Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888860 | XP_024631200.1 | 87.797 | 590 | 61 | 6 | 1 | 583 | 1 | 586 | 0.0 | 1034 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888860 | sp|Q9FQ03|XRN3_ARATH | 67.005 | 591 | 176 | 9 | 1 | 583 | 1 | 580 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888860 | A0A396JH84 | 87.797 | 590 | 61 | 6 | 1 | 583 | 1 | 586 | 0.0 | 1034 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0888860 | Msa0910690 | 0.876762 | 1.079283e-68 | -8.615850e-47 |
| Msa0888860 | Msa0911970 | 0.886380 | 3.597401e-72 | -8.615850e-47 |
| Msa0888860 | Msa0916690 | 0.804753 | 1.857075e-49 | -8.615850e-47 |
| Msa0888860 | Msa0959930 | 0.830496 | 2.842757e-55 | -8.615850e-47 |
| Msa0888860 | Msa0985620 | 0.840829 | 6.869518e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888860 | MtrunA17_Chr1g0156381 | 87.797 | 590 | 61 | 6 | 1 | 583 | 1 | 586 | 0.0 | 1034 |
| Msa0888860 | MtrunA17_Chr7g0240901 | 76.610 | 590 | 121 | 7 | 1 | 583 | 1 | 580 | 0.0 | 894 |
| Msa0888860 | MtrunA17_Chr4g0030651 | 76.740 | 589 | 119 | 7 | 1 | 583 | 1 | 577 | 0.0 | 887 |
| Msa0888860 | MtrunA17_Chr1g0191031 | 58.768 | 422 | 164 | 3 | 1 | 419 | 1 | 415 | 4.14e-168 | 503 |
| Msa0888860 | MtrunA17_Chr1g0191031 | 46.341 | 82 | 39 | 1 | 502 | 583 | 407 | 483 | 1.55e-18 | 90.1 |
| Msa0888860 | MtrunA17_Chr7g0273801 | 58.102 | 432 | 173 | 5 | 1 | 428 | 1 | 428 | 3.69e-163 | 491 |
| Msa0888860 | MtrunA17_Chr7g0273801 | 63.462 | 52 | 18 | 1 | 532 | 583 | 439 | 489 | 2.07e-14 | 77.0 |
| Msa0888860 | MtrunA17_Chr4g0025871 | 40.429 | 606 | 248 | 10 | 1 | 583 | 1 | 516 | 3.05e-130 | 398 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888860 | AT1G75660.1 | 67.005 | 591 | 176 | 9 | 1 | 583 | 1 | 580 | 0.0 | 734 |
| Msa0888860 | AT5G42540.2 | 58.883 | 591 | 216 | 11 | 1 | 583 | 1 | 572 | 0.0 | 627 |
| Msa0888860 | AT5G42540.1 | 58.883 | 591 | 216 | 11 | 1 | 583 | 1 | 572 | 0.0 | 626 |
| Msa0888860 | AT1G54490.1 | 59.765 | 425 | 162 | 5 | 1 | 421 | 1 | 420 | 1.56e-164 | 495 |
| Msa0888860 | AT1G54490.1 | 53.750 | 80 | 32 | 2 | 504 | 583 | 412 | 486 | 4.25e-17 | 85.9 |
| Msa0888860 | AT1G54490.2 | 58.592 | 355 | 139 | 4 | 71 | 421 | 12 | 362 | 1.04e-127 | 397 |
| Msa0888860 | AT1G54490.2 | 53.750 | 80 | 32 | 2 | 504 | 583 | 354 | 428 | 3.82e-17 | 86.3 |
Find 172 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCATATTCAAGATTATT+AGG | 0.184132 | 6_1:-54401978 | None:intergenic |
| GCCTAGGAAGCTTCTCTTTA+TGG | 0.199961 | 6_1:+54402813 | Msa0888860:CDS |
| GTTTGTAGTTTCTGAATATT+TGG | 0.223066 | 6_1:+54404504 | Msa0888860:intron |
| TCAGGAGAATTTGATGAAAA+AGG | 0.233715 | 6_1:+54404368 | Msa0888860:CDS |
| TGCTCGACTCTGCTCAAATT+TGG | 0.250358 | 6_1:-54405064 | None:intergenic |
| AACAAATTTCTTCCTTCTTC+GGG | 0.266184 | 6_1:+54401798 | Msa0888860:five_prime_UTR |
| TAACAAATTTCTTCCTTCTT+CGG | 0.270849 | 6_1:+54401797 | Msa0888860:five_prime_UTR |
| AAAGTTGCCGATTCCTCTTT+AGG | 0.277058 | 6_1:-54403597 | None:intergenic |
| AAGCTTCTCTTTATGGCTAT+TGG | 0.293967 | 6_1:+54402820 | Msa0888860:CDS |
| CTCCACAAGCCATCTGTAAA+AGG | 0.320160 | 6_1:-54401859 | None:intergenic |
| TTGTTGATAGTGTTCTGTTT+TGG | 0.324921 | 6_1:-54401730 | None:intergenic |
| ATCTATTTCAAGACTATTCT+CGG | 0.326915 | 6_1:-54405975 | None:intergenic |
| TACAATACTATATTCATCTT+AGG | 0.337529 | 6_1:+54403676 | Msa0888860:CDS |
| TATCATATTCAAGATTATTA+GGG | 0.344500 | 6_1:-54401977 | None:intergenic |
| TAAAGTTTCTAAGTTATCTT+CGG | 0.348403 | 6_1:+54405922 | Msa0888860:intron |
| TCGTGTGGCTGACGGGCTTC+CGG | 0.348598 | 6_1:+54408095 | Msa0888860:CDS |
| CCTGCACCATTTCAACAATC+TGG | 0.349992 | 6_1:+54405851 | Msa0888860:CDS |
| CTTTCTGATGCAAATGTTCC+CGG | 0.352759 | 6_1:+54403833 | Msa0888860:CDS |
| TCGATCTCAAAAGGAGGATT+AGG | 0.358412 | 6_1:-54404563 | None:intergenic |
| CCGAGGAACTTGATGCTATA+CGG | 0.366750 | 6_1:+54407274 | Msa0888860:CDS |
| AGTATACAAGAAGGAACTTA+AGG | 0.372016 | 6_1:+54404897 | Msa0888860:CDS |
| CACACCTGGAACTGAATTCA+TGG | 0.374752 | 6_1:+54403635 | Msa0888860:CDS |
| GCATGTTTGATTACATTGAT+AGG | 0.378445 | 6_1:+54402773 | Msa0888860:CDS |
| ATCCTTCAAGATTTCTTTGA+AGG | 0.380883 | 6_1:-54403889 | None:intergenic |
| ATTTCTTTGAAGGCGGATAT+AGG | 0.382834 | 6_1:-54403879 | None:intergenic |
| CAAATGCTTGTGTGGTCAAA+TGG | 0.388119 | 6_1:+54404304 | Msa0888860:CDS |
| TTATTCTTTCCACCGTTAGC+TGG | 0.389609 | 6_1:-54405718 | None:intergenic |
| AAAGTTTCTAAGTTATCTTC+GGG | 0.406060 | 6_1:+54405923 | Msa0888860:intron |
| AGCTTCTTCGTGTGGCTGAC+GGG | 0.414500 | 6_1:+54408088 | Msa0888860:CDS |
| CGCCTTCAAAGAAATCTTGA+AGG | 0.414724 | 6_1:+54403887 | Msa0888860:CDS |
| TGTACACGACATTGCCTGTA+TGG | 0.415505 | 6_1:+54403920 | Msa0888860:CDS |
| TAAACCGCCTTGACCGTTGC+TGG | 0.416833 | 6_1:-54402965 | None:intergenic |
| TTGGACTCTGAGGGAATGTC+TGG | 0.425345 | 6_1:+54404523 | Msa0888860:CDS |
| GAGCTTCTTCGTGTGGCTGA+CGG | 0.426247 | 6_1:+54408087 | Msa0888860:CDS |
| TGTTTAACATGGTGCGGCCT+AGG | 0.428483 | 6_1:+54402797 | Msa0888860:CDS |
| CAGATTAAGTTGGGAGAACC+AGG | 0.433553 | 6_1:+54407207 | Msa0888860:intron |
| AATCTTATGCTCCCCTTCAC+CGG | 0.435640 | 6_1:-54403852 | None:intergenic |
| GCAGCCATGAATTCAGTTCC+AGG | 0.442610 | 6_1:-54403639 | None:intergenic |
| GGAAAGGCTAAAAGGAAGTC+AGG | 0.447502 | 6_1:+54404350 | Msa0888860:CDS |
| TATTCAAGATTATTAGGGTT+AGG | 0.448277 | 6_1:-54401972 | None:intergenic |
| CCTCTATCCGATGGGAGTTC+CGG | 0.449475 | 6_1:+54401836 | Msa0888860:exon |
| TCTGATGTGTTCAACTCAAA+AGG | 0.458187 | 6_1:+54406253 | Msa0888860:CDS |
| ACACCTCCTCAAAAGAGGTC+GGG | 0.458509 | 6_1:-54402744 | None:intergenic |
| GATAACTTAGAAACTTTACT+AGG | 0.458869 | 6_1:-54405917 | None:intergenic |
| TTTCAGGTTGTATTTACTCC+TGG | 0.462901 | 6_1:+54404275 | Msa0888860:intron |
| AAAACGAGCTCGAATGCAAC+AGG | 0.463521 | 6_1:+54405129 | Msa0888860:CDS |
| CGTGCATGAAAACTGTTATT+CGG | 0.467250 | 6_1:+54401771 | Msa0888860:five_prime_UTR |
| GAGTCAGAAATCAGATGGCC+TGG | 0.468166 | 6_1:-54408163 | None:intergenic |
| GTGTGGTCAAATGGGTCATA+TGG | 0.470523 | 6_1:+54404313 | Msa0888860:CDS |
| ACTTCCTCCTAAAGAGGAAT+CGG | 0.472690 | 6_1:+54403590 | Msa0888860:CDS |
| GTTGGCCCAGATTGTTGAAA+TGG | 0.478219 | 6_1:-54405857 | None:intergenic |
| ATGCAAATGTTCCCGGTGAA+GGG | 0.483331 | 6_1:+54403840 | Msa0888860:CDS |
| CCGGAACTCCCATCGGATAG+AGG | 0.483895 | 6_1:-54401836 | None:intergenic |
| CATTCAAAATCGATCTCAAA+AGG | 0.484401 | 6_1:-54404572 | None:intergenic |
| TAATACCTCTCTTTCCAGCC+TGG | 0.489333 | 6_1:-54407225 | None:intergenic |
| CAAGAAGGAACTTAAGGGAA+TGG | 0.493096 | 6_1:+54404903 | Msa0888860:CDS |
| ATCTGAGTTCCTCTATCCGA+TGG | 0.496306 | 6_1:+54401827 | Msa0888860:exon |
| CCGTATAGCATCAAGTTCCT+CGG | 0.496492 | 6_1:-54407274 | None:intergenic |
| AAACGTGAAATTGAAATTGA+AGG | 0.496889 | 6_1:-54401702 | None:intergenic |
| CTCAAACACCTCCTCAAAAG+AGG | 0.497276 | 6_1:-54402749 | None:intergenic |
| ATATTTGACAAGCGGTAGTA+AGG | 0.498955 | 6_1:+54404930 | Msa0888860:CDS |
| CGTATAGCATCAAGTTCCTC+GGG | 0.501024 | 6_1:-54407273 | None:intergenic |
| GCTTCCGGTGGAAGTGAACA+TGG | 0.502741 | 6_1:+54408110 | Msa0888860:CDS |
| CATTGATAGGCTGTTTAACA+TGG | 0.504607 | 6_1:+54402786 | Msa0888860:CDS |
| GCCATAAAGAGAAGCTTCCT+AGG | 0.505863 | 6_1:-54402814 | None:intergenic |
| ACTGTGAAGGAAAGGCTAAA+AGG | 0.507871 | 6_1:+54404342 | Msa0888860:CDS |
| CACAAGCATTTGTCTTGACC+AGG | 0.508385 | 6_1:-54404293 | None:intergenic |
| CACCTCCTCAAAAGAGGTCG+GGG | 0.510452 | 6_1:-54402743 | None:intergenic |
| GCCATGTAGTGCTACTGCCC+AGG | 0.511791 | 6_1:+54408145 | Msa0888860:CDS |
| CTGCACCATTTCAACAATCT+GGG | 0.512162 | 6_1:+54405852 | Msa0888860:CDS |
| CTTAGGTTGAACAATGATCC+TGG | 0.517293 | 6_1:+54403693 | Msa0888860:CDS |
| TGTTGAAATGGTGCAGGCGT+TGG | 0.517474 | 6_1:-54405845 | None:intergenic |
| TTCTGAATATTTGGACTCTG+AGG | 0.518941 | 6_1:+54404513 | Msa0888860:CDS |
| TCTCAAACCCTGACCTGGAA+AGG | 0.519340 | 6_1:-54404413 | None:intergenic |
| GATTCAAATGTCATCACACC+TGG | 0.521016 | 6_1:+54403621 | Msa0888860:CDS |
| GTATACAAGAAGGAACTTAA+GGG | 0.522861 | 6_1:+54404898 | Msa0888860:CDS |
| AAGAAGGAACTTAAGGGAAT+GGG | 0.523737 | 6_1:+54404904 | Msa0888860:CDS |
| CAGAAAACTTCCTCCTAAAG+AGG | 0.527440 | 6_1:+54403584 | Msa0888860:CDS |
| TATAGATGGTGTTGCGCCAA+GGG | 0.530218 | 6_1:+54402932 | Msa0888860:intron |
| ATACACCGAGGGTCTATGTT+GGG | 0.530331 | 6_1:+54407397 | Msa0888860:CDS |
| TGATGCGGTCGAAGAAGAAC+CGG | 0.530602 | 6_1:+54401902 | Msa0888860:CDS |
| ATCTTATGCTCCCCTTCACC+GGG | 0.530616 | 6_1:-54403851 | None:intergenic |
| TACCATTCATGTCGAGGTAG+AGG | 0.531178 | 6_1:-54402001 | None:intergenic |
| AAGCAAGAGGAGATACTGTT+GGG | 0.532154 | 6_1:+54405756 | Msa0888860:CDS |
| AATTGAAGGACGATATGAAT+CGG | 0.533289 | 6_1:-54401688 | None:intergenic |
| TCTGAATATTTGGACTCTGA+GGG | 0.534393 | 6_1:+54404514 | Msa0888860:CDS |
| TCAGATCGACGACCCGAAGA+AGG | 0.535568 | 6_1:-54401810 | None:intergenic |
| GATGCAAATGTTCCCGGTGA+AGG | 0.536350 | 6_1:+54403839 | Msa0888860:CDS |
| CGTCCCATGTTCACTTCCAC+CGG | 0.538675 | 6_1:-54408114 | None:intergenic |
| AACACCTCCTCAAAAGAGGT+CGG | 0.539477 | 6_1:-54402745 | None:intergenic |
| GCCTGGGCAGTAGCACTACA+TGG | 0.540514 | 6_1:-54408146 | None:intergenic |
| AAATGCTTGTGTGGTCAAAT+GGG | 0.541246 | 6_1:+54404305 | Msa0888860:CDS |
| TTAAGTTGGGAGAACCAGGC+TGG | 0.541310 | 6_1:+54407211 | Msa0888860:CDS |
| CTGGAAAGAGAGGTATTATG+AGG | 0.542231 | 6_1:+54407230 | Msa0888860:CDS |
| CTATCTTCAGGATGAAAACA+TGG | 0.545336 | 6_1:-54402032 | None:intergenic |
| AGTCAGAAATCAGATGGCCT+GGG | 0.546169 | 6_1:-54408162 | None:intergenic |
| TGTGGCTGACGGGCTTCCGG+TGG | 0.548828 | 6_1:+54408098 | Msa0888860:CDS |
| CGAGAGGAATTTGAGAGGGA+GGG | 0.549293 | 6_1:+54403561 | Msa0888860:CDS |
| CGACTTGAAAATAAAGCTGA+AGG | 0.551149 | 6_1:+54406213 | Msa0888860:CDS |
| GATAGGCTATTGAAGAATCA+AGG | 0.551651 | 6_1:+54403535 | Msa0888860:intron |
| CCAGATTGTTGAAATGGTGC+AGG | 0.553150 | 6_1:-54405851 | None:intergenic |
| AACCTCTACCTCGACATGAA+TGG | 0.553368 | 6_1:+54401999 | Msa0888860:CDS |
| GTGATGCATTATTACTATGA+AGG | 0.554988 | 6_1:+54407419 | Msa0888860:CDS |
| GTATAGATGGTGTTGCGCCA+AGG | 0.557590 | 6_1:+54402931 | Msa0888860:intron |
| TTAGGTTTGCTAGAGTCTAT+CGG | 0.557861 | 6_1:-54401954 | None:intergenic |
| GGCTGCAGACTGTGAAGGAA+AGG | 0.559772 | 6_1:+54404334 | Msa0888860:CDS |
| GGTTGAACAATGATCCTGGT+TGG | 0.559878 | 6_1:+54403697 | Msa0888860:CDS |
| TGATATATACCAAACCATAC+AGG | 0.562216 | 6_1:-54403934 | None:intergenic |
| AACTTTATGTTACTCCAACC+AGG | 0.564158 | 6_1:-54403711 | None:intergenic |
| CTTCAAGATTTCTTTGAAGG+CGG | 0.564485 | 6_1:-54403886 | None:intergenic |
| CTAGTGTAGGCATGTGTGGT+AGG | 0.564650 | 6_1:-54404643 | None:intergenic |
| GTTGCAGTTTCTAAATTCCA+CGG | 0.566898 | 6_1:+54405803 | Msa0888860:CDS |
| AGAGACTCGGGTTGAACTTG+AGG | 0.568442 | 6_1:-54405779 | None:intergenic |
| CCTTCGATTTCGATGACGAC+CGG | 0.570304 | 6_1:-54401921 | None:intergenic |
| ACAAGCCATCTGTAAAAGGC+CGG | 0.570801 | 6_1:-54401855 | None:intergenic |
| CAAGCAAGAGGAGATACTGT+TGG | 0.572683 | 6_1:+54405755 | Msa0888860:CDS |
| ATCTCTAGTGTAGGCATGTG+TGG | 0.573598 | 6_1:-54404647 | None:intergenic |
| AAATGAACCAGCAACGGTCA+AGG | 0.575308 | 6_1:+54402958 | Msa0888860:CDS |
| CCGCATCAACGATAACCATC+GGG | 0.577445 | 6_1:-54401887 | None:intergenic |
| CGTCAGCAGTCACAAGCAAG+AGG | 0.578680 | 6_1:+54405743 | Msa0888860:CDS |
| GCTGTTGGATCATACGAAGA+TGG | 0.583297 | 6_1:+54405097 | Msa0888860:CDS |
| AGAAACTGCAACTAGAGACT+CGG | 0.585347 | 6_1:-54405792 | None:intergenic |
| AATACACCGAGGGTCTATGT+TGG | 0.589288 | 6_1:+54407396 | Msa0888860:CDS |
| GAAACTGCAACTAGAGACTC+GGG | 0.589294 | 6_1:-54405791 | None:intergenic |
| ACCGCATCAACGATAACCAT+CGG | 0.591067 | 6_1:-54401888 | None:intergenic |
| TACAGGCAATGTCGTGTACA+CGG | 0.591778 | 6_1:-54403917 | None:intergenic |
| ACGAGAGGAATTTGAGAGGG+AGG | 0.592042 | 6_1:+54403560 | Msa0888860:CDS |
| GTTACGAGAGGAATTTGAGA+GGG | 0.595252 | 6_1:+54403557 | Msa0888860:CDS |
| AAGGAACTTAAGGGAATGGG+TGG | 0.595705 | 6_1:+54404907 | Msa0888860:CDS |
| GGGTGCGATTAACTTGCTGA+TGG | 0.595924 | 6_1:+54404873 | Msa0888860:intron |
| TGCAAATGTTCCCGGTGAAG+GGG | 0.598957 | 6_1:+54403841 | Msa0888860:CDS |
| ACTTGAAAATAAAGCTGAAG+GGG | 0.599690 | 6_1:+54406215 | Msa0888860:CDS |
| TCTGAGTTCCTCTATCCGAT+GGG | 0.605556 | 6_1:+54401828 | Msa0888860:exon |
| TAAAAGGCCGGAACTCCCAT+CGG | 0.608543 | 6_1:-54401843 | None:intergenic |
| ATAGGCTGTTTAACATGGTG+CGG | 0.611977 | 6_1:+54402791 | Msa0888860:CDS |
| GACTTGAAAATAAAGCTGAA+GGG | 0.612878 | 6_1:+54406214 | Msa0888860:CDS |
| GAGAACCAGGCTGGAAAGAG+AGG | 0.613044 | 6_1:+54407220 | Msa0888860:CDS |
| CAACTCAAAAGGTGGTCATG+AGG | 0.614389 | 6_1:+54406264 | Msa0888860:CDS |
| TGTGCGAGTCAGAAATCAGA+TGG | 0.616777 | 6_1:-54408168 | None:intergenic |
| GGTGCGATTAACTTGCTGAT+GGG | 0.617267 | 6_1:+54404874 | Msa0888860:CDS |
| CTGATTTGGAGGCAGTGACG+TGG | 0.622502 | 6_1:+54408065 | Msa0888860:intron |
| GGGCTAAAATGAACCAGCAA+CGG | 0.623053 | 6_1:+54402952 | Msa0888860:CDS |
| TGACGTGGAGCTTCTTCGTG+TGG | 0.624884 | 6_1:+54408080 | Msa0888860:CDS |
| GGTTACGAGAGGAATTTGAG+AGG | 0.625714 | 6_1:+54403556 | Msa0888860:CDS |
| AAAAGGTGGTCATGAGGACA+AGG | 0.625945 | 6_1:+54406270 | Msa0888860:CDS |
| CCCGATGGTTATCGTTGATG+CGG | 0.627275 | 6_1:+54401887 | Msa0888860:CDS |
| GTTGCCGATTCCTCTTTAGG+AGG | 0.629901 | 6_1:-54403594 | None:intergenic |
| GAATGATACCATTCATGTCG+AGG | 0.635160 | 6_1:-54402007 | None:intergenic |
| TGCTAAAGATGCATCTGATG+CGG | 0.639455 | 6_1:+54402992 | Msa0888860:CDS |
| GCAATAAAGAAGTCTTTGAG+AGG | 0.642687 | 6_1:+54405894 | Msa0888860:CDS |
| TCAAAATCGATCTCAAAAGG+AGG | 0.644702 | 6_1:-54404569 | None:intergenic |
| ACCTCACGAATCTCTAGTGT+AGG | 0.645633 | 6_1:-54404656 | None:intergenic |
| CCGGTCGTCATCGAAATCGA+AGG | 0.645716 | 6_1:+54401921 | Msa0888860:CDS |
| TTTATAGCTCCAGCTAACGG+TGG | 0.648913 | 6_1:+54405709 | Msa0888860:intron |
| ATGGGTGGATATTTGACAAG+CGG | 0.650927 | 6_1:+54404922 | Msa0888860:CDS |
| TGAAGAATCAAGGTTACGAG+AGG | 0.653348 | 6_1:+54403545 | Msa0888860:CDS |
| CATCACCCAACATAGACCCT+CGG | 0.653625 | 6_1:-54407402 | None:intergenic |
| TAGGTCTTAAAATACACCGA+GGG | 0.657251 | 6_1:+54407386 | Msa0888860:intron |
| CATATGGCTGCAGACTGTGA+AGG | 0.664189 | 6_1:+54404329 | Msa0888860:CDS |
| GGTCAAGACAAATGCTTGTG+TGG | 0.667679 | 6_1:+54404296 | Msa0888860:CDS |
| CTGAATCAAGACGAGAACCG+TGG | 0.670349 | 6_1:-54405820 | None:intergenic |
| AATTTCTGCTCAGACTCCCG+AGG | 0.674281 | 6_1:+54407257 | Msa0888860:CDS |
| GATGTGTTCAACTCAAAAGG+TGG | 0.676030 | 6_1:+54406256 | Msa0888860:CDS |
| GCTGATGGGAGTATACAAGA+AGG | 0.677400 | 6_1:+54404888 | Msa0888860:CDS |
| CTTCCGGTGGAAGTGAACAT+GGG | 0.682054 | 6_1:+54408111 | Msa0888860:CDS |
| GCTTGTGGAGAAATACCCGA+TGG | 0.688991 | 6_1:+54401872 | Msa0888860:CDS |
| ACCTCCTCAAAAGAGGTCGG+GGG | 0.689067 | 6_1:-54402742 | None:intergenic |
| TGGGCAGTAGCACTACATGG+CGG | 0.691397 | 6_1:-54408143 | None:intergenic |
| GCATGAAAACTGTTATTCGG+CGG | 0.701025 | 6_1:+54401774 | Msa0888860:five_prime_UTR |
| TGAACCAGCAACGGTCAAGG+CGG | 0.706128 | 6_1:+54402961 | Msa0888860:CDS |
| GCCTACACTAGAGATTCGTG+AGG | 0.743826 | 6_1:+54404655 | Msa0888860:CDS |
| TTAGGTCTTAAAATACACCG+AGG | 0.755633 | 6_1:+54407385 | Msa0888860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTACATTATTTTTTATA+GGG | + | chr6_1:54404853-54404872 | Msa0888860:intron | 10.0% |
| !! | TATCATATTCAAGATTATTA+GGG | - | chr6_1:54401980-54401999 | None:intergenic | 15.0% |
| !! | TTATCATATTCAAGATTATT+AGG | - | chr6_1:54401981-54402000 | None:intergenic | 15.0% |
| !!! | ATAATTGTTGTTGTTTTTAT+TGG | + | chr6_1:54402126-54402145 | Msa0888860:intron | 15.0% |
| !!! | TTTTTGATTTTGTGATTTAT+TGG | + | chr6_1:54403040-54403059 | Msa0888860:intron | 15.0% |
| !!! | ATTGTTATCTAAATTTTGTA+TGG | + | chr6_1:54403745-54403764 | Msa0888860:intron | 15.0% |
| !!! | GAACTTACATTATTTTTTAT+AGG | + | chr6_1:54404852-54404871 | Msa0888860:intron | 15.0% |
| !!! | TATTTGATAATAGTTACAAA+TGG | - | chr6_1:54406716-54406735 | None:intergenic | 15.0% |
| !!! | AAATTGAAGTTTTATTAGTT+TGG | + | chr6_1:54407316-54407335 | Msa0888860:intron | 15.0% |
| !!! | ATCGCTGTTATTATTATTTT+TGG | + | chr6_1:54402195-54402214 | Msa0888860:intron | 20.0% |
| !! | GAATGTTAATATATACTTCA+GGG | - | chr6_1:54402239-54402258 | None:intergenic | 20.0% |
| !! | TGAATGTTAATATATACTTC+AGG | - | chr6_1:54402240-54402259 | None:intergenic | 20.0% |
| !! | TATATACACATACATAGTTT+AGG | + | chr6_1:54402325-54402344 | Msa0888860:intron | 20.0% |
| !! | ATATACACATACATAGTTTA+GGG | + | chr6_1:54402326-54402345 | Msa0888860:intron | 20.0% |
| !! | AACTGAAAAAGATAAAATGA+AGG | + | chr6_1:54402429-54402448 | Msa0888860:intron | 20.0% |
| !! | GTTATTGTTGTGTTAAATAT+AGG | + | chr6_1:54403217-54403236 | Msa0888860:intron | 20.0% |
| !! | TCTATTGCTAAGAAAAATAT+AGG | + | chr6_1:54403270-54403289 | Msa0888860:intron | 20.0% |
| !! | TACAATACTATATTCATCTT+AGG | + | chr6_1:54403676-54403695 | Msa0888860:CDS | 20.0% |
| !! | AATTCACAATGAAATAATGA+CGG | + | chr6_1:54404446-54404465 | Msa0888860:intron | 20.0% |
| !!! | ATTTTATTGGCAATAATTTG+CGG | + | chr6_1:54404688-54404707 | Msa0888860:intron | 20.0% |
| !!! | ATAGTTGTTTTTGATACTTA+AGG | + | chr6_1:54404752-54404771 | Msa0888860:intron | 20.0% |
| !! | TATGTATTAGTTATATGTTG+TGG | + | chr6_1:54405237-54405256 | Msa0888860:intron | 20.0% |
| !! | TTGTCTTAATCTATGATTAT+GGG | + | chr6_1:54405315-54405334 | Msa0888860:intron | 20.0% |
| !!! | TTGTATTTTAACACTAATCA+TGG | + | chr6_1:54405365-54405384 | Msa0888860:intron | 20.0% |
| !! | AGTTCATATACAAAAATACA+TGG | - | chr6_1:54405565-54405584 | None:intergenic | 20.0% |
| !!! | TATTTTTGTATATGAACTGA+AGG | + | chr6_1:54405567-54405586 | Msa0888860:intron | 20.0% |
| !!! | ATTTTTGTATATGAACTGAA+GGG | + | chr6_1:54405568-54405587 | Msa0888860:intron | 20.0% |
| !! | TATGAACATGAAAAACTATA+CGG | - | chr6_1:54405626-54405645 | None:intergenic | 20.0% |
| !! | TAAAGTTTCTAAGTTATCTT+CGG | + | chr6_1:54405922-54405941 | Msa0888860:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr6_1:54406350-54406369 | Msa0888860:intron | 20.0% |
| !!! | AATTTTCTTTTATAGGACTT+GGG | - | chr6_1:54406425-54406444 | None:intergenic | 20.0% |
| !!! | AAATTTTCTTTTATAGGACT+TGG | - | chr6_1:54406426-54406445 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTCTACAATGAA+GGG | - | chr6_1:54406569-54406588 | None:intergenic | 20.0% |
| !!! | TAAATGTTTTTCTACAATGA+AGG | - | chr6_1:54406570-54406589 | None:intergenic | 20.0% |
| !! | ACTATAAATTTCAAAAGCTT+TGG | - | chr6_1:54406614-54406633 | None:intergenic | 20.0% |
| !! | CATATTTCAATTGCAAATTA+AGG | - | chr6_1:54407049-54407068 | None:intergenic | 20.0% |
| !!! | ATAACATTTTAAAGTGTTTC+TGG | + | chr6_1:54407073-54407092 | Msa0888860:intron | 20.0% |
| !! | AAAATCAATAATCGAGATAT+AGG | - | chr6_1:54407156-54407175 | None:intergenic | 20.0% |
| !!! | TTTGTTTTAACAGATTAAGT+TGG | + | chr6_1:54407197-54407216 | Msa0888860:intron | 20.0% |
| !!! | TTGTTTTAACAGATTAAGTT+GGG | + | chr6_1:54407198-54407217 | Msa0888860:intron | 20.0% |
| !! | TTGTTGGATAGAAATTTATT+AGG | + | chr6_1:54407601-54407620 | Msa0888860:intron | 20.0% |
| !! | TCATAATAATCATTGTTCAT+AGG | - | chr6_1:54407887-54407906 | None:intergenic | 20.0% |
| !! | TCATGATCATAATATTTATC+CGG | - | chr6_1:54407982-54408001 | None:intergenic | 20.0% |
| ! | AAACGTGAAATTGAAATTGA+AGG | - | chr6_1:54401705-54401724 | None:intergenic | 25.0% |
| ! | TAACAAATTTCTTCCTTCTT+CGG | + | chr6_1:54401797-54401816 | Msa0888860:five_prime_UTR | 25.0% |
| ! | TATTCAAGATTATTAGGGTT+AGG | - | chr6_1:54401975-54401994 | None:intergenic | 25.0% |
| ! | TAAAAAATTACCCTATCTTC+AGG | - | chr6_1:54402047-54402066 | None:intergenic | 25.0% |
| !! | TCATTGCTATTAAGATATCA+GGG | - | chr6_1:54402273-54402292 | None:intergenic | 25.0% |
| ! | CTTATTCTTAATGTTGTTCT+TGG | + | chr6_1:54402675-54402694 | Msa0888860:intron | 25.0% |
| !!! | GTTTGTTTTCATGGTTTTTT+TGG | + | chr6_1:54402870-54402889 | Msa0888860:intron | 25.0% |
| !!! | TCGGTTTTAAATTGTATAGA+TGG | + | chr6_1:54402918-54402937 | Msa0888860:intron | 25.0% |
| ! | ATTTAATATTTCGTGTGTAG+CGG | + | chr6_1:54403066-54403085 | Msa0888860:intron | 25.0% |
| ! | AATATACAAAACTCTGCTAT+TGG | + | chr6_1:54403151-54403170 | Msa0888860:intron | 25.0% |
| ! | ATATACAAAACTCTGCTATT+GGG | + | chr6_1:54403152-54403171 | Msa0888860:intron | 25.0% |
| ! | TAAAATTTCGCTACACTATA+GGG | - | chr6_1:54403243-54403262 | None:intergenic | 25.0% |
| ! | TTAAAATTTCGCTACACTAT+AGG | - | chr6_1:54403244-54403263 | None:intergenic | 25.0% |
| ! | TGCTATTGCTCAAAAAATAT+AGG | + | chr6_1:54403322-54403341 | Msa0888860:intron | 25.0% |
| ! | TTAGCACTAAAACTACTATT+TGG | - | chr6_1:54403417-54403436 | None:intergenic | 25.0% |
| !! | TGATTTTTGTGTATATCTGA+AGG | + | chr6_1:54403805-54403824 | Msa0888860:intron | 25.0% |
| !!! | TCATTTTGTTGTTTTATGAC+AGG | + | chr6_1:54404058-54404077 | Msa0888860:intron | 25.0% |
| !! | AATTGAAAAATGGACTTCAT+GGG | - | chr6_1:54404114-54404133 | None:intergenic | 25.0% |
| ! | ATTAACACATTGGTCAATAA+TGG | + | chr6_1:54404248-54404267 | Msa0888860:intron | 25.0% |
| ! | TTAACACATTGGTCAATAAT+GGG | + | chr6_1:54404249-54404268 | Msa0888860:intron | 25.0% |
| ! | ATTCACAATGAAATAATGAC+GGG | + | chr6_1:54404447-54404466 | Msa0888860:intron | 25.0% |
| ! | GTTTGTAGTTTCTGAATATT+TGG | + | chr6_1:54404504-54404523 | Msa0888860:intron | 25.0% |
| !!! | ATCTTCATTTGCTTTTTCTT+TGG | + | chr6_1:54404611-54404630 | Msa0888860:CDS | 25.0% |
| ! | TACTTAAGGAATTATGATAC+TGG | + | chr6_1:54404766-54404785 | Msa0888860:intron | 25.0% |
| !! | TACTTTCTTGATAGTAACAA+TGG | + | chr6_1:54404953-54404972 | Msa0888860:intron | 25.0% |
| ! | GTTGTCTTAATCTATGATTA+TGG | + | chr6_1:54405314-54405333 | Msa0888860:intron | 25.0% |
| !!! | TTTATTGCCTTTTTTAACTG+AGG | - | chr6_1:54405882-54405901 | None:intergenic | 25.0% |
| ! | GATAACTTAGAAACTTTACT+AGG | - | chr6_1:54405920-54405939 | None:intergenic | 25.0% |
| ! | AAAGTTTCTAAGTTATCTTC+GGG | + | chr6_1:54405923-54405942 | Msa0888860:intron | 25.0% |
| ! | ATCTATTTCAAGACTATTCT+CGG | - | chr6_1:54405978-54405997 | None:intergenic | 25.0% |
| !! | TATATAAGCTAAGCTTTTAC+TGG | + | chr6_1:54406043-54406062 | Msa0888860:intron | 25.0% |
| !! | TTTTCAATGACAAATCAATG+TGG | + | chr6_1:54406758-54406777 | Msa0888860:intron | 25.0% |
| !! | TTTTAGTATATACAGGTGTT+CGG | + | chr6_1:54406940-54406959 | Msa0888860:intron | 25.0% |
| ! | ATTTCAATTGCAAATTAAGG+CGG | - | chr6_1:54407046-54407065 | None:intergenic | 25.0% |
| ! | CCTAAACAATAAATCACAAT+AGG | - | chr6_1:54407370-54407389 | None:intergenic | 25.0% |
| ! | CCTATTGTGATTTATTGTTT+AGG | + | chr6_1:54407367-54407386 | Msa0888860:intron | 25.0% |
| !! | GTTCTTTTTCTAATTTTCTC+TGG | + | chr6_1:54407464-54407483 | Msa0888860:intron | 25.0% |
| !! | GCTTTCCTTTTCTTTTTATA+CGG | + | chr6_1:54407515-54407534 | Msa0888860:intron | 25.0% |
| !! | AAGTACCGTATAAAAAGAAA+AGG | - | chr6_1:54407523-54407542 | None:intergenic | 25.0% |
| !! | AACCAAATTTTGTCTTTTGT+TGG | + | chr6_1:54407585-54407604 | Msa0888860:intron | 25.0% |
| ! | ATCCAACAAAAGACAAAATT+TGG | - | chr6_1:54407590-54407609 | None:intergenic | 25.0% |
| !!! | TGTTGATAGTGTTCTGTTTT+GGG | - | chr6_1:54401732-54401751 | None:intergenic | 30.0% |
| !!! | TTGTTGATAGTGTTCTGTTT+TGG | - | chr6_1:54401733-54401752 | None:intergenic | 30.0% |
| AACAAATTTCTTCCTTCTTC+GGG | + | chr6_1:54401798-54401817 | Msa0888860:five_prime_UTR | 30.0% | |
| ! | ATGTTTTCATCCTGAAGATA+GGG | + | chr6_1:54402034-54402053 | Msa0888860:CDS | 30.0% |
| TACTTCAGGGATTAAATTGA+TGG | - | chr6_1:54402226-54402245 | None:intergenic | 30.0% | |
| ! | GTCATTGCTATTAAGATATC+AGG | - | chr6_1:54402274-54402293 | None:intergenic | 30.0% |
| ! | CTATTTTCACAAGCTTTCTT+TGG | - | chr6_1:54402521-54402540 | None:intergenic | 30.0% |
| !!! | CATGAGTTTTGAGACTATTT+AGG | - | chr6_1:54402568-54402587 | None:intergenic | 30.0% |
| TCAAATAAGCCAATACAAAC+AGG | + | chr6_1:54402601-54402620 | Msa0888860:intron | 30.0% | |
| ATCACACTCACTTCAATTTA+GGG | - | chr6_1:54402627-54402646 | None:intergenic | 30.0% | |
| TATCACACTCACTTCAATTT+AGG | - | chr6_1:54402628-54402647 | None:intergenic | 30.0% | |
| CTTAATGTTGTTCTTGGATT+TGG | + | chr6_1:54402681-54402700 | Msa0888860:intron | 30.0% | |
| GCATGTTTGATTACATTGAT+AGG | + | chr6_1:54402773-54402792 | Msa0888860:CDS | 30.0% | |
| !!! | TTCATGGTTTTTTTGGTTGT+TGG | + | chr6_1:54402877-54402896 | Msa0888860:intron | 30.0% |
| !! | GTGACGCTTAATTGATTTTT+CGG | + | chr6_1:54402899-54402918 | Msa0888860:intron | 30.0% |
| !! | TTCCTGCTTCATTTTTATGT+CGG | + | chr6_1:54403179-54403198 | Msa0888860:intron | 30.0% |
| ATGTTCAACTTTAATCTCAC+TGG | + | chr6_1:54403444-54403463 | Msa0888860:intron | 30.0% | |
| TGTTCAACTTTAATCTCACT+GGG | + | chr6_1:54403445-54403464 | Msa0888860:intron | 30.0% | |
| ATCCTTCAAGATTTCTTTGA+AGG | - | chr6_1:54403892-54403911 | None:intergenic | 30.0% | |
| TGATATATACCAAACCATAC+AGG | - | chr6_1:54403937-54403956 | None:intergenic | 30.0% | |
| ! | TTCCAATATTTTGCTACTCT+TGG | + | chr6_1:54403960-54403979 | Msa0888860:intron | 30.0% |
| TTCCAAGAGTAGCAAAATAT+TGG | - | chr6_1:54403965-54403984 | None:intergenic | 30.0% | |
| CTTCAATGCATTATCTATCT+TGG | + | chr6_1:54404015-54404034 | Msa0888860:intron | 30.0% | |
| ! | GATGCTGATATGATTTTGTT+GGG | + | chr6_1:54404080-54404099 | Msa0888860:CDS | 30.0% |
| ! | GAATTGAAAAATGGACTTCA+TGG | - | chr6_1:54404115-54404134 | None:intergenic | 30.0% |
| ! | CCTCTCTAAGAATTGAAAAA+TGG | - | chr6_1:54404124-54404143 | None:intergenic | 30.0% |
| !! | CCATTTTTCAATTCTTAGAG+AGG | + | chr6_1:54404121-54404140 | Msa0888860:CDS | 30.0% |
| TCAGGAGAATTTGATGAAAA+AGG | + | chr6_1:54404368-54404387 | Msa0888860:CDS | 30.0% | |
| TTCACAATGAAATAATGACG+GGG | + | chr6_1:54404448-54404467 | Msa0888860:intron | 30.0% | |
| CATTCAAAATCGATCTCAAA+AGG | - | chr6_1:54404575-54404594 | None:intergenic | 30.0% | |
| !! | GATCGATTTTGAATGCATAT+TGG | + | chr6_1:54404580-54404599 | Msa0888860:CDS | 30.0% |
| ! | AGGTAAGGGTTGTATTTTAT+TGG | + | chr6_1:54404675-54404694 | Msa0888860:intron | 30.0% |
| TACATAGTCTTCAAGTATAC+AGG | + | chr6_1:54404728-54404747 | Msa0888860:intron | 30.0% | |
| ! | TGAAATGCACATTTTTATGC+CGG | + | chr6_1:54404801-54404820 | Msa0888860:intron | 30.0% |
| AGTATACAAGAAGGAACTTA+AGG | + | chr6_1:54404897-54404916 | Msa0888860:CDS | 30.0% | |
| GTATACAAGAAGGAACTTAA+GGG | + | chr6_1:54404898-54404917 | Msa0888860:CDS | 30.0% | |
| ! | ATAGTAACAATGGTGATGAT+TGG | + | chr6_1:54404963-54404982 | Msa0888860:intron | 30.0% |
| AAATTTGGCTGAGAAAAGAA+GGG | - | chr6_1:54405052-54405071 | None:intergenic | 30.0% | |
| AGGAAACAATGATGAGTATT+CGG | + | chr6_1:54405279-54405298 | Msa0888860:intron | 30.0% | |
| ACACTAATCATGGTTCATAA+TGG | + | chr6_1:54405375-54405394 | Msa0888860:intron | 30.0% | |
| AAAGATGCAATTAGATACGA+AGG | - | chr6_1:54405419-54405438 | None:intergenic | 30.0% | |
| CATAAATACGACACAGATAT+TGG | - | chr6_1:54405484-54405503 | None:intergenic | 30.0% | |
| !!! | TTTTTTATAGCTCCAGCTAA+CGG | + | chr6_1:54405706-54405725 | Msa0888860:intron | 30.0% |
| GATGTAAGTTATTCTACTTC+AGG | + | chr6_1:54405995-54406014 | Msa0888860:intron | 30.0% | |
| ! | TTTTACTGGATTATGAGTCT+GGG | + | chr6_1:54406057-54406076 | Msa0888860:intron | 30.0% |
| GACTTGAAAATAAAGCTGAA+GGG | + | chr6_1:54406214-54406233 | Msa0888860:CDS | 30.0% | |
| ACTTGAAAATAAAGCTGAAG+GGG | + | chr6_1:54406215-54406234 | Msa0888860:CDS | 30.0% | |
| AGAACACATATAATTGTGTC+TGG | + | chr6_1:54406301-54406320 | Msa0888860:intron | 30.0% | |
| ! | GGAATTTTGAACTTCATTGA+TGG | + | chr6_1:54406322-54406341 | Msa0888860:intron | 30.0% |
| CGTAAGGAAGGATATATATT+AGG | + | chr6_1:54406389-54406408 | Msa0888860:intron | 30.0% | |
| ! | ATGTAATTTTCCCTGCAATA+TGG | + | chr6_1:54406493-54406512 | Msa0888860:intron | 30.0% |
| ! | TGTAATTTTCCCTGCAATAT+GGG | + | chr6_1:54406494-54406513 | Msa0888860:intron | 30.0% |
| TCACCAGAAAACATTAAAAG+CGG | - | chr6_1:54406538-54406557 | None:intergenic | 30.0% | |
| AGTTTACTGAGTGACATATA+TGG | + | chr6_1:54406631-54406650 | Msa0888860:intron | 30.0% | |
| GTTTACTGAGTGACATATAT+GGG | + | chr6_1:54406632-54406651 | Msa0888860:intron | 30.0% | |
| TTTACTGAGTGACATATATG+GGG | + | chr6_1:54406633-54406652 | Msa0888860:intron | 30.0% | |
| CACCTGTATATACTAAAATC+AGG | - | chr6_1:54406938-54406957 | None:intergenic | 30.0% | |
| !! | TTTTGATTCATGTGAAGATC+TGG | + | chr6_1:54407339-54407358 | Msa0888860:intron | 30.0% |
| TTTGATTCATGTGAAGATCT+GGG | + | chr6_1:54407340-54407359 | Msa0888860:intron | 30.0% | |
| GTGATGCATTATTACTATGA+AGG | + | chr6_1:54407419-54407438 | Msa0888860:CDS | 30.0% | |
| ! | GTATGAATCTTAAGTTGTGT+TGG | + | chr6_1:54407493-54407512 | Msa0888860:intron | 30.0% |
| GAACAATTGTAAAACAAGTC+AGG | - | chr6_1:54407684-54407703 | None:intergenic | 30.0% | |
| CTAAGGAACAATTAACTGAA+AGG | - | chr6_1:54407958-54407977 | None:intergenic | 30.0% | |
| CATAATATTTATCCGGTCTA+AGG | - | chr6_1:54407975-54407994 | None:intergenic | 30.0% | |
| CGTGCATGAAAACTGTTATT+CGG | + | chr6_1:54401771-54401790 | Msa0888860:five_prime_UTR | 35.0% | |
| !! | TTAGGTTTGCTAGAGTCTAT+CGG | - | chr6_1:54401957-54401976 | None:intergenic | 35.0% |
| CTATCTTCAGGATGAAAACA+TGG | - | chr6_1:54402035-54402054 | None:intergenic | 35.0% | |
| ! | CATGTTTTCATCCTGAAGAT+AGG | + | chr6_1:54402033-54402052 | Msa0888860:CDS | 35.0% |
| AATAGCAATGACTGAATCGA+TGG | + | chr6_1:54402282-54402301 | Msa0888860:intron | 35.0% | |
| CTGCAAATAAGATGTTCACT+TGG | - | chr6_1:54402353-54402372 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr6_1:54402591-54402610 | None:intergenic | 35.0% | |
| ! | AATTTAGGGCCTGTTTGTAT+TGG | - | chr6_1:54402613-54402632 | None:intergenic | 35.0% |
| TGAAGTGAGTGTGATAGTTT+AGG | + | chr6_1:54402632-54402651 | Msa0888860:intron | 35.0% | |
| GAAGTGAGTGTGATAGTTTA+GGG | + | chr6_1:54402633-54402652 | Msa0888860:intron | 35.0% | |
| TTGGAGAAACGTGAATGATT+TGG | + | chr6_1:54402700-54402719 | Msa0888860:intron | 35.0% | |
| CATTGATAGGCTGTTTAACA+TGG | + | chr6_1:54402786-54402805 | Msa0888860:CDS | 35.0% | |
| AAGCTTCTCTTTATGGCTAT+TGG | + | chr6_1:54402820-54402839 | Msa0888860:CDS | 35.0% | |
| TGTCTTCTATCTTTGTTCTC+TGG | + | chr6_1:54402845-54402864 | Msa0888860:intron | 35.0% | |
| !! | TCTCTGGTTGTTTGTTTTCA+TGG | + | chr6_1:54402861-54402880 | Msa0888860:intron | 35.0% |
| AACCGACATAAAAATGAAGC+AGG | - | chr6_1:54403184-54403203 | None:intergenic | 35.0% | |
| TATTGCTGAGTAATAGCAGT+TGG | - | chr6_1:54403372-54403391 | None:intergenic | 35.0% | |
| GATAGGCTATTGAAGAATCA+AGG | + | chr6_1:54403535-54403554 | Msa0888860:intron | 35.0% | |
| AACTTTATGTTACTCCAACC+AGG | - | chr6_1:54403714-54403733 | None:intergenic | 35.0% | |
| ! | ATTTCTTTGAAGGCGGATAT+AGG | - | chr6_1:54403882-54403901 | None:intergenic | 35.0% |
| ! | CTTCAAGATTTCTTTGAAGG+CGG | - | chr6_1:54403889-54403908 | None:intergenic | 35.0% |
| ! | GGATGCTGATATGATTTTGT+TGG | + | chr6_1:54404079-54404098 | Msa0888860:intron | 35.0% |
| ! | TGATATGATTTTGTTGGGTC+TGG | + | chr6_1:54404085-54404104 | Msa0888860:CDS | 35.0% |
| TAGGAAAGTCTGACAGAAAA+TGG | - | chr6_1:54404225-54404244 | None:intergenic | 35.0% | |
| ! | ATTTTCTGTCAGACTTTCCT+AGG | + | chr6_1:54404224-54404243 | Msa0888860:intron | 35.0% |
| ! | TTTTCTGTCAGACTTTCCTA+GGG | + | chr6_1:54404225-54404244 | Msa0888860:intron | 35.0% |
| TTTCCTAGGGATTAACACAT+TGG | + | chr6_1:54404238-54404257 | Msa0888860:intron | 35.0% | |
| !! | GGTCAATAATGGGTTATTTC+AGG | + | chr6_1:54404259-54404278 | Msa0888860:intron | 35.0% |
| !! | TTTCAGGTTGTATTTACTCC+TGG | + | chr6_1:54404275-54404294 | Msa0888860:intron | 35.0% |
| AAATGCTTGTGTGGTCAAAT+GGG | + | chr6_1:54404305-54404324 | Msa0888860:CDS | 35.0% | |
| TTCTGAATATTTGGACTCTG+AGG | + | chr6_1:54404513-54404532 | Msa0888860:CDS | 35.0% | |
| TCTGAATATTTGGACTCTGA+GGG | + | chr6_1:54404514-54404533 | Msa0888860:CDS | 35.0% | |
| TCAAAATCGATCTCAAAAGG+AGG | - | chr6_1:54404572-54404591 | None:intergenic | 35.0% | |
| AAGACTATGTACTCTCGTTA+AGG | - | chr6_1:54404719-54404738 | None:intergenic | 35.0% | |
| TATCAGTTGCATAACCTTAC+CGG | - | chr6_1:54404823-54404842 | None:intergenic | 35.0% | |
| AAGAAGGAACTTAAGGGAAT+GGG | + | chr6_1:54404904-54404923 | Msa0888860:CDS | 35.0% | |
| ATATTTGACAAGCGGTAGTA+AGG | + | chr6_1:54404930-54404949 | Msa0888860:CDS | 35.0% | |
| ACACACAAGCTTGATTTAGA+TGG | - | chr6_1:54405014-54405033 | None:intergenic | 35.0% | |
| AATTTGGCTGAGAAAAGAAG+GGG | - | chr6_1:54405051-54405070 | None:intergenic | 35.0% | |
| CAAATTTGGCTGAGAAAAGA+AGG | - | chr6_1:54405053-54405072 | None:intergenic | 35.0% | |
| TATTAGCCAGCAGTATGATT+TGG | + | chr6_1:54405183-54405202 | Msa0888860:intron | 35.0% | |
| ! | TCTTTTCCCCAATGAAAACA+AGG | + | chr6_1:54405434-54405453 | Msa0888860:intron | 35.0% |
| !!! | TCTCTACCTTGTTTTCATTG+GGG | - | chr6_1:54405443-54405462 | None:intergenic | 35.0% |
| !!! | CTCTCTACCTTGTTTTCATT+GGG | - | chr6_1:54405444-54405463 | None:intergenic | 35.0% |
| !!! | TCTCTCTACCTTGTTTTCAT+TGG | - | chr6_1:54405445-54405464 | None:intergenic | 35.0% |
| TTTATGTTGTACCTTTGTGC+TGG | + | chr6_1:54405498-54405517 | Msa0888860:intron | 35.0% | |
| GTTGCAGTTTCTAAATTCCA+CGG | + | chr6_1:54405803-54405822 | Msa0888860:CDS | 35.0% | |
| !!! | TTGCCTTTTTTAACTGAGGT+TGG | - | chr6_1:54405878-54405897 | None:intergenic | 35.0% |
| GCAATAAAGAAGTCTTTGAG+AGG | + | chr6_1:54405894-54405913 | Msa0888860:CDS | 35.0% | |
| AAGTTATTCTACTTCAGGAG+AGG | + | chr6_1:54406000-54406019 | Msa0888860:intron | 35.0% | |
| ! | CTTTTACTGGATTATGAGTC+TGG | + | chr6_1:54406056-54406075 | Msa0888860:intron | 35.0% |
| TTAGTATTCTTCTGCTCTAC+AGG | + | chr6_1:54406174-54406193 | Msa0888860:intron | 35.0% | |
| CGACTTGAAAATAAAGCTGA+AGG | + | chr6_1:54406213-54406232 | Msa0888860:CDS | 35.0% | |
| TCTGATGTGTTCAACTCAAA+AGG | + | chr6_1:54406253-54406272 | Msa0888860:CDS | 35.0% | |
| CATGTAAATTATCCTGCGTA+AGG | + | chr6_1:54406373-54406392 | Msa0888860:intron | 35.0% | |
| TAAATTATCCTGCGTAAGGA+AGG | + | chr6_1:54406377-54406396 | Msa0888860:intron | 35.0% | |
| ATATATATCCTTCCTTACGC+AGG | - | chr6_1:54406388-54406407 | None:intergenic | 35.0% | |
| ACCAGAAAACATTAAAAGCG+GGG | - | chr6_1:54406536-54406555 | None:intergenic | 35.0% | |
| CACCAGAAAACATTAAAAGC+GGG | - | chr6_1:54406537-54406556 | None:intergenic | 35.0% | |
| TTACTGAGTGACATATATGG+GGG | + | chr6_1:54406634-54406653 | Msa0888860:intron | 35.0% | |
| !! | GGCCTGATTTTAGTATATAC+AGG | + | chr6_1:54406933-54406952 | Msa0888860:intron | 35.0% |
| TACGGAAAGATGTTGTAAGT+TGG | + | chr6_1:54407292-54407311 | Msa0888860:intron | 35.0% | |
| ACGGAAAGATGTTGTAAGTT+GGG | + | chr6_1:54407293-54407312 | Msa0888860:intron | 35.0% | |
| TTAGGTCTTAAAATACACCG+AGG | + | chr6_1:54407385-54407404 | Msa0888860:intron | 35.0% | |
| TAGGTCTTAAAATACACCGA+GGG | + | chr6_1:54407386-54407405 | Msa0888860:intron | 35.0% | |
| !! | ACTATGAAGGTGTTTGTTCT+TGG | + | chr6_1:54407432-54407451 | Msa0888860:intron | 35.0% |
| !!! | AGCACGCACTACTATTTTTT+GGG | - | chr6_1:54407650-54407669 | None:intergenic | 35.0% |
| !!! | AAGCACGCACTACTATTTTT+TGG | - | chr6_1:54407651-54407670 | None:intergenic | 35.0% |
| ATTTCTATGTAGATCCTGTG+TGG | + | chr6_1:54407711-54407730 | Msa0888860:intron | 35.0% | |
| AAGAATGTCATATACCACAC+AGG | - | chr6_1:54407728-54407747 | None:intergenic | 35.0% | |
| GTGGTATATGACATTCTTAG+TGG | + | chr6_1:54407730-54407749 | Msa0888860:intron | 35.0% | |
| AATATTCCACACTTCAATGC+TGG | - | chr6_1:54407850-54407869 | None:intergenic | 35.0% | |
| ! | CAGAAGAAAGTGCAAATAGA+CGG | + | chr6_1:54407922-54407941 | Msa0888860:intron | 35.0% |
| CAGTTAATTGTTCCTTAGAC+CGG | + | chr6_1:54407960-54407979 | Msa0888860:intron | 35.0% | |
| CAAAGCTCTTAAATCCAACA+TGG | - | chr6_1:54408042-54408061 | None:intergenic | 35.0% | |
| ! | TAAGAGCTTTGACACTGATT+TGG | + | chr6_1:54408051-54408070 | Msa0888860:intron | 35.0% |
| ! | TAACAGTTTTCATGCACGCA+CGG | - | chr6_1:54401769-54401788 | None:intergenic | 40.0% |
| GCATGAAAACTGTTATTCGG+CGG | + | chr6_1:54401774-54401793 | Msa0888860:five_prime_UTR | 40.0% | |
| GAATGATACCATTCATGTCG+AGG | - | chr6_1:54402010-54402029 | None:intergenic | 40.0% | |
| ATAGGCTGTTTAACATGGTG+CGG | + | chr6_1:54402791-54402810 | Msa0888860:CDS | 40.0% | |
| TGCTAAAGATGCATCTGATG+CGG | + | chr6_1:54402992-54403011 | Msa0888860:CDS | 40.0% | |
| TATAGACCAATGCTGCACAT+TGG | + | chr6_1:54403104-54403123 | Msa0888860:intron | 40.0% | |
| CTGTTGTTCTCTTGTGTGAT+AGG | + | chr6_1:54403518-54403537 | Msa0888860:intron | 40.0% | |
| TGAAGAATCAAGGTTACGAG+AGG | + | chr6_1:54403545-54403564 | Msa0888860:CDS | 40.0% | |
| GTTACGAGAGGAATTTGAGA+GGG | + | chr6_1:54403557-54403576 | Msa0888860:CDS | 40.0% | |
| CAGAAAACTTCCTCCTAAAG+AGG | + | chr6_1:54403584-54403603 | Msa0888860:CDS | 40.0% | |
| ACTTCCTCCTAAAGAGGAAT+CGG | + | chr6_1:54403590-54403609 | Msa0888860:CDS | 40.0% | |
| !! | AAAGTTGCCGATTCCTCTTT+AGG | - | chr6_1:54403600-54403619 | None:intergenic | 40.0% |
| GATTCAAATGTCATCACACC+TGG | + | chr6_1:54403621-54403640 | Msa0888860:CDS | 40.0% | |
| !! | CTTAGGTTGAACAATGATCC+TGG | + | chr6_1:54403693-54403712 | Msa0888860:CDS | 40.0% |
| CTTTCTGATGCAAATGTTCC+CGG | + | chr6_1:54403833-54403852 | Msa0888860:CDS | 40.0% | |
| CGCCTTCAAAGAAATCTTGA+AGG | + | chr6_1:54403887-54403906 | Msa0888860:CDS | 40.0% | |
| TGACCAATGTGTTAATCCCT+AGG | - | chr6_1:54404244-54404263 | None:intergenic | 40.0% | |
| CAAATGCTTGTGTGGTCAAA+TGG | + | chr6_1:54404304-54404323 | Msa0888860:CDS | 40.0% | |
| ACTGTGAAGGAAAGGCTAAA+AGG | + | chr6_1:54404342-54404361 | Msa0888860:CDS | 40.0% | |
| TGTTGCTAAAAAGCCTTTCC+AGG | + | chr6_1:54404400-54404419 | Msa0888860:CDS | 40.0% | |
| TAAAAAGCCTTTCCAGGTCA+GGG | + | chr6_1:54404406-54404425 | Msa0888860:intron | 40.0% | |
| ATTTATCTCAAACCCTGACC+TGG | - | chr6_1:54404421-54404440 | None:intergenic | 40.0% | |
| ! | ATGAAATAATGACGGGGCTT+TGG | + | chr6_1:54404454-54404473 | Msa0888860:intron | 40.0% |
| ! | TGAAATAATGACGGGGCTTT+GGG | + | chr6_1:54404455-54404474 | Msa0888860:intron | 40.0% |
| TCGATCTCAAAAGGAGGATT+AGG | - | chr6_1:54404566-54404585 | None:intergenic | 40.0% | |
| ACTAGAGATTCGTGAGGTAA+GGG | + | chr6_1:54404661-54404680 | Msa0888860:intron | 40.0% | |
| ! | TGCACATTTTTATGCCGGTA+AGG | + | chr6_1:54404806-54404825 | Msa0888860:intron | 40.0% |
| CAAGAAGGAACTTAAGGGAA+TGG | + | chr6_1:54404903-54404922 | Msa0888860:CDS | 40.0% | |
| ATGGGTGGATATTTGACAAG+CGG | + | chr6_1:54404922-54404941 | Msa0888860:CDS | 40.0% | |
| ! | CAGAGTCGAGCATTTTATTC+AGG | + | chr6_1:54405075-54405094 | Msa0888860:CDS | 40.0% |
| ! | GAGCATTTTATTCAGGCTGT+TGG | + | chr6_1:54405082-54405101 | Msa0888860:CDS | 40.0% |
| TGCAACAGGTATGTTGATCT+AGG | + | chr6_1:54405143-54405162 | Msa0888860:intron | 40.0% | |
| GTGGCTGATCTTGAAATAGT+TGG | + | chr6_1:54405256-54405275 | Msa0888860:intron | 40.0% | |
| GCTGATCTTGAAATAGTTGG+AGG | + | chr6_1:54405259-54405278 | Msa0888860:intron | 40.0% | |
| ATGATGAGTATTCGGTATGC+TGG | + | chr6_1:54405287-54405306 | Msa0888860:intron | 40.0% | |
| CACAGATATTGGACATAGAC+TGG | - | chr6_1:54405473-54405492 | None:intergenic | 40.0% | |
| TGTACCTTTGTGCTGGAAAA+TGG | + | chr6_1:54405505-54405524 | Msa0888860:intron | 40.0% | |
| GTACCTTTGTGCTGGAAAAT+GGG | + | chr6_1:54405506-54405525 | Msa0888860:intron | 40.0% | |
| TTATTCTTTCCACCGTTAGC+TGG | - | chr6_1:54405721-54405740 | None:intergenic | 40.0% | |
| AAGCAAGAGGAGATACTGTT+GGG | + | chr6_1:54405756-54405775 | Msa0888860:CDS | 40.0% | |
| AGAAACTGCAACTAGAGACT+CGG | - | chr6_1:54405795-54405814 | None:intergenic | 40.0% | |
| CTGCACCATTTCAACAATCT+GGG | + | chr6_1:54405852-54405871 | Msa0888860:CDS | 40.0% | |
| CTAAGAGTTCTACTTTGAGC+TGG | + | chr6_1:54406124-54406143 | Msa0888860:intron | 40.0% | |
| GATGTGTTCAACTCAAAAGG+TGG | + | chr6_1:54406256-54406275 | Msa0888860:CDS | 40.0% | |
| ! | ACTTCATTGATGGTCGAAGT+AGG | + | chr6_1:54406332-54406351 | Msa0888860:intron | 40.0% |
| !! | TCCCCGCTTTTAATGTTTTC+TGG | + | chr6_1:54406532-54406551 | Msa0888860:intron | 40.0% |
| ! | AGTTGAAGCATCAGCTTTGA+AGG | + | chr6_1:54406685-54406704 | Msa0888860:intron | 40.0% |
| TGTCGTTGCTACAAACAACT+AGG | - | chr6_1:54406785-54406804 | None:intergenic | 40.0% | |
| AGTTGTTTGTAGCAACGACA+AGG | + | chr6_1:54406785-54406804 | Msa0888860:intron | 40.0% | |
| ACGACAAGGCAAATTTCAAG+TGG | + | chr6_1:54406799-54406818 | Msa0888860:intron | 40.0% | |
| AAGTGGTTCAATCAACCTCT+TGG | + | chr6_1:54406816-54406835 | Msa0888860:intron | 40.0% | |
| ! | TGGTAAGCTTTTCCCATCAT+GGG | - | chr6_1:54406864-54406883 | None:intergenic | 40.0% |
| TTGTGTAGGCTTGTAGCATA+TGG | - | chr6_1:54407011-54407030 | None:intergenic | 40.0% | |
| TACAAGCCTACACAATGACT+GGG | + | chr6_1:54407016-54407035 | Msa0888860:intron | 40.0% | |
| !! | CTGGAAAGAGAGGTATTATG+AGG | + | chr6_1:54407230-54407249 | Msa0888860:CDS | 40.0% |
| ! | AAGGTGTTTGTTCTTGGCAA+TGG | + | chr6_1:54407438-54407457 | Msa0888860:intron | 40.0% |
| GTTATCGCAGTTTCTCATCA+TGG | - | chr6_1:54407568-54407587 | None:intergenic | 40.0% | |
| !!! | CACGCACTACTATTTTTTGG+GGG | - | chr6_1:54407648-54407667 | None:intergenic | 40.0% |
| !!! | GCACGCACTACTATTTTTTG+GGG | - | chr6_1:54407649-54407668 | None:intergenic | 40.0% |
| TTGTTCATAGGTTCGTGAGT+TGG | - | chr6_1:54407875-54407894 | None:intergenic | 40.0% | |
| ! | AGAAAGTGCAAATAGACGGT+AGG | + | chr6_1:54407926-54407945 | Msa0888860:intron | 40.0% |
| ! | AACAGTTTTCATGCACGCAC+GGG | - | chr6_1:54401768-54401787 | None:intergenic | 45.0% |
| ATCTGAGTTCCTCTATCCGA+TGG | + | chr6_1:54401827-54401846 | Msa0888860:exon | 45.0% | |
| TCTGAGTTCCTCTATCCGAT+GGG | + | chr6_1:54401828-54401847 | Msa0888860:exon | 45.0% | |
| ACAAGCCATCTGTAAAAGGC+CGG | - | chr6_1:54401858-54401877 | None:intergenic | 45.0% | |
| CTCCACAAGCCATCTGTAAA+AGG | - | chr6_1:54401862-54401881 | None:intergenic | 45.0% | |
| ACCGCATCAACGATAACCAT+CGG | - | chr6_1:54401891-54401910 | None:intergenic | 45.0% | |
| AACCTCTACCTCGACATGAA+TGG | + | chr6_1:54401999-54402018 | Msa0888860:CDS | 45.0% | |
| TACCATTCATGTCGAGGTAG+AGG | - | chr6_1:54402004-54402023 | None:intergenic | 45.0% | |
| AACACCTCCTCAAAAGAGGT+CGG | - | chr6_1:54402748-54402767 | None:intergenic | 45.0% | |
| CTCAAACACCTCCTCAAAAG+AGG | - | chr6_1:54402752-54402771 | None:intergenic | 45.0% | |
| GCCTAGGAAGCTTCTCTTTA+TGG | + | chr6_1:54402813-54402832 | Msa0888860:CDS | 45.0% | |
| GCCATAAAGAGAAGCTTCCT+AGG | - | chr6_1:54402817-54402836 | None:intergenic | 45.0% | |
| !! | TATAGATGGTGTTGCGCCAA+GGG | + | chr6_1:54402932-54402951 | Msa0888860:intron | 45.0% |
| !!! | TGCTGGTTCATTTTAGCCCT+TGG | - | chr6_1:54402951-54402970 | None:intergenic | 45.0% |
| GGGCTAAAATGAACCAGCAA+CGG | + | chr6_1:54402952-54402971 | Msa0888860:CDS | 45.0% | |
| AAATGAACCAGCAACGGTCA+AGG | + | chr6_1:54402958-54402977 | Msa0888860:CDS | 45.0% | |
| ATCAGACCAATGTGCAGCAT+TGG | - | chr6_1:54403113-54403132 | None:intergenic | 45.0% | |
| GGTTACGAGAGGAATTTGAG+AGG | + | chr6_1:54403556-54403575 | Msa0888860:CDS | 45.0% | |
| CACACCTGGAACTGAATTCA+TGG | + | chr6_1:54403635-54403654 | Msa0888860:CDS | 45.0% | |
| GGTTGAACAATGATCCTGGT+TGG | + | chr6_1:54403697-54403716 | Msa0888860:CDS | 45.0% | |
| ATGCAAATGTTCCCGGTGAA+GGG | + | chr6_1:54403840-54403859 | Msa0888860:CDS | 45.0% | |
| AATCTTATGCTCCCCTTCAC+CGG | - | chr6_1:54403855-54403874 | None:intergenic | 45.0% | |
| TACAGGCAATGTCGTGTACA+CGG | - | chr6_1:54403920-54403939 | None:intergenic | 45.0% | |
| TGTACACGACATTGCCTGTA+TGG | + | chr6_1:54403920-54403939 | Msa0888860:CDS | 45.0% | |
| ACGACATTGCCTGTATGGTT+TGG | + | chr6_1:54403925-54403944 | Msa0888860:intron | 45.0% | |
| CACAAGCATTTGTCTTGACC+AGG | - | chr6_1:54404296-54404315 | None:intergenic | 45.0% | |
| GGTCAAGACAAATGCTTGTG+TGG | + | chr6_1:54404296-54404315 | Msa0888860:CDS | 45.0% | |
| GTGTGGTCAAATGGGTCATA+TGG | + | chr6_1:54404313-54404332 | Msa0888860:CDS | 45.0% | |
| GGAAAGGCTAAAAGGAAGTC+AGG | + | chr6_1:54404350-54404369 | Msa0888860:CDS | 45.0% | |
| CTAAAAAGCCTTTCCAGGTC+AGG | + | chr6_1:54404405-54404424 | Msa0888860:intron | 45.0% | |
| ATCTCTAGTGTAGGCATGTG+TGG | - | chr6_1:54404650-54404669 | None:intergenic | 45.0% | |
| ACCTCACGAATCTCTAGTGT+AGG | - | chr6_1:54404659-54404678 | None:intergenic | 45.0% | |
| CACTAGAGATTCGTGAGGTA+AGG | + | chr6_1:54404660-54404679 | Msa0888860:intron | 45.0% | |
| !! | GGTGCGATTAACTTGCTGAT+GGG | + | chr6_1:54404874-54404893 | Msa0888860:CDS | 45.0% |
| ! | GCTGATGGGAGTATACAAGA+AGG | + | chr6_1:54404888-54404907 | Msa0888860:CDS | 45.0% |
| AAGGAACTTAAGGGAATGGG+TGG | + | chr6_1:54404907-54404926 | Msa0888860:CDS | 45.0% | |
| TGCTCGACTCTGCTCAAATT+TGG | - | chr6_1:54405067-54405086 | None:intergenic | 45.0% | |
| GCTGTTGGATCATACGAAGA+TGG | + | chr6_1:54405097-54405116 | Msa0888860:CDS | 45.0% | |
| ! | GTTGCATTCGAGCTCGTTTT+TGG | - | chr6_1:54405129-54405148 | None:intergenic | 45.0% |
| AAAACGAGCTCGAATGCAAC+AGG | + | chr6_1:54405129-54405148 | Msa0888860:CDS | 45.0% | |
| CAACGACCAAATCATACTGC+TGG | - | chr6_1:54405192-54405211 | None:intergenic | 45.0% | |
| !! | CAGCAGTATGATTTGGTCGT+TGG | + | chr6_1:54405190-54405209 | Msa0888860:intron | 45.0% |
| TGAACTGAAGGGAATGTGAG+CGG | + | chr6_1:54405579-54405598 | Msa0888860:intron | 45.0% | |
| TTTATAGCTCCAGCTAACGG+TGG | + | chr6_1:54405709-54405728 | Msa0888860:intron | 45.0% | |
| CAAGCAAGAGGAGATACTGT+TGG | + | chr6_1:54405755-54405774 | Msa0888860:CDS | 45.0% | |
| GAAACTGCAACTAGAGACTC+GGG | - | chr6_1:54405794-54405813 | None:intergenic | 45.0% | |
| CCAGATTGTTGAAATGGTGC+AGG | - | chr6_1:54405854-54405873 | None:intergenic | 45.0% | |
| CCTGCACCATTTCAACAATC+TGG | + | chr6_1:54405851-54405870 | Msa0888860:CDS | 45.0% | |
| GTTGGCCCAGATTGTTGAAA+TGG | - | chr6_1:54405860-54405879 | None:intergenic | 45.0% | |
| GGGCCAACCTCAGTTAAAAA+AGG | + | chr6_1:54405872-54405891 | Msa0888860:CDS | 45.0% | |
| CAACTCAAAAGGTGGTCATG+AGG | + | chr6_1:54406264-54406283 | Msa0888860:CDS | 45.0% | |
| AAAAGGTGGTCATGAGGACA+AGG | + | chr6_1:54406270-54406289 | Msa0888860:CDS | 45.0% | |
| ! | ATTTTCCCTGCAATATGGGC+TGG | + | chr6_1:54406498-54406517 | Msa0888860:intron | 45.0% |
| ! | TTTTCCCTGCAATATGGGCT+GGG | + | chr6_1:54406499-54406518 | Msa0888860:intron | 45.0% |
| ATCAACCTCTTGGCCACATA+AGG | + | chr6_1:54406826-54406845 | Msa0888860:intron | 45.0% | |
| TCAACCTCTTGGCCACATAA+GGG | + | chr6_1:54406827-54406846 | Msa0888860:intron | 45.0% | |
| ! | AGCTTTTCCCATCATGGGAA+TGG | - | chr6_1:54406859-54406878 | None:intergenic | 45.0% |
| ! | CTGGTAAGCTTTTCCCATCA+TGG | - | chr6_1:54406865-54406884 | None:intergenic | 45.0% |
| TGGGTGTGGGATATTGATGA+AGG | + | chr6_1:54406912-54406931 | Msa0888860:intron | 45.0% | |
| ACCTAGACCTTTCTCTGTCT+TGG | + | chr6_1:54406985-54407004 | Msa0888860:intron | 45.0% | |
| CATATGGCCAAGACAGAGAA+AGG | - | chr6_1:54406995-54407014 | None:intergenic | 45.0% | |
| CTACAAGCCTACACAATGAC+TGG | + | chr6_1:54407015-54407034 | Msa0888860:intron | 45.0% | |
| !! | CAGATTAAGTTGGGAGAACC+AGG | + | chr6_1:54407207-54407226 | Msa0888860:intron | 45.0% |
| TAATACCTCTCTTTCCAGCC+TGG | - | chr6_1:54407228-54407247 | None:intergenic | 45.0% | |
| CGTATAGCATCAAGTTCCTC+GGG | - | chr6_1:54407276-54407295 | None:intergenic | 45.0% | |
| CCGTATAGCATCAAGTTCCT+CGG | - | chr6_1:54407277-54407296 | None:intergenic | 45.0% | |
| CCGAGGAACTTGATGCTATA+CGG | + | chr6_1:54407274-54407293 | Msa0888860:CDS | 45.0% | |
| AATACACCGAGGGTCTATGT+TGG | + | chr6_1:54407396-54407415 | Msa0888860:CDS | 45.0% | |
| ATACACCGAGGGTCTATGTT+GGG | + | chr6_1:54407397-54407416 | Msa0888860:CDS | 45.0% | |
| GTTTCTCATCATGGTGAGGA+AGG | - | chr6_1:54407559-54407578 | None:intergenic | 45.0% | |
| ! | CCTTTGATCAAAAGCGTGTC+CGG | + | chr6_1:54407783-54407802 | Msa0888860:intron | 45.0% |
| TAGAGGTTCTGTTCGGACAT+GGG | - | chr6_1:54407827-54407846 | None:intergenic | 45.0% | |
| ATGCTGGTAGAGGTTCTGTT+CGG | - | chr6_1:54407834-54407853 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | + | chr6_1:54408014-54408033 | Msa0888860:intron | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | + | chr6_1:54408015-54408034 | Msa0888860:intron | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | + | chr6_1:54408016-54408035 | Msa0888860:intron | 45.0% | |
| !! | GAGCTTTGACACTGATTTGG+AGG | + | chr6_1:54408054-54408073 | Msa0888860:intron | 45.0% |
| !!! | TTTTTTAAATTTTCTTTTAT+AGG | - | chr6_1:54406432-54406451 | None:intergenic | 5.0% |
| !! | GCACGCACGGGATTTTGTTT+TGG | - | chr6_1:54401756-54401775 | None:intergenic | 50.0% |
| TAAAAGGCCGGAACTCCCAT+CGG | - | chr6_1:54401846-54401865 | None:intergenic | 50.0% | |
| ! | GAGTTCCGGCCTTTTACAGA+TGG | + | chr6_1:54401850-54401869 | Msa0888860:CDS | 50.0% |
| ! | GGCCTTTTACAGATGGCTTG+TGG | + | chr6_1:54401857-54401876 | Msa0888860:CDS | 50.0% |
| GCTTGTGGAGAAATACCCGA+TGG | + | chr6_1:54401872-54401891 | Msa0888860:CDS | 50.0% | |
| CCGCATCAACGATAACCATC+GGG | - | chr6_1:54401890-54401909 | None:intergenic | 50.0% | |
| CCCGATGGTTATCGTTGATG+CGG | + | chr6_1:54401887-54401906 | Msa0888860:CDS | 50.0% | |
| TGATGCGGTCGAAGAAGAAC+CGG | + | chr6_1:54401902-54401921 | Msa0888860:CDS | 50.0% | |
| CCTTCGATTTCGATGACGAC+CGG | - | chr6_1:54401924-54401943 | None:intergenic | 50.0% | |
| ACACCTCCTCAAAAGAGGTC+GGG | - | chr6_1:54402747-54402766 | None:intergenic | 50.0% | |
| TGTTTAACATGGTGCGGCCT+AGG | + | chr6_1:54402797-54402816 | Msa0888860:CDS | 50.0% | |
| !! | GTATAGATGGTGTTGCGCCA+AGG | + | chr6_1:54402931-54402950 | Msa0888860:intron | 50.0% |
| ACGAGAGGAATTTGAGAGGG+AGG | + | chr6_1:54403560-54403579 | Msa0888860:CDS | 50.0% | |
| CGAGAGGAATTTGAGAGGGA+GGG | + | chr6_1:54403561-54403580 | Msa0888860:CDS | 50.0% | |
| !! | GTTGCCGATTCCTCTTTAGG+AGG | - | chr6_1:54403597-54403616 | None:intergenic | 50.0% |
| GCAGCCATGAATTCAGTTCC+AGG | - | chr6_1:54403642-54403661 | None:intergenic | 50.0% | |
| CTGCAGTATGTGTGTCTCAG+TGG | + | chr6_1:54403768-54403787 | Msa0888860:intron | 50.0% | |
| GATGCAAATGTTCCCGGTGA+AGG | + | chr6_1:54403839-54403858 | Msa0888860:CDS | 50.0% | |
| TGCAAATGTTCCCGGTGAAG+GGG | + | chr6_1:54403841-54403860 | Msa0888860:CDS | 50.0% | |
| ATCTTATGCTCCCCTTCACC+GGG | - | chr6_1:54403854-54403873 | None:intergenic | 50.0% | |
| CATATGGCTGCAGACTGTGA+AGG | + | chr6_1:54404329-54404348 | Msa0888860:CDS | 50.0% | |
| TCTCAAACCCTGACCTGGAA+AGG | - | chr6_1:54404416-54404435 | None:intergenic | 50.0% | |
| ! | TTGGACTCTGAGGGAATGTC+TGG | + | chr6_1:54404523-54404542 | Msa0888860:CDS | 50.0% |
| CTAGTGTAGGCATGTGTGGT+AGG | - | chr6_1:54404646-54404665 | None:intergenic | 50.0% | |
| GCCTACACTAGAGATTCGTG+AGG | + | chr6_1:54404655-54404674 | Msa0888860:CDS | 50.0% | |
| !! | GGGTGCGATTAACTTGCTGA+TGG | + | chr6_1:54404873-54404892 | Msa0888860:intron | 50.0% |
| ! | GCACCCATTTTCCAGCACAA+AGG | - | chr6_1:54405512-54405531 | None:intergenic | 50.0% |
| !! | AGAGACTCGGGTTGAACTTG+AGG | - | chr6_1:54405782-54405801 | None:intergenic | 50.0% |
| CTGAATCAAGACGAGAACCG+TGG | - | chr6_1:54405823-54405842 | None:intergenic | 50.0% | |
| TGTTGAAATGGTGCAGGCGT+TGG | - | chr6_1:54405848-54405867 | None:intergenic | 50.0% | |
| TCAACCCAGCCCATATTGCA+GGG | - | chr6_1:54406506-54406525 | None:intergenic | 50.0% | |
| ATCAACCCAGCCCATATTGC+AGG | - | chr6_1:54406507-54406526 | None:intergenic | 50.0% | |
| CAACCTCTTGGCCACATAAG+GGG | + | chr6_1:54406828-54406847 | Msa0888860:intron | 50.0% | |
| TTCCCATCATGGGAATGGCT+AGG | - | chr6_1:54406854-54406873 | None:intergenic | 50.0% | |
| AGAGGGGGGAAAGTTTGATC+TGG | - | chr6_1:54406884-54406903 | None:intergenic | 50.0% | |
| TTTCCCCCCTCTGTGTGTAT+TGG | + | chr6_1:54406892-54406911 | Msa0888860:intron | 50.0% | |
| TTCCCCCCTCTGTGTGTATT+GGG | + | chr6_1:54406893-54406912 | Msa0888860:intron | 50.0% | |
| ACACCCAATACACACAGAGG+GGG | - | chr6_1:54406899-54406918 | None:intergenic | 50.0% | |
| CACACCCAATACACACAGAG+GGG | - | chr6_1:54406900-54406919 | None:intergenic | 50.0% | |
| CCACACCCAATACACACAGA+GGG | - | chr6_1:54406901-54406920 | None:intergenic | 50.0% | |
| CCTCTGTGTGTATTGGGTGT+GGG | + | chr6_1:54406899-54406918 | Msa0888860:intron | 50.0% | |
| GCCAAGACAGAGAAAGGTCT+AGG | - | chr6_1:54406989-54407008 | None:intergenic | 50.0% | |
| GGCAATCCCAGTCATTGTGT+AGG | - | chr6_1:54407025-54407044 | None:intergenic | 50.0% | |
| !! | TTAAGTTGGGAGAACCAGGC+TGG | + | chr6_1:54407211-54407230 | Msa0888860:CDS | 50.0% |
| AATTTCTGCTCAGACTCCCG+AGG | + | chr6_1:54407257-54407276 | Msa0888860:CDS | 50.0% | |
| CATCACCCAACATAGACCCT+CGG | - | chr6_1:54407405-54407424 | None:intergenic | 50.0% | |
| TCTCATCATGGTGAGGAAGG+TGG | - | chr6_1:54407556-54407575 | None:intergenic | 50.0% | |
| CGCAGTTTCTCATCATGGTG+AGG | - | chr6_1:54407563-54407582 | None:intergenic | 50.0% | |
| ! | CCGGACACGCTTTTGATCAA+AGG | - | chr6_1:54407786-54407805 | None:intergenic | 50.0% |
| GTAGAGGTTCTGTTCGGACA+TGG | - | chr6_1:54407828-54407847 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | - | chr6_1:54407844-54407863 | None:intergenic | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | + | chr6_1:54407841-54407860 | Msa0888860:intron | 50.0% |
| CTTCCGGTGGAAGTGAACAT+GGG | + | chr6_1:54408111-54408130 | Msa0888860:CDS | 50.0% | |
| TCAGATCGACGACCCGAAGA+AGG | - | chr6_1:54401813-54401832 | None:intergenic | 55.0% | |
| CCTCTATCCGATGGGAGTTC+CGG | + | chr6_1:54401836-54401855 | Msa0888860:exon | 55.0% | |
| CCGGTCGTCATCGAAATCGA+AGG | + | chr6_1:54401921-54401940 | Msa0888860:CDS | 55.0% | |
| ACCTCCTCAAAAGAGGTCGG+GGG | - | chr6_1:54402745-54402764 | None:intergenic | 55.0% | |
| CACCTCCTCAAAAGAGGTCG+GGG | - | chr6_1:54402746-54402765 | None:intergenic | 55.0% | |
| TGAACCAGCAACGGTCAAGG+CGG | + | chr6_1:54402961-54402980 | Msa0888860:CDS | 55.0% | |
| TAAACCGCCTTGACCGTTGC+TGG | - | chr6_1:54402968-54402987 | None:intergenic | 55.0% | |
| GGCTGCAGACTGTGAAGGAA+AGG | + | chr6_1:54404334-54404353 | Msa0888860:CDS | 55.0% | |
| CGTCAGCAGTCACAAGCAAG+AGG | + | chr6_1:54405743-54405762 | Msa0888860:CDS | 55.0% | |
| GAATGGCTAGGCCCCTTATG+TGG | - | chr6_1:54406842-54406861 | None:intergenic | 55.0% | |
| GGCCTAGCCATTCCCATGAT+GGG | + | chr6_1:54406849-54406868 | Msa0888860:intron | 55.0% | |
| CACCCAATACACACAGAGGG+GGG | - | chr6_1:54406898-54406917 | None:intergenic | 55.0% | |
| CCCTCTGTGTGTATTGGGTG+TGG | + | chr6_1:54406898-54406917 | Msa0888860:intron | 55.0% | |
| CCCACACCCAATACACACAG+AGG | - | chr6_1:54406902-54406921 | None:intergenic | 55.0% | |
| GAGAACCAGGCTGGAAAGAG+AGG | + | chr6_1:54407220-54407239 | Msa0888860:CDS | 55.0% | |
| GGTTCTGTTCGGACATGGGT+CGG | - | chr6_1:54407823-54407842 | None:intergenic | 55.0% | |
| !! | CTGATTTGGAGGCAGTGACG+TGG | + | chr6_1:54408065-54408084 | Msa0888860:intron | 55.0% |
| TGACGTGGAGCTTCTTCGTG+TGG | + | chr6_1:54408080-54408099 | Msa0888860:CDS | 55.0% | |
| GAGCTTCTTCGTGTGGCTGA+CGG | + | chr6_1:54408087-54408106 | Msa0888860:CDS | 55.0% | |
| AGCTTCTTCGTGTGGCTGAC+GGG | + | chr6_1:54408088-54408107 | Msa0888860:CDS | 55.0% | |
| GCTTCCGGTGGAAGTGAACA+TGG | + | chr6_1:54408110-54408129 | Msa0888860:CDS | 55.0% | |
| CGTCCCATGTTCACTTCCAC+CGG | - | chr6_1:54408117-54408136 | None:intergenic | 55.0% | |
| TGGGCAGTAGCACTACATGG+CGG | - | chr6_1:54408146-54408165 | None:intergenic | 55.0% | |
| CCGGAACTCCCATCGGATAG+AGG | - | chr6_1:54401839-54401858 | None:intergenic | 60.0% | |
| TCCTCAAAAGAGGTCGGGGG+TGG | - | chr6_1:54402742-54402761 | None:intergenic | 60.0% | |
| !! | ACCCCCGACCTCTTTTGAGG+AGG | + | chr6_1:54402741-54402760 | Msa0888860:CDS | 60.0% |
| AGGCCCCTTATGTGGCCAAG+AGG | - | chr6_1:54406834-54406853 | None:intergenic | 60.0% | |
| GGGCCTAGCCATTCCCATGA+TGG | + | chr6_1:54406848-54406867 | Msa0888860:intron | 60.0% | |
| !! | GACATGGGTCGGTGTCGTGT+CGG | - | chr6_1:54407812-54407831 | None:intergenic | 60.0% |
| GACGTCTAGAGGGGCCATGT+TGG | + | chr6_1:54408025-54408044 | Msa0888860:intron | 60.0% | |
| ! | GCCATGTAGTGCTACTGCCC+AGG | + | chr6_1:54408145-54408164 | Msa0888860:CDS | 60.0% |
| GCCTGGGCAGTAGCACTACA+TGG | - | chr6_1:54408149-54408168 | None:intergenic | 60.0% | |
| ! | GCCACCCCCGACCTCTTTTG+AGG | + | chr6_1:54402738-54402757 | Msa0888860:intron | 65.0% |
| !! | GTCGGTGTCGTGTCGGACAC+CGG | - | chr6_1:54407805-54407824 | None:intergenic | 65.0% |
| !! | TCGTGTGGCTGACGGGCTTC+CGG | + | chr6_1:54408095-54408114 | Msa0888860:CDS | 65.0% |
| GTAGCACTACATGGCGGCGC+TGG | - | chr6_1:54408140-54408159 | None:intergenic | 65.0% | |
| !! | TGTGGCTGACGGGCTTCCGG+TGG | + | chr6_1:54408098-54408117 | Msa0888860:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 54401690 | 54408182 | 54401690 | ID=Msa0888860;Name=Msa0888860 |
| chr6_1 | mRNA | 54401690 | 54408182 | 54401690 | ID=Msa0888860-mRNA-1;Parent=Msa0888860;Name=Msa0888860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=156|0.73|0.62|0.93|0.66|0.68|16|0|617 |
| chr6_1 | exon | 54401690 | 54402055 | 54401690 | ID=Msa0888860-mRNA-1:exon:10923;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54402739 | 54402841 | 54402739 | ID=Msa0888860-mRNA-1:exon:10924;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54402937 | 54403013 | 54402937 | ID=Msa0888860-mRNA-1:exon:10925;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54403540 | 54403730 | 54403540 | ID=Msa0888860-mRNA-1:exon:10926;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54403827 | 54403941 | 54403827 | ID=Msa0888860-mRNA-1:exon:10927;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54404080 | 54404142 | 54404080 | ID=Msa0888860-mRNA-1:exon:10928;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54404281 | 54404421 | 54404281 | ID=Msa0888860-mRNA-1:exon:10929;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54404512 | 54404676 | 54404512 | ID=Msa0888860-mRNA-1:exon:10930;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54404874 | 54404951 | 54404874 | ID=Msa0888860-mRNA-1:exon:10931;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54405064 | 54405150 | 54405064 | ID=Msa0888860-mRNA-1:exon:10932;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54405716 | 54405925 | 54405716 | ID=Msa0888860-mRNA-1:exon:10933;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54405935 | 54405997 | 54405935 | ID=Msa0888860-mRNA-1:exon:10934;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54406196 | 54406291 | 54406196 | ID=Msa0888860-mRNA-1:exon:10935;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54407210 | 54407305 | 54407210 | ID=Msa0888860-mRNA-1:exon:10936;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54407389 | 54407440 | 54407389 | ID=Msa0888860-mRNA-1:exon:10937;Parent=Msa0888860-mRNA-1 |
| chr6_1 | exon | 54408076 | 54408182 | 54408076 | ID=Msa0888860-mRNA-1:exon:10938;Parent=Msa0888860-mRNA-1 |
| chr6_1 | five_prime_UTR | 54401690 | 54401845 | 54401690 | ID=Msa0888860-mRNA-1:five_prime_utr;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54401846 | 54402055 | 54401846 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54402739 | 54402841 | 54402739 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54402937 | 54403013 | 54402937 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54403540 | 54403730 | 54403540 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54403827 | 54403941 | 54403827 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54404080 | 54404142 | 54404080 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54404281 | 54404421 | 54404281 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54404512 | 54404676 | 54404512 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54404874 | 54404951 | 54404874 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54405064 | 54405150 | 54405064 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54405716 | 54405925 | 54405716 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54405935 | 54405997 | 54405935 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54406196 | 54406291 | 54406196 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54407210 | 54407305 | 54407210 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54407389 | 54407440 | 54407389 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| chr6_1 | CDS | 54408076 | 54408182 | 54408076 | ID=Msa0888860-mRNA-1:cds;Parent=Msa0888860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
