Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881150 | XP_003610252.1 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 2.17e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881150 | sp|Q54UB0|TM208_DICDI | 37.209 | 129 | 81 | 0 | 1 | 129 | 1 | 129 | 2.87e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881150 | G7JED5 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 1.04e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183260 | Msa0881150 | 0.803299 | 3.724458e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881150 | MtrunA17_Chr4g0073431 | 98.266 | 173 | 3 | 0 | 1 | 173 | 1 | 173 | 2.00e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881150 | AT2G23940.2 | 77.457 | 173 | 39 | 0 | 1 | 173 | 1 | 173 | 1.14e-103 | 295 |
| Msa0881150 | AT2G23940.1 | 77.457 | 173 | 39 | 0 | 1 | 173 | 1 | 173 | 1.14e-103 | 295 |
| Msa0881150 | AT2G23940.3 | 77.457 | 173 | 39 | 0 | 1 | 173 | 1 | 173 | 1.14e-103 | 295 |
| Msa0881150 | AT4G30500.1 | 72.254 | 173 | 48 | 0 | 1 | 173 | 1 | 173 | 4.09e-94 | 271 |
Find 70 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATCAATCTTGGATAAT+TGG | 0.115218 | 6_1:+28136292 | None:intergenic |
| TTTCTTGTGCTCCTCTATTT+AGG | 0.119107 | 6_1:-28136196 | Msa0881150:three_prime_UTR |
| CAATCCTTTGGCTTGATTAA+AGG | 0.151562 | 6_1:-28136551 | Msa0881150:CDS |
| AGGTTATTTATGTAATAATT+AGG | 0.232573 | 6_1:-28139434 | Msa0881150:CDS |
| TGAAACATTTCAAGAGTTAA+TGG | 0.248219 | 6_1:-28136053 | Msa0881150:three_prime_UTR |
| TTCTTGTGCTCCTCTATTTA+GGG | 0.258325 | 6_1:-28136195 | Msa0881150:three_prime_UTR |
| AATCCTTTGGCTTGATTAAA+GGG | 0.267308 | 6_1:-28136550 | Msa0881150:CDS |
| CATCTTAGCAAGTTGTTGAT+AGG | 0.292767 | 6_1:+28139335 | None:intergenic |
| TCGCCACCGGTAACGTTGTT+TGG | 0.355878 | 6_1:-28139703 | Msa0881150:five_prime_UTR |
| CTCTCACCAAACAACGTTAC+CGG | 0.360039 | 6_1:+28139697 | None:intergenic |
| ATCTAAAAGCTCACCGTCTT+GGG | 0.363264 | 6_1:+28139296 | None:intergenic |
| ATGGTGTGGAATTGTGTAAA+TGG | 0.387512 | 6_1:-28136034 | Msa0881150:three_prime_UTR |
| TGACTACTGGTGGAGTTTGC+GGG | 0.388521 | 6_1:-28139260 | Msa0881150:intron |
| CCATCATCTCTGGAAAGTTC+TGG | 0.397340 | 6_1:-28138459 | Msa0881150:CDS |
| TCCATCAATCTTGGATAATT+GGG | 0.400313 | 6_1:+28136293 | None:intergenic |
| AATTTATAAAAGTTCTTGTA+AGG | 0.400644 | 6_1:-28136142 | Msa0881150:three_prime_UTR |
| ATTGGGTGATATTGTGCAAC+TGG | 0.404749 | 6_1:+28136310 | None:intergenic |
| AGAGAAAGAGAGTACGTTGC+AGG | 0.407204 | 6_1:+28139596 | None:intergenic |
| TTTGGAGCATACCAATCCTT+TGG | 0.411793 | 6_1:-28136563 | Msa0881150:CDS |
| ATTTGTCAGATACCAGCATT+TGG | 0.414553 | 6_1:-28136581 | Msa0881150:intron |
| ATGAAAAGACCCGCAAGAAA+AGG | 0.419275 | 6_1:-28136407 | Msa0881150:CDS |
| GTAAAACCCTCCATCAATCT+TGG | 0.421219 | 6_1:+28136284 | None:intergenic |
| GGACTAGCCTCTGGGATACT+TGG | 0.427013 | 6_1:-28136121 | Msa0881150:three_prime_UTR |
| CTGGATGCATTGGATTGGCT+TGG | 0.440018 | 6_1:-28139385 | Msa0881150:CDS |
| CTAGCTTCACCTGGATGCAT+TGG | 0.441403 | 6_1:-28139395 | Msa0881150:CDS |
| TGTCTTGACAAACTTAGGTC+TGG | 0.445497 | 6_1:+28136362 | None:intergenic |
| AAGGGAAAAGATGGAGAAGA+AGG | 0.445950 | 6_1:-28136388 | Msa0881150:CDS |
| CTATCAACAACTTGCTAAGA+TGG | 0.453545 | 6_1:-28139334 | Msa0881150:CDS |
| CAAGTCGCTTCCATCATCTC+TGG | 0.460619 | 6_1:-28138469 | Msa0881150:CDS |
| ACACGAACTAGATAGTTTGC+TGG | 0.460935 | 6_1:-28136342 | Msa0881150:exon |
| CATCTAAAAGCTCACCGTCT+TGG | 0.461805 | 6_1:+28139295 | None:intergenic |
| TTCTTGTAAGGACTAGCCTC+TGG | 0.463137 | 6_1:-28136130 | Msa0881150:three_prime_UTR |
| TTCACCTGGATGCATTGGAT+TGG | 0.464072 | 6_1:-28139390 | Msa0881150:CDS |
| TGAAAAGACCCGCAAGAAAA+GGG | 0.467032 | 6_1:-28136406 | Msa0881150:CDS |
| CCGCAAGAAAAGGGAAAAGA+TGG | 0.467797 | 6_1:-28136397 | Msa0881150:CDS |
| CAATGCACCTTTCCAAAAGC+TGG | 0.470036 | 6_1:-28135946 | None:intergenic |
| GCATCCAGGTGAAGCTAGAA+TGG | 0.474161 | 6_1:+28139400 | None:intergenic |
| CCAGAACTTTCCAGAGATGA+TGG | 0.477172 | 6_1:+28138459 | None:intergenic |
| TGTGTAAATGGATTTAACCT+TGG | 0.484803 | 6_1:-28136022 | Msa0881150:three_prime_UTR |
| ATCTTAGCAAGTTGTTGATA+GGG | 0.495823 | 6_1:+28139336 | None:intergenic |
| AAATAGAGGAGCACAAGAAA+AGG | 0.501007 | 6_1:+28136199 | None:intergenic |
| ACCCAATTATCCAAGATTGA+TGG | 0.502312 | 6_1:-28136294 | Msa0881150:three_prime_UTR |
| ATGACTACTGGTGGAGTTTG+CGG | 0.504873 | 6_1:-28139261 | Msa0881150:CDS |
| ACGTTGTTTGGTGAGAGAAA+TGG | 0.507991 | 6_1:-28139691 | Msa0881150:exon |
| TCTTCCATTCTAGCTTCACC+TGG | 0.508034 | 6_1:-28139404 | Msa0881150:CDS |
| GATTGGTATGCTCCAAATGC+TGG | 0.509174 | 6_1:+28136569 | None:intergenic |
| GTTCGTGTCTTGACAAACTT+AGG | 0.524815 | 6_1:+28136357 | None:intergenic |
| TCACCGTCTTGGGTATAACT+AGG | 0.527034 | 6_1:+28139306 | None:intergenic |
| GTGAGAGAAATGGCGAATCA+AGG | 0.541390 | 6_1:-28139681 | Msa0881150:exon |
| GATGATGATGTGGCGGAGCT+TGG | 0.543319 | 6_1:+28139620 | None:intergenic |
| CAAGCCAATCCAATGCATCC+AGG | 0.546808 | 6_1:+28139386 | None:intergenic |
| CTTTAATCAAGCCAAAGGAT+TGG | 0.550609 | 6_1:+28136552 | None:intergenic |
| GTAAATGGATTTAACCTTGG+CGG | 0.559493 | 6_1:-28136019 | Msa0881150:three_prime_UTR |
| AAACCCTTTAATCAAGCCAA+AGG | 0.572435 | 6_1:+28136547 | None:intergenic |
| CAATTATCCAAGATTGATGG+AGG | 0.583920 | 6_1:-28136291 | Msa0881150:three_prime_UTR |
| GGGAAAATAATAAGCTAGAG+AGG | 0.590375 | 6_1:+28139356 | None:intergenic |
| TTGTGAGATTTACACCGCCA+AGG | 0.599371 | 6_1:+28136005 | None:intergenic |
| TCTTGTAAGGACTAGCCTCT+GGG | 0.601747 | 6_1:-28136129 | Msa0881150:three_prime_UTR |
| AGCAGCGACTTCATCGCCAC+CGG | 0.602292 | 6_1:-28139716 | Msa0881150:five_prime_UTR |
| GTTCTGGTACATATATCTTG+TGG | 0.618251 | 6_1:-28138443 | Msa0881150:intron |
| AATTATCCAAGATTGATGGA+GGG | 0.626335 | 6_1:-28136290 | Msa0881150:three_prime_UTR |
| CGTTGCAGGCGATGATGATG+TGG | 0.641934 | 6_1:+28139610 | None:intergenic |
| TCAAGGTGCTAAGAAACGCA+AGG | 0.648365 | 6_1:-28139664 | Msa0881150:CDS |
| AAACCTAGTTATACCCAAGA+CGG | 0.654127 | 6_1:-28139309 | Msa0881150:CDS |
| CATTTCAAGAGTTAATGGTG+TGG | 0.676075 | 6_1:-28136048 | Msa0881150:three_prime_UTR |
| TGCAGGCGATGATGATGTGG+CGG | 0.680633 | 6_1:+28139613 | None:intergenic |
| TCACCAAACAACGTTACCGG+TGG | 0.686562 | 6_1:+28139700 | None:intergenic |
| GACCATACCTCTGAACCTTG+TGG | 0.690357 | 6_1:+28136521 | None:intergenic |
| TTGGGTGATATTGTGCAACT+GGG | 0.699970 | 6_1:+28136311 | None:intergenic |
| TCATAGTCCAAGTATCCCAG+AGG | 0.764115 | 6_1:+28136114 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAAATAAATAAATACT+AGG | + | chr6_1:28138087-28138106 | None:intergenic | 10.0% |
| !! | ATTTATTTATGAATTATATC+AGG | - | chr6_1:28138094-28138113 | Msa0881150:intron | 10.0% |
| !! | TTTATTTATGAATTATATCA+GGG | - | chr6_1:28138095-28138114 | Msa0881150:intron | 10.0% |
| !! | ATTTATTTATGAATTATATC+AGG | - | chr6_1:28138094-28138113 | Msa0881150:intron | 10.0% |
| !! | TTTATTTATGAATTATATCA+GGG | - | chr6_1:28138095-28138114 | Msa0881150:intron | 10.0% |
| !! | AGGTTATTTATGTAATAATT+AGG | - | chr6_1:28136262-28136281 | Msa0881150:three_prime_UTR | 15.0% |
| !! | TTATTTATGAATTATATCAG+GGG | - | chr6_1:28138096-28138115 | Msa0881150:intron | 15.0% |
| !! | TTATTTATGAATTATATCAG+GGG | - | chr6_1:28138096-28138115 | Msa0881150:intron | 15.0% |
| !! | ATTTATTTACGAATTATATC+AGG | - | chr6_1:28138904-28138923 | Msa0881150:intron | 15.0% |
| !!! | AACTTTTATAAATTGTGTAA+AGG | + | chr6_1:28139548-28139567 | None:intergenic | 15.0% |
| !! | AATTTATAAAAGTTCTTGTA+AGG | - | chr6_1:28139554-28139573 | Msa0881150:intron | 15.0% |
| !! | TCCATAAACTTATCTTAATA+GGG | - | chr6_1:28136698-28136717 | Msa0881150:intron | 20.0% |
| !! | CTGTATCTTGATTTAAAAAA+TGG | - | chr6_1:28136769-28136788 | Msa0881150:intron | 20.0% |
| !!! | AAGTATTGTGTATATATTGT+AGG | - | chr6_1:28136978-28136997 | Msa0881150:intron | 20.0% |
| !! | CTTCATTTATCTATATAGTT+TGG | + | chr6_1:28137095-28137114 | None:intergenic | 20.0% |
| !!! | TATACAAAATCCTTTTCATT+TGG | - | chr6_1:28137642-28137661 | Msa0881150:intron | 20.0% |
| !!! | ATACAAAATCCTTTTCATTT+GGG | - | chr6_1:28137643-28137662 | Msa0881150:intron | 20.0% |
| !! | TTCAGAATATTATAACAACA+TGG | + | chr6_1:28137742-28137761 | None:intergenic | 20.0% |
| !!! | AAAGAGTATTTTTTTAGAGA+AGG | + | chr6_1:28137800-28137819 | None:intergenic | 20.0% |
| !! | TTCAGAATATTATAACAACA+TGG | + | chr6_1:28137742-28137761 | None:intergenic | 20.0% |
| !!! | AAAGAGTATTTTTTTAGAGA+GGG | + | chr6_1:28137800-28137819 | None:intergenic | 20.0% |
| !! | TTCAGAATATTATAACAACA+TGG | + | chr6_1:28137742-28137761 | None:intergenic | 20.0% |
| !! | TTAAAGTTGCAATCAATATT+GGG | - | chr6_1:28139008-28139027 | Msa0881150:intron | 20.0% |
| !! | ATATTGGGACATATATAAAA+TGG | - | chr6_1:28139023-28139042 | Msa0881150:intron | 20.0% |
| !! | CTCTTGTAATGATTAATAAA+GGG | + | chr6_1:28139054-28139073 | None:intergenic | 20.0% |
| !! | TCTCTTGTAATGATTAATAA+AGG | + | chr6_1:28139055-28139074 | None:intergenic | 20.0% |
| ! | TACCTGATTTATTATTGAAC+AGG | - | chr6_1:28136242-28136261 | Msa0881150:three_prime_UTR | 25.0% |
| ! | AACCTGTTCAATAATAAATC+AGG | + | chr6_1:28136247-28136266 | None:intergenic | 25.0% |
| ! | TATAAGCTTATAGGTCTAAA+GGG | + | chr6_1:28136637-28136656 | None:intergenic | 25.0% |
| ! | TTATAAGCTTATAGGTCTAA+AGG | + | chr6_1:28136638-28136657 | None:intergenic | 25.0% |
| ! | TTTAGACCTATAAGCTTATA+AGG | - | chr6_1:28136637-28136656 | Msa0881150:intron | 25.0% |
| ! | TTAGACCTATAAGCTTATAA+GGG | - | chr6_1:28136638-28136657 | Msa0881150:intron | 25.0% |
| !!! | GCTTTTTCATTAAGCTTATA+AGG | - | chr6_1:28136660-28136679 | Msa0881150:intron | 25.0% |
| ! | CTCCATAAACTTATCTTAAT+AGG | - | chr6_1:28136697-28136716 | Msa0881150:intron | 25.0% |
| ! | TCCCTATTAAGATAAGTTTA+TGG | + | chr6_1:28136702-28136721 | None:intergenic | 25.0% |
| !! | TAATCCAAATTGTGTCTTTT+GGG | - | chr6_1:28136742-28136761 | Msa0881150:intron | 25.0% |
| ! | AGATTAAGTCAAAAAACCAT+TGG | + | chr6_1:28136808-28136827 | None:intergenic | 25.0% |
| !! | TCTGACTATGAAAAAGTTTT+AGG | + | chr6_1:28137036-28137055 | None:intergenic | 25.0% |
| !! | AATAATAATTTGCCGTAAAG+AGG | - | chr6_1:28137486-28137505 | Msa0881150:intron | 25.0% |
| !! | TACAAAATCCTTTTCATTTG+GGG | - | chr6_1:28137644-28137663 | Msa0881150:intron | 25.0% |
| !!! | GAAAGAGTATTTTTTTAGAG+AGG | + | chr6_1:28137801-28137820 | None:intergenic | 25.0% |
| !!! | AAAGAGTAACTTTTTAGAGA+AGG | + | chr6_1:28138610-28138629 | None:intergenic | 25.0% |
| ! | GTTAAAGTTGCAATCAATAT+TGG | - | chr6_1:28139007-28139026 | Msa0881150:intron | 25.0% |
| ! | TGAAACATTTCAAGAGTTAA+TGG | - | chr6_1:28139643-28139662 | Msa0881150:CDS | 25.0% |
| AATTTCAAATCACCTTGCTA+GGG | - | chr6_1:28136135-28136154 | Msa0881150:three_prime_UTR | 30.0% | |
| ATCTTAGCAAGTTGTTGATA+GGG | + | chr6_1:28136363-28136382 | None:intergenic | 30.0% | |
| AAAAGCCCTTATAAGCTTAT+AGG | + | chr6_1:28136646-28136665 | None:intergenic | 30.0% | |
| ! | AGCTTATAAGGACTTTTTGA+TGG | - | chr6_1:28136672-28136691 | Msa0881150:intron | 30.0% |
| ! | GCTTATAAGGACTTTTTGAT+GGG | - | chr6_1:28136673-28136692 | Msa0881150:intron | 30.0% |
| !! | TGGATTAGCTTCAAACTTAT+AGG | + | chr6_1:28136729-28136748 | None:intergenic | 30.0% |
| ! | CTAATCCAAATTGTGTCTTT+TGG | - | chr6_1:28136741-28136760 | Msa0881150:intron | 30.0% |
| ! | ATCTTCTGTAGTTTTTCTGT+CGG | - | chr6_1:28136824-28136843 | Msa0881150:intron | 30.0% |
| !! | GGGTATTTTTGTGAATAACA+TGG | - | chr6_1:28136846-28136865 | Msa0881150:intron | 30.0% |
| TTTGTGAATAACATGGTACT+CGG | - | chr6_1:28136853-28136872 | Msa0881150:intron | 30.0% | |
| ! | TACACAATACTTTTGCATGA+TGG | + | chr6_1:28136970-28136989 | None:intergenic | 30.0% |
| GATAATTCTTCACTTACTCT+TGG | - | chr6_1:28137154-28137173 | Msa0881150:intron | 30.0% | |
| !!! | GTGGTTTACTTTTAGAATGT+AGG | - | chr6_1:28137331-28137350 | Msa0881150:intron | 30.0% |
| ACAAAGATATGTCATCTACA+AGG | - | chr6_1:28137421-28137440 | Msa0881150:intron | 30.0% | |
| ! | AAATAGAGGACTTTGGAAAA+AGG | - | chr6_1:28137551-28137570 | Msa0881150:intron | 30.0% |
| ! | AATAGAGGACTTTGGAAAAA+GGG | - | chr6_1:28137552-28137571 | Msa0881150:intron | 30.0% |
| AAGAAATAGAGGAATTTGAG+AGG | - | chr6_1:28137588-28137607 | Msa0881150:intron | 30.0% | |
| ! | ACAAAATCCTTTTCATTTGG+GGG | - | chr6_1:28137645-28137664 | Msa0881150:intron | 30.0% |
| GAACTCAAAAATTGTATTGG+AGG | - | chr6_1:28137667-28137686 | Msa0881150:intron | 30.0% | |
| !!! | TATTGGAGGAGGATTTTTTA+GGG | - | chr6_1:28137681-28137700 | Msa0881150:intron | 30.0% |
| AGCAAATCTAATGAACCTAT+AGG | + | chr6_1:28137907-28137926 | None:intergenic | 30.0% | |
| AGCAAATCTAATGAACCTAT+AGG | + | chr6_1:28137907-28137926 | None:intergenic | 30.0% | |
| AGCAAATCTAATGAACCTAT+AGG | + | chr6_1:28137907-28137926 | None:intergenic | 30.0% | |
| TATCTGACAAATGTCATGAA+GGG | + | chr6_1:28139107-28139126 | None:intergenic | 30.0% | |
| !! | AATCCTTTGGCTTGATTAAA+GGG | - | chr6_1:28139146-28139165 | Msa0881150:intron | 30.0% |
| ! | CTTGGTAAATTTTCACTTTC+AGG | - | chr6_1:28139203-28139222 | Msa0881150:intron | 30.0% |
| ! | TGTGTATGCATTTTGTGATT+AGG | - | chr6_1:28139254-28139273 | Msa0881150:intron | 30.0% |
| ! | TGCATTTTGTGATTAGGAAT+CGG | - | chr6_1:28139260-28139279 | Msa0881150:intron | 30.0% |
| TCCATCAATCTTGGATAATT+GGG | + | chr6_1:28139406-28139425 | None:intergenic | 30.0% | |
| AATTATCCAAGATTGATGGA+GGG | - | chr6_1:28139406-28139425 | Msa0881150:CDS | 30.0% | |
| TGTACATGAAAAACTAACTC+AGG | + | chr6_1:28139470-28139489 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTTCCCTAAATAG+AGG | + | chr6_1:28139514-28139533 | None:intergenic | 30.0% |
| ! | TGTGTAAATGGATTTAACCT+TGG | - | chr6_1:28139674-28139693 | Msa0881150:CDS | 30.0% |
| !!! | TCTCACAAGTGTTTTTTTAG+AGG | - | chr6_1:28139706-28139725 | Msa0881150:five_prime_UTR | 30.0% |
| !!! | CTCACAAGTGTTTTTTTAGA+GGG | - | chr6_1:28139707-28139726 | Msa0881150:five_prime_UTR | 30.0% |
| CAATTTCAAATCACCTTGCT+AGG | - | chr6_1:28136134-28136153 | Msa0881150:three_prime_UTR | 35.0% | |
| ! | GCATCGATAATTTCATGGAT+AGG | + | chr6_1:28136164-28136183 | None:intergenic | 35.0% |
| ! | CACATGCATCGATAATTTCA+TGG | + | chr6_1:28136169-28136188 | None:intergenic | 35.0% |
| GGGAAAATAATAAGCTAGAG+AGG | + | chr6_1:28136343-28136362 | None:intergenic | 35.0% | |
| CATCTTAGCAAGTTGTTGAT+AGG | + | chr6_1:28136364-28136383 | None:intergenic | 35.0% | |
| !! | CTATCAACAACTTGCTAAGA+TGG | - | chr6_1:28136362-28136381 | Msa0881150:CDS | 35.0% |
| AAACCTAGTTATACCCAAGA+CGG | - | chr6_1:28136387-28136406 | Msa0881150:CDS | 35.0% | |
| AAAAACCAGAAGAGAAGACA+AGG | + | chr6_1:28136472-28136491 | None:intergenic | 35.0% | |
| CAGATCTTCATAAGCACTTA+TGG | - | chr6_1:28136495-28136514 | Msa0881150:intron | 35.0% | |
| TCTAAAGGGATGAGTTAAAC+GGG | + | chr6_1:28136623-28136642 | None:intergenic | 35.0% | |
| GTCTAAAGGGATGAGTTAAA+CGG | + | chr6_1:28136624-28136643 | None:intergenic | 35.0% | |
| TGATCCCAAAAGACACAATT+TGG | + | chr6_1:28136749-28136768 | None:intergenic | 35.0% | |
| ! | TCTTCTGTAGTTTTTCTGTC+GGG | - | chr6_1:28136825-28136844 | Msa0881150:intron | 35.0% |
| !!! | AAAAAGTTTTAGGCTCATCC+CGG | + | chr6_1:28137026-28137045 | None:intergenic | 35.0% |
| GTTCTGGTACATATATCTTG+TGG | - | chr6_1:28137253-28137272 | Msa0881150:intron | 35.0% | |
| AAGGTTAATTAGGAGCAGAT+TGG | + | chr6_1:28137285-28137304 | None:intergenic | 35.0% | |
| TCTGCTCCTAATTAACCTTA+TGG | - | chr6_1:28137286-28137305 | Msa0881150:intron | 35.0% | |
| CTCCTAATTAACCTTATGGT+TGG | - | chr6_1:28137290-28137309 | Msa0881150:intron | 35.0% | |
| AGCCAACCATAAGGTTAATT+AGG | + | chr6_1:28137295-28137314 | None:intergenic | 35.0% | |
| !! | TTCTTTGAAGTGGTATCAGT+CGG | + | chr6_1:28137388-28137407 | None:intergenic | 35.0% |
| GATACCACTTCAAAGAATGT+AGG | - | chr6_1:28137391-28137410 | Msa0881150:intron | 35.0% | |
| ! | TAAGCCTACATTCTTTGAAG+TGG | + | chr6_1:28137398-28137417 | None:intergenic | 35.0% |
| GATATGTCATCTACAAGGTT+TGG | - | chr6_1:28137426-28137445 | Msa0881150:intron | 35.0% | |
| GGGGAACTCAAAAATTGTAT+TGG | - | chr6_1:28137664-28137683 | Msa0881150:intron | 35.0% | |
| CTCAAAAATTGTATTGGAGG+AGG | - | chr6_1:28137670-28137689 | Msa0881150:intron | 35.0% | |
| !!! | GTATTGGAGGAGGATTTTTT+AGG | - | chr6_1:28137680-28137699 | Msa0881150:intron | 35.0% |
| !!! | AGGAGGATTTTTTAGGGTTT+TGG | - | chr6_1:28137687-28137706 | Msa0881150:intron | 35.0% |
| !!! | GGAGGATTTTTTAGGGTTTT+GGG | - | chr6_1:28137688-28137707 | Msa0881150:intron | 35.0% |
| !!! | GAGGATTTTTTAGGGTTTTG+GGG | - | chr6_1:28137689-28137708 | Msa0881150:intron | 35.0% |
| !!! | AGGATTTTTTAGGGTTTTGG+GGG | - | chr6_1:28137690-28137709 | Msa0881150:intron | 35.0% |
| !! | TGAACCTATAGGCTTTGTTT+GGG | + | chr6_1:28137896-28137915 | None:intergenic | 35.0% |
| !! | ATGAACCTATAGGCTTTGTT+TGG | + | chr6_1:28137897-28137916 | None:intergenic | 35.0% |
| TTTGCTTATTAGTGCATGTC+TGG | - | chr6_1:28137921-28137940 | Msa0881150:intron | 35.0% | |
| !! | CCTTCAAGTTTGTTGCTTTA+TGG | + | chr6_1:28137977-28137996 | None:intergenic | 35.0% |
| CCATAAAGCAACAAACTTGA+AGG | - | chr6_1:28137974-28137993 | Msa0881150:intron | 35.0% | |
| AAGCAACAAACTTGAAGGAA+AGG | - | chr6_1:28137979-28137998 | Msa0881150:intron | 35.0% | |
| AGCAACAAACTTGAAGGAAA+GGG | - | chr6_1:28137980-28137999 | Msa0881150:intron | 35.0% | |
| !!! | CCATTTTGAGATTAGTCACT+AGG | + | chr6_1:28138064-28138083 | None:intergenic | 35.0% |
| CCTAGTGACTAATCTCAAAA+TGG | - | chr6_1:28138061-28138080 | Msa0881150:intron | 35.0% | |
| !! | TGAACCTATAGGCTTTGTTT+GGG | + | chr6_1:28137896-28137915 | None:intergenic | 35.0% |
| !! | ATGAACCTATAGGCTTTGTT+TGG | + | chr6_1:28137897-28137916 | None:intergenic | 35.0% |
| TTTGCTTATTAGTGCATGTC+TGG | - | chr6_1:28137921-28137940 | Msa0881150:intron | 35.0% | |
| !! | CCTTCAAGTTTGTTGCTTTA+TGG | + | chr6_1:28137977-28137996 | None:intergenic | 35.0% |
| CCATAAAGCAACAAACTTGA+AGG | - | chr6_1:28137974-28137993 | Msa0881150:intron | 35.0% | |
| AAGCAACAAACTTGAAGGAA+AGG | - | chr6_1:28137979-28137998 | Msa0881150:intron | 35.0% | |
| AGCAACAAACTTGAAGGAAA+GGG | - | chr6_1:28137980-28137999 | Msa0881150:intron | 35.0% | |
| !!! | CCATTTTGAGATTAGTCACT+AGG | + | chr6_1:28138064-28138083 | None:intergenic | 35.0% |
| CCTAGTGACTAATCTCAAAA+TGG | - | chr6_1:28138061-28138080 | Msa0881150:intron | 35.0% | |
| !! | TGAACCTATAGGCTTTGTTT+GGG | + | chr6_1:28137896-28137915 | None:intergenic | 35.0% |
| !! | ATGAACCTATAGGCTTTGTT+TGG | + | chr6_1:28137897-28137916 | None:intergenic | 35.0% |
| TTTGCTTATTAGTGCATGTC+TGG | - | chr6_1:28137921-28137940 | Msa0881150:intron | 35.0% | |
| !! | CCTTCAAGTTTGTTGCTTTA+TGG | + | chr6_1:28137977-28137996 | None:intergenic | 35.0% |
| CCATAAAGCAACAAACTTGA+AGG | - | chr6_1:28137974-28137993 | Msa0881150:intron | 35.0% | |
| AAGCAACAAACTTGAAGGAA+AGG | - | chr6_1:28137979-28137998 | Msa0881150:intron | 35.0% | |
| AGCAACAAACTTGAAGGAAA+GGG | - | chr6_1:28137980-28137999 | Msa0881150:intron | 35.0% | |
| !!! | CCATTTTGAGATTAGTCACT+GGG | + | chr6_1:28138064-28138083 | None:intergenic | 35.0% |
| GTAATCTGTACAATCAACTG+TGG | - | chr6_1:28138933-28138952 | Msa0881150:intron | 35.0% | |
| GTATCTGACAAATGTCATGA+AGG | + | chr6_1:28139108-28139127 | None:intergenic | 35.0% | |
| ATTTGTCAGATACCAGCATT+TGG | - | chr6_1:28139115-28139134 | Msa0881150:intron | 35.0% | |
| CTTTAATCAAGCCAAAGGAT+TGG | + | chr6_1:28139147-28139166 | None:intergenic | 35.0% | |
| !! | CAATCCTTTGGCTTGATTAA+AGG | - | chr6_1:28139145-28139164 | Msa0881150:intron | 35.0% |
| AAACCCTTTAATCAAGCCAA+AGG | + | chr6_1:28139152-28139171 | None:intergenic | 35.0% | |
| ! | ATTAAAGGGTTTTTGCCACA+AGG | - | chr6_1:28139160-28139179 | Msa0881150:intron | 35.0% |
| AGTTACTATGAACCTTTCTG+TGG | + | chr6_1:28139229-28139248 | None:intergenic | 35.0% | |
| ACCCAATTATCCAAGATTGA+TGG | - | chr6_1:28139402-28139421 | Msa0881150:CDS | 35.0% | |
| CTCCATCAATCTTGGATAAT+TGG | + | chr6_1:28139407-28139426 | None:intergenic | 35.0% | |
| CAATTATCCAAGATTGATGG+AGG | - | chr6_1:28139405-28139424 | Msa0881150:CDS | 35.0% | |
| ! | AAATAGAGGAGCACAAGAAA+AGG | + | chr6_1:28139500-28139519 | None:intergenic | 35.0% |
| TTTCTTGTGCTCCTCTATTT+AGG | - | chr6_1:28139500-28139519 | Msa0881150:intron | 35.0% | |
| TTCTTGTGCTCCTCTATTTA+GGG | - | chr6_1:28139501-28139520 | Msa0881150:intron | 35.0% | |
| CATTTCAAGAGTTAATGGTG+TGG | - | chr6_1:28139648-28139667 | Msa0881150:CDS | 35.0% | |
| ATGGTGTGGAATTGTGTAAA+TGG | - | chr6_1:28139662-28139681 | Msa0881150:CDS | 35.0% | |
| ! | GTAAATGGATTTAACCTTGG+CGG | - | chr6_1:28139677-28139696 | Msa0881150:exon | 35.0% |
| ! | ACGTTGTTTGGTGAGAGAAA+TGG | - | chr6_1:28136005-28136024 | Msa0881150:three_prime_UTR | 40.0% |
| ATCTAAAAGCTCACCGTCTT+GGG | + | chr6_1:28136403-28136422 | None:intergenic | 40.0% | |
| !!! | GGTGGTTTTGATATGACTAC+TGG | - | chr6_1:28136423-28136442 | Msa0881150:CDS | 40.0% |
| !! | GGTTTTGATATGACTACTGG+TGG | - | chr6_1:28136426-28136445 | Msa0881150:intron | 40.0% |
| TGGTAGTTTATCTGTGCCAA+TGG | - | chr6_1:28136789-28136808 | Msa0881150:intron | 40.0% | |
| ! | CTTCTGTAGTTTTTCTGTCG+GGG | - | chr6_1:28136826-28136845 | Msa0881150:intron | 40.0% |
| ATATTGTAGGCTGTAGCCTA+TGG | - | chr6_1:28136991-28137010 | Msa0881150:intron | 40.0% | |
| ! | TAGCCTATGGAATTTTCTCC+CGG | - | chr6_1:28137004-28137023 | Msa0881150:intron | 40.0% |
| !!! | AAAAGTTTTAGGCTCATCCC+GGG | + | chr6_1:28137025-28137044 | None:intergenic | 40.0% |
| TCATAGTCAGATAATCCCGT+AGG | - | chr6_1:28137045-28137064 | Msa0881150:intron | 40.0% | |
| TGCTAATAGAGCCAACCATA+AGG | + | chr6_1:28137304-28137323 | None:intergenic | 40.0% | |
| GCTCTATTAGCACAAAACTG+TGG | - | chr6_1:28137312-28137331 | Msa0881150:intron | 40.0% | |
| CCCTAGATAACTCCTCTTTA+CGG | + | chr6_1:28137501-28137520 | None:intergenic | 40.0% | |
| CCGTAAAGAGGAGTTATCTA+GGG | - | chr6_1:28137498-28137517 | Msa0881150:intron | 40.0% | |
| ! | TATCTAGGGCTCTGGTAAAA+AGG | - | chr6_1:28137512-28137531 | Msa0881150:intron | 40.0% |
| GTGGAAGAAATAGAGGACTT+TGG | - | chr6_1:28137544-28137563 | Msa0881150:intron | 40.0% | |
| ATAGAGGAATTTGAGAGGTG+AGG | - | chr6_1:28137593-28137612 | Msa0881150:intron | 40.0% | |
| TAGAGGAATTTGAGAGGTGA+GGG | - | chr6_1:28137594-28137613 | Msa0881150:intron | 40.0% | |
| TTGAGTTCCCCCAAATGAAA+AGG | + | chr6_1:28137655-28137674 | None:intergenic | 40.0% | |
| !!! | GGATTTTTTAGGGTTTTGGG+GGG | - | chr6_1:28137691-28137710 | Msa0881150:intron | 40.0% |
| !! | ATAGGCTTTGTTTGGGAGTT+TGG | + | chr6_1:28137889-28137908 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAT+AGG | - | chr6_1:28137889-28137908 | Msa0881150:intron | 40.0% | |
| GCAACAAACTTGAAGGAAAG+GGG | - | chr6_1:28137981-28138000 | Msa0881150:intron | 40.0% | |
| AAACTTGAAGGAAAGGGGAT+TGG | - | chr6_1:28137986-28138005 | Msa0881150:intron | 40.0% | |
| !! | ATAGGCTTTGTTTGGGAGTT+TGG | + | chr6_1:28137889-28137908 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAT+AGG | - | chr6_1:28137889-28137908 | Msa0881150:intron | 40.0% | |
| GCAACAAACTTGAAGGAAAG+GGG | - | chr6_1:28137981-28138000 | Msa0881150:intron | 40.0% | |
| AAACTTGAAGGAAAGGGGAT+TGG | - | chr6_1:28137986-28138005 | Msa0881150:intron | 40.0% | |
| !! | ATAGGCTTTGTTTGGGAGTT+TGG | + | chr6_1:28137889-28137908 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAT+AGG | - | chr6_1:28137889-28137908 | Msa0881150:intron | 40.0% | |
| GCAACAAACTTGAAGGAAAG+GGG | - | chr6_1:28137981-28138000 | Msa0881150:intron | 40.0% | |
| AAACTTGAAGGAAAGGGGAT+TGG | - | chr6_1:28137986-28138005 | Msa0881150:intron | 40.0% | |
| CCCAGTGACTAATCTCAAAA+TGG | - | chr6_1:28138871-28138890 | Msa0881150:intron | 40.0% | |
| !!! | GCCATTTTGAGATTAGTCAC+TGG | + | chr6_1:28138065-28138084 | None:intergenic | 40.0% |
| TCTGTACAATCAACTGTGGT+TGG | - | chr6_1:28138937-28138956 | Msa0881150:intron | 40.0% | |
| CTGTACAATCAACTGTGGTT+GGG | - | chr6_1:28138938-28138957 | Msa0881150:intron | 40.0% | |
| ! | TTTGGAGCATACCAATCCTT+TGG | - | chr6_1:28139133-28139152 | Msa0881150:intron | 40.0% |
| ATGAAAAGACCCGCAAGAAA+AGG | - | chr6_1:28139289-28139308 | Msa0881150:CDS | 40.0% | |
| TGAAAAGACCCGCAAGAAAA+GGG | - | chr6_1:28139290-28139309 | Msa0881150:CDS | 40.0% | |
| ! | CATCTTTTCCCTTTTCTTGC+GGG | + | chr6_1:28139301-28139320 | None:intergenic | 40.0% |
| ! | CCATCTTTTCCCTTTTCTTG+CGG | + | chr6_1:28139302-28139321 | None:intergenic | 40.0% |
| AAGGGAAAAGATGGAGAAGA+AGG | - | chr6_1:28139308-28139327 | Msa0881150:CDS | 40.0% | |
| TGTCTTGACAAACTTAGGTC+TGG | + | chr6_1:28139337-28139356 | None:intergenic | 40.0% | |
| GTTCGTGTCTTGACAAACTT+AGG | + | chr6_1:28139342-28139361 | None:intergenic | 40.0% | |
| ! | ACACGAACTAGATAGTTTGC+TGG | - | chr6_1:28139354-28139373 | Msa0881150:CDS | 40.0% |
| TTGGGTGATATTGTGCAACT+GGG | + | chr6_1:28139388-28139407 | None:intergenic | 40.0% | |
| ATTGGGTGATATTGTGCAAC+TGG | + | chr6_1:28139389-28139408 | None:intergenic | 40.0% | |
| GTAAAACCCTCCATCAATCT+TGG | + | chr6_1:28139415-28139434 | None:intergenic | 40.0% | |
| CTCTCACCAAACAACGTTAC+CGG | + | chr6_1:28136002-28136021 | None:intergenic | 45.0% | |
| GTGAGAGAAATGGCGAATCA+AGG | - | chr6_1:28136015-28136034 | Msa0881150:three_prime_UTR | 45.0% | |
| ! | TCAAGGTGCTAAGAAACGCA+AGG | - | chr6_1:28136032-28136051 | Msa0881150:three_prime_UTR | 45.0% |
| ! | AGAGAAAGAGAGTACGTTGC+AGG | + | chr6_1:28136103-28136122 | None:intergenic | 45.0% |
| ATGGATAGGAAACCCTAGCA+AGG | + | chr6_1:28136150-28136169 | None:intergenic | 45.0% | |
| !! | TCTTCCATTCTAGCTTCACC+TGG | - | chr6_1:28136292-28136311 | Msa0881150:three_prime_UTR | 45.0% |
| TTCACCTGGATGCATTGGAT+TGG | - | chr6_1:28136306-28136325 | Msa0881150:three_prime_UTR | 45.0% | |
| TCACCGTCTTGGGTATAACT+AGG | + | chr6_1:28136393-28136412 | None:intergenic | 45.0% | |
| CATCTAAAAGCTCACCGTCT+TGG | + | chr6_1:28136404-28136423 | None:intergenic | 45.0% | |
| ! | CAAGACGGTGAGCTTTTAGA+TGG | - | chr6_1:28136402-28136421 | Msa0881150:CDS | 45.0% |
| ATGACTACTGGTGGAGTTTG+CGG | - | chr6_1:28136435-28136454 | Msa0881150:intron | 45.0% | |
| ! | AGCCTATGGAATTTTCTCCC+GGG | - | chr6_1:28137005-28137024 | Msa0881150:intron | 45.0% |
| ATCCCGGGAGAAAATTCCAT+AGG | + | chr6_1:28137010-28137029 | None:intergenic | 45.0% | |
| TCAGATAATCCCGTAGGTCT+AGG | - | chr6_1:28137051-28137070 | Msa0881150:intron | 45.0% | |
| CAGATAATCCCGTAGGTCTA+GGG | - | chr6_1:28137052-28137071 | Msa0881150:intron | 45.0% | |
| !! | AAGAGTGTTCCCTAGACCTA+CGG | + | chr6_1:28137064-28137083 | None:intergenic | 45.0% |
| CCAGAACTTTCCAGAGATGA+TGG | + | chr6_1:28137240-28137259 | None:intergenic | 45.0% | |
| ! | CCATCATCTCTGGAAAGTTC+TGG | - | chr6_1:28137237-28137256 | Msa0881150:intron | 45.0% |
| GCCGTAAAGAGGAGTTATCT+AGG | - | chr6_1:28137497-28137516 | Msa0881150:intron | 45.0% | |
| ! | TAGGGCTCTGGTAAAAAGGA+AGG | - | chr6_1:28137516-28137535 | Msa0881150:intron | 45.0% |
| GGTAAAAAGGAAGGAGCAAG+TGG | - | chr6_1:28137525-28137544 | Msa0881150:intron | 45.0% | |
| GGAGCAAGTGGAAGAAATAG+AGG | - | chr6_1:28137537-28137556 | Msa0881150:intron | 45.0% | |
| ! | GAGGACTTTGGAAAAAGGGA+AGG | - | chr6_1:28137556-28137575 | Msa0881150:intron | 45.0% |
| GGAGCAAGTGGAAGAAATAG+AGG | - | chr6_1:28137537-28137556 | Msa0881150:intron | 45.0% | |
| TTTGGGGGGTGGGAAATATA+GGG | + | chr6_1:28137851-28137870 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr6_1:28137884-28137903 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr6_1:28137885-28137904 | None:intergenic | 45.0% |
| TTTGGGGGGTGGGAAATATA+GGG | + | chr6_1:28137851-28137870 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr6_1:28137884-28137903 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr6_1:28137885-28137904 | None:intergenic | 45.0% |
| TTTGGGGGGTGGGAAATATA+GGG | + | chr6_1:28137851-28137870 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr6_1:28137884-28137903 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr6_1:28137885-28137904 | None:intergenic | 45.0% |
| TGCAACATCCTTCACTGACA+CGG | - | chr6_1:28139076-28139095 | Msa0881150:intron | 45.0% | |
| GATTGGTATGCTCCAAATGC+TGG | + | chr6_1:28139130-28139149 | None:intergenic | 45.0% | |
| ! | GTTTTTGCCACAAGGTTCAG+AGG | - | chr6_1:28139168-28139187 | Msa0881150:intron | 45.0% |
| ! | CAGAGGTATGGTCAACATCT+TGG | - | chr6_1:28139185-28139204 | Msa0881150:intron | 45.0% |
| TTCACTTTCAGGCCACAGAA+AGG | - | chr6_1:28139214-28139233 | Msa0881150:intron | 45.0% | |
| CCGCAAGAAAAGGGAAAAGA+TGG | - | chr6_1:28139299-28139318 | Msa0881150:CDS | 45.0% | |
| !! | TTCTTGTAAGGACTAGCCTC+TGG | - | chr6_1:28139566-28139585 | Msa0881150:intron | 45.0% |
| !! | TCTTGTAAGGACTAGCCTCT+GGG | - | chr6_1:28139567-28139586 | Msa0881150:intron | 45.0% |
| TCATAGTCCAAGTATCCCAG+AGG | + | chr6_1:28139585-28139604 | None:intergenic | 45.0% | |
| TTGTGAGATTTACACCGCCA+AGG | + | chr6_1:28139694-28139713 | None:intergenic | 45.0% | |
| TCACCAAACAACGTTACCGG+TGG | + | chr6_1:28135999-28136018 | None:intergenic | 50.0% | |
| GCATCCAGGTGAAGCTAGAA+TGG | + | chr6_1:28136299-28136318 | None:intergenic | 50.0% | |
| CTAGCTTCACCTGGATGCAT+TGG | - | chr6_1:28136301-28136320 | Msa0881150:three_prime_UTR | 50.0% | |
| CAAGCCAATCCAATGCATCC+AGG | + | chr6_1:28136313-28136332 | None:intergenic | 50.0% | |
| !! | CTGGATGCATTGGATTGGCT+TGG | - | chr6_1:28136311-28136330 | Msa0881150:three_prime_UTR | 50.0% |
| ! | GACGGTGAGCTTTTAGATGG+TGG | - | chr6_1:28136405-28136424 | Msa0881150:CDS | 50.0% |
| TGACTACTGGTGGAGTTTGC+GGG | - | chr6_1:28136436-28136455 | Msa0881150:intron | 50.0% | |
| CTCTGCCTTGTCTTCTCTTC+TGG | - | chr6_1:28136464-28136483 | Msa0881150:intron | 50.0% | |
| ! | AGAGTGTTCCCTAGACCTAC+GGG | + | chr6_1:28137063-28137082 | None:intergenic | 50.0% |
| CAAGTCGCTTCCATCATCTC+TGG | - | chr6_1:28137227-28137246 | Msa0881150:intron | 50.0% | |
| ! | AGAGGAGTTATCTAGGGCTC+TGG | - | chr6_1:28137504-28137523 | Msa0881150:intron | 50.0% |
| GGAAAAAGGGAAGGAGCAAG+TGG | - | chr6_1:28137565-28137584 | Msa0881150:intron | 50.0% | |
| TTTGAGAGGTGAGGGCTTCA+CGG | - | chr6_1:28137602-28137621 | Msa0881150:intron | 50.0% | |
| ! | CTTTGGGGGGTGGGAAATAT+AGG | + | chr6_1:28137852-28137871 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr6_1:28137886-28137905 | None:intergenic | 50.0% |
| AGGGGATTGGATCGCTAAAC+AGG | - | chr6_1:28137999-28138018 | Msa0881150:intron | 50.0% | |
| GGATTGGATCGCTAAACAGG+AGG | - | chr6_1:28138002-28138021 | Msa0881150:intron | 50.0% | |
| TTGGATCGCTAAACAGGAGG+AGG | - | chr6_1:28138005-28138024 | Msa0881150:intron | 50.0% | |
| ! | CTTTGGGGGGTGGGAAATAT+AGG | + | chr6_1:28137852-28137871 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr6_1:28137886-28137905 | None:intergenic | 50.0% |
| AGGGGATTGGATCGCTAAAC+AGG | - | chr6_1:28137999-28138018 | Msa0881150:intron | 50.0% | |
| GGATTGGATCGCTAAACAGG+AGG | - | chr6_1:28138002-28138021 | Msa0881150:intron | 50.0% | |
| TTGGATCGCTAAACAGGAGG+AGG | - | chr6_1:28138005-28138024 | Msa0881150:intron | 50.0% | |
| ! | CTTTGGGGGGTGGGAAATAT+AGG | + | chr6_1:28137852-28137871 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr6_1:28137886-28137905 | None:intergenic | 50.0% |
| AGGGGATTGGATCGCTAAAC+AGG | - | chr6_1:28137999-28138018 | Msa0881150:intron | 50.0% | |
| GGATTGGATCGCTAAACAGG+AGG | - | chr6_1:28138002-28138021 | Msa0881150:intron | 50.0% | |
| TTGGATCGCTAAACAGGAGG+AGG | - | chr6_1:28138005-28138024 | Msa0881150:intron | 50.0% | |
| TGCCACAAGGTTCAGAGGTA+TGG | - | chr6_1:28139173-28139192 | Msa0881150:intron | 50.0% | |
| GACCATACCTCTGAACCTTG+TGG | + | chr6_1:28139178-28139197 | None:intergenic | 50.0% | |
| TCGCCACCGGTAACGTTGTT+TGG | - | chr6_1:28135993-28136012 | Msa0881150:three_prime_UTR | 55.0% | |
| ! | GATGATGATGTGGCGGAGCT+TGG | + | chr6_1:28136079-28136098 | None:intergenic | 55.0% |
| ! | TGCAGGCGATGATGATGTGG+CGG | + | chr6_1:28136086-28136105 | None:intergenic | 55.0% |
| ! | CGTTGCAGGCGATGATGATG+TGG | + | chr6_1:28136089-28136108 | None:intergenic | 55.0% |
| TTGAGAGGTGAGGGCTTCAC+GGG | - | chr6_1:28137603-28137622 | Msa0881150:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr6_1:28137881-28137900 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr6_1:28137881-28137900 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr6_1:28137881-28137900 | None:intergenic | 55.0% | |
| !! | GGACTAGCCTCTGGGATACT+TGG | - | chr6_1:28139575-28139594 | Msa0881150:intron | 55.0% |
| AGCAGCGACTTCATCGCCAC+CGG | - | chr6_1:28135980-28135999 | Msa0881150:three_prime_UTR | 60.0% | |
| TGAGAGGTGAGGGCTTCACG+GGG | - | chr6_1:28137604-28137623 | Msa0881150:intron | 60.0% | |
| GGAGTTTGGAGGGGAGGAGA+GGG | + | chr6_1:28137875-28137894 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGAGA+GGG | + | chr6_1:28137875-28137894 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGAGA+GGG | + | chr6_1:28137875-28137894 | None:intergenic | 60.0% | |
| GGGAGCAACCGTGTCAGTGA+AGG | + | chr6_1:28139087-28139106 | None:intergenic | 60.0% | |
| !! | AGGAGAGGGCTTTGGGGGGT+GGG | + | chr6_1:28137861-28137880 | None:intergenic | 65.0% |
| ! | AGGGGAGGAGAGGGCTTTGG+GGG | + | chr6_1:28137866-28137885 | None:intergenic | 65.0% |
| GAGGGGAGGAGAGGGCTTTG+GGG | + | chr6_1:28137867-28137886 | None:intergenic | 65.0% | |
| GGAGGGGAGGAGAGGGCTTT+GGG | + | chr6_1:28137868-28137887 | None:intergenic | 65.0% | |
| TGGAGGGGAGGAGAGGGCTT+TGG | + | chr6_1:28137869-28137888 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | + | chr6_1:28137876-28137895 | None:intergenic | 65.0% | |
| !! | AGGAGAGGGCTTTGGGGGGT+GGG | + | chr6_1:28137861-28137880 | None:intergenic | 65.0% |
| ! | AGGGGAGGAGAGGGCTTTGG+GGG | + | chr6_1:28137866-28137885 | None:intergenic | 65.0% |
| GAGGGGAGGAGAGGGCTTTG+GGG | + | chr6_1:28137867-28137886 | None:intergenic | 65.0% | |
| GGAGGGGAGGAGAGGGCTTT+GGG | + | chr6_1:28137868-28137887 | None:intergenic | 65.0% | |
| TGGAGGGGAGGAGAGGGCTT+TGG | + | chr6_1:28137869-28137888 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | + | chr6_1:28137876-28137895 | None:intergenic | 65.0% | |
| !! | AGGAGAGGGCTTTGGGGGGT+GGG | + | chr6_1:28137861-28137880 | None:intergenic | 65.0% |
| ! | AGGGGAGGAGAGGGCTTTGG+GGG | + | chr6_1:28137866-28137885 | None:intergenic | 65.0% |
| GAGGGGAGGAGAGGGCTTTG+GGG | + | chr6_1:28137867-28137886 | None:intergenic | 65.0% | |
| GGAGGGGAGGAGAGGGCTTT+GGG | + | chr6_1:28137868-28137887 | None:intergenic | 65.0% | |
| TGGAGGGGAGGAGAGGGCTT+TGG | + | chr6_1:28137869-28137888 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | + | chr6_1:28137876-28137895 | None:intergenic | 65.0% | |
| !! | GAGGAGAGGGCTTTGGGGGG+TGG | + | chr6_1:28137862-28137881 | None:intergenic | 70.0% |
| !! | GGGGAGGAGAGGGCTTTGGG+GGG | + | chr6_1:28137865-28137884 | None:intergenic | 70.0% |
| !! | GAGGAGAGGGCTTTGGGGGG+TGG | + | chr6_1:28137862-28137881 | None:intergenic | 70.0% |
| !! | GGGGAGGAGAGGGCTTTGGG+GGG | + | chr6_1:28137865-28137884 | None:intergenic | 70.0% |
| !! | GAGGAGAGGGCTTTGGGGGG+TGG | + | chr6_1:28137862-28137881 | None:intergenic | 70.0% |
| !! | GGGGAGGAGAGGGCTTTGGG+GGG | + | chr6_1:28137865-28137884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28135947 | 28139771 | 28135947 | ID=Msa0881150;Name=Msa0881150 |
| chr6_1 | mRNA | 28135947 | 28139771 | 28135947 | ID=Msa0881150-mRNA-1;Parent=Msa0881150;Name=Msa0881150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=77|1|1|1|1|1|5|403|173 |
| chr6_1 | exon | 28135947 | 28136442 | 28135947 | ID=Msa0881150-mRNA-1:exon:7058;Parent=Msa0881150-mRNA-1 |
| chr6_1 | exon | 28136529 | 28136594 | 28136529 | ID=Msa0881150-mRNA-1:exon:7057;Parent=Msa0881150-mRNA-1 |
| chr6_1 | exon | 28138444 | 28138528 | 28138444 | ID=Msa0881150-mRNA-1:exon:7056;Parent=Msa0881150-mRNA-1 |
| chr6_1 | exon | 28139261 | 28139454 | 28139261 | ID=Msa0881150-mRNA-1:exon:7055;Parent=Msa0881150-mRNA-1 |
| chr6_1 | exon | 28139611 | 28139771 | 28139611 | ID=Msa0881150-mRNA-1:exon:7054;Parent=Msa0881150-mRNA-1 |
| chr6_1 | five_prime_UTR | 28139695 | 28139771 | 28139695 | ID=Msa0881150-mRNA-1:five_prime_utr;Parent=Msa0881150-mRNA-1 |
| chr6_1 | CDS | 28139611 | 28139694 | 28139611 | ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1 |
| chr6_1 | CDS | 28139261 | 28139454 | 28139261 | ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1 |
| chr6_1 | CDS | 28138444 | 28138528 | 28138444 | ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1 |
| chr6_1 | CDS | 28136529 | 28136594 | 28136529 | ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1 |
| chr6_1 | CDS | 28136350 | 28136442 | 28136350 | ID=Msa0881150-mRNA-1:cds;Parent=Msa0881150-mRNA-1 |
| chr6_1 | three_prime_UTR | 28135947 | 28136349 | 28135947 | ID=Msa0881150-mRNA-1:three_prime_utr;Parent=Msa0881150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
