Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887550 | XP_013452221.1 | 94.071 | 253 | 5 | 1 | 1 | 243 | 61 | 313 | 2.18e-171 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887550 | sp|B3SGL0|BCH_GENLU | 83.945 | 218 | 26 | 1 | 34 | 242 | 103 | 320 | 3.75e-131 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887550 | A0A072U8Y2 | 94.071 | 253 | 5 | 1 | 1 | 243 | 61 | 313 | 1.04e-171 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0887550 | Msa0913900 | 0.875059 | 4.150712e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887550 | MtrunA17_Chr6g0468841 | 94.071 | 253 | 5 | 1 | 1 | 243 | 61 | 313 | 2.00e-175 | 484 |
| Msa0887550 | MtrunA17_Chr1g0202661 | 75.397 | 252 | 34 | 2 | 2 | 243 | 63 | 296 | 4.90e-130 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887550 | AT4G25700.1 | 69.444 | 252 | 67 | 2 | 1 | 243 | 51 | 301 | 1.32e-126 | 361 |
| Msa0887550 | AT5G52570.1 | 69.200 | 250 | 64 | 3 | 1 | 241 | 52 | 297 | 9.73e-116 | 333 |
| Msa0887550 | AT4G25700.2 | 62.651 | 166 | 52 | 2 | 1 | 157 | 51 | 215 | 2.33e-68 | 210 |
| Msa0887550 | AT4G25700.3 | 62.651 | 166 | 52 | 2 | 1 | 157 | 51 | 215 | 2.33e-68 | 210 |
| Msa0887550 | AT5G52570.2 | 43.983 | 241 | 71 | 8 | 1 | 241 | 52 | 228 | 7.74e-46 | 153 |
Find 77 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTGGAATTACGGTATT+TGG | 0.125275 | 6_1:-49495039 | Msa0887550:CDS |
| AACCGCTGAAATTAAAATTA+TGG | 0.178816 | 6_1:+49494124 | None:intergenic |
| TCAACAAAAGTTGATGTATT+TGG | 0.190043 | 6_1:+49494231 | None:intergenic |
| TCAACAAAATGTAATATATT+TGG | 0.232030 | 6_1:-49494270 | Msa0887550:three_prime_UTR |
| TTCAGGTGGGAATGGAGTTT+TGG | 0.253688 | 6_1:-49497114 | Msa0887550:intron |
| CCAATTTGTCTCTTATATAA+AGG | 0.260881 | 6_1:-49494208 | Msa0887550:three_prime_UTR |
| TCCATTTGTGTGTCACGTTT+TGG | 0.270912 | 6_1:+49498302 | None:intergenic |
| TGCAGCTACCCTTCTGAAAT+AGG | 0.278817 | 6_1:+49494945 | None:intergenic |
| CCTTTATATAAGAGACAAAT+TGG | 0.308078 | 6_1:+49494208 | None:intergenic |
| CGAGCAGGGTCTTGGAATTA+CGG | 0.328060 | 6_1:-49495046 | Msa0887550:intron |
| CACCATTCAGACAAATTTGA+TGG | 0.342320 | 6_1:-49494787 | Msa0887550:CDS |
| GTTAATAATTATTGTACAAA+TGG | 0.351561 | 6_1:+49494363 | None:intergenic |
| TTATTCTCTTGAAGATTTGT+TGG | 0.353841 | 6_1:+49498263 | None:intergenic |
| TTGGTCCCTGGTCTTTGCTT+TGG | 0.354131 | 6_1:-49496617 | Msa0887550:CDS |
| ACCGCTGAAATTAAAATTAT+GGG | 0.358492 | 6_1:+49494125 | None:intergenic |
| GAAATATGAAAGAGCGGAAA+TGG | 0.360518 | 6_1:-49494167 | Msa0887550:three_prime_UTR |
| TAGCCTTGGTATAACATCTA+TGG | 0.360829 | 6_1:-49498144 | Msa0887550:CDS |
| ACTATTGATGTGACAAAGAT+AGG | 0.365226 | 6_1:-49494342 | Msa0887550:three_prime_UTR |
| TACACGATGGTTTGGTTCAT+AGG | 0.366547 | 6_1:-49494999 | Msa0887550:CDS |
| CTTGTTTACGAGCAGGGTCT+TGG | 0.368351 | 6_1:-49495054 | Msa0887550:intron |
| GTCTTGGAATTACGGTATTT+GGG | 0.369555 | 6_1:-49495038 | Msa0887550:CDS |
| GATGGGCTCACAAGGCTCTT+TGG | 0.373333 | 6_1:-49497087 | Msa0887550:CDS |
| TGAAAGAGCGGAAATGGATT+TGG | 0.377824 | 6_1:-49494161 | Msa0887550:three_prime_UTR |
| AAATTTGATGGGGTGCCATA+TGG | 0.380256 | 6_1:-49494775 | Msa0887550:CDS |
| ATTCCTTGGTCTGAAATGTT+TGG | 0.381395 | 6_1:-49497834 | Msa0887550:CDS |
| GATAAGGATAATTACTTTGT+GGG | 0.384155 | 6_1:+49494921 | None:intergenic |
| GTTTGGTTTGTTTAGGGGAG+TGG | 0.392505 | 6_1:-49497861 | Msa0887550:intron |
| CTCCTTCTCTTGCTCTATGA+TGG | 0.395882 | 6_1:+49496723 | None:intergenic |
| CATGTTTGTACACGATGGTT+TGG | 0.400453 | 6_1:-49495007 | Msa0887550:CDS |
| CCCCATCAAATTTGTCTGAA+TGG | 0.428774 | 6_1:+49494785 | None:intergenic |
| TGTGAAAGAAACCAAAGTTA+AGG | 0.446407 | 6_1:+49496645 | None:intergenic |
| TCCAAAACGTGACACACAAA+TGG | 0.461950 | 6_1:-49498303 | Msa0887550:CDS |
| TTTCACAAAGGATTGGTCCC+TGG | 0.464655 | 6_1:-49496629 | Msa0887550:CDS |
| GGTACATTTGCTCTATCAGT+GGG | 0.467717 | 6_1:-49497813 | Msa0887550:CDS |
| AGCTAGAGAAAGAGATAAGT+AGG | 0.469767 | 6_1:-49494499 | Msa0887550:CDS |
| GCTATCGCTCTCCTTAACTT+TGG | 0.478189 | 6_1:-49496656 | Msa0887550:CDS |
| ATAAAATAATTACTCCCTCC+TGG | 0.481086 | 6_1:-49494316 | Msa0887550:three_prime_UTR |
| CTCTTTGGCATGCTTCCTTG+TGG | 0.486910 | 6_1:-49497072 | Msa0887550:CDS |
| AGGGGAGTGGAGAAATTCCT+TGG | 0.491493 | 6_1:-49497848 | Msa0887550:CDS |
| TCCTTCTCTTGCTCTATGAT+GGG | 0.494122 | 6_1:+49496724 | None:intergenic |
| GCAGCTACCCTTCTGAAATA+GGG | 0.497308 | 6_1:+49494946 | None:intergenic |
| GAAATAGGGCACATTGGCAA+TGG | 0.497666 | 6_1:+49494960 | None:intergenic |
| AACTTTGGTTTCTTTCACAA+AGG | 0.499713 | 6_1:-49496641 | Msa0887550:CDS |
| TGGAATTACGGTATTTGGGA+TGG | 0.507193 | 6_1:-49495034 | Msa0887550:CDS |
| TGTGCAGGAACTTGAGGAAG+TGG | 0.514776 | 6_1:-49494534 | Msa0887550:intron |
| ACCATTCAGACAAATTTGAT+GGG | 0.516588 | 6_1:-49494786 | Msa0887550:CDS |
| AAATAGGGCACATTGGCAAT+GGG | 0.524918 | 6_1:+49494961 | None:intergenic |
| TGGTTTCTTTCACAAAGGAT+TGG | 0.527316 | 6_1:-49496636 | Msa0887550:CDS |
| AATTTGATGGGGTGCCATAT+GGG | 0.528890 | 6_1:-49494774 | Msa0887550:CDS |
| CCAATGTGCCCTATTTCAGA+AGG | 0.537951 | 6_1:-49494954 | Msa0887550:CDS |
| GCAGCTGTTATGTCTAGCCT+TGG | 0.540668 | 6_1:-49498158 | Msa0887550:CDS |
| TTGTCTCTTATATAAAGGAT+CGG | 0.560298 | 6_1:-49494203 | Msa0887550:three_prime_UTR |
| AAGTTAAGGAGAGCGATAGC+AGG | 0.561167 | 6_1:+49496659 | None:intergenic |
| ATAACTTGTGCAGGAACTTG+AGG | 0.566052 | 6_1:-49494540 | Msa0887550:intron |
| ACCGCACCAAAGCAAAGACC+AGG | 0.566437 | 6_1:+49496611 | None:intergenic |
| TGGTACATTTGCTCTATCAG+TGG | 0.568666 | 6_1:-49497814 | Msa0887550:CDS |
| CCCTGGTCTTTGCTTTGGTG+CGG | 0.573433 | 6_1:-49496612 | Msa0887550:intron |
| TTGGGCTAGATGGGCTCACA+AGG | 0.578030 | 6_1:-49497095 | Msa0887550:CDS |
| CCATTCAGACAAATTTGATG+GGG | 0.589916 | 6_1:-49494785 | Msa0887550:CDS |
| CCTTCTGAAATAGGGCACAT+TGG | 0.591233 | 6_1:+49494954 | None:intergenic |
| GCCTACATGTTTGTACACGA+TGG | 0.601282 | 6_1:-49495012 | Msa0887550:CDS |
| TCCCATCATAGAGCAAGAGA+AGG | 0.610796 | 6_1:-49496725 | Msa0887550:CDS |
| ATTTGAGAAATATGAAAGAG+CGG | 0.617916 | 6_1:-49494173 | Msa0887550:three_prime_UTR |
| TAGAGAAAGAGATAAGTAGG+AGG | 0.621312 | 6_1:-49494496 | Msa0887550:CDS |
| GTGCAGGAACTTGAGGAAGT+GGG | 0.624242 | 6_1:-49494533 | Msa0887550:intron |
| TACCTCATGCATGTGCCACA+AGG | 0.625761 | 6_1:+49497057 | None:intergenic |
| CAATGTGCCCTATTTCAGAA+GGG | 0.631996 | 6_1:-49494953 | Msa0887550:CDS |
| AAATGGCAGAGAAATTGGCT+AGG | 0.641779 | 6_1:-49498211 | Msa0887550:CDS |
| CAGGAACTTGAGGAAGTGGG+AGG | 0.645926 | 6_1:-49494530 | Msa0887550:CDS |
| GTTCATAGGAGATTCTCAGT+GGG | 0.653215 | 6_1:-49494985 | Msa0887550:CDS |
| TTCCTTGTGGCACATGCATG+AGG | 0.661682 | 6_1:-49497059 | Msa0887550:intron |
| GTACCAAACATTTCAGACCA+AGG | 0.664026 | 6_1:+49497831 | None:intergenic |
| GGTTCATAGGAGATTCTCAG+TGG | 0.672539 | 6_1:-49494986 | Msa0887550:CDS |
| ACCATCGTGTACAAACATGT+AGG | 0.686692 | 6_1:+49495011 | None:intergenic |
| AGGAACTTGAGGAAGTGGGA+GGG | 0.692446 | 6_1:-49494529 | Msa0887550:CDS |
| CCGCACCAAAGCAAAGACCA+GGG | 0.709476 | 6_1:+49496612 | None:intergenic |
| CAGCCATAGATGTTATACCA+AGG | 0.717570 | 6_1:+49498141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAAACTATTACAT+CGG | + | chr6_1:49494480-49494499 | None:intergenic | 10.0% |
| !! | AATAAAAAAAAATGGAAAAT+TGG | + | chr6_1:49494649-49494668 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTCTACTTTTA+GGG | + | chr6_1:49495177-49495196 | None:intergenic | 10.0% |
| !! | TCTTTAATATAAAAATAACA+TGG | + | chr6_1:49496314-49496333 | None:intergenic | 10.0% |
| !! | TATATAAAAATATTAGAGTA+TGG | - | chr6_1:49496365-49496384 | Msa0887550:intron | 10.0% |
| !! | AGAAAAAATTATAAGAAAAA+TGG | - | chr6_1:49496421-49496440 | Msa0887550:intron | 10.0% |
| !! | AAAAAAGTTAAATATGAAAA+TGG | - | chr6_1:49496652-49496671 | Msa0887550:CDS | 10.0% |
| !! | TAAATTGAATATATTTCTTT+AGG | - | chr6_1:49497746-49497765 | Msa0887550:intron | 10.0% |
| !!! | GATGCATTTAATTTTAAATT+TGG | + | chr6_1:49494422-49494441 | None:intergenic | 15.0% |
| !! | ACTAATGTATATAAGAAAAT+TGG | + | chr6_1:49494683-49494702 | None:intergenic | 15.0% |
| !!! | AATTTTCTTATATACATTAG+TGG | - | chr6_1:49494682-49494701 | Msa0887550:intron | 15.0% |
| !!! | TTTTTTATCAAGTGTATTTT+TGG | - | chr6_1:49494914-49494933 | Msa0887550:intron | 15.0% |
| !!! | TTTTTTTTTTCTACTTTTAG+GGG | + | chr6_1:49495176-49495195 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTCTACTTTT+AGG | + | chr6_1:49495178-49495197 | None:intergenic | 15.0% |
| !!! | AATTATTTTAATTTGAGAGT+TGG | - | chr6_1:49495234-49495253 | Msa0887550:intron | 15.0% |
| !!! | ATTATTTTAATTTGAGAGTT+GGG | - | chr6_1:49495235-49495254 | Msa0887550:intron | 15.0% |
| !!! | TAAACTATCCAATAATTTTA+TGG | - | chr6_1:49495420-49495439 | Msa0887550:intron | 15.0% |
| !! | AATCAAACAAATATTCATAT+GGG | + | chr6_1:49495558-49495577 | None:intergenic | 15.0% |
| !! | AAATCAAACAAATATTCATA+TGG | + | chr6_1:49495559-49495578 | None:intergenic | 15.0% |
| !!! | TATTTGTTTGATTTTGATTT+TGG | - | chr6_1:49495565-49495584 | Msa0887550:intron | 15.0% |
| !! | TACAATATTTAAATAACCAA+TGG | - | chr6_1:49495596-49495615 | Msa0887550:intron | 15.0% |
| !! | ATGATATAAACATTTATCAT+TGG | + | chr6_1:49495921-49495940 | None:intergenic | 15.0% |
| !!! | CTATTTTTTTAACTTAAGTT+CGG | + | chr6_1:49495993-49496012 | None:intergenic | 15.0% |
| !!! | ATTTTTTACTTAACTTTGTT+GGG | + | chr6_1:49496482-49496501 | None:intergenic | 15.0% |
| !!! | AATTTTTTACTTAACTTTGT+TGG | + | chr6_1:49496483-49496502 | None:intergenic | 15.0% |
| !! | ATTAGTTAAATATGAATTTC+AGG | - | chr6_1:49496516-49496535 | Msa0887550:intron | 15.0% |
| !! | TTAGTTAAATATGAATTTCA+GGG | - | chr6_1:49496517-49496536 | Msa0887550:intron | 15.0% |
| !!! | TCTTTTAATTTAGTTCAATT+AGG | - | chr6_1:49496913-49496932 | Msa0887550:intron | 15.0% |
| !!! | AAATATGAATCGAAAATTTT+AGG | - | chr6_1:49496946-49496965 | Msa0887550:intron | 15.0% |
| !!! | CACTTTTTTAATATTTAACT+AGG | + | chr6_1:49497020-49497039 | None:intergenic | 15.0% |
| !! | TATTATACCAACAAAATATT+AGG | - | chr6_1:49497065-49497084 | Msa0887550:CDS | 15.0% |
| !! | GTTAATAATTATTGTACAAA+TGG | + | chr6_1:49498062-49498081 | None:intergenic | 15.0% |
| !! | TCAACAAAATGTAATATATT+TGG | - | chr6_1:49498152-49498171 | Msa0887550:CDS | 15.0% |
| !!! | CTGTTTATTTAAGATTTTCA+TGG | - | chr6_1:49494310-49494329 | Msa0887550:three_prime_UTR | 20.0% |
| !! | CTTTCTCTTATATATAGAAT+TGG | + | chr6_1:49494379-49494398 | None:intergenic | 20.0% |
| !! | TCTATATATAAGAGAAAGTT+TGG | - | chr6_1:49494381-49494400 | Msa0887550:three_prime_UTR | 20.0% |
| !! | CTATATATAAGAGAAAGTTT+GGG | - | chr6_1:49494382-49494401 | Msa0887550:three_prime_UTR | 20.0% |
| !!! | TTATTTTTTCATATGCACAT+TGG | - | chr6_1:49494505-49494524 | Msa0887550:CDS | 20.0% |
| !!! | ATTAATTGTTTTATTCCTCT+AGG | - | chr6_1:49494743-49494762 | Msa0887550:intron | 20.0% |
| !! | TATCTTAACAACAAAAAAAG+TGG | + | chr6_1:49494773-49494792 | None:intergenic | 20.0% |
| !! | AAAATACACAAATAGAAGAT+TGG | - | chr6_1:49494813-49494832 | Msa0887550:intron | 20.0% |
| !! | ACACTTGATAAAAAAAATAG+AGG | + | chr6_1:49494909-49494928 | None:intergenic | 20.0% |
| !! | GTATATGTTTAAATTATCAG+TGG | + | chr6_1:49495013-49495032 | None:intergenic | 20.0% |
| !!! | TCTTTTAGAAGTCTTTTTTT+AGG | - | chr6_1:49495200-49495219 | Msa0887550:intron | 20.0% |
| !!! | CTTTTAGAAGTCTTTTTTTA+GGG | - | chr6_1:49495201-49495220 | Msa0887550:intron | 20.0% |
| !!! | TTTTAGAAGTCTTTTTTTAG+GGG | - | chr6_1:49495202-49495221 | Msa0887550:intron | 20.0% |
| !!! | GTGTGTACATTATTAATTTT+GGG | - | chr6_1:49495257-49495276 | Msa0887550:intron | 20.0% |
| !!! | ACTAGGTATATTTAATTTTC+AGG | - | chr6_1:49495291-49495310 | Msa0887550:intron | 20.0% |
| !!! | ATAGTTTAGAACTTGTAATA+GGG | + | chr6_1:49495408-49495427 | None:intergenic | 20.0% |
| !! | TTTGTTGACCATAAAATTAT+TGG | + | chr6_1:49495431-49495450 | None:intergenic | 20.0% |
| !! | AAAATTAGTTAAAGCAAACA+AGG | + | chr6_1:49495491-49495510 | None:intergenic | 20.0% |
| !! | CAATGAAAACCATAAATTAA+GGG | + | chr6_1:49495843-49495862 | None:intergenic | 20.0% |
| !! | AATTTATCATGGGAAAATTT+AGG | + | chr6_1:49496272-49496291 | None:intergenic | 20.0% |
| !!! | AAATTTTCCCATGATAAATT+TGG | - | chr6_1:49496272-49496291 | Msa0887550:intron | 20.0% |
| !!! | TTTTTTACTTAACTTTGTTG+GGG | + | chr6_1:49496481-49496500 | None:intergenic | 20.0% |
| !! | TAGTTAAATATGAATTTCAG+GGG | - | chr6_1:49496518-49496537 | Msa0887550:intron | 20.0% |
| !!! | TACATTTTTTGGTTTATCTT+AGG | - | chr6_1:49496782-49496801 | Msa0887550:intron | 20.0% |
| !! | AAACAGAAAAAACACTAAAT+AGG | + | chr6_1:49496811-49496830 | None:intergenic | 20.0% |
| !! | TATTACATTGCACAATTATT+AGG | + | chr6_1:49497301-49497320 | None:intergenic | 20.0% |
| !!! | TTAGGTATTTGATTATGTTT+TGG | - | chr6_1:49497565-49497584 | Msa0887550:intron | 20.0% |
| !!! | TAGGTATTTGATTATGTTTT+GGG | - | chr6_1:49497566-49497585 | Msa0887550:intron | 20.0% |
| !! | AATAAAAGACAAGAAAATCA+TGG | + | chr6_1:49497608-49497627 | None:intergenic | 20.0% |
| !! | ATTGAATATATTTCTTTAGG+TGG | - | chr6_1:49497749-49497768 | Msa0887550:intron | 20.0% |
| !!! | GCATTTTTATAAGAAACAAA+TGG | - | chr6_1:49498128-49498147 | Msa0887550:intron | 20.0% |
| ! | TTATTCTCTTGAAGATTTGT+TGG | + | chr6_1:49494162-49494181 | None:intergenic | 25.0% |
| !!! | TTTAAGATTTTCATGGCAAA+TGG | - | chr6_1:49494317-49494336 | Msa0887550:three_prime_UTR | 25.0% |
| ! | AAAAACTATTACATCGGATA+CGG | + | chr6_1:49494474-49494493 | None:intergenic | 25.0% |
| !! | TGCTAATATGAATCTGAAAT+TGG | - | chr6_1:49494538-49494557 | Msa0887550:intron | 25.0% |
| !! | GCTAATATGAATCTGAAATT+GGG | - | chr6_1:49494539-49494558 | Msa0887550:intron | 25.0% |
| ! | ATGTTTAAATTATCAGTGGT+GGG | + | chr6_1:49495009-49495028 | None:intergenic | 25.0% |
| ! | TATGTTTAAATTATCAGTGG+TGG | + | chr6_1:49495010-49495029 | None:intergenic | 25.0% |
| !! | GGTGTGTACATTATTAATTT+TGG | - | chr6_1:49495256-49495275 | Msa0887550:intron | 25.0% |
| !!! | AGGTATATTTAATTTTCAGG+TGG | - | chr6_1:49495294-49495313 | Msa0887550:intron | 25.0% |
| !!! | GGTATATTTAATTTTCAGGT+GGG | - | chr6_1:49495295-49495314 | Msa0887550:intron | 25.0% |
| ! | TTGTAATAGGGGAAATTAAT+TGG | + | chr6_1:49495396-49495415 | None:intergenic | 25.0% |
| !! | TAGTTTAGAACTTGTAATAG+GGG | + | chr6_1:49495407-49495426 | None:intergenic | 25.0% |
| !! | GATAGTTTAGAACTTGTAAT+AGG | + | chr6_1:49495409-49495428 | None:intergenic | 25.0% |
| !!! | TTTGAATTTTGAAGCATGTT+TGG | + | chr6_1:49495468-49495487 | None:intergenic | 25.0% |
| ! | ATCAAATAGTTCATAACCAT+TGG | + | chr6_1:49495615-49495634 | None:intergenic | 25.0% |
| ! | CCAATGAAAACCATAAATTA+AGG | + | chr6_1:49495844-49495863 | None:intergenic | 25.0% |
| !! | CCTTAATTTATGGTTTTCAT+TGG | - | chr6_1:49495841-49495860 | Msa0887550:intron | 25.0% |
| ! | AAACAAAAAAGAAAGAGTCA+CGG | + | chr6_1:49495890-49495909 | None:intergenic | 25.0% |
| ! | GTTAAAGAAGCAAATGTAAT+AGG | + | chr6_1:49496220-49496239 | None:intergenic | 25.0% |
| ! | GTATTGTCCAAATTTATCAT+GGG | + | chr6_1:49496282-49496301 | None:intergenic | 25.0% |
| ! | AATTTGGACAATACCTAAAT+AGG | - | chr6_1:49496288-49496307 | Msa0887550:intron | 25.0% |
| ! | AAAAATAACATGGCCTATTT+AGG | + | chr6_1:49496304-49496323 | None:intergenic | 25.0% |
| !! | GATCTTTACTCTTTTTCTAT+AGG | - | chr6_1:49496443-49496462 | Msa0887550:intron | 25.0% |
| ! | AGTTAAATATGAATTTCAGG+GGG | - | chr6_1:49496519-49496538 | Msa0887550:intron | 25.0% |
| !!! | TGTCATTTAATTTGCATGTT+TGG | - | chr6_1:49496755-49496774 | Msa0887550:intron | 25.0% |
| !!! | TTTTTTCTGTTTCGATTAGT+TGG | - | chr6_1:49496819-49496838 | Msa0887550:intron | 25.0% |
| ! | AAAAATGAAAAGTCGAACAA+AGG | + | chr6_1:49496860-49496879 | None:intergenic | 25.0% |
| ! | GTAACGTATAACTAAATGTT+AGG | - | chr6_1:49497042-49497061 | Msa0887550:intron | 25.0% |
| ! | ATACCAACAAAATATTAGGT+AGG | - | chr6_1:49497069-49497088 | Msa0887550:CDS | 25.0% |
| ! | ACTCGTACTTTAGATTATTA+AGG | + | chr6_1:49497138-49497157 | None:intergenic | 25.0% |
| ! | TAGGTTAAGATAAATGAAAG+AGG | + | chr6_1:49497282-49497301 | None:intergenic | 25.0% |
| ! | GATAAGGATAATTACTTTGT+GGG | + | chr6_1:49497504-49497523 | None:intergenic | 25.0% |
| ! | TGATAAGGATAATTACTTTG+TGG | + | chr6_1:49497505-49497524 | None:intergenic | 25.0% |
| ! | GTGATAAGAATGTTATGATA+AGG | + | chr6_1:49497520-49497539 | None:intergenic | 25.0% |
| !! | AGGTATTTGATTATGTTTTG+GGG | - | chr6_1:49497567-49497586 | Msa0887550:intron | 25.0% |
| ! | ATACAAGAATACATTACCTT+TGG | + | chr6_1:49497686-49497705 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAAAAATGCC+AGG | + | chr6_1:49498127-49498146 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | + | chr6_1:49498194-49498213 | None:intergenic | 25.0% |
| ! | CCTTTATATAAGAGACAAAT+TGG | + | chr6_1:49498217-49498236 | None:intergenic | 25.0% |
| ! | CCAATTTGTCTCTTATATAA+AGG | - | chr6_1:49498214-49498233 | Msa0887550:CDS | 25.0% |
| ! | TTGTCTCTTATATAAAGGAT+CGG | - | chr6_1:49498219-49498238 | Msa0887550:CDS | 25.0% |
| ! | ATTTGAGAAATATGAAAGAG+CGG | - | chr6_1:49498249-49498268 | Msa0887550:CDS | 25.0% |
| !!! | TCCCATAATTTTAATTTCAG+CGG | - | chr6_1:49498296-49498315 | Msa0887550:CDS | 25.0% |
| ! | ACCGCTGAAATTAAAATTAT+GGG | + | chr6_1:49498300-49498319 | None:intergenic | 25.0% |
| ! | AACCGCTGAAATTAAAATTA+TGG | + | chr6_1:49498301-49498320 | None:intergenic | 25.0% |
| !!! | ATAATTTTAATTTCAGCGGT+TGG | - | chr6_1:49498300-49498319 | Msa0887550:CDS | 25.0% |
| !!! | ATTTTTGGTGAGATAACTTG+AGG | + | chr6_1:49494195-49494214 | None:intergenic | 30.0% |
| TCAAGTTATCTCACCAAAAA+TGG | - | chr6_1:49494194-49494213 | Msa0887550:three_prime_UTR | 30.0% | |
| GAATTGGAGCGAAAAATTTA+AGG | + | chr6_1:49494363-49494382 | None:intergenic | 30.0% | |
| AAAGTTTGGGCAATGATATT+CGG | - | chr6_1:49494395-49494414 | Msa0887550:three_prime_UTR | 30.0% | |
| ATACGGTATAGGAGAAAATT+TGG | + | chr6_1:49494457-49494476 | None:intergenic | 30.0% | |
| ! | TATGAATCTGAAATTGGGTT+TGG | - | chr6_1:49494544-49494563 | Msa0887550:intron | 30.0% |
| !! | AAATTGGGTTTGGTTTGTTT+AGG | - | chr6_1:49494554-49494573 | Msa0887550:intron | 30.0% |
| !! | AATTGGGTTTGGTTTGTTTA+GGG | - | chr6_1:49494555-49494574 | Msa0887550:intron | 30.0% |
| AAAAAAAGTGGAAATCCTAG+AGG | + | chr6_1:49494761-49494780 | None:intergenic | 30.0% | |
| ATACACAAATAGAAGATTGG+TGG | - | chr6_1:49494816-49494835 | Msa0887550:intron | 30.0% | |
| TCAAATGAGATAAACACAAG+TGG | + | chr6_1:49494844-49494863 | None:intergenic | 30.0% | |
| TTTGGGCAATAAATTCAACT+AGG | - | chr6_1:49495274-49495293 | Msa0887550:intron | 30.0% | |
| !!! | ATTTAATTTTCAGGTGGGAA+TGG | - | chr6_1:49495300-49495319 | Msa0887550:intron | 30.0% |
| GTTATGAACTATTTGATACG+TGG | - | chr6_1:49495618-49495637 | Msa0887550:intron | 30.0% | |
| TGTGAAAGAAACCAAAGTTA+AGG | + | chr6_1:49495780-49495799 | None:intergenic | 30.0% | |
| ! | AACTTTGGTTTCTTTCACAA+AGG | - | chr6_1:49495781-49495800 | Msa0887550:intron | 30.0% |
| AACAAAAAAGAAAGAGTCAC+GGG | + | chr6_1:49495889-49495908 | None:intergenic | 30.0% | |
| ! | TTTAAAGTTCACGAACAACT+CGG | + | chr6_1:49495966-49495985 | None:intergenic | 30.0% |
| ACACTTATTAGCATGATCTA+AGG | + | chr6_1:49496106-49496125 | None:intergenic | 30.0% | |
| ! | CATGCTAATAAGTGTTTCTA+AGG | - | chr6_1:49496111-49496130 | Msa0887550:intron | 30.0% |
| TTACATTTGCTTCTTTAACC+AGG | - | chr6_1:49496221-49496240 | Msa0887550:intron | 30.0% | |
| TACATTTGCTTCTTTAACCA+GGG | - | chr6_1:49496222-49496241 | Msa0887550:intron | 30.0% | |
| GGTATTGTCCAAATTTATCA+TGG | + | chr6_1:49496283-49496302 | None:intergenic | 30.0% | |
| TGAAAATGGAAGTGAAAACA+TGG | - | chr6_1:49496666-49496685 | Msa0887550:CDS | 30.0% | |
| GAAAATGGAAGTGAAAACAT+GGG | - | chr6_1:49496667-49496686 | Msa0887550:CDS | 30.0% | |
| !!! | AGAAGTGTTGGTTTTTTTGT+TGG | - | chr6_1:49496709-49496728 | Msa0887550:CDS | 30.0% |
| !! | CATTTAATTTGCATGTTTGG+TGG | - | chr6_1:49496758-49496777 | Msa0887550:intron | 30.0% |
| !!! | TGTTTGGTGGATACATTTTT+TGG | - | chr6_1:49496771-49496790 | Msa0887550:intron | 30.0% |
| ! | ATGAATCGAAAATTTTAGGC+AGG | - | chr6_1:49496950-49496969 | Msa0887550:intron | 30.0% |
| !!! | TTTTTCAGGTAAGAAGTTGT+CGG | - | chr6_1:49496983-49497002 | Msa0887550:intron | 30.0% |
| ! | GTTCCTACCTAATATTTTGT+TGG | + | chr6_1:49497075-49497094 | None:intergenic | 30.0% |
| GGATCTTAACTTCAATTACT+AGG | + | chr6_1:49497261-49497280 | None:intergenic | 30.0% | |
| !!! | TGATTATGTTTTGGGGTATA+AGG | - | chr6_1:49497574-49497593 | Msa0887550:intron | 30.0% |
| ACCATTCAGACAAATTTGAT+GGG | - | chr6_1:49497636-49497655 | Msa0887550:intron | 30.0% | |
| AGCACATAAGAAAGATACAA+AGG | + | chr6_1:49497721-49497740 | None:intergenic | 30.0% | |
| ACTATTGATGTGACAAAGAT+AGG | - | chr6_1:49498080-49498099 | Msa0887550:intron | 30.0% | |
| ATAAAATAATTACTCCCTCC+TGG | - | chr6_1:49498106-49498125 | Msa0887550:intron | 30.0% | |
| TTCTTATAAAAATGCCAGGA+GGG | + | chr6_1:49498123-49498142 | None:intergenic | 30.0% | |
| TTTCTTATAAAAATGCCAGG+AGG | + | chr6_1:49498124-49498143 | None:intergenic | 30.0% | |
| ACCAAAAATGGCAGAGAAAT+TGG | - | chr6_1:49494206-49494225 | Msa0887550:three_prime_UTR | 35.0% | |
| ! | TAGCCTTGGTATAACATCTA+TGG | - | chr6_1:49494278-49494297 | Msa0887550:three_prime_UTR | 35.0% |
| ! | AAGATTTTCATGGCAAATGG+AGG | - | chr6_1:49494320-49494339 | Msa0887550:three_prime_UTR | 35.0% |
| TATTACATCGGATACGGTAT+AGG | + | chr6_1:49494468-49494487 | None:intergenic | 35.0% | |
| !! | ATTGGGTTTGGTTTGTTTAG+GGG | - | chr6_1:49494556-49494575 | Msa0887550:intron | 35.0% |
| ! | ATTCCTTGGTCTGAAATGTT+TGG | - | chr6_1:49494588-49494607 | Msa0887550:intron | 35.0% |
| TGGTTTCTTTCACAAAGGAT+TGG | - | chr6_1:49495786-49495805 | Msa0887550:intron | 35.0% | |
| GGTATGTCTCCCTTAATTTA+TGG | - | chr6_1:49495831-49495850 | Msa0887550:intron | 35.0% | |
| ! | TTATTAGCATGATCTAAGGC+TGG | + | chr6_1:49496102-49496121 | None:intergenic | 35.0% |
| TGAATTTCAGGGGGTTTAAT+AGG | - | chr6_1:49496528-49496547 | Msa0887550:intron | 35.0% | |
| !! | GTTGGCTTCAAGCTAAATTT+TGG | - | chr6_1:49496727-49496746 | Msa0887550:CDS | 35.0% |
| ATTTCATGCACACTTTGTGA+TGG | - | chr6_1:49496882-49496901 | Msa0887550:intron | 35.0% | |
| GTCTTGGAATTACGGTATTT+GGG | - | chr6_1:49497384-49497403 | Msa0887550:intron | 35.0% | |
| CACCATTCAGACAAATTTGA+TGG | - | chr6_1:49497635-49497654 | Msa0887550:intron | 35.0% | |
| CCATTCAGACAAATTTGATG+GGG | - | chr6_1:49497637-49497656 | Msa0887550:intron | 35.0% | |
| ! | TAACCTATGATAACTTGTGC+AGG | - | chr6_1:49497873-49497892 | Msa0887550:intron | 35.0% |
| AGCTAGAGAAAGAGATAAGT+AGG | - | chr6_1:49497923-49497942 | Msa0887550:intron | 35.0% | |
| TAGAGAAAGAGATAAGTAGG+AGG | - | chr6_1:49497926-49497945 | Msa0887550:intron | 35.0% | |
| GAAATATGAAAGAGCGGAAA+TGG | - | chr6_1:49498255-49498274 | Msa0887550:CDS | 35.0% | |
| !!! | TTTTAATTTCAGCGGTTGGA+TGG | - | chr6_1:49498304-49498323 | Msa0887550:CDS | 35.0% |
| TCCAAAACGTGACACACAAA+TGG | - | chr6_1:49494119-49494138 | Msa0887550:three_prime_UTR | 40.0% | |
| ! | TCCATTTGTGTGTCACGTTT+TGG | + | chr6_1:49494123-49494142 | None:intergenic | 40.0% |
| !!! | GCCAATTTCTCTGCCATTTT+TGG | + | chr6_1:49494210-49494229 | None:intergenic | 40.0% |
| AAATGGCAGAGAAATTGGCT+AGG | - | chr6_1:49494211-49494230 | Msa0887550:three_prime_UTR | 40.0% | |
| CAGCCATAGATGTTATACCA+AGG | + | chr6_1:49494284-49494303 | None:intergenic | 40.0% | |
| AATGGAGGTAAGTAGTGTGA+TGG | - | chr6_1:49494335-49494354 | Msa0887550:three_prime_UTR | 40.0% | |
| GTACCAAACATTTCAGACCA+AGG | + | chr6_1:49494594-49494613 | None:intergenic | 40.0% | |
| TGGTACATTTGCTCTATCAG+TGG | - | chr6_1:49494608-49494627 | Msa0887550:intron | 40.0% | |
| GGTACATTTGCTCTATCAGT+GGG | - | chr6_1:49494609-49494628 | Msa0887550:intron | 40.0% | |
| ! | GGTGGGATTGTCAAGAATTT+TGG | + | chr6_1:49494992-49495011 | None:intergenic | 40.0% |
| !!! | AATGGAGTTTTGGGCTAGAT+GGG | - | chr6_1:49495318-49495337 | Msa0887550:intron | 40.0% |
| TCCTTCTCTTGCTCTATGAT+GGG | + | chr6_1:49495701-49495720 | None:intergenic | 40.0% | |
| CGACTCGATAAGAATTGACT+TGG | + | chr6_1:49496045-49496064 | None:intergenic | 40.0% | |
| ATTTCAGGGGGTTTAATAGG+TGG | - | chr6_1:49496531-49496550 | Msa0887550:intron | 40.0% | |
| TATGGTGTACCGTCTATATG+CGG | - | chr6_1:49496555-49496574 | Msa0887550:intron | 40.0% | |
| CAAATAGTGCCGCATATAGA+CGG | + | chr6_1:49496567-49496586 | None:intergenic | 40.0% | |
| ! | AACATGCATCGAAGAAGTGT+TGG | - | chr6_1:49496697-49496716 | Msa0887550:CDS | 40.0% |
| !!! | CAGGAACTTGTCACTTTTTC+AGG | - | chr6_1:49496969-49496988 | Msa0887550:intron | 40.0% |
| GGTCTTGGAATTACGGTATT+TGG | - | chr6_1:49497383-49497402 | Msa0887550:intron | 40.0% | |
| TGGAATTACGGTATTTGGGA+TGG | - | chr6_1:49497388-49497407 | Msa0887550:intron | 40.0% | |
| ACCATCGTGTACAAACATGT+AGG | + | chr6_1:49497414-49497433 | None:intergenic | 40.0% | |
| CATGTTTGTACACGATGGTT+TGG | - | chr6_1:49497415-49497434 | Msa0887550:intron | 40.0% | |
| !! | TACACGATGGTTTGGTTCAT+AGG | - | chr6_1:49497423-49497442 | Msa0887550:intron | 40.0% |
| GTTCATAGGAGATTCTCAGT+GGG | - | chr6_1:49497437-49497456 | Msa0887550:intron | 40.0% | |
| AAATAGGGCACATTGGCAAT+GGG | + | chr6_1:49497464-49497483 | None:intergenic | 40.0% | |
| CAATGTGCCCTATTTCAGAA+GGG | - | chr6_1:49497469-49497488 | Msa0887550:intron | 40.0% | |
| CCCCATCAAATTTGTCTGAA+TGG | + | chr6_1:49497640-49497659 | None:intergenic | 40.0% | |
| ! | AAATTTGATGGGGTGCCATA+TGG | - | chr6_1:49497647-49497666 | Msa0887550:intron | 40.0% |
| ! | AATTTGATGGGGTGCCATAT+GGG | - | chr6_1:49497648-49497667 | Msa0887550:intron | 40.0% |
| GTTCCTGCACAAGTTATCAT+AGG | + | chr6_1:49497879-49497898 | None:intergenic | 40.0% | |
| ! | ATAACTTGTGCAGGAACTTG+AGG | - | chr6_1:49497882-49497901 | Msa0887550:intron | 40.0% |
| ! | TGAAAGAGCGGAAATGGATT+TGG | - | chr6_1:49498261-49498280 | Msa0887550:CDS | 40.0% |
| !! | GTTTGGTTTGTTTAGGGGAG+TGG | - | chr6_1:49494561-49494580 | Msa0887550:intron | 45.0% |
| ! | TTCAGGTGGGAATGGAGTTT+TGG | - | chr6_1:49495308-49495327 | Msa0887550:intron | 45.0% |
| ! | TCAGGTGGGAATGGAGTTTT+GGG | - | chr6_1:49495309-49495328 | Msa0887550:intron | 45.0% |
| !!! | GAATGGAGTTTTGGGCTAGA+TGG | - | chr6_1:49495317-49495336 | Msa0887550:intron | 45.0% |
| ATGGGTCTTGCTTCAACTTG+TGG | + | chr6_1:49495540-49495559 | None:intergenic | 45.0% | |
| TCCCATCATAGAGCAAGAGA+AGG | - | chr6_1:49495697-49495716 | Msa0887550:intron | 45.0% | |
| CTCCTTCTCTTGCTCTATGA+TGG | + | chr6_1:49495702-49495721 | None:intergenic | 45.0% | |
| AAGTTAAGGAGAGCGATAGC+AGG | + | chr6_1:49495766-49495785 | None:intergenic | 45.0% | |
| GCTATCGCTCTCCTTAACTT+TGG | - | chr6_1:49495766-49495785 | Msa0887550:intron | 45.0% | |
| !! | TTTCACAAAGGATTGGTCCC+TGG | - | chr6_1:49495793-49495812 | Msa0887550:intron | 45.0% |
| !! | GTTTTCATTGGCTACCCTTG+CGG | - | chr6_1:49495853-49495872 | Msa0887550:intron | 45.0% |
| AACAAGTGTCATAAGAGCCC+TGG | + | chr6_1:49496242-49496261 | None:intergenic | 45.0% | |
| GGGGGTTTAATAGGTGGTTA+TGG | - | chr6_1:49496537-49496556 | Msa0887550:intron | 45.0% | |
| AAGACCCTGCTCGTAAACAA+GGG | + | chr6_1:49497369-49497388 | None:intergenic | 45.0% | |
| GCCTACATGTTTGTACACGA+TGG | - | chr6_1:49497410-49497429 | Msa0887550:intron | 45.0% | |
| GGTTCATAGGAGATTCTCAG+TGG | - | chr6_1:49497436-49497455 | Msa0887550:intron | 45.0% | |
| GAAATAGGGCACATTGGCAA+TGG | + | chr6_1:49497465-49497484 | None:intergenic | 45.0% | |
| !! | CCTTCTGAAATAGGGCACAT+TGG | + | chr6_1:49497471-49497490 | None:intergenic | 45.0% |
| CCAATGTGCCCTATTTCAGA+AGG | - | chr6_1:49497468-49497487 | Msa0887550:intron | 45.0% | |
| !! | GCAGCTACCCTTCTGAAATA+GGG | + | chr6_1:49497479-49497498 | None:intergenic | 45.0% |
| !! | TGCAGCTACCCTTCTGAAAT+AGG | + | chr6_1:49497480-49497499 | None:intergenic | 45.0% |
| !!! | GTGCCATATGGGCTGTTTTT+GGG | - | chr6_1:49497659-49497678 | Msa0887550:intron | 45.0% |
| !! | ATTATCAAAATAAAAAAAAA+TGG | + | chr6_1:49494657-49494676 | None:intergenic | 5.0% |
| !!! | ATTTAACTTTTTTTTTTAAT+CGG | + | chr6_1:49496645-49496664 | None:intergenic | 5.0% |
| !!! | TTTTTTGATAAATTATTATT+AGG | - | chr6_1:49497547-49497566 | Msa0887550:intron | 5.0% |
| GCAGCTGTTATGTCTAGCCT+TGG | - | chr6_1:49494264-49494283 | Msa0887550:three_prime_UTR | 50.0% | |
| AGGGGAGTGGAGAAATTCCT+TGG | - | chr6_1:49494574-49494593 | Msa0887550:intron | 50.0% | |
| CTCTTTGGCATGCTTCCTTG+TGG | - | chr6_1:49495350-49495369 | Msa0887550:intron | 50.0% | |
| TTCCTTGTGGCACATGCATG+AGG | - | chr6_1:49495363-49495382 | Msa0887550:intron | 50.0% | |
| TACCTCATGCATGTGCCACA+AGG | + | chr6_1:49495368-49495387 | None:intergenic | 50.0% | |
| ! | TTGGTCCCTGGTCTTTGCTT+TGG | - | chr6_1:49495805-49495824 | Msa0887550:intron | 50.0% |
| ATTGGCTACCCTTGCGGTAA+AGG | - | chr6_1:49495859-49495878 | Msa0887550:intron | 50.0% | |
| TTGGCTACCCTTGCGGTAAA+GGG | - | chr6_1:49495860-49495879 | Msa0887550:intron | 50.0% | |
| ! | TGTCACCCTTGTTTACGAGC+AGG | - | chr6_1:49497361-49497380 | Msa0887550:intron | 50.0% |
| ! | GTCACCCTTGTTTACGAGCA+GGG | - | chr6_1:49497362-49497381 | Msa0887550:intron | 50.0% |
| CAAGACCCTGCTCGTAAACA+AGG | + | chr6_1:49497370-49497389 | None:intergenic | 50.0% | |
| CTTGTTTACGAGCAGGGTCT+TGG | - | chr6_1:49497368-49497387 | Msa0887550:intron | 50.0% | |
| CGAGCAGGGTCTTGGAATTA+CGG | - | chr6_1:49497376-49497395 | Msa0887550:intron | 50.0% | |
| !! | GGTGCCATATGGGCTGTTTT+TGG | - | chr6_1:49497658-49497677 | Msa0887550:intron | 50.0% |
| GGTCCCAAAAACAGCCCATA+TGG | + | chr6_1:49497665-49497684 | None:intergenic | 50.0% | |
| !!! | TGGGCTGTTTTTGGGACCAA+AGG | - | chr6_1:49497667-49497686 | Msa0887550:intron | 50.0% |
| TGTGCAGGAACTTGAGGAAG+TGG | - | chr6_1:49497888-49497907 | Msa0887550:intron | 50.0% | |
| GTGCAGGAACTTGAGGAAGT+GGG | - | chr6_1:49497889-49497908 | Msa0887550:intron | 50.0% | |
| AGGAACTTGAGGAAGTGGGA+GGG | - | chr6_1:49497893-49497912 | Msa0887550:intron | 50.0% | |
| ! | TTGGGCTAGATGGGCTCACA+AGG | - | chr6_1:49495327-49495346 | Msa0887550:intron | 55.0% |
| ! | GATGGGCTCACAAGGCTCTT+TGG | - | chr6_1:49495335-49495354 | Msa0887550:intron | 55.0% |
| CCGCACCAAAGCAAAGACCA+GGG | + | chr6_1:49495813-49495832 | None:intergenic | 55.0% | |
| ! | CCCTGGTCTTTGCTTTGGTG+CGG | - | chr6_1:49495810-49495829 | Msa0887550:intron | 55.0% |
| ACCGCACCAAAGCAAAGACC+AGG | + | chr6_1:49495814-49495833 | None:intergenic | 55.0% | |
| CGGGTAACCCTTTACCGCAA+GGG | + | chr6_1:49495870-49495889 | None:intergenic | 55.0% | |
| ACGGGTAACCCTTTACCGCA+AGG | + | chr6_1:49495871-49495890 | None:intergenic | 55.0% | |
| CGTTCATACCCTGCGTCTTG+CGG | - | chr6_1:49496597-49496616 | Msa0887550:intron | 55.0% | |
| GTTCATACCCTGCGTCTTGC+GGG | - | chr6_1:49496598-49496617 | Msa0887550:intron | 55.0% | |
| TTCATACCCTGCGTCTTGCG+GGG | - | chr6_1:49496599-49496618 | Msa0887550:intron | 55.0% | |
| CAGGAACTTGAGGAAGTGGG+AGG | - | chr6_1:49497892-49497911 | Msa0887550:intron | 55.0% | |
| CGTCATCCCCGCAAGACGCA+GGG | + | chr6_1:49496608-49496627 | None:intergenic | 65.0% | |
| ACGTCATCCCCGCAAGACGC+AGG | + | chr6_1:49496609-49496628 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 49494111 | 49498333 | 49494111 | ID=Msa0887550;Name=Msa0887550 |
| chr6_1 | mRNA | 49494111 | 49498333 | 49494111 | ID=Msa0887550-mRNA-1;Parent=Msa0887550;Name=Msa0887550-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.83|0.85|1|1|1|7|361|243 |
| chr6_1 | exon | 49494111 | 49494549 | 49494111 | ID=Msa0887550-mRNA-1:exon:10243;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49494756 | 49494812 | 49494756 | ID=Msa0887550-mRNA-1:exon:10242;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49494936 | 49495061 | 49494936 | ID=Msa0887550-mRNA-1:exon:10241;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49496613 | 49496747 | 49496613 | ID=Msa0887550-mRNA-1:exon:10240;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49497060 | 49497131 | 49497060 | ID=Msa0887550-mRNA-1:exon:10239;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49497806 | 49497868 | 49497806 | ID=Msa0887550-mRNA-1:exon:10238;Parent=Msa0887550-mRNA-1 |
| chr6_1 | exon | 49498133 | 49498333 | 49498133 | ID=Msa0887550-mRNA-1:exon:10237;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49498133 | 49498333 | 49498133 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49497806 | 49497868 | 49497806 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49497060 | 49497131 | 49497060 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49496613 | 49496747 | 49496613 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49494936 | 49495061 | 49494936 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49494756 | 49494812 | 49494756 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | CDS | 49494472 | 49494549 | 49494472 | ID=Msa0887550-mRNA-1:cds;Parent=Msa0887550-mRNA-1 |
| chr6_1 | three_prime_UTR | 49494111 | 49494471 | 49494111 | ID=Msa0887550-mRNA-1:three_prime_utr;Parent=Msa0887550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
