1:27301931-27301950 | None:intergenic | 35.0% | |
| GATAGAATTCTTTGCAGGAA+AGG | - | chr6_1:27301974-27301993 | None:intergenic | 35.0% | |
| ! | CACAAAATTTGAAACATGGC+AGG | - | chr6_1:27302198-27302217 | None:intergenic | 35.0% |
| !!! | TTGTCAGCTACCTTTGTTTT+TGG | - | chr6_1:27302309-27302328 | None:intergenic | 35.0% |
| ! | AGTTAAGTATCGCTCAATCA+AGG | + | chr6_1:27302543-27302562 | Msa0880540:intron | 35.0% |
| TGGAACTTTAGTTGCTCTAT+AGG | + | chr6_1:27302653-27302672 | Msa0880540:intron | 35.0% | |
| ACTTTAGTTGCTCTATAGGT+AGG | + | chr6_1:27302657-27302676 | Msa0880540:intron | 35.0% | |
| TGTTTATGTAGTTTGGCCAA+TGG | - | chr6_1:27302685-27302704 | None:intergenic | 35.0% | |
| TGAAGTCAAATCTGATCACA+AGG | - | chr6_1:27302750-27302769 | Msa0880550:CDS | 35.0% | |
| TTGACTTCACTTAACTGATC+TGG | + | chr6_1:27302761-27302780 | Msa0880540:intron | 35.0% | |
| CTTGAATGATGTGCATAATC+TGG | - | chr6_1:27302795-27302814 | Msa0880550:CDS | 35.0% | |
| CAGCTTACCATCTTCTATAA+TGG | + | chr6_1:27301644-27301663 | Msa0880540:CDS | 35.0% | |
| !! | GGGAGTATTTGTATCTATGA+TGG | + | chr6_1:27301665-27301684 | Msa0880540:CDS | 35.0% |
| ATTTCGATTGTGACGTAACA+TGG | - | chr6_1:27301765-27301784 | None:intergenic | 35.0% | |
| ! | CTTCTTTGTTTCACTAGACT+TGG | - | chr6_1:27301851-27301870 | None:intergenic | 35.0% |
| ATATTATCAGCAGTTCCATG+TGG | - | chr6_1:27301931-27301950 | None:intergenic | 35.0% | |
| GATAGAATTCTTTGCAGGAA+AGG | - | chr6_1:27301974-27301993 | None:intergenic | 35.0% | |
| ! | CACAAAATTTGAAACATGGC+AGG | - | chr6_1:27302198-27302217 | None:intergenic | 35.0% |
| !!! | TTGTCAGCTACCTTTGTTTT+TGG | - | chr6_1:27302309-27302328 | None:intergenic | 35.0% |
| ! | AGTTAAGTATCGCTCAATCA+AGG | + | chr6_1:27302543-27302562 | Msa0880540:intron | 35.0% |
| TGGAACTTTAGTTGCTCTAT+AGG | + | chr6_1:27302653-27302672 | Msa0880540:intron | 35.0% | |
| ACTTTAGTTGCTCTATAGGT+AGG | + | chr6_1:27302657-27302676 | Msa0880540:intron | 35.0% | |
| TGTTTATGTAGTTTGGCCAA+TGG | - | chr6_1:27302685-27302704 | None:intergenic | 35.0% | |
| TGAAGTCAAATCTGATCACA+AGG | - | chr6_1:27302750-27302769 | Msa0880550:CDS | 35.0% | |
| TTGACTTCACTTAACTGATC+TGG | + | chr6_1:27302761-27302780 | Msa0880540:intron | 35.0% | |
| CTTGAATGATGTGCATAATC+TGG | - | chr6_1:27302795-27302814 | Msa0880550:CDS | 35.0% | |
| TGATGGAATTCCTGCAGAAA+AGG | + | chr6_1:27301682-27301701 | Msa0880540:CDS | 40.0% | |
| TGAAGGAACAGGTGAAAGAA+CGG | - | chr6_1:27301896-27301915 | None:intergenic | 40.0% | |
| TTCTTTCACCTGTTCCTTCA+AGG | + | chr6_1:27301896-27301915 | Msa0880540:CDS | 40.0% | |
| TGATAATATCGCTTCACCAC+AGG | + | chr6_1:27301942-27301961 | Msa0880540:CDS | 40.0% | |
| CTGCAGATAGAATTCTTTGC+AGG | - | chr6_1:27301979-27301998 | None:intergenic | 40.0% | |
| CTGCAAAGAATTCTATCTGC+AGG | + | chr6_1:27301977-27301996 | Msa0880540:CDS | 40.0% | |
| AACAAAGGTAGCTGACAACA+TGG | + | chr6_1:27302311-27302330 | Msa0880540:CDS | 40.0% | |
| GACAACATGGAGAACAACTT+CGG | + | chr6_1:27302324-27302343 | Msa0880540:CDS | 40.0% | |
| TCCTTCATTGAAACCGAATC+TGG | - | chr6_1:27302363-27302382 | None:intergenic | 40.0% | |
| AGTATCGCTCAATCAAGGTA+CGG | + | chr6_1:27302548-27302567 | Msa0880540:intron | 40.0% | |
| ! | TCTGATCACAAGGTTGATTC+AGG | - | chr6_1:27302740-27302759 | Msa0880550:CDS | 40.0% |
| GAATGATGTGCATAATCTGG+AGG | - | chr6_1:27302792-27302811 | Msa0880550:CDS | 40.0% | |
| TGATGGAATTCCTGCAGAAA+AGG | + | chr6_1:27301682-27301701 | Msa0880540:CDS | 40.0% | |
| TGAAGGAACAGGTGAAAGAA+CGG | - | chr6_1:27301896-27301915 | None:intergenic | 40.0% | |
| TTCTTTCACCTGTTCCTTCA+AGG | + | chr6_1:27301896-27301915 | Msa0880540:CDS | 40.0% | |
| TGATAATATCGCTTCACCAC+AGG | + | chr6_1:27301942-27301961 | Msa0880540:CDS | 40.0% | |
| CTGCAGATAGAATTCTTTGC+AGG | - | chr6_1:27301979-27301998 | None:intergenic | 40.0% | |
| CTGCAAAGAATTCTATCTGC+AGG | + | chr6_1:27301977-27301996 | Msa0880540:CDS | 40.0% | |
| AACAAAGGTAGCTGACAACA+TGG | + | chr6_1:27302311-27302330 | Msa0880540:CDS | 40.0% | |
| GACAACATGGAGAACAACTT+CGG | + | chr6_1:27302324-27302343 | Msa0880540:CDS | 40.0% | |
| TCCTTCATTGAAACCGAATC+TGG | - | chr6_1:27302363-27302382 | None:intergenic | 40.0% | |
| AGTATCGCTCAATCAAGGTA+CGG | + | chr6_1:27302548-27302567 | Msa0880540:intron | 40.0% | |
| ! | TCTGATCACAAGGTTGATTC+AGG | - | chr6_1:27302740-27302759 | Msa0880550:CDS | 40.0% |
| GAATGATGTGCATAATCTGG+AGG | - | chr6_1:27302792-27302811 | Msa0880550:CDS | 40.0% | |
| ATTGGATTCGTTCCAGATGC+TGG | - | chr6_1:27301608-27301627 | None:intergenic | 45.0% | |
| AACAGGTGAAAGAACGGGAA+CGG | - | chr6_1:27301890-27301909 | None:intergenic | 45.0% | |
| GAAGGAACAGGTGAAAGAAC+GGG | - | chr6_1:27301895-27301914 | None:intergenic | 45.0% | |
| AATTCTATCTGCAGGCTGCA+AGG | + | chr6_1:27301985-27302004 | Msa0880540:CDS | 45.0% | |
| AGTGAATGTCTGCGTGCTAT+TGG | - | chr6_1:27302135-27302154 | None:intergenic | 45.0% | |
| !!! | GTTTTTGGCGAGGAAGGATA+GGG | - | chr6_1:27302294-27302313 | None:intergenic | 45.0% |
| !!! | TGTTTTTGGCGAGGAAGGAT+AGG | - | chr6_1:27302295-27302314 | None:intergenic | 45.0% |
| TCCTTCCTCGCCAAAAACAA+AGG | + | chr6_1:27302296-27302315 | Msa0880540:CDS | 45.0% | |
| !!! | ACCTTTGTTTTTGGCGAGGA+AGG | - | chr6_1:27302300-27302319 | None:intergenic | 45.0% |
| !!! | AGCTACCTTTGTTTTTGGCG+AGG | - | chr6_1:27302304-27302323 | None:intergenic | 45.0% |
| TGCTGACAATTCGCCAGATT+CGG | + | chr6_1:27302347-27302366 | Msa0880540:CDS | 45.0% | |
| ! | GCCAGATTCGGTTTCAATGA+AGG | + | chr6_1:27302359-27302378 | Msa0880540:intron | 45.0% |
| GGTTTCAATGAAGGAACCAC+AGG | + | chr6_1:27302368-27302387 | Msa0880540:intron | 45.0% | |
| TTCAATGAAGGAACCACAGG+AGG | + | chr6_1:27302371-27302390 | Msa0880540:intron | 45.0% | |
| CTCAATCAAGGTACGGCTAA+GGG | + | chr6_1:27302555-27302574 | Msa0880540:intron | 45.0% | |
| TCAATCAAGGTACGGCTAAG+GGG | + | chr6_1:27302556-27302575 | Msa0880540:intron | 45.0% | |
| TGATGTGCATAATCTGGAGG+AGG | - | chr6_1:27302789-27302808 | Msa0880550:CDS | 45.0% | |
| ATTGGATTCGTTCCAGATGC+TGG | - | chr6_1:27301608-27301627 | None:intergenic | 45.0% | |
| AACAGGTGAAAGAACGGGAA+CGG | - | chr6_1:27301890-27301909 | None:intergenic | 45.0% | |
| GAAGGAACAGGTGAAAGAAC+GGG | - | chr6_1:27301895-27301914 | None:intergenic | 45.0% | |
| AATTCTATCTGCAGGCTGCA+AGG | + | chr6_1:27301985-27302004 | Msa0880540:CDS | 45.0% | |
| AGTGAATGTCTGCGTGCTAT+TGG | - | chr6_1:27302135-27302154 | None:intergenic | 45.0% | |
| !!! | GTTTTTGGCGAGGAAGGATA+GGG | - | chr6_1:27302294-27302313 | None:intergenic | 45.0% |
| !!! | TGTTTTTGGCGAGGAAGGAT+AGG | - | chr6_1:27302295-27302314 | None:intergenic | 45.0% |
| TCCTTCCTCGCCAAAAACAA+AGG | + | chr6_1:27302296-27302315 | Msa0880540:CDS | 45.0% | |
| !!! | ACCTTTGTTTTTGGCGAGGA+AGG | - | chr6_1:27302300-27302319 | None:intergenic | 45.0% |
| !!! | AGCTACCTTTGTTTTTGGCG+AGG | - | chr6_1:27302304-27302323 | None:intergenic | 45.0% |
| TGCTGACAATTCGCCAGATT+CGG | + | chr6_1:27302347-27302366 | Msa0880540:CDS | 45.0% | |
| ! | GCCAGATTCGGTTTCAATGA+AGG | + | chr6_1:27302359-27302378 | Msa0880540:intron | 45.0% |
| GGTTTCAATGAAGGAACCAC+AGG | + | chr6_1:27302368-27302387 | Msa0880540:intron | 45.0% | |
| TTCAATGAAGGAACCACAGG+AGG | + | chr6_1:27302371-27302390 | Msa0880540:intron | 45.0% | |
| CTCAATCAAGGTACGGCTAA+GGG | + | chr6_1:27302555-27302574 | Msa0880540:intron | 45.0% | |
| TCAATCAAGGTACGGCTAAG+GGG | + | chr6_1:27302556-27302575 | Msa0880540:intron | 45.0% | |
| TGATGTGCATAATCTGGAGG+AGG | - | chr6_1:27302789-27302808 | Msa0880550:CDS | 45.0% | |
| ACAGGTGAAAGAACGGGAAC+GGG | - | chr6_1:27301889-27301908 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTGAAGGAAC+AGG | - | chr6_1:27301907-27301926 | None:intergenic | 50.0% | |
| !! | TTCTTCAGAAGCGTCGAGAC+AGG | + | chr6_1:27302163-27302182 | Msa0880540:CDS | 50.0% |
| GTTGGCTGAAATTCCTCCTG+TGG | - | chr6_1:27302387-27302406 | None:intergenic | 50.0% | |
| GCTCAATCAAGGTACGGCTA+AGG | + | chr6_1:27302554-27302573 | Msa0880540:intron | 50.0% | |
| GCTCTATAGGTAGGCACCAT+TGG | + | chr6_1:27302666-27302685 | Msa0880540:intron | 50.0% | |
| ACAGGTGAAAGAACGGGAAC+GGG | - | chr6_1:27301889-27301908 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTGAAGGAAC+AGG | - | chr6_1:27301907-27301926 | None:intergenic | 50.0% | |
| !! | TTCTTCAGAAGCGTCGAGAC+AGG | + | chr6_1:27302163-27302182 | Msa0880540:CDS | 50.0% |
| GTTGGCTGAAATTCCTCCTG+TGG | - | chr6_1:27302387-27302406 | None:intergenic | 50.0% | |
| GCTCAATCAAGGTACGGCTA+AGG | + | chr6_1:27302554-27302573 | Msa0880540:intron | 50.0% | |
| GCTCTATAGGTAGGCACCAT+TGG | + | chr6_1:27302666-27302685 | Msa0880540:intron | 50.0% | |
| ! | CGTAGGGCTACCTTTTCTGC+AGG | - | chr6_1:27301695-27301714 | None:intergenic | 55.0% |
| CAGTGTAGCGTAGCTGCGTA+GGG | - | chr6_1:27301711-27301730 | None:intergenic | 55.0% | |
| TCAGTGTAGCGTAGCTGCGT+AGG | - | chr6_1:27301712-27301731 | None:intergenic | 55.0% | |
| TGTGGCGAAGAAGGCCTTGA+AGG | - | chr6_1:27301913-27301932 | None:intergenic | 55.0% | |
| TCAAGGCCTTCTTCGCCACA+TGG | + | chr6_1:27301913-27301932 | Msa0880540:CDS | 55.0% | |
| GCAGTTCCATGTGGCGAAGA+AGG | - | chr6_1:27301922-27301941 | None:intergenic | 55.0% | |
| ! | CGTAGGGCTACCTTTTCTGC+AGG | - | chr6_1:27301695-27301714 | None:intergenic | 55.0% |
| CAGTGTAGCGTAGCTGCGTA+GGG | - | chr6_1:27301711-27301730 | None:intergenic | 55.0% | |
| TCAGTGTAGCGTAGCTGCGT+AGG | - | chr6_1:27301712-27301731 | None:intergenic | 55.0% | |
| TGTGGCGAAGAAGGCCTTGA+AGG | - | chr6_1:27301913-27301932 | None:intergenic | 55.0% | |
| TCAAGGCCTTCTTCGCCACA+TGG | + | chr6_1:27301913-27301932 | Msa0880540:CDS | 55.0% | |
| GCAGTTCCATGTGGCGAAGA+AGG | - | chr6_1:27301922-27301941 | None:intergenic | 55.0% | |
| GCAGGAAAGGGATGTGCCTG+TGG | - | chr6_1:27301961-27301980 | None:intergenic | 60.0% | |
| GCAGGAAAGGGATGTGCCTG+TGG | - | chr6_1:27301961-27301980 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 27301598 | 27302854 | 27301598 | ID=Msa0880540;Name=Msa0880540 |
| chr6_1 | mRNA | 27301598 | 27302854 | 27301598 | ID=Msa0880540-mRNA-1;Parent=Msa0880540;Name=Msa0880540-mRNA-1;_AED=0.21;_eAED=0.22;_QI=4|0|0|0.8|0.75|0.8|5|0|157 |
| chr6_1 | exon | 27301598 | 27301703 | 27301598 | ID=Msa0880540-mRNA-1:exon:6677;Parent=Msa0880540-mRNA-1 |
| chr6_1 | exon | 27301814 | 27302006 | 27301814 | ID=Msa0880540-mRNA-1:exon:6678;Parent=Msa0880540-mRNA-1 |
| chr6_1 | exon | 27302127 | 27302184 | 27302127 | ID=Msa0880540-mRNA-1:exon:6679;Parent=Msa0880540-mRNA-1 |
| chr6_1 | exon | 27302275 | 27302368 | 27302275 | ID=Msa0880540-mRNA-1:exon:6680;Parent=Msa0880540-mRNA-1 |
| chr6_1 | exon | 27302831 | 27302854 | 27302831 | ID=Msa0880540-mRNA-1:exon:6681;Parent=Msa0880540-mRNA-1 |
| chr6_1 | five_prime_UTR | 27301598 | 27301601 | 27301598 | ID=Msa0880540-mRNA-1:five_prime_utr;Parent=Msa0880540-mRNA-1 |
| chr6_1 | CDS | 27301602 | 27301703 | 27301602 | ID=Msa0880540-mRNA-1:cds;Parent=Msa0880540-mRNA-1 |
| chr6_1 | CDS | 27301814 | 27302006 | 27301814 | ID=Msa0880540-mRNA-1:cds;Parent=Msa0880540-mRNA-1 |
| chr6_1 | CDS | 27302127 | 27302184 | 27302127 | ID=Msa0880540-mRNA-1:cds;Parent=Msa0880540-mRNA-1 |
| chr6_1 | CDS | 27302275 | 27302368 | 27302275 | ID=Msa0880540-mRNA-1:cds;Parent=Msa0880540-mRNA-1 |
| chr6_1 | CDS | 27302831 | 27302854 | 27302831 | ID=Msa0880540-mRNA-1:cds;Parent=Msa0880540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
