AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913900 MtrunA17_Chr6g0468841 96.835 316 7 1 1 316 1 313 0.0 633
Msa0913900 MtrunA17_Chr1g0202661 69.279 319 72 4 1 316 1 296 1.95e-148 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913900 AT4G25700.1 63.722 317 98 4 1 316 1 301 5.68e-145 411
Msa0913900 AT5G52570.1 63.492 315 96 6 1 314 1 297 1.94e-131 376
Msa0913900 AT4G25700.2 56.710 231 83 4 1 230 1 215 1.17e-86 259
Msa0913900 AT4G25700.3 56.710 231 83 4 1 230 1 215 1.17e-86 259
Msa0913900 AT5G52570.2 84.884 86 13 0 229 314 143 228 2.07e-39 139
Msa0913900 AT5G52570.2 40.761 184 82 8 1 177 1 164 3.27e-31 117

Find 76 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTGGAATTACGGTATT+TGG 0.125275 6_2:-25930965 Msa0913900:CDS
AGGTTTGTAGTAACGGTTTA+AGG 0.141677 6_2:+25934380 None:intergenic
CTTTGATGGAAACATCTTAA+AGG 0.219951 6_2:+25934309 None:intergenic
TTCAGGTGGGAATGGAGTTT+TGG 0.253688 6_2:-25933044 Msa0913900:intron
TCCATTTGTGTGTCACGTTT+TGG 0.270912 6_2:+25934228 None:intergenic
TGCAGCTACCCTTCTGAAAT+AGG 0.278817 6_2:+25930871 None:intergenic
CGAGCAGGGTCTTGGAATTA+CGG 0.328060 6_2:-25930972 Msa0913900:intron
CTTATTTACGAGCAGGGTCT+TGG 0.341393 6_2:-25930980 Msa0913900:intron
CACCATTCAGACAAATTTGA+TGG 0.342320 6_2:-25930687 Msa0913900:CDS
TTGGTCCCTGGTCTTTGCTT+TGG 0.354131 6_2:-25932548 Msa0913900:CDS
TTTGATGGAAACATCTTAAA+GGG 0.354826 6_2:+25934310 None:intergenic
TAGCCTTGGTATAACATCTA+TGG 0.360829 6_2:-25934070 Msa0913900:CDS
TAAGGGTTGAATTGTTATAG+TGG 0.369441 6_2:+25934398 None:intergenic
GTCTTGGAATTACGGTATTT+GGG 0.369555 6_2:-25930964 Msa0913900:CDS
GATGGGCTCACAAGGCTCTT+TGG 0.373333 6_2:-25933017 Msa0913900:CDS
GTTTGATTTGTTTAGGGGAG+TGG 0.375206 6_2:-25933787 Msa0913900:intron
AAATTTGATGGGGTGCCATA+TGG 0.380256 6_2:-25930675 Msa0913900:CDS
ATTCCTTGGTCTGAAATGTT+TGG 0.381395 6_2:-25933760 Msa0913900:CDS
TTATTCTCTTGAAGAGTTGT+TGG 0.388038 6_2:+25934189 None:intergenic
CTCCTTCTCTTGCTCTATGA+TGG 0.395882 6_2:+25932654 None:intergenic
AGGATAAGAAATTACTTTGT+GGG 0.395936 6_2:+25930847 None:intergenic
GTTACTAATTATTGTACAAA+TGG 0.404663 6_2:+25930261 None:intergenic
CTTCACACTTTGTGTTCTCA+TGG 0.423292 6_2:-25934256 Msa0913900:CDS
GGTTTGTAGTAACGGTTTAA+GGG 0.425120 6_2:+25934381 None:intergenic
CCCCATCAAATTTGTCTGAA+TGG 0.428774 6_2:+25930685 None:intergenic
TGTGAAAGAAACCAAAGTTA+AGG 0.446407 6_2:+25932576 None:intergenic
TCCAAAACGTGACACACAAA+TGG 0.461950 6_2:-25934229 Msa0913900:CDS
TTTCACAAAGGATTGGTCCC+TGG 0.464655 6_2:-25932560 Msa0913900:CDS
CATGTTTGTACACGATGGAT+TGG 0.465577 6_2:-25930933 Msa0913900:CDS
GGTACATTTGCTCTATCAGT+GGG 0.467717 6_2:-25933739 Msa0913900:CDS
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 6_2:-25930397 Msa0913900:CDS
GCTATCGCTCTCCTTAACTT+TGG 0.478189 6_2:-25932587 Msa0913900:CDS
GTAACAAAGGTTTGTAGTAA+CGG 0.484640 6_2:+25934373 None:intergenic
CTCTTTGGCATGCTTCCTTG+TGG 0.486910 6_2:-25933002 Msa0913900:CDS
AGGGGAGTGGAGAAATTCCT+TGG 0.491493 6_2:-25933774 Msa0913900:CDS
TCCTTCTCTTGCTCTATGAT+GGG 0.494122 6_2:+25932655 None:intergenic
GCAGCTACCCTTCTGAAATA+GGG 0.497308 6_2:+25930872 None:intergenic
GAAATAGGGCACATTGGCAA+TGG 0.497666 6_2:+25930886 None:intergenic
AACTTTGGTTTCTTTCACAA+AGG 0.499713 6_2:-25932572 Msa0913900:CDS
TGGAATTACGGTATTTGGGA+TGG 0.507193 6_2:-25930960 Msa0913900:CDS
ACCATTCAGACAAATTTGAT+GGG 0.516588 6_2:-25930686 Msa0913900:CDS
AAATAGGGCACATTGGCAAT+GGG 0.524918 6_2:+25930887 None:intergenic
TGGTTTCTTTCACAAAGGAT+TGG 0.527316 6_2:-25932567 Msa0913900:CDS
AATTTGATGGGGTGCCATAT+GGG 0.528890 6_2:-25930674 Msa0913900:CDS
GACAAGATAAGTGTTGGTGT+TGG 0.534487 6_2:+25934333 None:intergenic
CCAATGTGCCCTATTTCAGA+AGG 0.537951 6_2:-25930880 Msa0913900:CDS
GCAGCTGTTATGTCTAGCCT+TGG 0.540668 6_2:-25934084 Msa0913900:CDS
CGGAGATGATAAGGTAACAA+AGG 0.545005 6_2:+25934360 None:intergenic
ATATGGTGTGCAGGAACTTG+AGG 0.553825 6_2:-25930438 Msa0913900:intron
AAGTTAAGGAGAGCGATAGC+AGG 0.561167 6_2:+25932590 None:intergenic
ACCGCACCAAAGCAAAGACC+AGG 0.566437 6_2:+25932542 None:intergenic
TGGTACATTTGCTCTATCAG+TGG 0.568666 6_2:-25933740 Msa0913900:CDS
CCCTGGTCTTTGCTTTGGTG+CGG 0.573433 6_2:-25932543 Msa0913900:intron
AAAGGGGACAAGATAAGTGT+TGG 0.574250 6_2:+25934327 None:intergenic
TTGGGCTAGATGGGCTCACA+AGG 0.578030 6_2:-25933025 Msa0913900:CDS
TGTGCAGGAACTTGAGGAAG+TGG 0.583710 6_2:-25930432 Msa0913900:intron
CCATTCAGACAAATTTGATG+GGG 0.589916 6_2:-25930685 Msa0913900:CDS
CCTTCTGAAATAGGGCACAT+TGG 0.591233 6_2:+25930880 None:intergenic
GCCTACATGTTTGTACACGA+TGG 0.593235 6_2:-25930938 Msa0913900:CDS
AAATGGCAGAGAAATTAGCT+AGG 0.608932 6_2:-25934137 Msa0913900:CDS
TCCCATCATAGAGCAAGAGA+AGG 0.610796 6_2:-25932656 Msa0913900:CDS
TTGATGGAAACATCTTAAAG+GGG 0.613022 6_2:+25934311 None:intergenic
TAGAGAAAGAGATAAGTAGG+AGG 0.621312 6_2:-25930394 Msa0913900:CDS
TACCTCATGCATGTGCCACA+AGG 0.625761 6_2:+25932987 None:intergenic
GTTCATAGAAGATTCTCAGT+GGG 0.628115 6_2:-25930911 Msa0913900:CDS
GGGTTGAATTGTTATAGTGG+CGG 0.628849 6_2:+25934401 None:intergenic
CAATGTGCCCTATTTCAGAA+GGG 0.631996 6_2:-25930879 Msa0913900:CDS
GTGCAGGAACTTGAGGAAGT+GGG 0.632829 6_2:-25930431 Msa0913900:intron
CAGGAACTTGAGGAAGTGGG+AGG 0.645926 6_2:-25930428 Msa0913900:CDS
TTCCTTGTGGCACATGCATG+AGG 0.661682 6_2:-25932989 Msa0913900:intron
GTACCAAACATTTCAGACCA+AGG 0.664026 6_2:+25933757 None:intergenic
TCCATCGTGTACAAACATGT+AGG 0.674273 6_2:+25930937 None:intergenic
AGGAACTTGAGGAAGTGGGA+GGG 0.692446 6_2:-25930427 Msa0913900:CDS
GGTTCATAGAAGATTCTCAG+TGG 0.700210 6_2:-25930912 Msa0913900:CDS
CCGCACCAAAGCAAAGACCA+GGG 0.709476 6_2:+25932543 None:intergenic
CAGCCATAGATGTTATACCA+AGG 0.717570 6_2:+25934067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAACTATTACAT+CGG + chr6_2:25930818-25930837 None:intergenic 10.0%
!! AATAAAAAAAAATGGAAAAT+TGG + chr6_2:25930987-25931006 None:intergenic 10.0%
!!! AATTTTTTTTTCTACTTTTA+GGG + chr6_2:25931511-25931530 None:intergenic 10.0%
!! AATTTATCATAGAAAAATTT+AGG + chr6_2:25932608-25932627 None:intergenic 10.0%
!!! AAATTTTTCTATGATAAATT+TGG - chr6_2:25932608-25932627 Msa0913900:CDS 10.0%
!!! AAAAATATTAGAGTTTTATA+TGG - chr6_2:25932697-25932716 Msa0913900:intron 10.0%
!! AGAAAAAATTATAAGAAAAT+TGG - chr6_2:25932753-25932772 Msa0913900:intron 10.0%
!!! ATTTTTTAGTTAATTTTGTT+GGG + chr6_2:25932814-25932833 None:intergenic 10.0%
!!! AATTTTTTAGTTAATTTTGT+TGG + chr6_2:25932815-25932834 None:intergenic 10.0%
!! AAATTAGTTATATATGAAAA+TGG - chr6_2:25932846-25932865 Msa0913900:intron 10.0%
!!! GATGCATTTAATTTTAAATT+TGG + chr6_2:25930760-25930779 None:intergenic 15.0%
!! ACTAATGTATATAAGAAAAT+TGG + chr6_2:25931021-25931040 None:intergenic 15.0%
!!! AATTTTCTTATATACATTAG+TGG - chr6_2:25931020-25931039 Msa0913900:intron 15.0%
!!! TTTTTTATCAAGTGTATTTT+TGG - chr6_2:25931263-25931282 Msa0913900:intron 15.0%
!!! ATTTTTTTTTCTACTTTTAG+GGG + chr6_2:25931510-25931529 None:intergenic 15.0%
!!! GAATTTTTTTTTCTACTTTT+AGG + chr6_2:25931512-25931531 None:intergenic 15.0%
!!! AATTATTTTAATTTGAGAGT+TGG - chr6_2:25931568-25931587 Msa0913900:intron 15.0%
!!! ATTATTTTAATTTGAGAGTT+GGG - chr6_2:25931569-25931588 Msa0913900:intron 15.0%
!! AATCAAACAAATATTCATAT+GGG + chr6_2:25931891-25931910 None:intergenic 15.0%
!! AAATCAAACAAATATTCATA+TGG + chr6_2:25931892-25931911 None:intergenic 15.0%
!!! TATTTGTTTGATTTTGATTT+TGG - chr6_2:25931898-25931917 Msa0913900:intron 15.0%
!! TACAATATTTAAATAACCAA+TGG - chr6_2:25931929-25931948 Msa0913900:intron 15.0%
!!! TTATTTGTTAGAGATTAAAT+TGG - chr6_2:25932726-25932745 Msa0913900:intron 15.0%
!!! TATTTGTTAGAGATTAAATT+GGG - chr6_2:25932727-25932746 Msa0913900:intron 15.0%
!!! TTTTTTAGTTAATTTTGTTG+GGG + chr6_2:25932813-25932832 None:intergenic 15.0%
!!! TGTTTTTTTTTTTGTTTTGA+AGG + chr6_2:25932908-25932927 None:intergenic 15.0%
!!! GAAAAAGTTTTTTTTTTTTG+TGG - chr6_2:25932934-25932953 Msa0913900:intron 15.0%
!!! AAATATGAATCGAAAATTTT+AGG - chr6_2:25933158-25933177 Msa0913900:intron 15.0%
!!! TCACATTTTAATATTTAACT+AGG + chr6_2:25933231-25933250 None:intergenic 15.0%
!!! TATTATACCAACAAAATTTT+AGG - chr6_2:25933275-25933294 Msa0913900:intron 15.0%
!! ATTCTTGATAAGAAAATTAT+TGG + chr6_2:25933396-25933415 None:intergenic 15.0%
!! CAATAGTTATTAATCTATTA+TGG - chr6_2:25933566-25933585 Msa0913900:intron 15.0%
!! AAACATTAAAAAAAATACGA+AGG + chr6_2:25934089-25934108 None:intergenic 15.0%
!!! CTGTTTATTTAAGATTTTCA+TGG - chr6_2:25930648-25930667 Msa0913900:intron 20.0%
!! CTTTCTCTTATATATAGAAT+TGG + chr6_2:25930717-25930736 None:intergenic 20.0%
!! TCTATATATAAGAGAAAGTT+TGG - chr6_2:25930719-25930738 Msa0913900:intron 20.0%
!!! TTATTTTTTCATATGCACAT+TGG - chr6_2:25930843-25930862 Msa0913900:intron 20.0%
!!! ATTAATTGTTTTATTCCTCT+AGG - chr6_2:25931081-25931100 Msa0913900:intron 20.0%
!! TATCTTAACAACAAAAAAAG+TGG + chr6_2:25931111-25931130 None:intergenic 20.0%
!! AAAATACACAAATAGAAGAT+TGG - chr6_2:25931153-25931172 Msa0913900:intron 20.0%
!! GTATATGTTTAAATTATCAG+TGG + chr6_2:25931362-25931381 None:intergenic 20.0%
!!! TCTTTTAGAAGTCTTTTTTT+AGG - chr6_2:25931534-25931553 Msa0913900:intron 20.0%
!!! CTTTTAGAAGTCTTTTTTTA+GGG - chr6_2:25931535-25931554 Msa0913900:intron 20.0%
!!! TTTTAGAAGTCTTTTTTTAG+GGG - chr6_2:25931536-25931555 Msa0913900:intron 20.0%
!!! GTGTGTACATTATTAATTTT+GGG - chr6_2:25931591-25931610 Msa0913900:intron 20.0%
!!! ACTAGGTATATTTAATTTTC+AGG - chr6_2:25931625-25931644 Msa0913900:intron 20.0%
!!! ATAGTTTAGAACTTGTAATA+GGG + chr6_2:25931742-25931761 None:intergenic 20.0%
!!! CTAAACTATCCAATAATTTT+TGG - chr6_2:25931753-25931772 Msa0913900:intron 20.0%
!!! TTTTGTTGACCAAAAATTAT+TGG + chr6_2:25931765-25931784 None:intergenic 20.0%
!! AAAATTAGTTAAAGCAAACA+AGG + chr6_2:25931824-25931843 None:intergenic 20.0%
!! TATTTAAATAACCAATGGTT+AGG - chr6_2:25931934-25931953 Msa0913900:intron 20.0%
!! CAATGAAAACCATAAATTAA+GGG + chr6_2:25932178-25932197 None:intergenic 20.0%
!! AAGTTAAAAACAAAACAGAA+AGG + chr6_2:25932231-25932250 None:intergenic 20.0%
!! ATGATCTAAACATTTATCAT+TGG + chr6_2:25932255-25932274 None:intergenic 20.0%
!!! ACTAATTTGTCTTTACTATA+AGG + chr6_2:25932649-25932668 None:intergenic 20.0%
!! AAACAGAAAAACACTAAAAT+AGG + chr6_2:25933023-25933042 None:intergenic 20.0%
!! AAAAATGAAAAGTTGAACAA+AGG + chr6_2:25933072-25933091 None:intergenic 20.0%
!!! TCTTTTAATCTAGTTCAATT+AGG - chr6_2:25933125-25933144 Msa0913900:intron 20.0%
!! TTCTTATCAAGAATTGAATT+TGG - chr6_2:25933402-25933421 Msa0913900:intron 20.0%
!! TGATAAAGAATGTTATGATA+AGG + chr6_2:25933862-25933881 None:intergenic 20.0%
!! ATTAGGTATTTGATTATGTT+TGG - chr6_2:25933928-25933947 Msa0913900:intron 20.0%
!! TTAGGTATTTGATTATGTTT+GGG - chr6_2:25933929-25933948 Msa0913900:intron 20.0%
!! AATAAAAGACAAGAAAATCA+TGG + chr6_2:25933972-25933991 None:intergenic 20.0%
!! ACAAAATCAATCGAATATAT+TGG - chr6_2:25934112-25934131 Msa0913900:CDS 20.0%
!! TGATGAGTGATAAATAAATA+TGG - chr6_2:25934231-25934250 Msa0913900:CDS 20.0%
! TTTGATGGAAACATCTTAAA+GGG + chr6_2:25930379-25930398 None:intergenic 25.0%
!!! TTTTTAAGGTTGTTCTTTGA+TGG + chr6_2:25930394-25930413 None:intergenic 25.0%
!!! TTTCAACCTTTGTGTTTTTA+AGG + chr6_2:25930408-25930427 None:intergenic 25.0%
!!! TTTAAGATTTTCATGGCAAA+TGG - chr6_2:25930655-25930674 Msa0913900:intron 25.0%
! AAAGTTTGGTCAATGATATT+CGG - chr6_2:25930733-25930752 Msa0913900:intron 25.0%
! AAAAACTATTACATCGGATA+CGG + chr6_2:25930812-25930831 None:intergenic 25.0%
!! TGCTAATATGAATCTGAAAT+TGG - chr6_2:25930876-25930895 Msa0913900:CDS 25.0%
!! GCTAATATGAATCTGAAATT+GGG - chr6_2:25930877-25930896 Msa0913900:CDS 25.0%
!!! AAATTGGGTTTGATTTGTTT+AGG - chr6_2:25930892-25930911 Msa0913900:CDS 25.0%
!!! AATTGGGTTTGATTTGTTTA+GGG - chr6_2:25930893-25930912 Msa0913900:CDS 25.0%
! ATGTTTAAATTATCAGTGGT+GGG + chr6_2:25931358-25931377 None:intergenic 25.0%
! TATGTTTAAATTATCAGTGG+TGG + chr6_2:25931359-25931378 None:intergenic 25.0%
!! GGTGTGTACATTATTAATTT+TGG - chr6_2:25931590-25931609 Msa0913900:intron 25.0%
!!! AGGTATATTTAATTTTCAGG+TGG - chr6_2:25931628-25931647 Msa0913900:intron 25.0%
!!! GGTATATTTAATTTTCAGGT+GGG - chr6_2:25931629-25931648 Msa0913900:intron 25.0%
! TTGTAATAGGGGAAATTAAT+TGG + chr6_2:25931730-25931749 None:intergenic 25.0%
!! TAGTTTAGAACTTGTAATAG+GGG + chr6_2:25931741-25931760 None:intergenic 25.0%
!! GATAGTTTAGAACTTGTAAT+AGG + chr6_2:25931743-25931762 None:intergenic 25.0%
!!! TTTGAATTTTGAAGCATGTT+TGG + chr6_2:25931801-25931820 None:intergenic 25.0%
! CCAATGAAAACCATAAATTA+AGG + chr6_2:25932179-25932198 None:intergenic 25.0%
!! CCTTAATTTATGGTTTTCAT+TGG - chr6_2:25932176-25932195 Msa0913900:intron 25.0%
!! TTTAAAATTCACGAACAACT+CGG + chr6_2:25932300-25932319 None:intergenic 25.0%
!!! CTATTTTTTTAACTCGAGTT+CGG + chr6_2:25932327-25932346 None:intergenic 25.0%
! TCTTTACTATAAGGCTATTT+AGG + chr6_2:25932640-25932659 None:intergenic 25.0%
!! GATCTTTACTCTTTTTCTAT+AGG - chr6_2:25932775-25932794 Msa0913900:intron 25.0%
!!! AATTTTGGAATTTGCATGTT+TGG - chr6_2:25932967-25932986 Msa0913900:intron 25.0%
!!! AACACTTGTCACTTTTTTAT+AGG - chr6_2:25933183-25933202 Msa0913900:intron 25.0%
! GTAACGTATAACTAAATGTT+AGG - chr6_2:25933252-25933271 Msa0913900:intron 25.0%
!!! ATACCAACAAAATTTTAGGT+AGG - chr6_2:25933279-25933298 Msa0913900:intron 25.0%
!!! TTTTTGTTTGTGTCTTGTTA+AGG + chr6_2:25933480-25933499 None:intergenic 25.0%
!!! CACTATAGATTTTAACATGA+GGG + chr6_2:25933628-25933647 None:intergenic 25.0%
!!! TCACTATAGATTTTAACATG+AGG + chr6_2:25933629-25933648 None:intergenic 25.0%
! AGGATAAGAAATTACTTTGT+GGG + chr6_2:25933842-25933861 None:intergenic 25.0%
! AAGGATAAGAAATTACTTTG+TGG + chr6_2:25933843-25933862 None:intergenic 25.0%
! TAGGTATTTGATTATGTTTG+GGG - chr6_2:25933930-25933949 Msa0913900:intron 25.0%
TAAGGGTTGAATTGTTATAG+TGG + chr6_2:25930291-25930310 None:intergenic 30.0%
GTAACAAAGGTTTGTAGTAA+CGG + chr6_2:25930316-25930335 None:intergenic 30.0%
TTGATGGAAACATCTTAAAG+GGG + chr6_2:25930378-25930397 None:intergenic 30.0%
CTTTGATGGAAACATCTTAA+AGG + chr6_2:25930380-25930399 None:intergenic 30.0%
GAACAACCTTAAAAACACAA+AGG - chr6_2:25930399-25930418 Msa0913900:CDS 30.0%
TTATTCTCTTGAAGAGTTGT+TGG + chr6_2:25930500-25930519 None:intergenic 30.0%
!!! ATTTTTGGTGAGATAACTTG+AGG + chr6_2:25930533-25930552 None:intergenic 30.0%
TCAAGTTATCTCACCAAAAA+TGG - chr6_2:25930532-25930551 Msa0913900:intron 30.0%
GAATTGGAGCGAAAAATTTA+AGG + chr6_2:25930701-25930720 None:intergenic 30.0%
ATACGGTATAGGAGAAAATT+TGG + chr6_2:25930795-25930814 None:intergenic 30.0%
!! ATTGGGTTTGATTTGTTTAG+GGG - chr6_2:25930894-25930913 Msa0913900:CDS 30.0%
AAAAAAAGTGGAAATCCTAG+AGG + chr6_2:25931099-25931118 None:intergenic 30.0%
ATACACAAATAGAAGATTGG+TGG - chr6_2:25931156-25931175 Msa0913900:intron 30.0%
TCAAATGAGATAAACACAAG+TGG + chr6_2:25931184-25931203 None:intergenic 30.0%
TTTGGGCAATAAATTCAACT+AGG - chr6_2:25931608-25931627 Msa0913900:intron 30.0%
!!! ATTTAATTTTCAGGTGGGAA+TGG - chr6_2:25931634-25931653 Msa0913900:intron 30.0%
ATCAAATAGTTCCTAACCAT+TGG + chr6_2:25931948-25931967 None:intergenic 30.0%
TGTGAAAGAAACCAAAGTTA+AGG + chr6_2:25932113-25932132 None:intergenic 30.0%
! AACTTTGGTTTCTTTCACAA+AGG - chr6_2:25932114-25932133 Msa0913900:intron 30.0%
TATGTGTCTCCCTTAATTTA+TGG - chr6_2:25932166-25932185 Msa0913900:intron 30.0%
AAAACAAAACAGAAAGGTCA+CGG + chr6_2:25932225-25932244 None:intergenic 30.0%
ACACTTATTAGCATGATCTA+GGG + chr6_2:25932440-25932459 None:intergenic 30.0%
AACACTTATTAGCATGATCT+AGG + chr6_2:25932441-25932460 None:intergenic 30.0%
! CATGCTAATAAGTGTTTCTA+AGG - chr6_2:25932445-25932464 Msa0913900:intron 30.0%
!! TAATAAGTGTTTCTAAGGCA+TGG - chr6_2:25932450-25932469 Msa0913900:intron 30.0%
TGAAAATGGAAGTGAAAACA+TGG - chr6_2:25932860-25932879 Msa0913900:intron 30.0%
GAAAATGGAAGTGAAAACAT+GGG - chr6_2:25932861-25932880 Msa0913900:intron 30.0%
!! TACATTTCTTGGTTTGTCTT+AGG - chr6_2:25932994-25933013 Msa0913900:CDS 30.0%
! GTTCCTACCTAAAATTTTGT+TGG + chr6_2:25933285-25933304 None:intergenic 30.0%
TTCTCACGAATAAATCATTG+TGG - chr6_2:25933426-25933445 Msa0913900:intron 30.0%
TAATCGCACTAAAGTACATT+AGG + chr6_2:25933594-25933613 None:intergenic 30.0%
!! TATAGATTTTAACATGAGGG+AGG + chr6_2:25933625-25933644 None:intergenic 30.0%
! TGATTATGTTTGGGGTATAA+AGG - chr6_2:25933938-25933957 Msa0913900:intron 30.0%
ACCATTCAGACAAATTTGAT+GGG - chr6_2:25934000-25934019 Msa0913900:intron 30.0%
TATCACTCATCAGTTATCAT+AGG + chr6_2:25934223-25934242 None:intergenic 30.0%
GATAAATAAATATGGTGTGC+AGG - chr6_2:25934239-25934258 Msa0913900:CDS 30.0%
GGTTTGTAGTAACGGTTTAA+GGG + chr6_2:25930308-25930327 None:intergenic 35.0%
AGGTTTGTAGTAACGGTTTA+AGG + chr6_2:25930309-25930328 None:intergenic 35.0%
!!! TAAGTGTTGGTGTTGGTTTT+CGG + chr6_2:25930349-25930368 None:intergenic 35.0%
!!! GCTAATTTCTCTGCCATTTT+TGG + chr6_2:25930548-25930567 None:intergenic 35.0%
AAATGGCAGAGAAATTAGCT+AGG - chr6_2:25930549-25930568 Msa0913900:intron 35.0%
! TAGCCTTGGTATAACATCTA+TGG - chr6_2:25930616-25930635 Msa0913900:intron 35.0%
! AAGATTTTCATGGCAAATGG+AGG - chr6_2:25930658-25930677 Msa0913900:CDS 35.0%
TATTACATCGGATACGGTAT+AGG + chr6_2:25930806-25930825 None:intergenic 35.0%
! ATTCCTTGGTCTGAAATGTT+TGG - chr6_2:25930926-25930945 Msa0913900:CDS 35.0%
GTTAGGAACTATTTGATACG+TGG - chr6_2:25931951-25931970 Msa0913900:intron 35.0%
TGGTTTCTTTCACAAAGGAT+TGG - chr6_2:25932119-25932138 Msa0913900:intron 35.0%
AAACAAAACAGAAAGGTCAC+GGG + chr6_2:25932224-25932243 None:intergenic 35.0%
AACAAGTGTCATAAGAACAC+TGG + chr6_2:25932578-25932597 None:intergenic 35.0%
! TGTGGCTTGAAGCTAAATTT+TGG - chr6_2:25932952-25932971 Msa0913900:intron 35.0%
! TTTGGAATTTGCATGTTTGG+TGG - chr6_2:25932970-25932989 Msa0913900:intron 35.0%
! TGTTTGGTGGATACATTTCT+TGG - chr6_2:25932983-25933002 Msa0913900:intron 35.0%
ATTTCATGCACACTTTGTGA+TGG - chr6_2:25933094-25933113 Msa0913900:intron 35.0%
!!! GTCACTTTTTTATAGGCAAG+AGG - chr6_2:25933190-25933209 Msa0913900:intron 35.0%
! TTTTATAGGCAAGAGGTTGT+CGG - chr6_2:25933197-25933216 Msa0913900:intron 35.0%
TTAATAATTCAGAGTCCGAG+AGG - chr6_2:25933353-25933372 Msa0913900:intron 35.0%
TCTTGTTAAGGAATGTCTCT+AGG + chr6_2:25933468-25933487 None:intergenic 35.0%
GTCTTGGAATTACGGTATTT+GGG - chr6_2:25933722-25933741 Msa0913900:intron 35.0%
GTTCATAGAAGATTCTCAGT+GGG - chr6_2:25933775-25933794 Msa0913900:CDS 35.0%
CACCATTCAGACAAATTTGA+TGG - chr6_2:25933999-25934018 Msa0913900:intron 35.0%
CCATTCAGACAAATTTGATG+GGG - chr6_2:25934001-25934020 Msa0913900:intron 35.0%
AAGAATACAGCTCTTACCTT+TGG + chr6_2:25934050-25934069 None:intergenic 35.0%
AGCTAGAGAAAGAGATAAGT+AGG - chr6_2:25934289-25934308 Msa0913900:CDS 35.0%
TAGAGAAAGAGATAAGTAGG+AGG - chr6_2:25934292-25934311 Msa0913900:CDS 35.0%
GGGTTGAATTGTTATAGTGG+CGG + chr6_2:25930288-25930307 None:intergenic 40.0%
CGGAGATGATAAGGTAACAA+AGG + chr6_2:25930329-25930348 None:intergenic 40.0%
!!! GTTGGTTTTCGGAGATGATA+AGG + chr6_2:25930338-25930357 None:intergenic 40.0%
!! GACAAGATAAGTGTTGGTGT+TGG + chr6_2:25930356-25930375 None:intergenic 40.0%
AAAGGGGACAAGATAAGTGT+TGG + chr6_2:25930362-25930381 None:intergenic 40.0%
CTTCACACTTTGTGTTCTCA+TGG - chr6_2:25930430-25930449 Msa0913900:intron 40.0%
TCCAAAACGTGACACACAAA+TGG - chr6_2:25930457-25930476 Msa0913900:intron 40.0%
! TCCATTTGTGTGTCACGTTT+TGG + chr6_2:25930461-25930480 None:intergenic 40.0%
CAGCCATAGATGTTATACCA+AGG + chr6_2:25930622-25930641 None:intergenic 40.0%
!! GTTTGATTTGTTTAGGGGAG+TGG - chr6_2:25930899-25930918 Msa0913900:CDS 40.0%
GTACCAAACATTTCAGACCA+AGG + chr6_2:25930932-25930951 None:intergenic 40.0%
TGGTACATTTGCTCTATCAG+TGG - chr6_2:25930946-25930965 Msa0913900:CDS 40.0%
GGTACATTTGCTCTATCAGT+GGG - chr6_2:25930947-25930966 Msa0913900:CDS 40.0%
! GGTGGGATTGTCAAGAATTT+TGG + chr6_2:25931341-25931360 None:intergenic 40.0%
!!! AATGGAGTTTTGGGCTAGAT+GGG - chr6_2:25931652-25931671 Msa0913900:intron 40.0%
TCCTTCTCTTGCTCTATGAT+GGG + chr6_2:25932034-25932053 None:intergenic 40.0%
! TTATTAGCATGATCTAGGGC+AGG + chr6_2:25932436-25932455 None:intergenic 40.0%
AAACTTTACGCATCTCCTCT+CGG + chr6_2:25933371-25933390 None:intergenic 40.0%
AAGACCCTGCTCGTAAATAA+GGG + chr6_2:25933707-25933726 None:intergenic 40.0%
GGTCTTGGAATTACGGTATT+TGG - chr6_2:25933721-25933740 Msa0913900:intron 40.0%
TGGAATTACGGTATTTGGGA+TGG - chr6_2:25933726-25933745 Msa0913900:intron 40.0%
TCCATCGTGTACAAACATGT+AGG + chr6_2:25933752-25933771 None:intergenic 40.0%
CATGTTTGTACACGATGGAT+TGG - chr6_2:25933753-25933772 Msa0913900:CDS 40.0%
GGTTCATAGAAGATTCTCAG+TGG - chr6_2:25933774-25933793 Msa0913900:CDS 40.0%
AAATAGGGCACATTGGCAAT+GGG + chr6_2:25933802-25933821 None:intergenic 40.0%
CAATGTGCCCTATTTCAGAA+GGG - chr6_2:25933807-25933826 Msa0913900:intron 40.0%
CCCCATCAAATTTGTCTGAA+TGG + chr6_2:25934004-25934023 None:intergenic 40.0%
! AAATTTGATGGGGTGCCATA+TGG - chr6_2:25934011-25934030 Msa0913900:intron 40.0%
! AATTTGATGGGGTGCCATAT+GGG - chr6_2:25934012-25934031 Msa0913900:intron 40.0%
AATGGAGGCAAGTAGTGTGA+TGG - chr6_2:25930673-25930692 Msa0913900:CDS 45.0%
! TTCAGGTGGGAATGGAGTTT+TGG - chr6_2:25931642-25931661 Msa0913900:intron 45.0%
! TCAGGTGGGAATGGAGTTTT+GGG - chr6_2:25931643-25931662 Msa0913900:intron 45.0%
!!! GAATGGAGTTTTGGGCTAGA+TGG - chr6_2:25931651-25931670 Msa0913900:intron 45.0%
ATGGGTCTTGCTTCAACTTG+TGG + chr6_2:25931873-25931892 None:intergenic 45.0%
TCCCATCATAGAGCAAGAGA+AGG - chr6_2:25932030-25932049 Msa0913900:intron 45.0%
CTCCTTCTCTTGCTCTATGA+TGG + chr6_2:25932035-25932054 None:intergenic 45.0%
AAGTTAAGGAGAGCGATAGC+AGG + chr6_2:25932099-25932118 None:intergenic 45.0%
GCTATCGCTCTCCTTAACTT+TGG - chr6_2:25932099-25932118 Msa0913900:intron 45.0%
!! TTTCACAAAGGATTGGTCCC+TGG - chr6_2:25932126-25932145 Msa0913900:intron 45.0%
!! GTTTTCATTGGCTACCCTTG+CGG - chr6_2:25932188-25932207 Msa0913900:intron 45.0%
! TGTCACCCTTATTTACGAGC+AGG - chr6_2:25933699-25933718 Msa0913900:intron 45.0%
! GTCACCCTTATTTACGAGCA+GGG - chr6_2:25933700-25933719 Msa0913900:intron 45.0%
CAAGACCCTGCTCGTAAATA+AGG + chr6_2:25933708-25933727 None:intergenic 45.0%
CTTATTTACGAGCAGGGTCT+TGG - chr6_2:25933706-25933725 Msa0913900:intron 45.0%
GCCTACATGTTTGTACACGA+TGG - chr6_2:25933748-25933767 Msa0913900:CDS 45.0%
GAAATAGGGCACATTGGCAA+TGG + chr6_2:25933803-25933822 None:intergenic 45.0%
!! CCTTCTGAAATAGGGCACAT+TGG + chr6_2:25933809-25933828 None:intergenic 45.0%
CCAATGTGCCCTATTTCAGA+AGG - chr6_2:25933806-25933825 Msa0913900:intron 45.0%
!! GCAGCTACCCTTCTGAAATA+GGG + chr6_2:25933817-25933836 None:intergenic 45.0%
!! TGCAGCTACCCTTCTGAAAT+AGG + chr6_2:25933818-25933837 None:intergenic 45.0%
!!! GTGCCATATGGGCTGTTTTT+GGG - chr6_2:25934023-25934042 Msa0913900:CDS 45.0%
ATATGGTGTGCAGGAACTTG+AGG - chr6_2:25934248-25934267 Msa0913900:CDS 45.0%
!! ATTATCAAAATAAAAAAAAA+TGG + chr6_2:25930995-25931014 None:intergenic 5.0%
!! CTATTATTATTATTATTATT+AGG - chr6_2:25933911-25933930 Msa0913900:intron 5.0%
GCAGCTGTTATGTCTAGCCT+TGG - chr6_2:25930602-25930621 Msa0913900:intron 50.0%
AGGGGAGTGGAGAAATTCCT+TGG - chr6_2:25930912-25930931 Msa0913900:CDS 50.0%
CTCTTTGGCATGCTTCCTTG+TGG - chr6_2:25931684-25931703 Msa0913900:intron 50.0%
TTCCTTGTGGCACATGCATG+AGG - chr6_2:25931697-25931716 Msa0913900:intron 50.0%
TACCTCATGCATGTGCCACA+AGG + chr6_2:25931702-25931721 None:intergenic 50.0%
! TTGGTCCCTGGTCTTTGCTT+TGG - chr6_2:25932138-25932157 Msa0913900:intron 50.0%
CGAGCAGGGTCTTGGAATTA+CGG - chr6_2:25933714-25933733 Msa0913900:intron 50.0%
!! GGTGCCATATGGGCTGTTTT+TGG - chr6_2:25934022-25934041 Msa0913900:CDS 50.0%
GGTCCCAAAAACAGCCCATA+TGG + chr6_2:25934029-25934048 None:intergenic 50.0%
!!! TGGGCTGTTTTTGGGACCAA+AGG - chr6_2:25934031-25934050 Msa0913900:CDS 50.0%
TGTGCAGGAACTTGAGGAAG+TGG - chr6_2:25934254-25934273 Msa0913900:CDS 50.0%
GTGCAGGAACTTGAGGAAGT+GGG - chr6_2:25934255-25934274 Msa0913900:CDS 50.0%
AGGAACTTGAGGAAGTGGGA+GGG - chr6_2:25934259-25934278 Msa0913900:CDS 50.0%
! TTGGGCTAGATGGGCTCACA+AGG - chr6_2:25931661-25931680 Msa0913900:intron 55.0%
! GATGGGCTCACAAGGCTCTT+TGG - chr6_2:25931669-25931688 Msa0913900:intron 55.0%
CCGCACCAAAGCAAAGACCA+GGG + chr6_2:25932146-25932165 None:intergenic 55.0%
! CCCTGGTCTTTGCTTTGGTG+CGG - chr6_2:25932143-25932162 Msa0913900:intron 55.0%
ACCGCACCAAAGCAAAGACC+AGG + chr6_2:25932147-25932166 None:intergenic 55.0%
ATTGGCTACCCTTGCGGTGA+AGG - chr6_2:25932194-25932213 Msa0913900:intron 55.0%
TTGGCTACCCTTGCGGTGAA+GGG - chr6_2:25932195-25932214 Msa0913900:intron 55.0%
CAGGAACTTGAGGAAGTGGG+AGG - chr6_2:25934258-25934277 Msa0913900:CDS 55.0%
CGGGTAACCCTTCACCGCAA+GGG + chr6_2:25932205-25932224 None:intergenic 60.0%
ACGGGTAACCCTTCACCGCA+AGG + chr6_2:25932206-25932225 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 25930269 25934439 25930269 ID=Msa0913900;Name=Msa0913900
chr6_2 mRNA 25930269 25934439 25930269 ID=Msa0913900-mRNA-1;Parent=Msa0913900;Name=Msa0913900-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.83|0.85|1|1|1|7|101|316
chr6_2 exon 25930269 25930447 25930269 ID=Msa0913900-mRNA-1:exon:4996;Parent=Msa0913900-mRNA-1
chr6_2 exon 25930656 25930712 25930656 ID=Msa0913900-mRNA-1:exon:4995;Parent=Msa0913900-mRNA-1
chr6_2 exon 25930862 25930987 25930862 ID=Msa0913900-mRNA-1:exon:4994;Parent=Msa0913900-mRNA-1
chr6_2 exon 25932544 25932678 25932544 ID=Msa0913900-mRNA-1:exon:4993;Parent=Msa0913900-mRNA-1
chr6_2 exon 25932990 25933061 25932990 ID=Msa0913900-mRNA-1:exon:4992;Parent=Msa0913900-mRNA-1
chr6_2 exon 25933732 25933794 25933732 ID=Msa0913900-mRNA-1:exon:4991;Parent=Msa0913900-mRNA-1
chr6_2 exon 25934020 25934439 25934020 ID=Msa0913900-mRNA-1:exon:4990;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25934020 25934439 25934020 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25933732 25933794 25933732 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25932990 25933061 25932990 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25932544 25932678 25932544 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25930862 25930987 25930862 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25930656 25930712 25930656 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 CDS 25930370 25930447 25930370 ID=Msa0913900-mRNA-1:cds;Parent=Msa0913900-mRNA-1
chr6_2 three_prime_UTR 25930269 25930369 25930269 ID=Msa0913900-mRNA-1:three_prime_utr;Parent=Msa0913900-mRNA-1
Gene Sequence

>Msa0913900

ATGGCGGCAGGACTAACCGCCACTATAACAATTCAACCCTTAAACCGTTACTACAAACCTTTGTTACCTTATCATCTCCGAAAACCAACACCAACACTTATCTTGTCCCCTTTAAGATGTTTCCATCAAAGAACAACCTTAAAAACACAAAGGTTGAAAAGCTTCACACTTTGTGTTCTCATGGAAGATCCAAAACGTGACACACAAATGGAAATTGAAGAAGAAAAACCAACAACTCTTCAAGAGAATAATTATATTATTCCTCAAGTTATCTCACCAAAAATGGCAGAGAAATTAGCTAGGAAGAAATCAGAGAGATTTACGTATCTTGTTGCAGCTGTTATGTCTAGCCTTGGTATAACATCTATGGCTGTGTTGTCTGTTTATTTAAGATTTTCATGGCAAATGGAGGCAAGTAGTGGGAGTGGAGAAATTCCTTGGTCTGAAATGTTTGGTACATTTGCTCTATCAGTGGGTGCTGCTGTGGGAATGGAGTTTTGGGCTAGATGGGCTCACAAGGCTCTTTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCATCATAGAGCAAGAGAAGGAGCTTTCGAGTTGAATGATGTTTTTGCAATAATCAATGCTGTTCCTGCTATCGCTCTCCTTAACTTTGGTTTCTTTCACAAAGGATTGGTCCCTGGTCTTTGCTTTGGTGCGGGTCTTGGAATTACGGTATTTGGGATGGCCTACATGTTTGTACACGATGGATTGGTTCATAGAAGATTCTCAGTGGGACCCATTGCCAATGTGCCCTATTTCAGAAGGGTAGCTGCAGCCCACAAACTTCACCATTCAGACAAATTTGATGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAACTTGAGGAAGTGGGAGGGCTAGAAGAGCTAGAGAAAGAGATAAGTAGGAGGACAAAATCATACAATAGTTCATAA

Protein sequence

>Msa0913900

MAAGLTATITIQPLNRYYKPLLPYHLRKPTPTLILSPLRCFHQRTTLKTQRLKSFTLCVLMEDPKRDTQMEIEEEKPTTLQENNYIIPQVISPKMAEKLARKKSERFTYLVAAVMSSLGITSMAVLSVYLRFSWQMEASSGSGEIPWSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRAREGAFELNDVFAIINAVPAIALLNFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFSVGPIANVPYFRRVAAAHKLHHSDKFDGVPYGLFLGPKELEEVGGLEELEKEISRRTKSYNSS*