AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881610 MtrunA17_Chr8g0382131 88.981 1089 116 2 1 1089 1 1085 0.0 1978
Msa0881610 MtrunA17_Chr8g0382131 31.579 342 207 10 752 1083 982 1306 2.95e-36 149
Msa0881610 MtrunA17_Chr8g0382131 28.821 229 156 3 764 989 1096 1320 9.09e-19 92.8
Msa0881610 MtrunA17_Chr3g0079151 76.133 1081 257 1 3 1082 5 1085 0.0 1694
Msa0881610 MtrunA17_Chr3g0079151 30.267 337 203 13 769 1088 1000 1321 3.96e-29 126
Msa0881610 MtrunA17_Chr3g0079151 27.234 235 160 4 764 992 1103 1332 3.69e-17 87.4
Msa0881610 MtrunA17_Chr8g0338441 75.641 1092 261 4 1 1089 1 1090 0.0 1691
Msa0881610 MtrunA17_Chr8g0338441 28.963 328 212 10 769 1088 998 1312 1.60e-31 134
Msa0881610 MtrunA17_Chr8g0338441 27.966 236 150 5 764 992 1101 1323 2.45e-17 88.2
Msa0881610 MtrunA17_Chr8g0338311 74.658 1097 264 7 1 1089 4 1094 0.0 1641
Msa0881610 MtrunA17_Chr8g0338311 29.942 344 214 12 752 1088 990 1313 3.06e-34 143
Msa0881610 MtrunA17_Chr8g0338311 25.857 321 209 10 764 1077 1105 1403 1.92e-17 88.6
Msa0881610 MtrunA17_Chr8g0338331 70.281 1033 299 5 54 1083 13 1040 0.0 1455
Msa0881610 MtrunA17_Chr8g0338331 32.219 329 200 11 769 1088 954 1268 1.82e-34 144
Msa0881610 MtrunA17_Chr8g0338331 28.464 267 174 5 728 992 1028 1279 6.24e-20 96.7
Msa0881610 MtrunA17_Chr2g0311121 94.696 641 31 2 1 640 1 639 0.0 1246
Msa0881610 MtrunA17_Chr2g0311121 94.322 317 18 0 766 1082 648 964 0.0 617
Msa0881610 MtrunA17_Chr2g0311121 31.481 324 199 10 769 1083 879 1188 1.86e-33 140
Msa0881610 MtrunA17_Chr2g0311121 28.070 228 155 4 764 989 982 1202 3.90e-17 87.4
Msa0881610 MtrunA17_Chr6g0454611 65.844 770 205 9 330 1088 1 723 0.0 985
Msa0881610 MtrunA17_Chr6g0454611 29.388 245 141 7 764 992 506 734 1.30e-20 98.6
Msa0881610 MtrunA17_Chr8g0338301 85.795 528 74 1 49 575 1 528 0.0 930
Msa0881610 MtrunA17_Chr8g0338291 53.505 428 135 7 699 1087 1 403 4.85e-132 412
Msa0881610 MtrunA17_Chr8g0338291 29.365 378 209 12 759 1092 158 521 1.26e-35 143
Msa0881610 MtrunA17_Chr8g0338291 30.043 233 154 4 764 992 301 528 4.94e-20 95.5
Msa0881610 MtrunA17_Chr6g0454601 75.431 232 55 2 49 279 1 231 2.41e-107 335
Msa0881610 MtrunA17_Chr8g0378271 30.063 479 260 17 8 455 1144 1578 6.58e-42 168
Msa0881610 MtrunA17_Chr8g0338341 72.222 54 14 1 1 53 4 57 1.12e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881610 AT3G48770.1 55.760 1085 461 10 3 1081 195 1266 0.0 1213
Msa0881610 AT3G48770.1 32.515 326 195 11 767 1081 1179 1490 3.55e-34 143
Msa0881610 AT3G48770.1 28.390 236 143 9 764 988 1285 1505 1.48e-15 82.8
Msa0881610 AT3G48770.2 55.760 1085 461 10 3 1081 195 1266 0.0 1213
Msa0881610 AT3G48770.2 32.515 326 195 11 767 1081 1179 1490 3.55e-34 143
Msa0881610 AT3G48770.2 28.390 236 143 9 764 988 1285 1505 1.48e-15 82.8
Msa0881610 AT3G28020.1 41.111 270 96 7 155 423 36 243 5.46e-50 177
Msa0881610 AT4G13750.1 33.333 393 195 16 8 376 1162 1511 1.87e-36 151

Find 257 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGGTCTTCAATATTTA+AGG 0.080083 6_1:+28944295 Msa0881610:CDS
CAGCTGAAGGGAACTGTTTA+TGG 0.138932 6_1:+28946075 Msa0881610:CDS
ATGTGTTCCAACAGCCTTTA+TGG 0.144540 6_1:+28943809 Msa0881610:CDS
CATATGGACTCGATGTTATT+TGG 0.150304 6_1:-28942641 None:intergenic
CGGATTCAAGAGTGTGTTTC+TGG 0.154146 6_1:+28943095 Msa0881610:CDS
TTTAAAATCACCCTCATATT+TGG 0.157957 6_1:+28945681 Msa0881610:CDS
TTTATTGATCAATCTTATTT+TGG 0.169239 6_1:+28945571 Msa0881610:CDS
CATATATCTCCTCCAAATTC+TGG 0.199713 6_1:+28944980 Msa0881610:CDS
CCTGTCAAACAGCAGCTTTC+AGG 0.209567 6_1:+28943321 Msa0881610:CDS
GCCCATTTGCTCACATTTGC+AGG 0.230967 6_1:-28944806 None:intergenic
GGCTTCTCCTCAACCCATTC+AGG 0.234048 6_1:-28943207 None:intergenic
ATTCCATCAAAGTTTGTTTC+TGG 0.234300 6_1:-28944553 None:intergenic
AAATAAGATTGATCAATAAA+AGG 0.238207 6_1:-28945568 None:intergenic
CTGATTGATGAGAGCTTCTA+TGG 0.243280 6_1:+28945238 Msa0881610:CDS
TTTCCTGATGGAACTGATTC+AGG 0.243380 6_1:+28941270 Msa0881610:CDS
TTAAATGCTTGATAACAATT+TGG 0.253106 6_1:-28945663 None:intergenic
ATGCCACTTGTTGACAACTA+TGG 0.253963 6_1:+28944749 Msa0881610:CDS
TCTTATGCAGGCCAATTTAC+AGG 0.257247 6_1:+28944902 Msa0881610:CDS
ACGGCTGAAAACCCAGAATT+TGG 0.261747 6_1:-28944992 None:intergenic
CAATTCTCTTGGATAATAAA+TGG 0.271572 6_1:+28943769 Msa0881610:CDS
GTAAGAAACAAAAGAACTTC+TGG 0.271766 6_1:-28943351 None:intergenic
GCAGGCCAATTTACAGGTTC+CGG 0.271998 6_1:+28944908 Msa0881610:CDS
GTCAGTCTAATGCTTGTTCT+TGG 0.275029 6_1:+28944444 Msa0881610:CDS
GTCAAAATATTCCAGAATTC+AGG 0.286034 6_1:-28944050 None:intergenic
CTGCATAAGATGAGGAATTT+AGG 0.289962 6_1:-28944889 None:intergenic
GTAGGCTGCTGCCTGAATTC+TGG 0.298736 6_1:+28944039 Msa0881610:CDS
CTTGTTCTTGGTTGATCAAT+TGG 0.308181 6_1:+28944456 Msa0881610:CDS
GCTTCCCGGAACCTGTAAAT+TGG 0.312199 6_1:-28944913 None:intergenic
GTGATTGATCATAAATTCTA+TGG 0.318339 6_1:+28945895 Msa0881610:CDS
TAAAGACATCTTTGGGTCTA+AGG 0.327673 6_1:+28945482 Msa0881610:CDS
ACACAGTGAAGACTCCTTCT+TGG 0.331410 6_1:-28941037 None:intergenic
AGCCCAGAAACAAACTTTGA+TGG 0.338778 6_1:+28944550 Msa0881610:CDS
ATCTCTTCAACGTGTTCTTT+TGG 0.340965 6_1:-28941142 None:intergenic
CATGTGGAAGCAAAAGTTTC+CGG 0.342746 6_1:+28943554 Msa0881610:CDS
AACTGGTCTTCAATATTTAA+GGG 0.345449 6_1:+28944296 Msa0881610:CDS
CACTCCTTCGCCCCGGGCTT+CGG 0.349965 6_1:-28944072 None:intergenic
CTTGAACATGCGAACCAAAC+TGG 0.352271 6_1:-28943877 None:intergenic
CCTTGTCCACATTGCAGTCT+TGG 0.356946 6_1:+28943174 Msa0881610:CDS
CATAGAAGCTCTCATCAATC+AGG 0.360873 6_1:-28945237 None:intergenic
CTCAAATGGAGAACTTTCAA+TGG 0.364795 6_1:-28943907 None:intergenic
TTCCATCAAAGTTTGTTTCT+GGG 0.366156 6_1:-28944552 None:intergenic
CTGTGAAGTCTCTCCTGATT+TGG 0.367418 6_1:-28943642 None:intergenic
TTGACAGGGTTGACCTTATC+CGG 0.368387 6_1:-28943306 None:intergenic
TTCTTAATTCGATCGCCATT+GGG 0.373994 6_1:+28945175 Msa0881610:CDS
ACTTGATTGTTTCTAATCCT+TGG 0.377953 6_1:+28944831 Msa0881610:CDS
AATCCAATCCAAAAGCAAAA+AGG 0.378620 6_1:-28945041 None:intergenic
GAGGAAATTAATAAGCTTCC+CGG 0.383098 6_1:-28944927 None:intergenic
GTTGACATAAAGCAGATATA+TGG 0.387873 6_1:+28943237 Msa0881610:CDS
ATTTCCTCACAACTCATGTT+GGG 0.388747 6_1:+28944942 Msa0881610:CDS
GAAGAACAAATGTGGAAGAA+TGG 0.395904 6_1:+28943601 Msa0881610:CDS
AGATCCTCCGTCAAAGGATT+AGG 0.396867 6_1:-28941196 None:intergenic
CCTGAAAGCTGCTGTTTGAC+AGG 0.398809 6_1:-28943321 None:intergenic
ACCTTGGCTAAAGACATCTT+TGG 0.400370 6_1:+28945474 Msa0881610:CDS
CAGGCCAATTTACAGGTTCC+GGG 0.401530 6_1:+28944909 Msa0881610:CDS
GGCAAGACAATTGTTGTAGT+TGG 0.402161 6_1:-28943276 None:intergenic
GAGGAAGCATGCAGTTTCAT+TGG 0.409025 6_1:+28945319 Msa0881610:CDS
GCATTCAAAACACTTGTTGT+AGG 0.419093 6_1:+28943834 Msa0881610:CDS
GTTCTTAATTCGATCGCCAT+TGG 0.419488 6_1:+28945174 Msa0881610:CDS
GTTGACCTTATCCGGCTTCA+AGG 0.419729 6_1:-28943298 None:intergenic
ACCATTCTCTTCTTCCCTCC+TGG 0.421434 6_1:+28941084 Msa0881610:five_prime_UTR
AATTTGCATGTGCAGGAAAC+CGG 0.424026 6_1:+28944486 Msa0881610:CDS
ACTGCATGCTTCCTCACAAC+TGG 0.429103 6_1:-28945311 None:intergenic
ATATATCTCCTCCAAATTCT+GGG 0.429424 6_1:+28944981 Msa0881610:CDS
TAGTGTAGTCTTAAGTTCAT+TGG 0.429988 6_1:+28945765 Msa0881610:CDS
TGATCGTCCAACACCGCATA+TGG 0.432526 6_1:-28942657 None:intergenic
AAGAACAAATGTGGAAGAAT+GGG 0.434079 6_1:+28943602 Msa0881610:CDS
CGAAGAGGAGCTGAAGTTGT+TGG 0.435700 6_1:+28945612 Msa0881610:CDS
ATGCGAACCAAACTGGATAC+TGG 0.436241 6_1:-28943870 None:intergenic
GACACTGGCCTTGCCAAATC+AGG 0.437589 6_1:+28943629 Msa0881610:CDS
CTTAACCTATCTTCTCATGA+TGG 0.437612 6_1:+28944101 Msa0881610:CDS
TTGGATATATAGTTCCTGAA+TGG 0.438129 6_1:+28943193 Msa0881610:CDS
CTTGCCCTTGAAGCCGGATA+AGG 0.438602 6_1:+28943293 Msa0881610:CDS
CCTTGGCTAAAGACATCTTT+GGG 0.438824 6_1:+28945475 Msa0881610:CDS
AATAAGATTGATCAATAAAA+GGG 0.440080 6_1:-28945567 None:intergenic
TGCTTTATGTCAACAAGGGT+TGG 0.441323 6_1:-28943228 None:intergenic
GGATCAGTATTGCATGATTC+CGG 0.441769 6_1:+28945514 Msa0881610:CDS
ACGTAATTAAACTTCTCAAA+TGG 0.442198 6_1:-28943921 None:intergenic
CGAATTAAGAACGACTTTGA+AGG 0.445788 6_1:-28945163 None:intergenic
TGCTCTGTGTACGTCTCAAT+AGG 0.449548 6_1:-28943987 None:intergenic
TGCCTGCAAATGTGAGCAAA+TGG 0.454255 6_1:+28944804 Msa0881610:CDS
ATAAAATATGTCGCTTCTGA+TGG 0.456395 6_1:+28944344 Msa0881610:CDS
TTAAATCAGTGAATGTTGAT+TGG 0.456529 6_1:+28944189 Msa0881610:CDS
AACAAGGAATTTGCATGTGC+AGG 0.458682 6_1:+28944479 Msa0881610:CDS
CACAGGGGTAAAAGCTCACC+AGG 0.460066 6_1:+28943660 Msa0881610:CDS
TCAAGCTCCAGTATCCAGTT+TGG 0.461781 6_1:+28943863 Msa0881610:CDS
TGGCTTAAAGTTACCGTCAA+TGG 0.462762 6_1:+28945130 Msa0881610:CDS
TGTCAAAGAGGCCAAATATG+AGG 0.465725 6_1:-28945692 None:intergenic
TCAAATGGAGAACTTTCAAT+GGG 0.465796 6_1:-28943906 None:intergenic
TTCTTGTTGCAGACAGCTGA+AGG 0.466613 6_1:+28946062 Msa0881610:intron
TTAGCAATGGATATCAGATA+AGG 0.469431 6_1:+28943139 Msa0881610:CDS
AGAGAAGTTAATGAAAATCC+TGG 0.475479 6_1:+28943396 Msa0881610:CDS
TGGATATATAGTTCCTGAAT+GGG 0.476182 6_1:+28943194 Msa0881610:CDS
TGATGAGGCAAGGACAAAAT+CGG 0.477015 6_1:-28943739 None:intergenic
ATAAGCCTGGTGAAGTTAGT+AGG 0.479139 6_1:+28944021 Msa0881610:CDS
TATGCCTGAAAGCACACAAA+AGG 0.479928 6_1:+28944514 Msa0881610:CDS
GAAGAGGAGCTGAAGTTGTT+GGG 0.481226 6_1:+28945613 Msa0881610:CDS
AGAAACAAACTTTGATGGAA+TGG 0.483256 6_1:+28944555 Msa0881610:CDS
TGTTCACAAATTTATCCAAC+GGG 0.484050 6_1:-28945438 None:intergenic
ATCAAGGGAGACAATTCTCT+TGG 0.486296 6_1:+28943758 Msa0881610:CDS
TCCTCCCATCATGAGAAGAT+AGG 0.486346 6_1:-28944106 None:intergenic
AAGTTACCGTCAATGGATAC+AGG 0.486746 6_1:+28945137 Msa0881610:CDS
CTCGGCGGAAAGATTCTTAA+CGG 0.487241 6_1:-28941227 None:intergenic
CTGAGATGCGACTTGCCATC+CGG 0.489733 6_1:-28945533 None:intergenic
AATTGTCTTGCCCTTGAAGC+CGG 0.490156 6_1:+28943287 Msa0881610:CDS
TTAACTTCATCCAATATCTC+AGG 0.492450 6_1:+28945404 Msa0881610:CDS
CATTAACTTCTCTTACAGAA+AGG 0.494102 6_1:-28943386 None:intergenic
AATTTCCTCACAACTCATGT+TGG 0.495542 6_1:+28944941 Msa0881610:CDS
TTACAGTTACAGAAGATCAA+TGG 0.504227 6_1:+28941114 Msa0881610:exon
TCTGATGACATTACTGCTAC+TGG 0.509465 6_1:+28942572 Msa0881610:CDS
TGGGAATCCTAATCCTTTGA+CGG 0.509622 6_1:+28941189 Msa0881610:CDS
TGCCACTTGTTGACAACTAT+GGG 0.510885 6_1:+28944750 Msa0881610:CDS
AGTGGTTACATAGGAGAGAA+AGG 0.513870 6_1:+28942701 Msa0881610:CDS
GCAGTTACAGTGCTCTGTCC+AGG 0.514375 6_1:-28943414 None:intergenic
ACTGGATACTGGAGCTTGAT+CGG 0.515987 6_1:-28943859 None:intergenic
GAACACATTCAAGTATCCCT+TGG 0.516265 6_1:-28943794 None:intergenic
CTAAATTCCTCATCTTATGC+AGG 0.516492 6_1:+28944890 Msa0881610:CDS
CATCCACAAGATTAGAACTC+TGG 0.519704 6_1:-28944226 None:intergenic
TTGACCGAAGCCCGGGGCGA+AGG 0.521857 6_1:+28944068 Msa0881610:CDS
CAGAAGCACTTCTATAAGCC+TGG 0.523495 6_1:+28944008 Msa0881610:CDS
TTTCTTGTATGACCAGGTGT+GGG 0.524503 6_1:+28945840 Msa0881610:CDS
TTTGGGTCTAAGGTCTCCTG+TGG 0.524841 6_1:+28945492 Msa0881610:CDS
TTAACCTATCTTCTCATGAT+GGG 0.525256 6_1:+28944102 Msa0881610:CDS
GGATTCGGAATCTGAAGCAC+AGG 0.525316 6_1:+28945059 Msa0881610:CDS
TGTAGTCTTAAGTTCATTGG+AGG 0.525391 6_1:+28945768 Msa0881610:CDS
AATGCATCCATAAAGGCTGT+TGG 0.526580 6_1:-28943816 None:intergenic
CATCCAGAGTTCTAATCTTG+TGG 0.527876 6_1:+28944223 Msa0881610:CDS
TTGAAAATAAGTAATGTGGC+TGG 0.527999 6_1:-28942599 None:intergenic
GGAAGAATGGGTTGTGACAC+TGG 0.528035 6_1:+28943614 Msa0881610:CDS
ATTACGTTACTTCTCCAAGA+AGG 0.528583 6_1:+28941023 Msa0881610:five_prime_UTR
GTACCTGAATCAGTTCCATC+AGG 0.531003 6_1:-28941273 None:intergenic
ATTATTGAAAATAAGTAATG+TGG 0.531522 6_1:-28942603 None:intergenic
GATCAACAAAGAAAGGCAAC+AGG 0.532763 6_1:+28942675 Msa0881610:CDS
CAAGTACACTCCTTCGCCCC+GGG 0.533450 6_1:-28944078 None:intergenic
AATGTATAAAAGATGGCAGC+TGG 0.535839 6_1:+28945110 Msa0881610:CDS
GGAAGCAAAAGTTTCCGGTC+AGG 0.537304 6_1:+28943559 Msa0881610:CDS
ATCGAGTCCATATGCGGTGT+TGG 0.538601 6_1:+28942650 Msa0881610:CDS
TTTGGCCTCTTTGACAGCTG+AGG 0.538870 6_1:+28945699 Msa0881610:CDS
TGCATTTCTTCCTACAGAGA+TGG 0.539549 6_1:+28943689 Msa0881610:CDS
AAGTTGTTGGGAGTGATAGT+TGG 0.545022 6_1:+28945625 Msa0881610:CDS
ACCACACTTTCTGACCTGAC+CGG 0.545588 6_1:-28943573 None:intergenic
AATGAAAATTATGTTGAGCT+CGG 0.545690 6_1:+28944857 Msa0881610:CDS
CCAAGACTGCAATGTGGACA+AGG 0.545693 6_1:-28943174 None:intergenic
TTTGGTAAGTGGTGTATCAA+CGG 0.546178 6_1:-28945011 None:intergenic
AGGAGGCCTGTATCCATTGA+CGG 0.546253 6_1:-28945143 None:intergenic
CAGAGTTCTAATCTTGTGGA+TGG 0.546719 6_1:+28944227 Msa0881610:CDS
GAAGAAGAGTTGAAAACTGT+AGG 0.547445 6_1:+28945280 Msa0881610:CDS
TTGACCTTATCCGGCTTCAA+GGG 0.547830 6_1:-28943297 None:intergenic
TGATTGATGAGAGCTTCTAT+GGG 0.548178 6_1:+28945239 Msa0881610:CDS
CGTGTCACAGAAACAAGAAA+AGG 0.548446 6_1:+28944773 Msa0881610:CDS
GTTTCACTCCCTCGTTGTAG+TGG 0.549208 6_1:-28942526 None:intergenic
CAGGAAAAGTCTTCTCCCGT+TGG 0.550382 6_1:+28945423 Msa0881610:CDS
CGCCCATAGTTGTCAACAAG+TGG 0.551293 6_1:-28944752 None:intergenic
GCAAGTACACTCCTTCGCCC+CGG 0.552305 6_1:-28944079 None:intergenic
GAATGCACACAGCACTATGC+AGG 0.553612 6_1:+28944392 Msa0881610:CDS
GTTATGACAAACTCCAGTGT+TGG 0.555568 6_1:-28942548 None:intergenic
CTGAAAGCTGCTGTTTGACA+GGG 0.558377 6_1:-28943320 None:intergenic
TATAGTTCCTGAATGGGTTG+AGG 0.559108 6_1:+28943200 Msa0881610:CDS
TTTCCTCACAACTCATGTTG+GGG 0.560061 6_1:+28944943 Msa0881610:CDS
ATGATCTTTACTTAGAGTGA+AGG 0.560606 6_1:-28945368 None:intergenic
GGAAAATAGTAACAATGAGA+AGG 0.560900 6_1:+28943518 Msa0881610:CDS
TGGATAATAAATGGAACCAA+GGG 0.561153 6_1:+28943778 Msa0881610:CDS
AACAGAACTGCAGACGACAT+TGG 0.561429 6_1:-28944624 None:intergenic
AATGAAGTATTTGTCAGAGC+GGG 0.562386 6_1:+28944703 Msa0881610:CDS
GGAGTGATAGTTGGCACAAG+TGG 0.564698 6_1:+28945634 Msa0881610:CDS
AACAGGAGTAGTGGTTACAT+AGG 0.565589 6_1:+28942692 Msa0881610:CDS
TTGAGAAGTTTAATTACGTG+AGG 0.567041 6_1:+28943925 Msa0881610:CDS
ATGGAGAACTTTCAATGGGA+AGG 0.567857 6_1:-28943902 None:intergenic
CTGTTCACAAATTTATCCAA+CGG 0.568497 6_1:-28945439 None:intergenic
GTTTCTTGTATGACCAGGTG+TGG 0.570066 6_1:+28945839 Msa0881610:CDS
CCCAAAGATGTCTTTAGCCA+AGG 0.571618 6_1:-28945475 None:intergenic
GCATTCATGAAAACTGAAAG+AGG 0.572108 6_1:-28944375 None:intergenic
AAGAAAGGCAACAGGAGTAG+TGG 0.572646 6_1:+28942683 Msa0881610:CDS
GAATTTGGAGGAGATATATG+AGG 0.573317 6_1:-28944977 None:intergenic
GTTGGACGATCAACAAAGAA+AGG 0.574748 6_1:+28942668 Msa0881610:CDS
TTGGATAATAAATGGAACCA+AGG 0.576105 6_1:+28943777 Msa0881610:CDS
CGAAGGACAAAGTTCTCTAT+CGG 0.576706 6_1:+28941166 Msa0881610:CDS
GATGATATGCATCAGATCCA+TGG 0.576735 6_1:+28945735 Msa0881610:CDS
AAATCGGCTTGAATAATGAA+AGG 0.577485 6_1:-28943723 None:intergenic
TGGTGAAGATCCTCCGTCAA+AGG 0.577978 6_1:-28941202 None:intergenic
AAAAGATGTTCATTTCCTGA+TGG 0.578740 6_1:+28941258 Msa0881610:CDS
AGGACAAAGTTCTCTATCGG+TGG 0.579395 6_1:+28941169 Msa0881610:CDS
ATAGAAGCTCTCATCAATCA+GGG 0.580805 6_1:-28945236 None:intergenic
TCCGGTCAGGTCAGAAAGTG+TGG 0.580886 6_1:+28943572 Msa0881610:CDS
AAATTAGTGACCATCTCTGT+AGG 0.582428 6_1:-28943699 None:intergenic
GCCTGCAAATGTGAGCAAAT+GGG 0.582565 6_1:+28944805 Msa0881610:CDS
GCTGAAAACCCAGAATTTGG+AGG 0.583530 6_1:-28944989 None:intergenic
AATGAACTTAAGACTACACT+AGG 0.584914 6_1:-28945763 None:intergenic
CAAATCAGGAGAGACTTCAC+AGG 0.585657 6_1:+28943643 Msa0881610:CDS
ACCAGGAGGGAAGAAGAGAA+TGG 0.586766 6_1:-28941085 None:intergenic
GCGAGATTAACTTCGTGCAA+AGG 0.587053 6_1:+28943451 Msa0881610:CDS
GTCAAAGAGGCCAAATATGA+GGG 0.587936 6_1:-28945691 None:intergenic
AATACTTCATTGACAAAGAG+TGG 0.590330 6_1:-28944691 None:intergenic
TCTTGTTGCAGACAGCTGAA+GGG 0.591504 6_1:+28946063 Msa0881610:intron
GACTACACTAGGGTCATCCA+TGG 0.591867 6_1:-28945752 None:intergenic
TTGTCTCCCTTGATGAGGCA+AGG 0.592393 6_1:-28943749 None:intergenic
TTGGTTGATCAATTGGAACA+AGG 0.592428 6_1:+28944463 Msa0881610:CDS
TAGAATTTATGATCAATCAC+AGG 0.594080 6_1:-28945892 None:intergenic
CGGAAAGATTCTTAACGGCA+TGG 0.595639 6_1:-28941222 None:intergenic
CTTTGCAAAATATTTCCCAA+TGG 0.595878 6_1:-28945190 None:intergenic
ATTTATGATCAATCACAGGC+AGG 0.597481 6_1:-28945888 None:intergenic
AAGTCTCTCCTGATTTGGCA+AGG 0.599451 6_1:-28943637 None:intergenic
GAAGTATTTGTCAGAGCGGG+AGG 0.599581 6_1:+28944706 Msa0881610:CDS
AACAGCCTCAGCTGTCAAAG+AGG 0.599829 6_1:-28945704 None:intergenic
GGAAGAAATGCATAGACCCC+TGG 0.601342 6_1:-28943678 None:intergenic
TGAGAAGTTTAATTACGTGA+GGG 0.601922 6_1:+28943926 Msa0881610:CDS
TAGAAGCTCTCATCAATCAG+GGG 0.602012 6_1:-28945235 None:intergenic
TTTGTTTCTGGGCTAAACGT+AGG 0.602269 6_1:-28944541 None:intergenic
GTAGTCTTAAGTTCATTGGA+GGG 0.605013 6_1:+28945769 Msa0881610:CDS
TTTGTGAACAGCATCAGAGA+TGG 0.606034 6_1:+28945451 Msa0881610:CDS
GGACAAAGTTCTCTATCGGT+GGG 0.608517 6_1:+28941170 Msa0881610:CDS
AGCTGCTTGAAGACAAACAT+GGG 0.609366 6_1:+28945796 Msa0881610:CDS
AGGAATGCAGCTACTACATG+TGG 0.611117 6_1:+28943538 Msa0881610:CDS
AGCAGCCTACTAACTTCACC+AGG 0.611524 6_1:-28944026 None:intergenic
ATATCTGCTTTATGTCAACA+AGG 0.613422 6_1:-28943233 None:intergenic
ACCTATCTTCTCATGATGGG+AGG 0.616829 6_1:+28944105 Msa0881610:CDS
TCATGCAATACTGATCCCAC+AGG 0.622007 6_1:-28945508 None:intergenic
ATTAAGAACGACTTTGAAGG+AGG 0.622476 6_1:-28945160 None:intergenic
ATAAAGCAGATATATGGTGC+TGG 0.623832 6_1:+28943243 Msa0881610:CDS
ACAGCATCAGAGATGGACCT+TGG 0.626179 6_1:+28945458 Msa0881610:CDS
TTGGGTCTAAGGTCTCCTGT+GGG 0.627221 6_1:+28945493 Msa0881610:CDS
CAGTATTGCATGATTCCGGA+TGG 0.631365 6_1:+28945518 Msa0881610:CDS
TGTAACTGTAATGAAGTACC+AGG 0.632648 6_1:-28941102 None:intergenic
TTCTTGTATGACCAGGTGTG+GGG 0.634092 6_1:+28945841 Msa0881610:CDS
GAAGATAACCACTACAACGA+GGG 0.636772 6_1:+28942518 Msa0881610:CDS
GAGAATTGTCTCCCTTGATG+AGG 0.640110 6_1:-28943754 None:intergenic
GATTCGGAATCTGAAGCACA+GGG 0.645968 6_1:+28945060 Msa0881610:CDS
AAATTATGTTGAGCTCGGAA+AGG 0.647507 6_1:+28944862 Msa0881610:CDS
AACACGTTGAAGAGATACGA+AGG 0.650029 6_1:+28941149 Msa0881610:CDS
AAGCTGCTTGAAGACAAACA+TGG 0.651201 6_1:+28945795 Msa0881610:CDS
TCATACAAGAAACATTCACT+TGG 0.652808 6_1:-28945829 None:intergenic
CGAGGGAGTGAAACCAACAC+TGG 0.653447 6_1:+28942535 Msa0881610:CDS
GAATCCTAATCCTTTGACGG+AGG 0.657473 6_1:+28941192 Msa0881610:CDS
TATCTGCTTTATGTCAACAA+GGG 0.658452 6_1:-28943232 None:intergenic
AGAAGCTCTCATCAATCAGG+GGG 0.669488 6_1:-28945234 None:intergenic
TGAATGTTTCTTGTATGACC+AGG 0.671735 6_1:+28945834 Msa0881610:CDS
AAATTGGCCTGCATAAGATG+AGG 0.673901 6_1:-28944897 None:intergenic
AAGCCCCAACATGAGTTGTG+AGG 0.674441 6_1:-28944946 None:intergenic
AAATCAGGAGAGACTTCACA+GGG 0.675521 6_1:+28943644 Msa0881610:CDS
GGAAATATATGACTACGAAG+AGG 0.681277 6_1:+28945597 Msa0881610:CDS
ACTGTAATGAAGTACCAGGA+GGG 0.681330 6_1:-28941098 None:intergenic
GGTTGAAAGAAGAACAAATG+TGG 0.682339 6_1:+28943593 Msa0881610:CDS
AATAACATCGAGTCCATATG+CGG 0.692614 6_1:+28942644 Msa0881610:CDS
CAATGAAGTATTTGTCAGAG+CGG 0.694666 6_1:+28944702 Msa0881610:CDS
AACTGTAATGAAGTACCAGG+AGG 0.699007 6_1:-28941099 None:intergenic
CAGGGGTAAAAGCTCACCAG+GGG 0.701442 6_1:+28943662 Msa0881610:CDS
ATGAACTTAAGACTACACTA+GGG 0.702168 6_1:-28945762 None:intergenic
AGGAGTGATGTCCAGTTGTG+AGG 0.703015 6_1:+28945300 Msa0881610:CDS
GATTGATGAGAGCTTCTATG+GGG 0.706208 6_1:+28945240 Msa0881610:CDS
GGGGAGTGCACCTACCAGAG+AGG 0.710502 6_1:+28945080 Msa0881610:CDS
ACTGAAGCAAATCGGTGTGG+TGG 0.715774 6_1:+28945945 Msa0881610:CDS
ACAGGGGTAAAAGCTCACCA+GGG 0.723015 6_1:+28943661 Msa0881610:CDS
CACACTATATCTCTCCGCAG+AGG 0.734382 6_1:+28943497 Msa0881610:CDS
ATATATCCAAGACTGCAATG+TGG 0.750302 6_1:-28943180 None:intergenic
TGAAGATAACCACTACAACG+AGG 0.755604 6_1:+28942517 Msa0881610:CDS
TGAACTGAAGCAAATCGGTG+TGG 0.762633 6_1:+28945942 Msa0881610:CDS
ATTCGGAATCTGAAGCACAG+GGG 0.790178 6_1:+28945061 Msa0881610:CDS
AATCAGGAGAGACTTCACAG+GGG 0.878955 6_1:+28943645 Msa0881610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGGAAAAATATTTATTTTT+AGG - chr6_1:28942313-28942332 None:intergenic 10.0%
!!! TTCAAATACAATTTTTTTTA+GGG - chr6_1:28942453-28942472 None:intergenic 10.0%
!!! ATTCAAATACAATTTTTTTT+AGG - chr6_1:28942454-28942473 None:intergenic 10.0%
!! ATACTACTAATAAATAAAAG+AGG - chr6_1:28941321-28941340 None:intergenic 15.0%
!!! TAAACAATTTTTTTTTACAG+GGG - chr6_1:28941698-28941717 None:intergenic 15.0%
!!! CTAAACAATTTTTTTTTACA+GGG - chr6_1:28941699-28941718 None:intergenic 15.0%
!!! TCTAAACAATTTTTTTTTAC+AGG - chr6_1:28941700-28941719 None:intergenic 15.0%
!!! ATTTGAAGATTTTTTTGTTT+TGG - chr6_1:28941905-28941924 None:intergenic 15.0%
!! AAAAAAATCTTCAAATTACA+AGG + chr6_1:28941909-28941928 Msa0881610:intron 15.0%
!!! TTTTTCCAATAAAATTGATT+TGG - chr6_1:28942128-28942147 None:intergenic 15.0%
!!! CTTTTTATACTACTATTATA+AGG - chr6_1:28942332-28942351 None:intergenic 15.0%
!!! TCAAATACAATTTTTTTTAG+GGG - chr6_1:28942452-28942471 None:intergenic 15.0%
!! ATTATTGAAAATAAGTAATG+TGG - chr6_1:28942606-28942625 None:intergenic 15.0%
!!! ACTTATTTTCAATAATGAAA+AGG + chr6_1:28942610-28942629 Msa0881610:CDS 15.0%
!!! CTTATTTTCAATAATGAAAA+GGG + chr6_1:28942611-28942630 Msa0881610:CDS 15.0%
!!! ATAATGTACTTGATTTTTTA+GGG + chr6_1:28944165-28944184 Msa0881610:CDS 15.0%
!!! TTTTTGAAATGTATAAAAGA+TGG + chr6_1:28945103-28945122 Msa0881610:CDS 15.0%
!! AATAAGATTGATCAATAAAA+GGG - chr6_1:28945570-28945589 None:intergenic 15.0%
!! AAATAAGATTGATCAATAAA+AGG - chr6_1:28945571-28945590 None:intergenic 15.0%
!!! TTTATTGATCAATCTTATTT+TGG + chr6_1:28945571-28945590 Msa0881610:CDS 15.0%
!!! TTCTTTACTTTTTTTTTGTG+TGG + chr6_1:28941452-28941471 Msa0881610:intron 20.0%
!!! TTTTCTCTAAAAAAGATGAT+AGG - chr6_1:28941591-28941610 None:intergenic 20.0%
!! TTATGCCGTATAAAATAAAT+AGG + chr6_1:28941628-28941647 Msa0881610:intron 20.0%
!! TATGCCGTATAAAATAAATA+GGG + chr6_1:28941629-28941648 Msa0881610:intron 20.0%
!!! TTGACCCTATTTATTTTATA+CGG - chr6_1:28941636-28941655 None:intergenic 20.0%
!! AAAATCGATAATATGATAGA+GGG + chr6_1:28941778-28941797 Msa0881610:intron 20.0%
!! GCTTCAAATTACAAAATTTA+AGG - chr6_1:28941873-28941892 None:intergenic 20.0%
!! GTTATTTATATATTAGGTGT+TGG + chr6_1:28942367-28942386 Msa0881610:intron 20.0%
!!! CAAATACAATTTTTTTTAGG+GGG - chr6_1:28942451-28942470 None:intergenic 20.0%
!! GTTGACAACAAAAAAAATTA+TGG - chr6_1:28942484-28942503 None:intergenic 20.0%
!!! TTGTGTTATCATTTTCAATT+TGG - chr6_1:28943035-28943054 None:intergenic 20.0%
!! TATCCATTGCTAAAAATATA+TGG - chr6_1:28943132-28943151 None:intergenic 20.0%
!!! GATAATGTACTTGATTTTTT+AGG + chr6_1:28944164-28944183 Msa0881610:CDS 20.0%
!!! TTAAATGCTTGATAACAATT+TGG - chr6_1:28945666-28945685 None:intergenic 20.0%
!!! TTTTTGTCTTGTTTTTGTGT+AGG + chr6_1:28941376-28941395 Msa0881610:intron 25.0%
! ATGTAAAAGAAGAATAAGCA+TGG - chr6_1:28941422-28941441 None:intergenic 25.0%
! CCAAAAATCTTCAAATTACA+GGG - chr6_1:28941729-28941748 None:intergenic 25.0%
! ACCAAAAATCTTCAAATTAC+AGG - chr6_1:28941730-28941749 None:intergenic 25.0%
! CAAAATCGATAATATGATAG+AGG + chr6_1:28941777-28941796 Msa0881610:intron 25.0%
! TGAAATTCTCTCAAATTACA+GGG + chr6_1:28941837-28941856 Msa0881610:intron 25.0%
!!! TTTTTTGTTTTGGACTTTCA+TGG - chr6_1:28941895-28941914 None:intergenic 25.0%
!! GAAGTCCAAATCAATTTTAT+TGG + chr6_1:28942120-28942139 Msa0881610:intron 25.0%
!! AAACACATTAGCAATTTTTG+AGG - chr6_1:28942178-28942197 None:intergenic 25.0%
! TCTTAAAATGTTGTGTACTT+TGG + chr6_1:28942751-28942770 Msa0881610:intron 25.0%
! TTTATATCACTCGATTAACA+AGG - chr6_1:28942972-28942991 None:intergenic 25.0%
!!! TTTCAATTTGGCTACTTTTA+TGG - chr6_1:28943023-28943042 None:intergenic 25.0%
!!! CAACCATATATTTTTAGCAA+TGG + chr6_1:28943126-28943145 Msa0881610:CDS 25.0%
! CAATTCTCTTGGATAATAAA+TGG + chr6_1:28943769-28943788 Msa0881610:CDS 25.0%
! ACGTAATTAAACTTCTCAAA+TGG - chr6_1:28943924-28943943 None:intergenic 25.0%
! GGACAAAATCAAAGAAAAAT+TGG + chr6_1:28943947-28943966 Msa0881610:CDS 25.0%
! TTAAATCAGTGAATGTTGAT+TGG + chr6_1:28944189-28944208 Msa0881610:CDS 25.0%
!!! AAACTGGTCTTCAATATTTA+AGG + chr6_1:28944295-28944314 Msa0881610:CDS 25.0%
!!! AACTGGTCTTCAATATTTAA+GGG + chr6_1:28944296-28944315 Msa0881610:CDS 25.0%
! AATGAAAATTATGTTGAGCT+CGG + chr6_1:28944857-28944876 Msa0881610:CDS 25.0%
!! TTTAAAATCACCCTCATATT+TGG + chr6_1:28945681-28945700 Msa0881610:CDS 25.0%
!! TGCATTTTTGATGTATTCAA+CGG + chr6_1:28945865-28945884 Msa0881610:CDS 25.0%
! TAGAATTTATGATCAATCAC+AGG - chr6_1:28945895-28945914 None:intergenic 25.0%
! GTGATTGATCATAAATTCTA+TGG + chr6_1:28945895-28945914 Msa0881610:CDS 25.0%
! AAAAATGAACTGAAGCAAAT+CGG + chr6_1:28945937-28945956 Msa0881610:CDS 25.0%
TTACAGTTACAGAAGATCAA+TGG + chr6_1:28941114-28941133 Msa0881610:exon 30.0%
! AACATCTTTTGCATAAAGCT+CGG - chr6_1:28941248-28941267 None:intergenic 30.0%
AAAAGATGTTCATTTCCTGA+TGG + chr6_1:28941258-28941277 Msa0881610:CDS 30.0%
TAAAAGAGGTGAAACAGAAA+AGG - chr6_1:28941307-28941326 None:intergenic 30.0%
ATACGGCATAATAAGATGAT+AGG - chr6_1:28941619-28941638 None:intergenic 30.0%
!!! TTTTTTTTACAGGGGTAAAC+CGG - chr6_1:28941690-28941709 None:intergenic 30.0%
! CCCTGTAATTTGAAGATTTT+TGG + chr6_1:28941726-28941745 Msa0881610:intron 30.0%
AAACCGAAATATCCATGATA+TGG + chr6_1:28941802-28941821 Msa0881610:intron 30.0%
CTACCATATCATGGATATTT+CGG - chr6_1:28941808-28941827 None:intergenic 30.0%
GAAATATCCATGATATGGTA+GGG + chr6_1:28941807-28941826 Msa0881610:intron 30.0%
AAATATCCATGATATGGTAG+GGG + chr6_1:28941808-28941827 Msa0881610:intron 30.0%
CTGAAATTCTCTCAAATTAC+AGG + chr6_1:28941836-28941855 Msa0881610:intron 30.0%
GAAATTCTCTCAAATTACAG+GGG + chr6_1:28941838-28941857 Msa0881610:intron 30.0%
AAATTCTCTCAAATTACAGG+GGG + chr6_1:28941839-28941858 Msa0881610:intron 30.0%
CAATTGTCTTAGTGTTTGTT+TGG + chr6_1:28941937-28941956 Msa0881610:intron 30.0%
!!! TTAGTGTTTGTTTGGTTTTG+TGG + chr6_1:28941945-28941964 Msa0881610:intron 30.0%
!! TTTGTAGCTTTTGACTACAA+AGG - chr6_1:28942073-28942092 None:intergenic 30.0%
TTGAAAATAAGTAATGTGGC+TGG - chr6_1:28942602-28942621 None:intergenic 30.0%
! ATAGTCAACTATCTCTCTTT+TGG + chr6_1:28942942-28942961 Msa0881610:intron 30.0%
TATAAAACCATGCTTGACTA+TGG + chr6_1:28942986-28943005 Msa0881610:intron 30.0%
GTTTGACAAAATCTCTCTTA+TGG + chr6_1:28943057-28943076 Msa0881610:intron 30.0%
TATGGTTGAATTTCAGGAAT+CGG + chr6_1:28943075-28943094 Msa0881610:intron 30.0%
TTAGCAATGGATATCAGATA+AGG + chr6_1:28943139-28943158 Msa0881610:CDS 30.0%
TTGGATATATAGTTCCTGAA+TGG + chr6_1:28943193-28943212 Msa0881610:CDS 30.0%
TGGATATATAGTTCCTGAAT+GGG + chr6_1:28943194-28943213 Msa0881610:CDS 30.0%
TATCTGCTTTATGTCAACAA+GGG - chr6_1:28943235-28943254 None:intergenic 30.0%
ATATCTGCTTTATGTCAACA+AGG - chr6_1:28943236-28943255 None:intergenic 30.0%
GTTGACATAAAGCAGATATA+TGG + chr6_1:28943237-28943256 Msa0881610:CDS 30.0%
GTAAGAAACAAAAGAACTTC+TGG - chr6_1:28943354-28943373 None:intergenic 30.0%
CATTAACTTCTCTTACAGAA+AGG - chr6_1:28943389-28943408 None:intergenic 30.0%
AGAGAAGTTAATGAAAATCC+TGG + chr6_1:28943396-28943415 Msa0881610:CDS 30.0%
! ATTGTTACTATTTTCCTCTG+CGG - chr6_1:28943514-28943533 None:intergenic 30.0%
GGAAAATAGTAACAATGAGA+AGG + chr6_1:28943518-28943537 Msa0881610:CDS 30.0%
AAGAACAAATGTGGAAGAAT+GGG + chr6_1:28943602-28943621 Msa0881610:CDS 30.0%
!! AAATCGGCTTGAATAATGAA+AGG - chr6_1:28943726-28943745 None:intergenic 30.0%
TTGGATAATAAATGGAACCA+AGG + chr6_1:28943777-28943796 Msa0881610:CDS 30.0%
TGGATAATAAATGGAACCAA+GGG + chr6_1:28943778-28943797 Msa0881610:CDS 30.0%
!! TGTTTTGAATGCATCCATAA+AGG - chr6_1:28943826-28943845 None:intergenic 30.0%
TCAAATGGAGAACTTTCAAT+GGG - chr6_1:28943909-28943928 None:intergenic 30.0%
TTGAGAAGTTTAATTACGTG+AGG + chr6_1:28943925-28943944 Msa0881610:CDS 30.0%
TGAGAAGTTTAATTACGTGA+GGG + chr6_1:28943926-28943945 Msa0881610:CDS 30.0%
GTCAAAATATTCCAGAATTC+AGG - chr6_1:28944053-28944072 None:intergenic 30.0%
TTAACCTATCTTCTCATGAT+GGG + chr6_1:28944102-28944121 Msa0881610:CDS 30.0%
! TGCTGTTTATTGCTAAAAAC+TGG + chr6_1:28944279-28944298 Msa0881610:CDS 30.0%
! GAAGCGACATATTTTATCAA+TGG - chr6_1:28944341-28944360 None:intergenic 30.0%
! ATAAAATATGTCGCTTCTGA+TGG + chr6_1:28944344-28944363 Msa0881610:CDS 30.0%
! TTCCATCAAAGTTTGTTTCT+GGG - chr6_1:28944555-28944574 None:intergenic 30.0%
! ATTCCATCAAAGTTTGTTTC+TGG - chr6_1:28944556-28944575 None:intergenic 30.0%
AGAAACAAACTTTGATGGAA+TGG + chr6_1:28944555-28944574 Msa0881610:CDS 30.0%
AATACTTCATTGACAAAGAG+TGG - chr6_1:28944694-28944713 None:intergenic 30.0%
!! ACTTGATTGTTTCTAATCCT+TGG + chr6_1:28944831-28944850 Msa0881610:CDS 30.0%
! ACATAATTTTCATTGCTCCA+AGG - chr6_1:28944851-28944870 None:intergenic 30.0%
ATATATCTCCTCCAAATTCT+GGG + chr6_1:28944981-28945000 Msa0881610:CDS 30.0%
!!! AAGCAAAAAGGCATTTTCTT+TGG - chr6_1:28945032-28945051 None:intergenic 30.0%
! AGAAAATGCCTTTTTGCTTT+TGG + chr6_1:28945033-28945052 Msa0881610:CDS 30.0%
AATCCAATCCAAAAGCAAAA+AGG - chr6_1:28945044-28945063 None:intergenic 30.0%
!! TTTTGCTTTTGGATTGGATT+CGG + chr6_1:28945044-28945063 Msa0881610:CDS 30.0%
ATACATTTCAAAAACCTCTC+TGG - chr6_1:28945097-28945116 None:intergenic 30.0%
CTTTGCAAAATATTTCCCAA+TGG - chr6_1:28945193-28945212 None:intergenic 30.0%
! TTGGGAAATATTTTGCAAAG+TGG + chr6_1:28945193-28945212 Msa0881610:CDS 30.0%
ATGATCTTTACTTAGAGTGA+AGG - chr6_1:28945371-28945390 None:intergenic 30.0%
TTAACTTCATCCAATATCTC+AGG + chr6_1:28945404-28945423 Msa0881610:CDS 30.0%
TGTTCACAAATTTATCCAAC+GGG - chr6_1:28945441-28945460 None:intergenic 30.0%
CTGTTCACAAATTTATCCAA+CGG - chr6_1:28945442-28945461 None:intergenic 30.0%
!!! TGATCAATCTTATTTTGGTG+AGG + chr6_1:28945576-28945595 Msa0881610:CDS 30.0%
ATGAACTTAAGACTACACTA+GGG - chr6_1:28945765-28945784 None:intergenic 30.0%
AATGAACTTAAGACTACACT+AGG - chr6_1:28945766-28945785 None:intergenic 30.0%
! TAGTGTAGTCTTAAGTTCAT+TGG + chr6_1:28945765-28945784 Msa0881610:CDS 30.0%
TCATACAAGAAACATTCACT+TGG - chr6_1:28945832-28945851 None:intergenic 30.0%
ATTACGTTACTTCTCCAAGA+AGG + chr6_1:28941023-28941042 Msa0881610:five_prime_UTR 35.0%
! TGTAACTGTAATGAAGTACC+AGG - chr6_1:28941105-28941124 None:intergenic 35.0%
! ATCTCTTCAACGTGTTCTTT+TGG - chr6_1:28941145-28941164 None:intergenic 35.0%
GGAAATCGCTAATATTACAG+GGG - chr6_1:28941669-28941688 None:intergenic 35.0%
CGGAAATCGCTAATATTACA+GGG - chr6_1:28941670-28941689 None:intergenic 35.0%
CCTGTAATATTAGCGATTTC+CGG + chr6_1:28941668-28941687 Msa0881610:intron 35.0%
CGAAATATCCATGATATGGT+AGG + chr6_1:28941806-28941825 Msa0881610:intron 35.0%
AATATCCATGATATGGTAGG+GGG + chr6_1:28941809-28941828 Msa0881610:intron 35.0%
GAGAAAAGTAATACTCTCTC+CGG + chr6_1:28942204-28942223 Msa0881610:intron 35.0%
! AGAGAGAGTATAATAGAGAC+CGG - chr6_1:28942226-28942245 None:intergenic 35.0%
ACTGAGTTTGACAACAAAAG+TGG - chr6_1:28942396-28942415 None:intergenic 35.0%
CATATGGACTCGATGTTATT+TGG - chr6_1:28942644-28942663 None:intergenic 35.0%
AATAACATCGAGTCCATATG+CGG + chr6_1:28942644-28942663 Msa0881610:CDS 35.0%
TGTGTACTTTGGACTCAAAA+TGG + chr6_1:28942762-28942781 Msa0881610:intron 35.0%
CTCTCTTATGGTTGAATTTC+AGG + chr6_1:28943069-28943088 Msa0881610:intron 35.0%
ATATATCCAAGACTGCAATG+TGG - chr6_1:28943183-28943202 None:intergenic 35.0%
ATAAAGCAGATATATGGTGC+TGG + chr6_1:28943243-28943262 Msa0881610:CDS 35.0%
GGTTGAAAGAAGAACAAATG+TGG + chr6_1:28943593-28943612 Msa0881610:CDS 35.0%
GAAGAACAAATGTGGAAGAA+TGG + chr6_1:28943601-28943620 Msa0881610:CDS 35.0%
AAATTAGTGACCATCTCTGT+AGG - chr6_1:28943702-28943721 None:intergenic 35.0%
!! GCATTCAAAACACTTGTTGT+AGG + chr6_1:28943834-28943853 Msa0881610:CDS 35.0%
CTCAAATGGAGAACTTTCAA+TGG - chr6_1:28943910-28943929 None:intergenic 35.0%
CTTAACCTATCTTCTCATGA+TGG + chr6_1:28944101-28944120 Msa0881610:CDS 35.0%
GCATTCATGAAAACTGAAAG+AGG - chr6_1:28944378-28944397 None:intergenic 35.0%
CTTGTTCTTGGTTGATCAAT+TGG + chr6_1:28944456-28944475 Msa0881610:CDS 35.0%
TTGGTTGATCAATTGGAACA+AGG + chr6_1:28944463-28944482 Msa0881610:CDS 35.0%
TGCTTTCAGGCATAAAAAAC+CGG - chr6_1:28944508-28944527 None:intergenic 35.0%
! CAATGAAGTATTTGTCAGAG+CGG + chr6_1:28944702-28944721 Msa0881610:CDS 35.0%
! AATGAAGTATTTGTCAGAGC+GGG + chr6_1:28944703-28944722 Msa0881610:CDS 35.0%
AAATTATGTTGAGCTCGGAA+AGG + chr6_1:28944862-28944881 Msa0881610:CDS 35.0%
CTGCATAAGATGAGGAATTT+AGG - chr6_1:28944892-28944911 None:intergenic 35.0%
CTAAATTCCTCATCTTATGC+AGG + chr6_1:28944890-28944909 Msa0881610:CDS 35.0%
GAGGAAATTAATAAGCTTCC+CGG - chr6_1:28944930-28944949 None:intergenic 35.0%
AATTTCCTCACAACTCATGT+TGG + chr6_1:28944941-28944960 Msa0881610:CDS 35.0%
ATTTCCTCACAACTCATGTT+GGG + chr6_1:28944942-28944961 Msa0881610:CDS 35.0%
GAATTTGGAGGAGATATATG+AGG - chr6_1:28944980-28944999 None:intergenic 35.0%
CATATATCTCCTCCAAATTC+TGG + chr6_1:28944980-28944999 Msa0881610:CDS 35.0%
TTTGGTAAGTGGTGTATCAA+CGG - chr6_1:28945014-28945033 None:intergenic 35.0%
!! AAGGCATTTTCTTTGGTAAG+TGG - chr6_1:28945025-28945044 None:intergenic 35.0%
!! ATGCCTTTTTGCTTTTGGAT+TGG + chr6_1:28945038-28945057 Msa0881610:CDS 35.0%
ATTTCAAAAACCTCTCTGGT+AGG - chr6_1:28945093-28945112 None:intergenic 35.0%
AATGTATAAAAGATGGCAGC+TGG + chr6_1:28945110-28945129 Msa0881610:CDS 35.0%
! ATTAAGAACGACTTTGAAGG+AGG - chr6_1:28945163-28945182 None:intergenic 35.0%
CGAATTAAGAACGACTTTGA+AGG - chr6_1:28945166-28945185 None:intergenic 35.0%
TTCTTAATTCGATCGCCATT+GGG + chr6_1:28945175-28945194 Msa0881610:CDS 35.0%
ATAGAAGCTCTCATCAATCA+GGG - chr6_1:28945239-28945258 None:intergenic 35.0%
TGATTGATGAGAGCTTCTAT+GGG + chr6_1:28945239-28945258 Msa0881610:CDS 35.0%
GAAGAAGAGTTGAAAACTGT+AGG + chr6_1:28945280-28945299 Msa0881610:CDS 35.0%
! GAAGACTTTTCCTGAGATAT+TGG - chr6_1:28945417-28945436 None:intergenic 35.0%
GGAAATATATGACTACGAAG+AGG + chr6_1:28945597-28945616 Msa0881610:CDS 35.0%
! TGTAGTCTTAAGTTCATTGG+AGG + chr6_1:28945768-28945787 Msa0881610:CDS 35.0%
! GTAGTCTTAAGTTCATTGGA+GGG + chr6_1:28945769-28945788 Msa0881610:CDS 35.0%
TGAATGTTTCTTGTATGACC+AGG + chr6_1:28945834-28945853 Msa0881610:CDS 35.0%
ATTTATGATCAATCACAGGC+AGG - chr6_1:28945891-28945910 None:intergenic 35.0%
! ACTGTAATGAAGTACCAGGA+GGG - chr6_1:28941101-28941120 None:intergenic 40.0%
! AACTGTAATGAAGTACCAGG+AGG - chr6_1:28941102-28941121 None:intergenic 40.0%
AACACGTTGAAGAGATACGA+AGG + chr6_1:28941149-28941168 Msa0881610:CDS 40.0%
CGAAGGACAAAGTTCTCTAT+CGG + chr6_1:28941166-28941185 Msa0881610:CDS 40.0%
TGGGAATCCTAATCCTTTGA+CGG + chr6_1:28941189-28941208 Msa0881610:CDS 40.0%
! ATCTTTTGCATAAAGCTCGG+CGG - chr6_1:28941245-28941264 None:intergenic 40.0%
! TTTCCTGATGGAACTGATTC+AGG + chr6_1:28941270-28941289 Msa0881610:CDS 40.0%
CCGGAAATCGCTAATATTAC+AGG - chr6_1:28941671-28941690 None:intergenic 40.0%
GGTCTCTATTATACTCTCTC+TGG + chr6_1:28942225-28942244 Msa0881610:intron 40.0%
TGAAGATAACCACTACAACG+AGG + chr6_1:28942517-28942536 Msa0881610:CDS 40.0%
GAAGATAACCACTACAACGA+GGG + chr6_1:28942518-28942537 Msa0881610:CDS 40.0%
GTTATGACAAACTCCAGTGT+TGG - chr6_1:28942551-28942570 None:intergenic 40.0%
TCTGATGACATTACTGCTAC+TGG + chr6_1:28942572-28942591 Msa0881610:CDS 40.0%
GTTGGACGATCAACAAAGAA+AGG + chr6_1:28942668-28942687 Msa0881610:CDS 40.0%
GATCAACAAAGAAAGGCAAC+AGG + chr6_1:28942675-28942694 Msa0881610:CDS 40.0%
AACAGGAGTAGTGGTTACAT+AGG + chr6_1:28942692-28942711 Msa0881610:CDS 40.0%
AGTGGTTACATAGGAGAGAA+AGG + chr6_1:28942701-28942720 Msa0881610:CDS 40.0%
TCATACTCCATAGTCAAGCA+TGG - chr6_1:28942996-28943015 None:intergenic 40.0%
!! TATAGTTCCTGAATGGGTTG+AGG + chr6_1:28943200-28943219 Msa0881610:CDS 40.0%
TGCTTTATGTCAACAAGGGT+TGG - chr6_1:28943231-28943250 None:intergenic 40.0%
GGCAAGACAATTGTTGTAGT+TGG - chr6_1:28943279-28943298 None:intergenic 40.0%
CATGTGGAAGCAAAAGTTTC+CGG + chr6_1:28943554-28943573 Msa0881610:CDS 40.0%
AAATCAGGAGAGACTTCACA+GGG + chr6_1:28943644-28943663 Msa0881610:CDS 40.0%
TGCATTTCTTCCTACAGAGA+TGG + chr6_1:28943689-28943708 Msa0881610:CDS 40.0%
TGATGAGGCAAGGACAAAAT+CGG - chr6_1:28943742-28943761 None:intergenic 40.0%
! ATTTTGTCCTTGCCTCATCA+AGG + chr6_1:28943742-28943761 Msa0881610:CDS 40.0%
! TTTTGTCCTTGCCTCATCAA+GGG + chr6_1:28943743-28943762 Msa0881610:CDS 40.0%
ATCAAGGGAGACAATTCTCT+TGG + chr6_1:28943758-28943777 Msa0881610:CDS 40.0%
GAACACATTCAAGTATCCCT+TGG - chr6_1:28943797-28943816 None:intergenic 40.0%
ATGTGTTCCAACAGCCTTTA+TGG + chr6_1:28943809-28943828 Msa0881610:CDS 40.0%
AATGCATCCATAAAGGCTGT+TGG - chr6_1:28943819-28943838 None:intergenic 40.0%
ATGGAGAACTTTCAATGGGA+AGG - chr6_1:28943905-28943924 None:intergenic 40.0%
ATAAGCCTGGTGAAGTTAGT+AGG + chr6_1:28944021-28944040 Msa0881610:CDS 40.0%
! CATCCAGAGTTCTAATCTTG+TGG + chr6_1:28944223-28944242 Msa0881610:CDS 40.0%
CATCCACAAGATTAGAACTC+TGG - chr6_1:28944229-28944248 None:intergenic 40.0%
! CAGAGTTCTAATCTTGTGGA+TGG + chr6_1:28944227-28944246 Msa0881610:CDS 40.0%
GTCAGTCTAATGCTTGTTCT+TGG + chr6_1:28944444-28944463 Msa0881610:CDS 40.0%
AACAAGGAATTTGCATGTGC+AGG + chr6_1:28944479-28944498 Msa0881610:CDS 40.0%
AATTTGCATGTGCAGGAAAC+CGG + chr6_1:28944486-28944505 Msa0881610:CDS 40.0%
! TATGCCTGAAAGCACACAAA+AGG + chr6_1:28944514-28944533 Msa0881610:CDS 40.0%
!! TTTGTTTCTGGGCTAAACGT+AGG - chr6_1:28944544-28944563 None:intergenic 40.0%
AGCCCAGAAACAAACTTTGA+TGG + chr6_1:28944550-28944569 Msa0881610:CDS 40.0%
! ATGCCACTTGTTGACAACTA+TGG + chr6_1:28944749-28944768 Msa0881610:CDS 40.0%
! TGCCACTTGTTGACAACTAT+GGG + chr6_1:28944750-28944769 Msa0881610:CDS 40.0%
CGTGTCACAGAAACAAGAAA+AGG + chr6_1:28944773-28944792 Msa0881610:CDS 40.0%
! AAATTGGCCTGCATAAGATG+AGG - chr6_1:28944900-28944919 None:intergenic 40.0%
TCTTATGCAGGCCAATTTAC+AGG + chr6_1:28944902-28944921 Msa0881610:CDS 40.0%
TTTCCTCACAACTCATGTTG+GGG + chr6_1:28944943-28944962 Msa0881610:CDS 40.0%
TGGCTTAAAGTTACCGTCAA+TGG + chr6_1:28945130-28945149 Msa0881610:CDS 40.0%
AAGTTACCGTCAATGGATAC+AGG + chr6_1:28945137-28945156 Msa0881610:CDS 40.0%
GTTCTTAATTCGATCGCCAT+TGG + chr6_1:28945174-28945193 Msa0881610:CDS 40.0%
TAGAAGCTCTCATCAATCAG+GGG - chr6_1:28945238-28945257 None:intergenic 40.0%
CATAGAAGCTCTCATCAATC+AGG - chr6_1:28945240-28945259 None:intergenic 40.0%
CTGATTGATGAGAGCTTCTA+TGG + chr6_1:28945238-28945257 Msa0881610:CDS 40.0%
GATTGATGAGAGCTTCTATG+GGG + chr6_1:28945240-28945259 Msa0881610:CDS 40.0%
TTTGTGAACAGCATCAGAGA+TGG + chr6_1:28945451-28945470 Msa0881610:CDS 40.0%
ACCTTGGCTAAAGACATCTT+TGG + chr6_1:28945474-28945493 Msa0881610:CDS 40.0%
CCTTGGCTAAAGACATCTTT+GGG + chr6_1:28945475-28945494 Msa0881610:CDS 40.0%
GGATCAGTATTGCATGATTC+CGG + chr6_1:28945514-28945533 Msa0881610:CDS 40.0%
AAGTTGTTGGGAGTGATAGT+TGG + chr6_1:28945625-28945644 Msa0881610:CDS 40.0%
GTCAAAGAGGCCAAATATGA+GGG - chr6_1:28945694-28945713 None:intergenic 40.0%
TGTCAAAGAGGCCAAATATG+AGG - chr6_1:28945695-28945714 None:intergenic 40.0%
GATGATATGCATCAGATCCA+TGG + chr6_1:28945735-28945754 Msa0881610:CDS 40.0%
AAGCTGCTTGAAGACAAACA+TGG + chr6_1:28945795-28945814 Msa0881610:CDS 40.0%
AGCTGCTTGAAGACAAACAT+GGG + chr6_1:28945796-28945815 Msa0881610:CDS 40.0%
TTTCTTGTATGACCAGGTGT+GGG + chr6_1:28945840-28945859 Msa0881610:CDS 40.0%
TGCTTCTCTCTTCAAACAGA+CGG + chr6_1:28945996-28946015 Msa0881610:intron 40.0%
CTGTCTGCAACAAGAAAGAA+AGG - chr6_1:28946058-28946077 None:intergenic 40.0%
ACACAGTGAAGACTCCTTCT+TGG - chr6_1:28941040-28941059 None:intergenic 45.0%
AGGACAAAGTTCTCTATCGG+TGG + chr6_1:28941169-28941188 Msa0881610:CDS 45.0%
GGACAAAGTTCTCTATCGGT+GGG + chr6_1:28941170-28941189 Msa0881610:CDS 45.0%
GAATCCTAATCCTTTGACGG+AGG + chr6_1:28941192-28941211 Msa0881610:CDS 45.0%
AGATCCTCCGTCAAAGGATT+AGG - chr6_1:28941199-28941218 None:intergenic 45.0%
CGGAAAGATTCTTAACGGCA+TGG - chr6_1:28941225-28941244 None:intergenic 45.0%
CTCGGCGGAAAGATTCTTAA+CGG - chr6_1:28941230-28941249 None:intergenic 45.0%
GTACCTGAATCAGTTCCATC+AGG - chr6_1:28941276-28941295 None:intergenic 45.0%
GTTTACCCCCTACCATATCA+TGG - chr6_1:28941817-28941836 None:intergenic 45.0%
AAGAAAGGCAACAGGAGTAG+TGG + chr6_1:28942683-28942702 Msa0881610:CDS 45.0%
! CGGATTCAAGAGTGTGTTTC+TGG + chr6_1:28943095-28943114 Msa0881610:CDS 45.0%
AATTGTCTTGCCCTTGAAGC+CGG + chr6_1:28943287-28943306 Msa0881610:CDS 45.0%
TTGACCTTATCCGGCTTCAA+GGG - chr6_1:28943300-28943319 None:intergenic 45.0%
TTGACAGGGTTGACCTTATC+CGG - chr6_1:28943309-28943328 None:intergenic 45.0%
! CTGAAAGCTGCTGTTTGACA+GGG - chr6_1:28943323-28943342 None:intergenic 45.0%
GCGAGATTAACTTCGTGCAA+AGG + chr6_1:28943451-28943470 Msa0881610:CDS 45.0%
AGGAATGCAGCTACTACATG+TGG + chr6_1:28943538-28943557 Msa0881610:CDS 45.0%
!! AAGTCTCTCCTGATTTGGCA+AGG - chr6_1:28943640-28943659 None:intergenic 45.0%
CTGTGAAGTCTCTCCTGATT+TGG - chr6_1:28943645-28943664 None:intergenic 45.0%
CAAATCAGGAGAGACTTCAC+AGG + chr6_1:28943643-28943662 Msa0881610:CDS 45.0%
AATCAGGAGAGACTTCACAG+GGG + chr6_1:28943645-28943664 Msa0881610:CDS 45.0%
GAGAATTGTCTCCCTTGATG+AGG - chr6_1:28943757-28943776 None:intergenic 45.0%
ACTGGATACTGGAGCTTGAT+CGG - chr6_1:28943862-28943881 None:intergenic 45.0%
TCAAGCTCCAGTATCCAGTT+TGG + chr6_1:28943863-28943882 Msa0881610:CDS 45.0%
ATGCGAACCAAACTGGATAC+TGG - chr6_1:28943873-28943892 None:intergenic 45.0%
CTTGAACATGCGAACCAAAC+TGG - chr6_1:28943880-28943899 None:intergenic 45.0%
TGCTCTGTGTACGTCTCAAT+AGG - chr6_1:28943990-28944009 None:intergenic 45.0%
!! CAGAAGCACTTCTATAAGCC+TGG + chr6_1:28944008-28944027 Msa0881610:CDS 45.0%
!!! GGAATATTTTGACCGAAGCC+CGG + chr6_1:28944060-28944079 Msa0881610:CDS 45.0%
!!! GAATATTTTGACCGAAGCCC+GGG + chr6_1:28944061-28944080 Msa0881610:CDS 45.0%
!!! AATATTTTGACCGAAGCCCG+GGG + chr6_1:28944062-28944081 Msa0881610:CDS 45.0%
! ACCTATCTTCTCATGATGGG+AGG + chr6_1:28944105-28944124 Msa0881610:CDS 45.0%
TCCTCCCATCATGAGAAGAT+AGG - chr6_1:28944109-28944128 None:intergenic 45.0%
! ATCGCCTTTTGTGTGCTTTC+AGG - chr6_1:28944521-28944540 None:intergenic 45.0%
AACAGAACTGCAGACGACAT+TGG - chr6_1:28944627-28944646 None:intergenic 45.0%
TGCCTGCAAATGTGAGCAAA+TGG + chr6_1:28944804-28944823 Msa0881610:CDS 45.0%
GCCTGCAAATGTGAGCAAAT+GGG + chr6_1:28944805-28944824 Msa0881610:CDS 45.0%
GCTGAAAACCCAGAATTTGG+AGG - chr6_1:28944992-28945011 None:intergenic 45.0%
ACGGCTGAAAACCCAGAATT+TGG - chr6_1:28944995-28945014 None:intergenic 45.0%
! GATTCGGAATCTGAAGCACA+GGG + chr6_1:28945060-28945079 Msa0881610:CDS 45.0%
! ATTCGGAATCTGAAGCACAG+GGG + chr6_1:28945061-28945080 Msa0881610:CDS 45.0%
AGAAGCTCTCATCAATCAGG+GGG - chr6_1:28945237-28945256 None:intergenic 45.0%
! GAGGAAGCATGCAGTTTCAT+TGG + chr6_1:28945319-28945338 Msa0881610:CDS 45.0%
CCCAAAGATGTCTTTAGCCA+AGG - chr6_1:28945478-28945497 None:intergenic 45.0%
TCATGCAATACTGATCCCAC+AGG - chr6_1:28945511-28945530 None:intergenic 45.0%
CAGTATTGCATGATTCCGGA+TGG + chr6_1:28945518-28945537 Msa0881610:CDS 45.0%
GAAGAGGAGCTGAAGTTGTT+GGG + chr6_1:28945613-28945632 Msa0881610:CDS 45.0%
GTTTCTTGTATGACCAGGTG+TGG + chr6_1:28945839-28945858 Msa0881610:CDS 45.0%
TTCTTGTATGACCAGGTGTG+GGG + chr6_1:28945841-28945860 Msa0881610:CDS 45.0%
TGAACTGAAGCAAATCGGTG+TGG + chr6_1:28945942-28945961 Msa0881610:CDS 45.0%
TTCTTGTTGCAGACAGCTGA+AGG + chr6_1:28946062-28946081 Msa0881610:intron 45.0%
TCTTGTTGCAGACAGCTGAA+GGG + chr6_1:28946063-28946082 Msa0881610:intron 45.0%
CAGCTGAAGGGAACTGTTTA+TGG + chr6_1:28946075-28946094 Msa0881610:CDS 45.0%
!!! ATTTTAGTTATTTATATATT+AGG + chr6_1:28942361-28942380 Msa0881610:intron 5.0%
!!! AATTTTAATCTTTTTTTAAA+AGG + chr6_1:28942891-28942910 Msa0881610:intron 5.0%
ACCATTCTCTTCTTCCCTCC+TGG + chr6_1:28941084-28941103 Msa0881610:five_prime_UTR 50.0%
ACCAGGAGGGAAGAAGAGAA+TGG - chr6_1:28941088-28941107 None:intergenic 50.0%
TGGTGAAGATCCTCCGTCAA+AGG - chr6_1:28941205-28941224 None:intergenic 50.0%
GTTTCACTCCCTCGTTGTAG+TGG - chr6_1:28942529-28942548 None:intergenic 50.0%
ATCGAGTCCATATGCGGTGT+TGG + chr6_1:28942650-28942669 Msa0881610:CDS 50.0%
TGATCGTCCAACACCGCATA+TGG - chr6_1:28942660-28942679 None:intergenic 50.0%
CCAAGACTGCAATGTGGACA+AGG - chr6_1:28943177-28943196 None:intergenic 50.0%
CCTTGTCCACATTGCAGTCT+TGG + chr6_1:28943174-28943193 Msa0881610:CDS 50.0%
GTTGACCTTATCCGGCTTCA+AGG - chr6_1:28943301-28943320 None:intergenic 50.0%
! CCTGAAAGCTGCTGTTTGAC+AGG - chr6_1:28943324-28943343 None:intergenic 50.0%
CCTGTCAAACAGCAGCTTTC+AGG + chr6_1:28943321-28943340 Msa0881610:CDS 50.0%
CACACTATATCTCTCCGCAG+AGG + chr6_1:28943497-28943516 Msa0881610:CDS 50.0%
GGAAGCAAAAGTTTCCGGTC+AGG + chr6_1:28943559-28943578 Msa0881610:CDS 50.0%
ACCACACTTTCTGACCTGAC+CGG - chr6_1:28943576-28943595 None:intergenic 50.0%
!! GGAAGAATGGGTTGTGACAC+TGG + chr6_1:28943614-28943633 Msa0881610:CDS 50.0%
ACAGGGGTAAAAGCTCACCA+GGG + chr6_1:28943661-28943680 Msa0881610:CDS 50.0%
GGAAGAAATGCATAGACCCC+TGG - chr6_1:28943681-28943700 None:intergenic 50.0%
TTGTCTCCCTTGATGAGGCA+AGG - chr6_1:28943752-28943771 None:intergenic 50.0%
AGCAGCCTACTAACTTCACC+AGG - chr6_1:28944029-28944048 None:intergenic 50.0%
GAATGCACACAGCACTATGC+AGG + chr6_1:28944392-28944411 Msa0881610:CDS 50.0%
! GAAGTATTTGTCAGAGCGGG+AGG + chr6_1:28944706-28944725 Msa0881610:CDS 50.0%
CGCCCATAGTTGTCAACAAG+TGG - chr6_1:28944755-28944774 None:intergenic 50.0%
GCCCATTTGCTCACATTTGC+AGG - chr6_1:28944809-28944828 None:intergenic 50.0%
GCAGGCCAATTTACAGGTTC+CGG + chr6_1:28944908-28944927 Msa0881610:CDS 50.0%
CAGGCCAATTTACAGGTTCC+GGG + chr6_1:28944909-28944928 Msa0881610:CDS 50.0%
GCTTCCCGGAACCTGTAAAT+TGG - chr6_1:28944916-28944935 None:intergenic 50.0%
AAGCCCCAACATGAGTTGTG+AGG - chr6_1:28944949-28944968 None:intergenic 50.0%
! GGATTCGGAATCTGAAGCAC+AGG + chr6_1:28945059-28945078 Msa0881610:CDS 50.0%
AGGAGGCCTGTATCCATTGA+CGG - chr6_1:28945146-28945165 None:intergenic 50.0%
AGGAGTGATGTCCAGTTGTG+AGG + chr6_1:28945300-28945319 Msa0881610:CDS 50.0%
ACTGCATGCTTCCTCACAAC+TGG - chr6_1:28945314-28945333 None:intergenic 50.0%
CAGGAAAAGTCTTCTCCCGT+TGG + chr6_1:28945423-28945442 Msa0881610:CDS 50.0%
ACAGCATCAGAGATGGACCT+TGG + chr6_1:28945458-28945477 Msa0881610:CDS 50.0%
CGAAGAGGAGCTGAAGTTGT+TGG + chr6_1:28945612-28945631 Msa0881610:CDS 50.0%
GGAGTGATAGTTGGCACAAG+TGG + chr6_1:28945634-28945653 Msa0881610:CDS 50.0%
TTTGGCCTCTTTGACAGCTG+AGG + chr6_1:28945699-28945718 Msa0881610:CDS 50.0%
AACAGCCTCAGCTGTCAAAG+AGG - chr6_1:28945707-28945726 None:intergenic 50.0%
GACTACACTAGGGTCATCCA+TGG - chr6_1:28945755-28945774 None:intergenic 50.0%
ACTGAAGCAAATCGGTGTGG+TGG + chr6_1:28945945-28945964 Msa0881610:CDS 50.0%
CGAGGGAGTGAAACCAACAC+TGG + chr6_1:28942535-28942554 Msa0881610:CDS 55.0%
GGCTTCTCCTCAACCCATTC+AGG - chr6_1:28943210-28943229 None:intergenic 55.0%
CTTGCCCTTGAAGCCGGATA+AGG + chr6_1:28943293-28943312 Msa0881610:CDS 55.0%
GCAGTTACAGTGCTCTGTCC+AGG - chr6_1:28943417-28943436 None:intergenic 55.0%
TCCGGTCAGGTCAGAAAGTG+TGG + chr6_1:28943572-28943591 Msa0881610:CDS 55.0%
!! GACACTGGCCTTGCCAAATC+AGG + chr6_1:28943629-28943648 Msa0881610:CDS 55.0%
CACAGGGGTAAAAGCTCACC+AGG + chr6_1:28943660-28943679 Msa0881610:CDS 55.0%
CAGGGGTAAAAGCTCACCAG+GGG + chr6_1:28943662-28943681 Msa0881610:CDS 55.0%
GTAGGCTGCTGCCTGAATTC+TGG + chr6_1:28944039-28944058 Msa0881610:CDS 55.0%
CTGAGATGCGACTTGCCATC+CGG - chr6_1:28945536-28945555 None:intergenic 55.0%
CAAAAATGCAGCCCCACACC+TGG - chr6_1:28945855-28945874 None:intergenic 55.0%
CAAGTACACTCCTTCGCCCC+GGG - chr6_1:28944081-28944100 None:intergenic 60.0%
GCAAGTACACTCCTTCGCCC+CGG - chr6_1:28944082-28944101 None:intergenic 60.0%
! GGGGAGTGCACCTACCAGAG+AGG + chr6_1:28945080-28945099 Msa0881610:CDS 65.0%
TTGACCGAAGCCCGGGGCGA+AGG + chr6_1:28944068-28944087 Msa0881610:CDS 70.0%
CACTCCTTCGCCCCGGGCTT+CGG - chr6_1:28944075-28944094 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 28941001 28946109 28941001 ID=Msa0881610;Name=Msa0881610
chr6_1 mRNA 28941001 28946109 28941001 ID=Msa0881610-mRNA-1;Parent=Msa0881610;Name=Msa0881610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=132|0.66|0.5|1|1|1|4|0|1093
chr6_1 exon 28941001 28941291 28941001 ID=Msa0881610-mRNA-1:exon:7394;Parent=Msa0881610-mRNA-1
chr6_1 exon 28942512 28942722 28942512 ID=Msa0881610-mRNA-1:exon:7395;Parent=Msa0881610-mRNA-1
chr6_1 exon 28943091 28945966 28943091 ID=Msa0881610-mRNA-1:exon:7396;Parent=Msa0881610-mRNA-1
chr6_1 exon 28946074 28946109 28946074 ID=Msa0881610-mRNA-1:exon:7397;Parent=Msa0881610-mRNA-1
chr6_1 five_prime_UTR 28941001 28941132 28941001 ID=Msa0881610-mRNA-1:five_prime_utr;Parent=Msa0881610-mRNA-1
chr6_1 CDS 28941133 28941291 28941133 ID=Msa0881610-mRNA-1:cds;Parent=Msa0881610-mRNA-1
chr6_1 CDS 28942512 28942722 28942512 ID=Msa0881610-mRNA-1:cds;Parent=Msa0881610-mRNA-1
chr6_1 CDS 28943091 28945966 28943091 ID=Msa0881610-mRNA-1:cds;Parent=Msa0881610-mRNA-1
chr6_1 CDS 28946074 28946109 28946074 ID=Msa0881610-mRNA-1:cds;Parent=Msa0881610-mRNA-1
Gene Sequence

>Msa0881610

ATGGCTACACCAAAAGAACACGTTGAAGAGATACGAAGGACAAAGTTCTCTATCGGTGGGAATCCTAATCCTTTGACGGAGGATCTTCACCATGCCGTTAAGAATCTTTCCGCCGAGCTTTATGCAAAAGATGTTCATTTCCTGATGGAACTGATTCAGAATGCTGAAGATAACCACTACAACGAGGGAGTGAAACCAACACTGGAGTTTGTCATAACTTCTGATGACATTACTGCTACTGGTGCTCCAGCCACATTACTTATTTTCAATAATGAAAAGGGTTTCTCTCCAAATAACATCGAGTCCATATGCGGTGTTGGACGATCAACAAAGAAAGGCAACAGGAGTAGTGGTTACATAGGAGAGAAAGGAATCGGATTCAAGAGTGTGTTTCTGGTTAGTGCTCAACCATATATTTTTAGCAATGGATATCAGATAAGGTTCAATGAGATGCCTTGTCCACATTGCAGTCTTGGATATATAGTTCCTGAATGGGTTGAGGAGAAGCCAACCCTTGTTGACATAAAGCAGATATATGGTGCTGGTGAAGCTCTTCCAACTACAACAATTGTCTTGCCCTTGAAGCCGGATAAGGTCAACCCTGTCAAACAGCAGCTTTCAGGCGTTCATCCAGAAGTTCTTTTGTTTCTTACAAAAATCAGACACCTTTCTGTAAGAGAAGTTAATGAAAATCCTGGACAGAGCACTGTAACTGCTGTATCTATTTCAAGCGAGATTAACTTCGTGCAAAGGAAAAACATGAATTCTGAGTCTTACACACTATATCTCTCCGCAGAGGAAAATAGTAACAATGAGAAGGAATGCAGCTACTACATGTGGAAGCAAAAGTTTCCGGTCAGGTCAGAAAGTGTGGTTGAAAGAAGAACAAATGTGGAAGAATGGGTTGTGACACTGGCCTTGCCAAATCAGGAGAGACTTCACAGGGGTAAAAGCTCACCAGGGGTCTATGCATTTCTTCCTACAGAGATGGTCACTAATTTTCCTTTCATTATTCAAGCCGATTTTGTCCTTGCCTCATCAAGGGAGACAATTCTCTTGGATAATAAATGGAACCAAGGGATACTTGAATGTGTTCCAACAGCCTTTATGGATGCATTCAAAACACTTGTTGTAGGATCCGATCAAGCTCCAGTATCCAGTTTGGTTCGCATGTTCAAGTTCCTTCCCATTGAAAGTTCTCCATTTGAGAAGTTTAATTACGTGAGGGACAAAATCAAAGAAAAATTGGTTAATGAAAATATTGTTCCTATTGAGACGTACACAGAGCAGAAGCACTTCTATAAGCCTGGTGAAGTTAGTAGGCTGCTGCCTGAATTCTGGAATATTTTGACCGAAGCCCGGGGCGAAGGAGTGTACTTGCTTAACCTATCTTCTCATGATGGGAGGAAGATCTTGAGTTCTTTCTTTGATAAGATTGAATATGATAATGTACTTGATTTTTTAGGGCTTAAATCAGTGAATGTTGATTGGTATGCAAAGTGCATCCAGAGTTCTAATCTTGTGGATGGAGTATCAGAAGATCTCTATCTTCAAATTTTGCTGTTTATTGCTAAAAACTGGTCTTCAATATTTAAGGGCACAGACATAATCAATATTCCATTGATAAAATATGTCGCTTCTGATGGAACTCTATCCTCTTTCAGTTTTCATGAATGCACACAGCACTATGCAGGTGCGAAGCAAGTAGTAATGACAGACTCAAGTCAGTCTAATGCTTGTTCTTGGTTGATCAATTGGAACAAGGAATTTGCATGTGCAGGAAACCGGTTTTTTATGCCTGAAAGCACACAAAAGGCGATCCTACGTTTAGCCCAGAAACAAACTTTGATGGAATGGCTTGCAAACGACGTTTATGTTACTAATTTGAGCGTGTACAGTTTTGCCAATGTCGTCTGCAGTTCTGTTAAAAATAACAGCAAACATGTCATTGCATATGCTCACTTTTTATACCACTCTTTGTCAATGAAGTATTTGTCAGAGCGGGAGGTTGATAGTCTCTGTAATTCTATGCCACTTGTTGACAACTATGGGCGTGTCACAGAAACAAGAAAAGGAGTTCTTGTGCCTGCAAATGTGAGCAAATGGGCAGACTTGATTGTTTCTAATCCTTGGAGCAATGAAAATTATGTTGAGCTCGGAAAGGAGTACCTAAATTCCTCATCTTATGCAGGCCAATTTACAGGTTCCGGGAAGCTTATTAATTTCCTCACAACTCATGTTGGGGCTTCTGACATACCTCATATATCTCCTCCAAATTCTGGGTTTTCAGCCGTTGATACACCACTTACCAAAGAAAATGCCTTTTTGCTTTTGGATTGGATTCGGAATCTGAAGCACAGGGGAGTGCACCTACCAGAGAGGTTTTTGAAATGTATAAAAGATGGCAGCTGGCTTAAAGTTACCGTCAATGGATACAGGCCTCCTTCAAAGTCGTTCTTAATTCGATCGCCATTGGGAAATATTTTGCAAAGTGGTTCAGTTCTTGTTGATATCCCCCTGATTGATGAGAGCTTCTATGGGGAGAGAATAAACGAGTATGAAGAAGAGTTGAAAACTGTAGGAGTGATGTCCAGTTGTGAGGAAGCATGCAGTTTCATTGGAAGAGAACTGATGTCTCGTGCATCTTCCTTCACTCTAAGTAAAGATCATGTTCTTTTGATGCTTAACTTCATCCAATATCTCAGGAAAAGTCTTCTCCCGTTGGATAAATTTGTGAACAGCATCAGAGATGGACCTTGGCTAAAGACATCTTTGGGTCTAAGGTCTCCTGTGGGATCAGTATTGCATGATTCCGGATGGCAAGTCGCATCTCAGATTAGCAATATCCCTTTTATTGATCAATCTTATTTTGGTGAGGAAATATATGACTACGAAGAGGAGCTGAAGTTGTTGGGAGTGATAGTTGGCACAAGTGGAAATTACCAAATTGTTATCAAGCATTTAAAATCACCCTCATATTTGGCCTCTTTGACAGCTGAGGCTGTTCTTCTGCTGATGATATGCATCAGATCCATGGATGACCCTAGTGTAGTCTTAAGTTCATTGGAGGGAACAAGCTGCTTGAAGACAAACATGGGTTTCAAAATACCAAGTGAATGTTTCTTGTATGACCAGGTGTGGGGCTGCATTTTTGATGTATTCAACGGCCTGCCTGTGATTGATCATAAATTCTATGGAGATGATATTTTCTCTTACAAAAATGAACTGAAGCAAATCGGTGTGGTGACAGCTGAAGGGAACTGTTTATGGATTTCCTTCTGA
Protein sequence

>Msa0881610

MATPKEHVEEIRRTKFSIGGNPNPLTEDLHHAVKNLSAELYAKDVHFLMELIQNAEDNHYNEGVKPTLEFVITSDDITATGAPATLLIFNNEKGFSPNNIESICGVGRSTKKGNRSSGYIGEKGIGFKSVFLVSAQPYIFSNGYQIRFNEMPCPHCSLGYIVPEWVEEKPTLVDIKQIYGAGEALPTTTIVLPLKPDKVNPVKQQLSGVHPEVLLFLTKIRHLSVREVNENPGQSTVTAVSISSEINFVQRKNMNSESYTLYLSAEENSNNEKECSYYMWKQKFPVRSESVVERRTNVEEWVVTLALPNQERLHRGKSSPGVYAFLPTEMVTNFPFIIQADFVLASSRETILLDNKWNQGILECVPTAFMDAFKTLVVGSDQAPVSSLVRMFKFLPIESSPFEKFNYVRDKIKEKLVNENIVPIETYTEQKHFYKPGEVSRLLPEFWNILTEARGEGVYLLNLSSHDGRKILSSFFDKIEYDNVLDFLGLKSVNVDWYAKCIQSSNLVDGVSEDLYLQILLFIAKNWSSIFKGTDIINIPLIKYVASDGTLSSFSFHECTQHYAGAKQVVMTDSSQSNACSWLINWNKEFACAGNRFFMPESTQKAILRLAQKQTLMEWLANDVYVTNLSVYSFANVVCSSVKNNSKHVIAYAHFLYHSLSMKYLSEREVDSLCNSMPLVDNYGRVTETRKGVLVPANVSKWADLIVSNPWSNENYVELGKEYLNSSSYAGQFTGSGKLINFLTTHVGASDIPHISPPNSGFSAVDTPLTKENAFLLLDWIRNLKHRGVHLPERFLKCIKDGSWLKVTVNGYRPPSKSFLIRSPLGNILQSGSVLVDIPLIDESFYGERINEYEEELKTVGVMSSCEEACSFIGRELMSRASSFTLSKDHVLLMLNFIQYLRKSLLPLDKFVNSIRDGPWLKTSLGLRSPVGSVLHDSGWQVASQISNIPFIDQSYFGEEIYDYEEELKLLGVIVGTSGNYQIVIKHLKSPSYLASLTAEAVLLLMICIRSMDDPSVVLSSLEGTSCLKTNMGFKIPSECFLYDQVWGCIFDVFNGLPVIDHKFYGDDIFSYKNELKQIGVVTAEGNCLWISF*