AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238310 MtrunA17_Chr8g0349341 90.638 235 22 0 14 248 131 365 2.61e-157 441
Msa1238310 MtrunA17_Chr8g0349321 80.000 235 47 0 14 248 131 365 2.79e-139 395
Msa1238310 MtrunA17_Chr8g0349331 86.702 188 25 0 61 248 146 333 9.55e-121 347
Msa1238310 MtrunA17_Chr8g0349301 84.127 189 30 0 14 202 130 318 9.27e-113 326
Msa1238310 MtrunA17_Chr8g0344931 50.417 240 103 5 14 247 131 360 3.36e-75 232
Msa1238310 MtrunA17_Chr8g0344941 45.041 242 124 4 14 247 135 375 2.04e-66 210
Msa1238310 MtrunA17_Chr2g0301641 42.259 239 132 2 14 246 137 375 8.24e-63 201
Msa1238310 MtrunA17_Chr8g0341001 31.818 220 138 4 17 229 132 346 1.35e-35 129
Msa1238310 MtrunA17_Chr8g0370961 29.536 237 156 4 13 245 13 242 3.53e-33 120
Msa1238310 MtrunA17_Chr1g0189931 29.630 243 156 3 12 246 127 362 7.34e-33 122
Msa1238310 MtrunA17_Chr3g0105401 26.432 227 149 4 13 229 124 342 1.13e-31 119
Msa1238310 MtrunA17_Chr2g0330781 28.384 229 152 4 17 238 131 354 7.11e-31 117
Msa1238310 MtrunA17_Chr4g0027571 31.696 224 140 6 20 236 3 220 1.09e-29 111
Msa1238310 MtrunA17_Chr7g0274991 26.033 242 164 3 13 246 129 363 1.09e-29 114
Msa1238310 MtrunA17_Chr5g0444401 29.719 249 153 5 10 245 120 359 1.97e-29 113
Msa1238310 MtrunA17_Chr2g0320671 28.311 219 142 5 17 227 130 341 5.21e-29 112
Msa1238310 MtrunA17_Chr5g0438631 27.632 228 155 2 8 229 119 342 6.70e-29 111
Msa1238310 MtrunA17_Chr1g0156931 31.019 216 136 5 14 223 138 346 7.42e-29 112
Msa1238310 MtrunA17_Chr7g0215961 28.571 245 156 5 12 246 115 350 8.72e-29 111
Msa1238310 MtrunA17_Chr7g0275011 27.160 243 162 4 12 246 129 364 2.12e-28 110
Msa1238310 MtrunA17_Chr5g0438621 28.761 226 148 4 11 229 124 343 4.26e-28 109
Msa1238310 MtrunA17_Chr1g0156921 30.631 222 140 5 12 225 137 352 5.35e-28 109
Msa1238310 MtrunA17_Chr1g0189901 26.749 243 163 3 12 246 126 361 9.32e-28 108
Msa1238310 MtrunA17_Chr1g0156891 29.167 216 141 4 11 220 138 347 1.05e-27 108
Msa1238310 MtrunA17_Chr1g0182811 28.692 237 149 5 20 245 137 364 1.61e-27 108
Msa1238310 MtrunA17_Chr5g0437421 27.354 223 146 4 14 225 129 346 2.03e-27 108
Msa1238310 MtrunA17_Chr4g0008851 27.347 245 159 5 12 245 127 363 2.57e-27 107
Msa1238310 MtrunA17_Chr5g0438641 26.991 226 152 4 11 229 126 345 3.44e-27 107
Msa1238310 MtrunA17_Chr7g0275001 25.926 243 166 3 12 246 120 356 5.17e-27 107
Msa1238310 MtrunA17_Chr3g0120861 28.319 226 149 4 11 229 132 351 7.21e-27 106
Msa1238310 MtrunA17_Chr3g0077581 28.926 242 155 6 15 245 132 367 1.33e-26 105
Msa1238310 MtrunA17_Chr8g0380041 28.899 218 141 3 23 232 135 346 2.02e-26 105
Msa1238310 MtrunA17_Chr3g0092131 27.650 217 142 3 17 226 125 333 2.48e-26 105
Msa1238310 MtrunA17_Chr5g0405821 25.778 225 152 4 14 230 142 359 2.50e-26 105
Msa1238310 MtrunA17_Chr4g0046151 30.000 220 136 4 13 219 132 346 4.89e-26 104
Msa1238310 MtrunA17_Chr8g0371491 27.149 221 146 4 14 226 133 346 5.29e-26 103
Msa1238310 MtrunA17_Chr2g0294311 25.833 240 164 4 16 247 139 372 6.69e-26 103
Msa1238310 MtrunA17_Chr7g0275021 27.049 244 161 5 12 246 129 364 6.91e-26 103
Msa1238310 MtrunA17_Chr5g0405831 27.273 220 145 4 14 225 141 353 8.31e-26 103
Msa1238310 MtrunA17_Chr2g0294301 25.207 242 165 4 16 247 132 367 8.52e-26 103
Msa1238310 MtrunA17_Chr3g0077571 26.180 233 157 3 20 245 130 354 1.03e-25 103
Msa1238310 MtrunA17_Chr5g0434621 26.941 219 144 4 20 231 129 338 1.04e-25 103
Msa1238310 MtrunA17_Chr1g0156911 26.549 226 149 5 17 231 137 356 1.47e-25 102
Msa1238310 MtrunA17_Chr1g0156901 26.786 224 147 5 17 229 150 367 1.59e-25 103
Msa1238310 MtrunA17_Chr4g0068441 24.280 243 168 4 16 248 132 368 1.63e-25 102
Msa1238310 MtrunA17_Chr3g0086641 28.205 234 152 6 23 247 143 369 4.26e-25 102
Msa1238310 MtrunA17_Chr1g0189891 27.755 245 152 7 12 246 125 354 4.54e-25 101
Msa1238310 MtrunA17_Chr4g0060811 25.455 220 149 3 17 229 129 340 5.14e-25 101
Msa1238310 MtrunA17_Chr3g0142921 27.830 212 137 4 17 220 137 340 8.10e-25 100
Msa1238310 MtrunA17_Chr8g0370981 28.000 275 152 7 13 245 146 416 8.32e-25 101
Msa1238310 MtrunA17_Chr2g0283191 29.358 218 137 4 14 219 138 350 1.36e-24 100
Msa1238310 MtrunA17_Chr3g0099231 26.556 241 163 5 12 247 129 360 1.46e-24 100
Msa1238310 MtrunA17_Chr5g0432101 27.602 221 147 3 17 229 133 348 4.16e-24 99.0
Msa1238310 MtrunA17_Chr3g0099161 27.234 235 157 5 17 246 199 424 6.85e-24 99.4
Msa1238310 MtrunA17_Chr8g0370951 26.230 244 159 7 14 247 135 367 2.57e-23 97.1
Msa1238310 MtrunA17_Chr6g0457921 26.016 246 161 6 12 246 125 360 7.82e-23 95.5
Msa1238310 MtrunA17_Chr2g0284951 29.388 245 146 9 14 248 128 355 5.69e-22 93.2
Msa1238310 MtrunA17_Chr1g0159971 30.435 230 144 6 19 232 149 378 7.07e-22 93.2
Msa1238310 MtrunA17_Chr3g0142941 29.817 218 141 5 12 223 142 353 1.24e-21 92.4
Msa1238310 MtrunA17_Chr1g0159981 28.821 229 148 6 16 232 152 377 1.57e-21 92.4
Msa1238310 MtrunA17_Chr4g0027521 24.891 229 159 3 4 226 119 340 1.85e-21 91.7
Msa1238310 MtrunA17_Chr7g0229581 32.895 152 95 3 86 236 8 153 1.95e-21 87.8
Msa1238310 MtrunA17_Chr2g0285061 23.651 241 168 5 17 247 130 364 2.26e-21 91.7
Msa1238310 MtrunA17_Chr3g0099151 28.085 235 154 5 17 245 194 419 2.88e-21 91.7
Msa1238310 MtrunA17_Chr8g0371481 25.221 226 147 5 14 227 138 353 3.69e-21 90.9
Msa1238310 MtrunA17_Chr5g0396511 24.051 237 166 5 17 245 146 376 8.18e-21 90.1
Msa1238310 MtrunA17_Chr1g0160011 29.167 240 153 7 10 232 130 369 1.06e-20 89.7
Msa1238310 MtrunA17_Chr1g0157001 25.203 246 163 6 14 245 134 372 1.38e-20 89.4
Msa1238310 MtrunA17_Chr8g0371471 25.664 226 147 5 13 227 137 352 1.78e-20 89.0
Msa1238310 MtrunA17_Chr8g0374101 24.481 241 163 6 17 245 140 373 2.16e-20 89.0
Msa1238310 MtrunA17_Chr1g0160031 30.653 199 128 5 44 232 170 368 2.21e-20 89.0
Msa1238310 MtrunA17_Chr1g0159991 30.500 200 127 5 45 232 168 367 2.65e-20 88.6
Msa1238310 MtrunA17_Chr6g0455661 26.778 239 156 6 17 245 240 469 4.11e-20 89.0
Msa1238310 MtrunA17_Chr7g0254461 26.383 235 155 5 16 235 150 381 7.21e-20 87.8
Msa1238310 MtrunA17_Chr8g0381581 26.609 233 153 6 15 232 145 374 7.69e-20 87.4
Msa1238310 MtrunA17_Chr4g0017431 23.361 244 171 4 13 247 126 362 9.62e-20 87.0
Msa1238310 MtrunA17_Chr7g0271551 29.381 194 124 5 47 231 161 350 1.84e-19 86.3
Msa1238310 MtrunA17_Chr6g0459921 26.360 239 157 6 17 245 129 358 2.09e-19 85.9
Msa1238310 MtrunA17_Chr7g0275291 26.667 240 151 7 17 235 130 365 4.18e-19 85.5
Msa1238310 MtrunA17_Chr4g0018571 30.822 146 96 2 80 225 25 165 6.59e-19 81.3
Msa1238310 MtrunA17_Chr6g0450711 26.160 237 153 6 19 235 217 451 1.51e-18 84.3
Msa1238310 MtrunA17_Chr3g0131321 23.849 239 164 4 20 248 139 369 3.71e-18 82.8
Msa1238310 MtrunA17_Chr7g0226911 25.769 260 167 6 1 235 116 374 4.89e-18 82.4
Msa1238310 MtrunA17_Chr7g0226931 25.092 271 166 6 1 235 119 388 9.51e-18 81.6
Msa1238310 MtrunA17_Chr3g0085881 29.880 251 144 10 9 247 122 352 1.24e-17 80.9
Msa1238310 MtrunA17_Chr1g0160101 26.957 230 152 5 19 232 145 374 1.28e-17 81.3
Msa1238310 MtrunA17_Chr6g0450731 29.500 200 120 7 47 235 162 351 1.36e-17 80.9
Msa1238310 MtrunA17_Chr8g0380031 26.271 236 147 7 20 245 185 403 1.68e-17 80.9
Msa1238310 MtrunA17_Chr3g0085231 27.197 239 144 7 17 245 129 347 2.38e-17 80.1
Msa1238310 MtrunA17_Chr6g0469521 32.353 136 87 2 76 211 22 152 5.17e-17 75.5
Msa1238310 MtrunA17_Chr8g0352901 25.726 241 154 6 19 235 123 362 8.46e-17 78.6
Msa1238310 MtrunA17_Chr6g0450701 24.895 237 156 6 19 235 134 368 1.88e-16 77.8
Msa1238310 MtrunA17_Chr4g0057991 23.504 234 165 6 11 235 137 365 4.61e-16 76.6
Msa1238310 MtrunA17_Chr1g0178931 27.128 188 126 5 40 221 148 330 4.66e-16 76.3
Msa1238310 MtrunA17_Chr2g0285001 25.431 232 150 7 27 248 143 361 5.64e-15 73.6
Msa1238310 MtrunA17_Chr2g0284921 25.000 260 164 9 1 247 119 360 9.77e-15 72.8
Msa1238310 MtrunA17_Chr8g0347751 26.214 206 140 5 40 235 169 372 9.77e-15 72.8
Msa1238310 MtrunA17_Chr5g0440501 22.407 241 169 6 8 236 2 236 1.03e-14 71.6
Msa1238310 MtrunA17_Chr5g0420811 25.431 232 158 8 17 245 131 350 1.09e-14 72.4
Msa1238310 MtrunA17_Chr7g0226941 25.738 237 154 5 17 232 130 365 2.04e-14 72.0
Msa1238310 MtrunA17_Chr1g0189911 29.921 127 84 1 120 246 23 144 3.44e-14 68.2
Msa1238310 MtrunA17_Chr2g0283481 26.667 240 158 8 17 245 156 388 7.88e-14 70.5
Msa1238310 MtrunA17_Chr2g0283511 26.877 253 155 11 9 245 130 368 1.87e-13 69.3
Msa1238310 MtrunA17_Chr7g0266061 27.103 214 137 8 16 221 134 336 1.92e-13 68.9
Msa1238310 MtrunA17_Chr7g0228261 33.708 89 54 1 158 246 7 90 2.05e-13 64.3
Msa1238310 MtrunA17_Chr6g0450721 26.407 231 141 8 19 232 128 346 2.49e-13 68.6
Msa1238310 MtrunA17_Chr3g0104831 25.726 241 155 9 17 239 68 302 3.34e-13 67.8
Msa1238310 MtrunA17_Chr3g0104821 26.141 241 154 9 17 239 149 383 3.57e-13 68.2
Msa1238310 MtrunA17_Chr2g0317261 23.729 236 153 8 17 239 133 354 6.98e-13 67.4
Msa1238310 MtrunA17_Chr7g0273101 25.000 212 135 7 43 235 158 364 1.36e-12 66.6
Msa1238310 MtrunA17_Chr3g0096551 25.911 247 151 9 17 239 134 372 1.68e-12 66.2
Msa1238310 MtrunA17_Chr2g0317271 23.729 236 153 8 17 239 133 354 2.28e-12 65.9
Msa1238310 MtrunA17_Chr3g0112821 24.051 237 160 7 17 245 134 358 4.48e-12 65.1
Msa1238310 MtrunA17_Chr1g0191461 25.000 208 135 6 46 235 161 365 6.37e-12 64.7
Msa1238310 MtrunA17_Chr0c01g0489581 23.305 236 154 8 17 239 133 354 8.98e-12 63.9
Msa1238310 MtrunA17_Chr2g0284941 25.514 243 136 10 17 248 131 339 2.21e-11 62.8
Msa1238310 MtrunA17_Chr0c01g0489571 23.305 236 154 8 17 239 133 354 2.26e-11 62.8
Msa1238310 MtrunA17_Chr2g0301551 23.789 227 145 7 17 232 93 302 4.80e-11 61.6
Msa1238310 MtrunA17_Chr2g0301581 23.789 227 145 7 17 232 137 346 7.55e-11 61.2
Msa1238310 MtrunA17_Chr2g0301571 25.110 227 142 8 17 232 93 302 8.08e-11 61.2
Msa1238310 MtrunA17_Chr2g0283541 24.638 207 146 7 39 236 84 289 8.71e-11 60.8
Msa1238310 MtrunA17_Chr3g0093031 24.380 242 158 9 17 245 134 363 9.62e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238310 AT5G40990.1 46.473 241 121 4 14 247 133 372 8.05e-68 214
Msa1238310 AT1G53920.1 43.802 242 127 4 14 247 143 383 2.83e-67 213
Msa1238310 AT3G14225.2 43.515 239 127 4 16 247 135 372 2.74e-65 207
Msa1238310 AT3G14225.1 43.515 239 127 4 16 247 139 376 3.58e-65 207
Msa1238310 AT1G53940.2 44.215 242 125 6 14 247 135 374 2.62e-62 200
Msa1238310 AT1G53990.1 43.154 241 129 4 14 247 124 363 6.01e-61 196
Msa1238310 AT1G53940.1 42.515 167 87 5 14 173 135 299 3.05e-32 120
Msa1238310 AT5G45960.1 32.719 217 131 4 13 219 143 354 3.60e-32 121
Msa1238310 AT3G16370.1 30.568 229 147 4 17 238 130 353 1.81e-31 119
Msa1238310 AT5G41890.1 28.253 269 166 7 1 245 107 372 5.04e-31 118
Msa1238310 AT5G45950.1 31.364 220 133 6 13 225 135 343 5.71e-31 117
Msa1238310 AT5G33370.1 26.749 243 163 3 12 246 125 360 9.12e-30 114
Msa1238310 AT4G26790.1 30.172 232 143 6 8 229 120 342 1.15e-29 114
Msa1238310 AT4G26790.2 30.172 232 143 6 8 229 120 342 1.15e-29 114
Msa1238310 AT5G03810.1 26.941 219 150 3 17 229 130 344 2.91e-29 113
Msa1238310 AT1G54030.1 29.717 212 135 4 40 246 159 361 6.02e-29 113
Msa1238310 AT2G04570.1 30.531 226 144 4 11 229 122 341 2.14e-28 110
Msa1238310 AT3G04290.1 26.556 241 162 3 12 244 124 357 2.22e-28 110
Msa1238310 AT5G03820.1 27.727 220 148 4 17 229 133 348 2.96e-28 110
Msa1238310 AT5G03820.2 27.982 218 146 4 17 227 161 374 8.70e-28 109
Msa1238310 AT1G06990.1 29.126 206 128 4 31 226 151 348 1.28e-27 108
Msa1238310 AT5G37690.2 27.064 218 143 4 20 230 123 331 2.15e-27 108
Msa1238310 AT5G37690.1 27.064 218 143 4 20 230 131 339 2.40e-27 108
Msa1238310 AT2G23540.1 28.099 242 153 6 17 245 151 384 9.37e-27 107
Msa1238310 AT5G15720.3 28.095 210 138 2 44 245 126 330 1.72e-26 105
Msa1238310 AT5G18430.1 26.860 242 161 4 12 244 124 358 2.06e-26 105
Msa1238310 AT3G53100.1 26.606 218 145 5 17 226 129 339 2.99e-26 105
Msa1238310 AT5G15720.1 28.095 210 138 2 44 245 157 361 4.20e-26 104
Msa1238310 AT1G71691.1 26.794 209 138 3 44 245 79 279 6.07e-26 102
Msa1238310 AT2G40250.1 27.426 237 152 5 2 228 126 352 1.04e-25 103
Msa1238310 AT1G20120.1 29.954 217 141 4 17 227 178 389 1.34e-25 103
Msa1238310 AT1G75880.1 27.442 215 145 3 17 225 153 362 2.02e-25 103
Msa1238310 AT1G75880.2 27.442 215 145 3 17 225 152 361 2.15e-25 103
Msa1238310 AT4G28780.1 25.620 242 167 4 12 246 126 361 3.38e-25 102
Msa1238310 AT4G18970.1 28.054 221 143 5 35 245 144 358 3.61e-25 102
Msa1238310 AT1G71120.1 26.923 208 143 5 42 245 153 355 3.77e-25 102
Msa1238310 AT4G18970.2 28.054 221 143 5 35 245 144 358 7.01e-25 102
Msa1238310 AT1G71691.2 26.794 209 138 3 44 245 180 380 7.95e-25 101
Msa1238310 AT1G75890.2 25.926 216 149 4 17 226 148 358 1.04e-24 101
Msa1238310 AT2G42990.1 24.670 227 158 4 11 230 122 342 1.06e-24 100
Msa1238310 AT1G59406.1 26.267 217 152 3 12 225 125 336 1.18e-24 100
Msa1238310 AT1G59030.1 26.267 217 152 3 12 225 125 336 1.18e-24 100
Msa1238310 AT1G58725.1 26.267 217 152 3 12 225 125 336 1.18e-24 100
Msa1238310 AT1G20132.1 26.906 223 152 4 14 230 158 375 1.23e-24 101
Msa1238310 AT1G75890.1 25.926 216 149 4 17 226 161 371 1.25e-24 101
Msa1238310 AT1G75890.3 25.926 216 149 4 17 226 177 387 1.27e-24 101
Msa1238310 AT5G22810.1 25.455 220 150 5 17 227 134 348 1.29e-24 100
Msa1238310 AT1G29670.1 25.941 239 158 6 20 247 132 362 2.52e-24 100
Msa1238310 AT1G29670.2 25.941 239 158 6 20 247 200 430 4.14e-24 100
Msa1238310 AT1G58520.3 26.957 230 144 5 8 225 112 329 5.23e-24 99.0
Msa1238310 AT1G58525.1 26.957 230 144 5 8 225 112 329 5.23e-24 99.0
Msa1238310 AT3G14220.1 30.952 210 130 7 45 245 147 350 6.02e-24 99.0
Msa1238310 AT3G14820.1 28.125 224 150 5 12 231 127 343 6.56e-24 98.6
Msa1238310 AT1G58430.1 27.523 218 142 4 11 219 130 340 7.04e-24 98.6
Msa1238310 AT1G75900.1 24.434 221 157 3 14 229 140 355 1.62e-23 97.8
Msa1238310 AT2G31540.1 27.966 236 147 6 10 229 122 350 3.37e-23 97.1
Msa1238310 AT2G24560.1 28.095 210 135 5 20 220 138 340 3.86e-23 96.7
Msa1238310 AT2G31550.1 27.014 211 138 4 24 225 2 205 4.30e-23 94.0
Msa1238310 AT5G63170.1 30.734 218 123 7 9 219 123 319 4.55e-23 96.3
Msa1238310 AT1G20135.1 26.852 216 133 4 17 225 129 326 5.30e-23 95.9
Msa1238310 AT1G29660.1 25.664 226 151 5 20 235 132 350 6.72e-23 96.3
Msa1238310 AT1G20130.2 26.991 226 141 6 20 229 287 504 8.16e-23 97.1
Msa1238310 AT5G45670.1 26.697 221 146 5 35 245 145 359 1.03e-22 95.5
Msa1238310 AT1G20130.1 26.991 226 141 6 20 229 307 524 1.05e-22 97.1
Msa1238310 AT1G23500.1 28.384 229 142 6 8 232 129 339 1.06e-22 95.5
Msa1238310 AT3G50400.1 26.639 244 155 8 17 245 137 371 2.51e-22 94.7
Msa1238310 AT5G42170.1 26.267 217 152 4 12 225 145 356 4.91e-22 94.0
Msa1238310 AT2G30220.1 25.455 220 146 3 20 229 137 348 5.46e-22 93.6
Msa1238310 AT5G55050.1 28.230 209 136 5 44 245 172 373 5.53e-22 93.6
Msa1238310 AT4G10950.2 23.729 236 166 5 20 247 174 403 9.37e-22 93.6
Msa1238310 AT4G10950.1 23.729 236 166 5 20 247 170 399 1.01e-21 93.2
Msa1238310 AT1G73610.1 28.761 226 132 7 8 226 129 332 2.32e-21 91.7
Msa1238310 AT1G74460.1 24.434 221 150 4 17 229 125 336 4.47e-21 91.3
Msa1238310 AT2G30310.1 24.885 217 151 2 20 229 138 349 5.47e-21 90.9
Msa1238310 AT5G14450.1 28.169 213 137 5 32 232 165 373 2.71e-20 89.4
Msa1238310 AT1G54010.1 27.962 211 140 5 43 245 148 354 5.02e-20 88.6
Msa1238310 AT1G09390.1 27.039 233 154 6 12 235 133 358 5.45e-20 88.2
Msa1238310 AT1G56670.1 28.351 194 126 4 47 231 168 357 1.58e-19 87.0
Msa1238310 AT1G54000.1 27.014 211 142 6 43 245 148 354 1.63e-19 87.0
Msa1238310 AT1G54020.4 25.000 208 144 5 44 245 10 211 6.29e-19 83.2
Msa1238310 AT1G75910.1 26.432 227 143 6 12 229 123 334 6.68e-19 84.7
Msa1238310 AT4G01130.3 27.189 217 143 6 43 245 78 293 1.09e-18 83.6
Msa1238310 AT1G54020.1 24.880 209 145 5 44 246 59 261 2.01e-18 82.8
Msa1238310 AT1G54020.5 24.880 209 145 5 44 246 59 261 2.01e-18 82.8
Msa1238310 AT1G54020.3 24.880 209 145 5 44 246 59 261 2.01e-18 82.8
Msa1238310 AT4G01130.1 27.189 217 143 6 43 245 164 379 2.34e-18 83.6
Msa1238310 AT1G71250.1 22.394 259 179 4 3 245 118 370 2.56e-18 83.6
Msa1238310 AT2G19010.1 25.210 238 141 8 31 248 128 348 2.71e-18 83.2
Msa1238310 AT2G19010.2 25.210 238 141 8 31 248 158 378 3.30e-18 83.2
Msa1238310 AT1G33811.1 26.267 217 143 5 23 227 139 350 3.80e-18 82.8
Msa1238310 AT1G28640.1 28.085 235 139 8 17 232 141 364 6.92e-18 82.4
Msa1238310 AT1G54020.2 25.000 208 144 5 44 245 145 346 8.68e-18 82.0
Msa1238310 AT3G14210.2 25.417 240 154 7 17 245 3 228 9.30e-18 80.5
Msa1238310 AT1G75920.3 27.315 216 134 6 20 227 101 301 2.19e-17 80.1
Msa1238310 AT5G08460.1 24.473 237 162 4 20 245 152 382 2.35e-17 80.9
Msa1238310 AT1G75920.4 27.064 218 136 6 20 229 104 306 2.46e-17 80.1
Msa1238310 AT1G75920.2 27.315 216 134 6 20 227 132 332 3.30e-17 80.1
Msa1238310 AT3G14210.1 25.417 240 154 7 17 245 131 356 4.40e-17 80.1
Msa1238310 AT1G75920.1 27.315 216 134 6 20 227 142 342 4.46e-17 79.7
Msa1238310 AT4G16233.1 31.496 127 81 2 120 245 6 127 5.27e-17 75.5
Msa1238310 AT5G03610.1 28.507 221 139 8 14 225 134 344 6.68e-17 79.3
Msa1238310 AT1G28650.1 28.085 235 139 8 17 232 143 366 1.06e-16 79.0
Msa1238310 AT2G27360.1 28.125 224 136 9 39 245 160 375 2.62e-16 77.8
Msa1238310 AT3G48460.1 23.913 230 159 7 11 232 142 363 3.16e-16 77.4
Msa1238310 AT3G26430.1 26.180 233 154 6 15 232 136 365 4.50e-16 77.0
Msa1238310 AT1G28600.1 28.125 256 156 12 1 240 118 361 8.18e-16 76.3
Msa1238310 AT1G28570.3 25.121 207 141 6 53 248 12 215 9.65e-16 74.3
Msa1238310 AT5G03980.1 26.556 241 156 9 3 229 77 310 1.26e-15 75.5
Msa1238310 AT1G28580.2 25.641 234 154 8 17 236 62 289 3.57e-15 73.9
Msa1238310 AT1G28570.1 23.770 244 169 8 17 248 140 378 3.95e-15 74.3
Msa1238310 AT1G28570.2 25.121 207 141 6 53 248 103 306 4.25e-15 73.9
Msa1238310 AT1G28580.1 25.641 234 154 8 17 236 143 370 5.92e-15 73.9
Msa1238310 AT3G43550.1 24.540 163 119 2 12 171 125 286 7.68e-15 72.8
Msa1238310 AT1G67830.1 26.991 226 146 6 19 225 132 357 9.96e-15 73.2
Msa1238310 AT3G05180.1 24.583 240 153 7 19 235 137 371 2.08e-14 72.4
Msa1238310 AT1G54030.2 33.051 118 72 2 45 157 164 279 3.04e-14 71.2
Msa1238310 AT2G03980.2 26.786 224 139 9 17 231 144 351 3.13e-14 71.6
Msa1238310 AT2G03980.3 26.786 224 139 9 17 231 144 351 3.13e-14 71.6
Msa1238310 AT2G03980.1 26.786 224 139 9 17 231 144 351 3.13e-14 71.6
Msa1238310 AT2G03980.4 26.786 224 139 9 17 231 144 351 3.13e-14 71.6
Msa1238310 AT1G54790.1 26.415 212 128 8 45 235 162 366 4.78e-14 71.2
Msa1238310 AT1G28610.2 26.829 205 128 7 53 245 172 366 5.75e-14 70.9
Msa1238310 AT1G54790.3 26.415 212 128 8 45 235 163 367 8.33e-14 70.5
Msa1238310 AT3G09930.2 26.667 225 138 7 14 225 131 341 1.38e-13 69.7
Msa1238310 AT3G09930.1 26.667 225 138 7 14 225 131 341 1.38e-13 69.7
Msa1238310 AT1G28670.1 26.087 230 151 7 17 232 141 365 1.55e-13 69.7
Msa1238310 AT4G30140.1 22.269 238 162 8 16 245 124 346 1.53e-12 66.6
Msa1238310 AT1G28660.1 24.893 233 149 7 17 232 141 364 2.02e-12 66.6
Msa1238310 AT5G15720.2 26.471 136 92 1 44 171 157 292 2.66e-12 65.9
Msa1238310 AT1G28590.1 25.561 223 149 8 39 248 162 380 2.66e-12 66.2
Msa1238310 AT1G31550.2 26.697 221 143 9 39 245 161 376 1.03e-11 64.3
Msa1238310 AT1G28660.2 25.322 233 147 8 17 232 141 363 2.08e-11 63.5
Msa1238310 AT5G03600.1 27.027 185 119 5 48 225 132 307 4.39e-11 62.4
Msa1238310 AT5G03600.2 27.027 185 119 5 48 225 167 342 5.10e-11 62.4
Msa1238310 AT2G19050.1 22.727 242 148 10 21 245 127 346 6.72e-11 62.0

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCGTAACTTACCAAATT+TGG 0.119455 8_2:-18339930 None:intergenic
GAGATTGGAGGGAGGAAATT+TGG 0.128940 8_2:+18339689 Msa1238310:CDS
ATAAGCAACCCTTCCAAATT+TGG 0.188157 8_2:+18339917 Msa1238310:CDS
GATTTCCACTCCACATATAT+TGG 0.208033 8_2:-18341289 None:intergenic
AGATTGGAGGGAGGAAATTT+GGG 0.288893 8_2:+18339690 Msa1238310:CDS
CTTAAGTTCCACTGATAGTT+TGG 0.296067 8_2:-18339825 None:intergenic
ACCATTTACAAATGCCTTGA+TGG 0.308965 8_2:-18339747 None:intergenic
ACCATCAAGGCATTTGTAAA+TGG 0.321410 8_2:+18339746 Msa1238310:CDS
ATTTCCACTCCACATATATT+GGG 0.342945 8_2:-18341288 None:intergenic
AACTTGGAGCAGAGGAACTA+TGG 0.356682 8_2:+18337731 Msa1238310:CDS
ATAGTTTGGTGTTGTGTACT+TGG 0.390411 8_2:-18339811 None:intergenic
GTTGATTAAGTAAACAGCTT+TGG 0.391709 8_2:-18338587 None:intergenic
TCTACTCATCCTACTGAAAC+TGG 0.391804 8_2:+18341251 Msa1238310:CDS
TTTCAGGGAATACATGAGAT+TGG 0.392735 8_2:+18339674 Msa1238310:intron
CAACTGTAATATCCTCTGTA+TGG 0.426069 8_2:-18341161 None:intergenic
TGAAAAGGTTTGAAAGAAGC+AGG 0.440425 8_2:+18341116 Msa1238310:intron
ATTCTTAACCAACCATCTCT+TGG 0.462864 8_2:+18339713 Msa1238310:CDS
TTTACAAATGCCTTGATGGT+TGG 0.472101 8_2:-18339743 None:intergenic
GGAGTGGCATGCTGTGGTAG+TGG 0.477898 8_2:+18341137 Msa1238310:CDS
GCTGTTTACTTAATCAACAT+TGG 0.479448 8_2:+18338592 Msa1238310:CDS
GGATTATTTCCCAATATATG+TGG 0.497938 8_2:+18341279 Msa1238310:CDS
TTGGTGTTGTGTACTTGGGC+AGG 0.498875 8_2:-18339806 None:intergenic
ATCCTACTGAAACTGGTAGT+AGG 0.507836 8_2:+18341258 Msa1238310:CDS
CGTAACTTACCAAATTTGGA+AGG 0.516498 8_2:-18339926 None:intergenic
TGAAGAAACCACATCTCTGC+TGG 0.521036 8_2:+18338564 Msa1238310:CDS
CAGGGAATACATGAGATTGG+AGG 0.540491 8_2:+18339677 Msa1238310:intron
GTTTACTTAATCAACATTGG+AGG 0.549518 8_2:+18338595 Msa1238310:CDS
AAATACGTATCCATGGTAGT+TGG 0.555951 8_2:+18338661 Msa1238310:CDS
TACAGAGGATATTACAGTTG+TGG 0.558522 8_2:+18341164 Msa1238310:CDS
AACGTATTGAGGCAGAAACT+AGG 0.562730 8_2:+18338538 Msa1238310:CDS
AGGGAATACATGAGATTGGA+GGG 0.573956 8_2:+18339678 Msa1238310:intron
AGCTTTGGCCAGCAGAGATG+TGG 0.576046 8_2:-18338572 None:intergenic
AACTGTAATATCCTCTGTAT+GGG 0.576942 8_2:-18341160 None:intergenic
TCAAAGAACAAATATTCAGA+AGG 0.585525 8_2:-18341227 None:intergenic
TAGTTTGGTGTTGTGTACTT+GGG 0.588795 8_2:-18339810 None:intergenic
GAAAACAACCAAGAGATGGT+TGG 0.594114 8_2:-18339721 None:intergenic
ATTTCCCAATATATGTGGAG+TGG 0.596347 8_2:+18341284 Msa1238310:CDS
GTAACTTACCAAATTTGGAA+GGG 0.597774 8_2:-18339925 None:intergenic
AATTTAACAAAACAGATCAA+AGG 0.599516 8_2:+18339848 Msa1238310:CDS
ACACAACACCAAACTATCAG+TGG 0.601101 8_2:+18339817 Msa1238310:CDS
AGAATGTCAAGAACGTATTG+AGG 0.601494 8_2:+18338527 Msa1238310:CDS
AGTGGAAATCAAAGTATCGC+CGG 0.608729 8_2:+18341302 Msa1238310:CDS
GTTGGAAAACAACCAAGAGA+TGG 0.630250 8_2:-18339725 None:intergenic
AGGTTTGAAAGAAGCAGGAG+TGG 0.636959 8_2:+18341121 Msa1238310:intron
AGTAAGATTACCAACTACCA+TGG 0.638643 8_2:-18338671 None:intergenic
AGAGGATATTACAGTTGTGG+AGG 0.638747 8_2:+18341167 Msa1238310:CDS
ATCCTACTACCAGTTTCAGT+AGG 0.640339 8_2:-18341260 None:intergenic
GAAGCAGGAGTGGCATGCTG+TGG 0.644819 8_2:+18341131 Msa1238310:CDS
TGTGGTAGTGGCCCATACAG+AGG 0.687434 8_2:+18341149 Msa1238310:CDS
GAATACATGAGATTGGAGGG+AGG 0.702913 8_2:+18339681 Msa1238310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATCATAAAGT+AGG + chr8_2:18337908-18337927 Msa1238310:intron 10.0%
!! ACTTATTTAAAAAGTAATTA+GGG + chr8_2:18339148-18339167 Msa1238310:intron 10.0%
!!! ATTTATAAAAATAAGTTGAA+AGG - chr8_2:18339226-18339245 None:intergenic 10.0%
!! TGTATATTAATAGAAAAATA+CGG - chr8_2:18339317-18339336 None:intergenic 10.0%
!!! TTATATTCAAATAAAAGTTT+TGG - chr8_2:18340195-18340214 None:intergenic 10.0%
!!! AAAAACAAAACAATTTTTTT+TGG + chr8_2:18340852-18340871 Msa1238310:intron 10.0%
!!! AAAACAAAACAATTTTTTTT+GGG + chr8_2:18340853-18340872 Msa1238310:intron 10.0%
!! AAATATATTTGCTTAAATCT+AGG + chr8_2:18337792-18337811 Msa1238310:intron 15.0%
!! ATATATACAAAATTAACAAG+TGG - chr8_2:18337895-18337914 None:intergenic 15.0%
!! AAACAAAAATTGAGTATTAT+TGG + chr8_2:18337941-18337960 Msa1238310:intron 15.0%
!! AAATATAAATGCATAGTATT+TGG + chr8_2:18338763-18338782 Msa1238310:intron 15.0%
!!! TCAAAACATGTTTTAATTAT+GGG - chr8_2:18339125-18339144 None:intergenic 15.0%
!!! ATCAAAACATGTTTTAATTA+TGG - chr8_2:18339126-18339145 None:intergenic 15.0%
!! GACTTATTTAAAAAGTAATT+AGG + chr8_2:18339147-18339166 Msa1238310:intron 15.0%
!! TACTGTTAAAATCATTTAAT+TGG - chr8_2:18340281-18340300 None:intergenic 15.0%
!!! AATGTCATACTTTTTTTTTT+TGG - chr8_2:18340345-18340364 None:intergenic 15.0%
!!! GATATAATCAATTAATTTGA+TGG - chr8_2:18340513-18340532 None:intergenic 15.0%
!! TTAAACCTAAATTATAAGTT+AGG - chr8_2:18340572-18340591 None:intergenic 15.0%
!!! CAAAATTGACTATATTTTTA+AGG - chr8_2:18340609-18340628 None:intergenic 15.0%
!! ATAGTCCATAAAAAATATAA+CGG + chr8_2:18340632-18340651 Msa1238310:intron 15.0%
!!! AAGAATTCATAGTATTTTTA+AGG + chr8_2:18340913-18340932 Msa1238310:intron 15.0%
!!! TTATCTAATTCTAAAATTTG+TGG + chr8_2:18341080-18341099 Msa1238310:intron 15.0%
!!! TAATCATAAAGTAGGAATTT+TGG + chr8_2:18337916-18337935 Msa1238310:intron 20.0%
!! NNNNNNNNNGATCTATCACT+GGG - chr8_2:18338108-18338127 None:intergenic 20.0%
!! NNNNNNNNNNGATCTATCAC+TGG - chr8_2:18338109-18338128 None:intergenic 20.0%
!! AATATAAATGTACAGTGTTT+AGG - chr8_2:18338885-18338904 None:intergenic 20.0%
!!! GTTCTTTTAGTTATAAGTAA+AGG + chr8_2:18338943-18338962 Msa1238310:intron 20.0%
!!! AAGTAAAACTTACATTTTCA+AGG + chr8_2:18339057-18339076 Msa1238310:intron 20.0%
!!! TATAAAAATAAGTTGAAAGG+AGG - chr8_2:18339223-18339242 None:intergenic 20.0%
!! AATATTATACATTGTCAACT+AGG - chr8_2:18339277-18339296 None:intergenic 20.0%
!! TTAAGATGTTTATTCAAACA+TGG + chr8_2:18339596-18339615 Msa1238310:intron 20.0%
!! ATGATAATAGTAGAAGATTT+AGG - chr8_2:18339622-18339641 None:intergenic 20.0%
!!! TCATTCCAATATTTAATTTC+AGG + chr8_2:18339658-18339677 Msa1238310:intron 20.0%
!!! CATTCCAATATTTAATTTCA+GGG + chr8_2:18339659-18339678 Msa1238310:intron 20.0%
!! TATTCCCTGAAATTAAATAT+TGG - chr8_2:18339666-18339685 None:intergenic 20.0%
!! AATTTAACAAAACAGATCAA+AGG + chr8_2:18339848-18339867 Msa1238310:CDS 20.0%
!!! AAACTTGAGAAAATTTTCAA+TGG - chr8_2:18340093-18340112 None:intergenic 20.0%
!!! AAACTTGAGAAAATTTTCAA+TGG + chr8_2:18340093-18340112 Msa1238310:intron 20.0%
!! AAAAATAAATATGCCGTAAT+TGG - chr8_2:18340132-18340151 None:intergenic 20.0%
!!! TTCAAATAAAAGTTTTGGAA+TGG - chr8_2:18340190-18340209 None:intergenic 20.0%
!! AATTAAAGTTGTATGTATGT+CGG + chr8_2:18340222-18340241 Msa1238310:intron 20.0%
!!! GTAAAAGATTTGGTAAAAAA+AGG - chr8_2:18340475-18340494 None:intergenic 20.0%
!! AAATCATTTGATATGTGATT+TGG - chr8_2:18340535-18340554 None:intergenic 20.0%
!! AAGTACCTAACTTATAATTT+AGG + chr8_2:18340564-18340583 Msa1238310:intron 20.0%
!! TAGTCCATAAAAAATATAAC+GGG + chr8_2:18340633-18340652 Msa1238310:intron 20.0%
!!! ACAAAACAATTTTTTTTGAG+AGG - chr8_2:18340669-18340688 None:intergenic 20.0%
!! ATAATAGATTGTCATTACTT+GGG - chr8_2:18340762-18340781 None:intergenic 20.0%
! ATATTTGCTTAAATCTAGGA+AGG + chr8_2:18337796-18337815 Msa1238310:intron 25.0%
! TTAAAGGTTACTATCATAGA+GGG - chr8_2:18338355-18338374 None:intergenic 25.0%
! TTTAAAGGTTACTATCATAG+AGG - chr8_2:18338356-18338375 None:intergenic 25.0%
! ATAGTAACCTTTAAATCCAA+TGG + chr8_2:18338361-18338380 Msa1238310:intron 25.0%
! TTCCAAATAACTAAACAACT+CGG - chr8_2:18338389-18338408 None:intergenic 25.0%
! TATAGTGTTTATATGTTTCC+AGG + chr8_2:18338471-18338490 Msa1238310:intron 25.0%
!! CACTTCTCTATTTTATAATG+AGG + chr8_2:18338723-18338742 Msa1238310:intron 25.0%
!!! GATTTAGTCTTTTGAGAAAA+AGG - chr8_2:18338807-18338826 None:intergenic 25.0%
! TAAAATGAGAAAGTCTATCA+TGG - chr8_2:18338913-18338932 None:intergenic 25.0%
! ATTATCATGTAAGAAGTTGT+TGG + chr8_2:18339346-18339365 Msa1238310:intron 25.0%
!!! AAGTGGTTGTTGTATTTTAA+AGG - chr8_2:18340011-18340030 None:intergenic 25.0%
! AAAGAAACCAAATCCAATTA+CGG + chr8_2:18340116-18340135 Msa1238310:intron 25.0%
! TGTCGGTGTAAAAAAATTTA+CGG + chr8_2:18340239-18340258 Msa1238310:intron 25.0%
!! ATCAATTAATTTGATGGCTT+AGG - chr8_2:18340507-18340526 None:intergenic 25.0%
!!! ACATCCCGTTATATTTTTTA+TGG - chr8_2:18340640-18340659 None:intergenic 25.0%
! ATGAACATAAAATAGTCGTT+AGG - chr8_2:18340700-18340719 None:intergenic 25.0%
! CATAATAGATTGTCATTACT+TGG - chr8_2:18340763-18340782 None:intergenic 25.0%
! AACAAAATATGGACATACAA+TGG - chr8_2:18340791-18340810 None:intergenic 25.0%
! CTTGACATTTGAACAAAATA+TGG - chr8_2:18340802-18340821 None:intergenic 25.0%
!! CATATTTTGTTCAAATGTCA+AGG + chr8_2:18340800-18340819 Msa1238310:intron 25.0%
!!! ACAAAACAATTTTTTTTGGG+AGG + chr8_2:18340856-18340875 Msa1238310:intron 25.0%
! CCAATATCATGTAAATTACA+GGG - chr8_2:18340956-18340975 None:intergenic 25.0%
! ACCAATATCATGTAAATTAC+AGG - chr8_2:18340957-18340976 None:intergenic 25.0%
!!! GATATTGGTTTTCAATTCAA+CGG + chr8_2:18340968-18340987 Msa1238310:intron 25.0%
! TCAAAGAACAAATATTCAGA+AGG - chr8_2:18341230-18341249 None:intergenic 25.0%
!!! ATAGAGTTTTGAGATTGTAA+GGG - chr8_2:18341328-18341347 None:intergenic 25.0%
!!! AATAGAGTTTTGAGATTGTA+AGG - chr8_2:18341329-18341348 None:intergenic 25.0%
CTATGGATGTACAATGAATA+TGG + chr8_2:18337748-18337767 Msa1238310:intron 30.0%
TTTAAACATGAAACATGACG+TGG - chr8_2:18337775-18337794 None:intergenic 30.0%
TGAGTATTATTGGATGCTTA+TGG + chr8_2:18337951-18337970 Msa1238310:intron 30.0%
TCTGTCATTGTATTAACCAA+GGG + chr8_2:18338002-18338021 Msa1238310:intron 30.0%
AGAAATGGACATTCAATACA+AGG + chr8_2:18338028-18338047 Msa1238310:intron 30.0%
GTCATTAAAATACGTTAACG+TGG + chr8_2:18338255-18338274 Msa1238310:intron 30.0%
ATCCGAGTTGTTTAGTTATT+TGG + chr8_2:18338384-18338403 Msa1238310:intron 30.0%
GTTGATTAAGTAAACAGCTT+TGG - chr8_2:18338590-18338609 None:intergenic 30.0%
GCTGTTTACTTAATCAACAT+TGG + chr8_2:18338592-18338611 Msa1238310:CDS 30.0%
GTTTACTTAATCAACATTGG+AGG + chr8_2:18338595-18338614 Msa1238310:CDS 30.0%
! TTTTTCATGAGTGTATAAGC+TGG - chr8_2:18338644-18338663 None:intergenic 30.0%
TCATGAAAAATACGTATCCA+TGG + chr8_2:18338654-18338673 Msa1238310:CDS 30.0%
ATTTGAGAATTCCTTAACCA+TGG + chr8_2:18339090-18339109 Msa1238310:intron 30.0%
TCAACTGTGTCAAGTAATAT+GGG + chr8_2:18339475-18339494 Msa1238310:intron 30.0%
GTAACTTACCAAATTTGGAA+GGG - chr8_2:18339928-18339947 None:intergenic 30.0%
CTTCCAAATTTGGTAAGTTA+CGG + chr8_2:18339927-18339946 Msa1238310:intron 30.0%
TTAAAGGTGGAGATTGAAAA+TGG - chr8_2:18339995-18340014 None:intergenic 30.0%
!! TGGTTGTTGTATTTTAAAGG+TGG - chr8_2:18340008-18340027 None:intergenic 30.0%
AAATATGCCGTAATTGGATT+TGG - chr8_2:18340126-18340145 None:intergenic 30.0%
AAATATGGACATACAATGGT+TGG - chr8_2:18340787-18340806 None:intergenic 30.0%
ATGCCAAAATTATGTCCATT+AGG + chr8_2:18340825-18340844 Msa1238310:intron 30.0%
TGCCAAAATTATGTCCATTA+GGG + chr8_2:18340826-18340845 Msa1238310:intron 30.0%
CCCTGTAATTTACATGATAT+TGG + chr8_2:18340953-18340972 Msa1238310:intron 30.0%
!! AACGGTGAGTTTTGTAATAT+AGG + chr8_2:18340986-18341005 Msa1238310:intron 30.0%
!! GGCTTAATTTGATGATGAAA+AGG + chr8_2:18341101-18341120 Msa1238310:intron 30.0%
AACTGTAATATCCTCTGTAT+GGG - chr8_2:18341163-18341182 None:intergenic 30.0%
GGATTATTTCCCAATATATG+TGG + chr8_2:18341279-18341298 Msa1238310:CDS 30.0%
ATTTCCACTCCACATATATT+GGG - chr8_2:18341291-18341310 None:intergenic 30.0%
CTCTGTCATTGTATTAACCA+AGG + chr8_2:18338001-18338020 Msa1238310:intron 35.0%
ATTAACCAAGGGTTGAGAAA+TGG + chr8_2:18338013-18338032 Msa1238310:intron 35.0%
TCAATACAAGGACAGATTTG+TGG + chr8_2:18338040-18338059 Msa1238310:intron 35.0%
AGAATGTCAAGAACGTATTG+AGG + chr8_2:18338527-18338546 Msa1238310:CDS 35.0%
AAATACGTATCCATGGTAGT+TGG + chr8_2:18338661-18338680 Msa1238310:CDS 35.0%
AGTAAGATTACCAACTACCA+TGG - chr8_2:18338674-18338693 None:intergenic 35.0%
! TATAATGAGGCATTCTTGCA+TGG + chr8_2:18338736-18338755 Msa1238310:intron 35.0%
TAAAGGAGAATGTTAACTCC+TGG + chr8_2:18338960-18338979 Msa1238310:intron 35.0%
AAAGGAGAATGTTAACTCCT+GGG + chr8_2:18338961-18338980 Msa1238310:intron 35.0%
TCAACTAGGTCATCTATTGT+GGG - chr8_2:18339263-18339282 None:intergenic 35.0%
GTCAACTGTGTCAAGTAATA+TGG + chr8_2:18339474-18339493 Msa1238310:intron 35.0%
TTTCAGGGAATACATGAGAT+TGG + chr8_2:18339674-18339693 Msa1238310:intron 35.0%
ATTCTTAACCAACCATCTCT+TGG + chr8_2:18339713-18339732 Msa1238310:CDS 35.0%
! TTTACAAATGCCTTGATGGT+TGG - chr8_2:18339746-18339765 None:intergenic 35.0%
! ACCATCAAGGCATTTGTAAA+TGG + chr8_2:18339746-18339765 Msa1238310:CDS 35.0%
ACCATTTACAAATGCCTTGA+TGG - chr8_2:18339750-18339769 None:intergenic 35.0%
!! TAGTTTGGTGTTGTGTACTT+GGG - chr8_2:18339813-18339832 None:intergenic 35.0%
!! ATAGTTTGGTGTTGTGTACT+TGG - chr8_2:18339814-18339833 None:intergenic 35.0%
CTTAAGTTCCACTGATAGTT+TGG - chr8_2:18339828-18339847 None:intergenic 35.0%
ATAAGCAACCCTTCCAAATT+TGG + chr8_2:18339917-18339936 Msa1238310:CDS 35.0%
CGTAACTTACCAAATTTGGA+AGG - chr8_2:18339929-18339948 None:intergenic 35.0%
ACTTTCTCTCTCATGTTTGA+TGG + chr8_2:18340051-18340070 Msa1238310:intron 35.0%
! TCATGTTTGATGGTTGAGAT+TGG + chr8_2:18340061-18340080 Msa1238310:intron 35.0%
! TTGATGGTTGAGATTGGAAA+TGG + chr8_2:18340067-18340086 Msa1238310:intron 35.0%
!! GTCCCTAATGGACATAATTT+TGG - chr8_2:18340831-18340850 None:intergenic 35.0%
!!! GTTTTGTTTTTCGTCCCTAA+TGG - chr8_2:18340843-18340862 None:intergenic 35.0%
TGAAAAGGTTTGAAAGAAGC+AGG + chr8_2:18341116-18341135 Msa1238310:intron 35.0%
CAACTGTAATATCCTCTGTA+TGG - chr8_2:18341164-18341183 None:intergenic 35.0%
TACAGAGGATATTACAGTTG+TGG + chr8_2:18341164-18341183 Msa1238310:CDS 35.0%
ATTTCCCAATATATGTGGAG+TGG + chr8_2:18341284-18341303 Msa1238310:CDS 35.0%
GATTTCCACTCCACATATAT+TGG - chr8_2:18341292-18341311 None:intergenic 35.0%
AACTCAAAAACTTGGAGCAG+AGG + chr8_2:18337723-18337742 Msa1238310:CDS 40.0%
TTGTTGATGTGATCTACAGC+TGG + chr8_2:18337868-18337887 Msa1238310:intron 40.0%
AATGTCCATTTCTCAACCCT+TGG - chr8_2:18338021-18338040 None:intergenic 40.0%
CTCGGATCCATTGGATTTAA+AGG - chr8_2:18338371-18338390 None:intergenic 40.0%
ACTAAACAACTCGGATCCAT+TGG - chr8_2:18338380-18338399 None:intergenic 40.0%
AACGTATTGAGGCAGAAACT+AGG + chr8_2:18338538-18338557 Msa1238310:CDS 40.0%
AAGGAGAATGTTAACTCCTG+GGG + chr8_2:18338962-18338981 Msa1238310:intron 40.0%
ATTATGGGTCATGCTAACCA+TGG - chr8_2:18339110-18339129 None:intergenic 40.0%
GTCAACTAGGTCATCTATTG+TGG - chr8_2:18339264-18339283 None:intergenic 40.0%
CTGTGTCAAGTAATATGGGA+CGG + chr8_2:18339479-18339498 Msa1238310:intron 40.0%
TCAAGTAATATGGGACGGAA+GGG + chr8_2:18339484-18339503 Msa1238310:intron 40.0%
AGGGAATACATGAGATTGGA+GGG + chr8_2:18339678-18339697 Msa1238310:intron 40.0%
AGATTGGAGGGAGGAAATTT+GGG + chr8_2:18339690-18339709 Msa1238310:CDS 40.0%
GAAAACAACCAAGAGATGGT+TGG - chr8_2:18339724-18339743 None:intergenic 40.0%
GTTGGAAAACAACCAAGAGA+TGG - chr8_2:18339728-18339747 None:intergenic 40.0%
!! TGGTTGTTTTCCAACCATCA+AGG + chr8_2:18339733-18339752 Msa1238310:CDS 40.0%
ACACAACACCAAACTATCAG+TGG + chr8_2:18339817-18339836 Msa1238310:CDS 40.0%
CCAAATTTGGTAAGTTACGG+CGG + chr8_2:18339930-18339949 Msa1238310:intron 40.0%
GACACAGGAGGTAAAAGATT+TGG - chr8_2:18340485-18340504 None:intergenic 40.0%
! AATTTGATGGCTTAGGACAC+AGG - chr8_2:18340500-18340519 None:intergenic 40.0%
AGAGGATATTACAGTTGTGG+AGG + chr8_2:18341167-18341186 Msa1238310:CDS 40.0%
TCTACTCATCCTACTGAAAC+TGG + chr8_2:18341251-18341270 Msa1238310:CDS 40.0%
ATCCTACTGAAACTGGTAGT+AGG + chr8_2:18341258-18341277 Msa1238310:CDS 40.0%
ATCCTACTACCAGTTTCAGT+AGG - chr8_2:18341263-18341282 None:intergenic 40.0%
!! AGTGGAAATCAAAGTATCGC+CGG + chr8_2:18341302-18341321 Msa1238310:CDS 40.0%
!!! AGTTTTGAGATTGTAAGGGC+CGG - chr8_2:18341324-18341343 None:intergenic 40.0%
AACTTGGAGCAGAGGAACTA+TGG + chr8_2:18337731-18337750 Msa1238310:CDS 45.0%
! ATCTTGCTCGAGAAGCATGA+GGG - chr8_2:18337981-18338000 None:intergenic 45.0%
GTGTCTTTAGATCTGTCACC+TGG - chr8_2:18338492-18338511 None:intergenic 45.0%
TGAAGAAACCACATCTCTGC+TGG + chr8_2:18338564-18338583 Msa1238310:CDS 45.0%
AATGTTAACTCCTGGGGCAA+TGG + chr8_2:18338968-18338987 Msa1238310:intron 45.0%
TATTCCTTAACCATTGCCCC+AGG - chr8_2:18338981-18339000 None:intergenic 45.0%
GGTCATGCTAACCATGGTTA+AGG - chr8_2:18339104-18339123 None:intergenic 45.0%
GTCATCTATTGTGGGACAGA+GGG - chr8_2:18339255-18339274 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+AGG + chr8_2:18339483-18339502 Msa1238310:intron 45.0%
CAAGTAATATGGGACGGAAG+GGG + chr8_2:18339485-18339504 Msa1238310:intron 45.0%
CAGGGAATACATGAGATTGG+AGG + chr8_2:18339677-18339696 Msa1238310:intron 45.0%
GAATACATGAGATTGGAGGG+AGG + chr8_2:18339681-18339700 Msa1238310:CDS 45.0%
GAGATTGGAGGGAGGAAATT+TGG + chr8_2:18339689-18339708 Msa1238310:CDS 45.0%
CCGCCGTAACTTACCAAATT+TGG - chr8_2:18339933-18339952 None:intergenic 45.0%
TTGGTAAGTTACGGCGGATA+TGG + chr8_2:18339936-18339955 Msa1238310:intron 45.0%
AGGTTTGAAAGAAGCAGGAG+TGG + chr8_2:18341121-18341140 Msa1238310:intron 45.0%
!! AATTAAATTATAATAAAAAG+TGG - chr8_2:18340028-18340047 None:intergenic 5.0%
! TCTTGCTCGAGAAGCATGAG+GGG - chr8_2:18337980-18337999 None:intergenic 50.0%
! GATCTTGCTCGAGAAGCATG+AGG - chr8_2:18337982-18338001 None:intergenic 50.0%
AACTCCTGGGGCAATGGTTA+AGG + chr8_2:18338974-18338993 Msa1238310:intron 50.0%
GGTCATCTATTGTGGGACAG+AGG - chr8_2:18339256-18339275 None:intergenic 50.0%
!! TTGGTGTTGTGTACTTGGGC+AGG - chr8_2:18339809-18339828 None:intergenic 50.0%
! TTGATGGCTTAGGACACAGG+AGG - chr8_2:18340497-18340516 None:intergenic 50.0%
! AGCTTTGGCCAGCAGAGATG+TGG - chr8_2:18338575-18338594 None:intergenic 55.0%
!! TGTGGTAGTGGCCCATACAG+AGG + chr8_2:18341149-18341168 Msa1238310:CDS 55.0%
GAAGCAGGAGTGGCATGCTG+TGG + chr8_2:18341131-18341150 Msa1238310:CDS 60.0%
GGAGTGGCATGCTGTGGTAG+TGG + chr8_2:18341137-18341156 Msa1238310:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 18337717 18341358 18337717 ID=Msa1238310;Name=Msa1238310
chr8_2 mRNA 18337717 18341358 18337717 ID=Msa1238310-mRNA-1;Parent=Msa1238310;Name=Msa1238310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.75|1|1|4|0|248
chr8_2 exon 18337717 18337755 18337717 ID=Msa1238310-mRNA-1:exon:6900;Parent=Msa1238310-mRNA-1
chr8_2 exon 18338493 18338705 18338493 ID=Msa1238310-mRNA-1:exon:6901;Parent=Msa1238310-mRNA-1
chr8_2 exon 18339680 18339938 18339680 ID=Msa1238310-mRNA-1:exon:6902;Parent=Msa1238310-mRNA-1
chr8_2 exon 18341123 18341358 18341123 ID=Msa1238310-mRNA-1:exon:6903;Parent=Msa1238310-mRNA-1
chr8_2 CDS 18337717 18337755 18337717 ID=Msa1238310-mRNA-1:cds;Parent=Msa1238310-mRNA-1
chr8_2 CDS 18338493 18338705 18338493 ID=Msa1238310-mRNA-1:cds;Parent=Msa1238310-mRNA-1
chr8_2 CDS 18339680 18339938 18339680 ID=Msa1238310-mRNA-1:cds;Parent=Msa1238310-mRNA-1
chr8_2 CDS 18341123 18341358 18341123 ID=Msa1238310-mRNA-1:cds;Parent=Msa1238310-mRNA-1
Gene Sequence

>Msa1238310

ATGAGAAACTCAAAAACTTGGAGCAGAGGAACTATGGATGTGACAGATCTAAAGACACAATTGACTTATTTCAAGAATGTCAAGAACGTATTGAGGCAGAAACTAGGAGATGAAGAAACCACATCTCTGCTGGCCAAAGCTGTTTACTTAATCAACATTGGAGGCAATGATTATTTTGTAGAAAATTCCAGCTTATACACTCATGAAAAATACGTATCCATGGTAGTTGGTAATCTTACTACTGTGATCAAAGGAATACATGAGATTGGAGGGAGGAAATTTGGGATTCTTAACCAACCATCTCTTGGTTGTTTTCCAACCATCAAGGCATTTGTAAATGGTACTAAATCAGTTGCTTGCATTGAAGAGTATTCAGCACCTGCCCAAGTACACAACACCAAACTATCAGTGGAACTTAAGAATTTAACAAAACAGATCAAAGGATTTAAATATTCATATTTTGATTTCTATCATCTATCTTTTGAAGTCATAAGCAACCCTTCCAAATTTGGTTTGAAAGAAGCAGGAGTGGCATGCTGTGGTAGTGGCCCATACAGAGGATATTACAGTTGTGGAGGTAAAAGAGAAGTAAAAGATTATGACTTGTGTGAGAATCCTTCTGAATATTTGTTCTTTGACTCTACTCATCCTACTGAAACTGGTAGTAGGATTATTTCCCAATATATGTGGAGTGGAAATCAAAGTATCGCCGGCCCTTACAATCTCAAAACTCTATTTGAAGAATAG
Protein sequence

>Msa1238310

MRNSKTWSRGTMDVTDLKTQLTYFKNVKNVLRQKLGDEETTSLLAKAVYLINIGGNDYFVENSSLYTHEKYVSMVVGNLTTVIKGIHEIGGRKFGILNQPSLGCFPTIKAFVNGTKSVACIEEYSAPAQVHNTKLSVELKNLTKQIKGFKYSYFDFYHLSFEVISNPSKFGLKEAGVACCGSGPYRGYYSCGGKREVKDYDLCENPSEYLFFDSTHPTETGSRIISQYMWSGNQSIAGPYNLKTLFEE*