AlfalfaGEDB | Msa0881150

M. sativa cultivar zhongmu-4 / Msa0881150

KEGG: -
GO: -
PFAM: PF05620.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881150	XP_003610252.1	98.266	173	3	0	1	173	1	173	2.17e-124	357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881150	sp\|Q54UB0\|TM208_DICDI	37.209	129	81	0	1	129	1	129	2.87e-25	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881150	G7JED5	98.266	173	3	0	1	173	1	173	1.04e-124	357

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0183260	Msa0881150	0.803299	3.724458e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881150	MtrunA17_Chr4g0073431	98.266	173	3	0	1	173	1	173	2.00e-128	357

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881150	AT2G23940.2	77.457	173	39	1	173	1	173	1.14e-103	295
Msa0881150	AT2G23940.1	77.457	173	39	1	173	1	173	1.14e-103	295
Msa0881150	AT2G23940.3	77.457	173	39	1	173	1	173	1.14e-103	295
Msa0881150	AT4G30500.1	72.254	173	48	1	173	1	173	4.09e-94	271

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Find 70 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTTAATCAAGCCAA+AGG	0.572435	6_1:+28136547	None:intergenic
AAACCTAGTTATACCCAAGA+CGG	0.654127	6_1:-28139309	Msa0881150:CDS
AAATAGAGGAGCACAAGAAA+AGG	0.501007	6_1:+28136199	None:intergenic
AAGGGAAAAGATGGAGAAGA+AGG	0.445950	6_1:-28136388	Msa0881150:CDS
AATCCTTTGGCTTGATTAAA+GGG	0.267308	6_1:-28136550	Msa0881150:CDS
AATTATCCAAGATTGATGGA+GGG	0.626335	6_1:-28136290	Msa0881150:three_prime_UTR
AATTTATAAAAGTTCTTGTA+AGG	0.400644	6_1:-28136142	Msa0881150:three_prime_UTR
ACACGAACTAGATAGTTTGC+TGG	0.460935	6_1:-28136342	Msa0881150:exon
ACCCAATTATCCAAGATTGA+TGG	0.502312	6_1:-28136294	Msa0881150:three_prime_UTR
ACGTTGTTTGGTGAGAGAAA+TGG	0.507991	6_1:-28139691	Msa0881150:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTCAAATCACCTTGCTA+GGG	-	chr6_1:28136135-28136154	Msa0881150:three_prime_UTR	30.0%
ATCTTAGCAAGTTGTTGATA+GGG	+	chr6_1:28136363-28136382	None:intergenic	30.0%
AAAAGCCCTTATAAGCTTAT+AGG	+	chr6_1:28136646-28136665	None:intergenic	30.0%
TTTGTGAATAACATGGTACT+CGG	-	chr6_1:28136853-28136872	Msa0881150:intron	30.0%
GATAATTCTTCACTTACTCT+TGG	-	chr6_1:28137154-28137173	Msa0881150:intron	30.0%
ACAAAGATATGTCATCTACA+AGG	-	chr6_1:28137421-28137440	Msa0881150:intron	30.0%
AAGAAATAGAGGAATTTGAG+AGG	-	chr6_1:28137588-28137607	Msa0881150:intron	30.0%
GAACTCAAAAATTGTATTGG+AGG	-	chr6_1:28137667-28137686	Msa0881150:intron	30.0%
AGCAAATCTAATGAACCTAT+AGG	+	chr6_1:28137907-28137926	None:intergenic	30.0%
AGCAAATCTAATGAACCTAT+AGG	+	chr6_1:28137907-28137926	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28135947	28139771	28135947	ID=Msa0881150;Name=Msa0881150
chr6_1	mRNA	28135947	28139771	28135947	ID=Msa0881150-mRNA-1;Parent=Msa0881150;Name=Msa0881150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=77\|1\|1\|1\|1\|1\|5\|403\|173
chr6_1	exon	28135947	28136442	28135947	ID=Msa0881150-mRNA-1:exon:7058;Parent=Msa0881150-mRNA-1
chr6_1	exon	28136529	28136594	28136529	ID=Msa0881150-mRNA-1:exon:7057;Parent=Msa0881150-mRNA-1
chr6_1	exon	28138444	28138528	28138444	ID=Msa0881150-mRNA-1:exon:7056;Parent=Msa0881150-mRNA-1
chr6_1	exon	28139261	28139454	28139261	ID=Msa0881150-mRNA-1:exon:7055;Parent=Msa0881150-mRNA-1
chr6_1	exon	28139611	28139771	28139611	ID=Msa0881150-mRNA-1:exon:7054;Parent=Msa0881150-mRNA-1
chr6_1	five_prime_UTR	28139695	28139771	28139695	ID=Msa0881150-mRNA-1:five_prime_utr;Parent=Msa0881150-mRNA-1
chr6_1	CDS	28139611	28139694	28139611	ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1
chr6_1	CDS	28139261	28139454	28139261	ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1
chr6_1	CDS	28138444	28138528	28138444	ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1
chr6_1	CDS	28136529	28136594	28136529	ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1
chr6_1	CDS	28136350	28136442	28136350	ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1
chr6_1	three_prime_UTR	28135947	28136349	28135947	ID=Msa0881150-mRNA-1:three_prime_utr;Parent=Msa0881150-mRNA-1

Gene Sequence

>Msa0881150

ATGGCGAATCAAGGTGCTAAGAAACGCAAGGAAGAGAACTCTCGTCACATCACCAAGCTCCGCCACATCATCATCGCCTGCAACGTTATTTATGTAATAATTAGGATGTTAATCTTCCATTCTAGCTTCACCTGGATGCATTGGATTGGCTTGGTTGTGACCTCTCTAGCTTATTATTTTCCCTATCAACAACTTGCTAAGATGGCAAAACCTAGTTATACCCAAGACGGTGAGCTTTTAGATGGTGGTTTTGATATGACTACTGGTGGAGTTTGCGGCTATTTACATGATGTTATCTACATAACATGCTTTGTGCAAGTCGCTTCCATCATCTCTGGAAAGTTCTGGTACATATATCTTGTGATACCAGCATTTGGAGCATACCAATCCTTTGGCTTGATTAAAGGGTTTTTGCCACAAGGTTCAGAGGAATCGGTTGAAGATGAAAAGACCCGCAAGAAAAGGGAAAAGATGGAGAAGAAGGCATCCAGACCTAAGTTTGTCAAGACACGAACTAGATAG

Protein sequence

>Msa0881150

MANQGAKKRKEENSRHITKLRHIIIACNVIYVIIRMLIFHSSFTWMHWIGLVVTSLAYYFPYQQLAKMAKPSYTQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVASIISGKFWYIYLVIPAFGAYQSFGLIKGFLPQGSEESVEDEKTRKKREKMEKKASRPKFVKTRTR*