Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889310 | KEH27018.1 | 70.635 | 126 | 35 | 1 | 16 | 139 | 1 | 126 | 2.56e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889310 | sp|P42849|UMEC_ARMRU | 47.573 | 103 | 53 | 1 | 40 | 142 | 1 | 102 | 5.14e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889310 | A0A072UD60 | 70.635 | 126 | 35 | 1 | 16 | 139 | 1 | 126 | 1.23e-54 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0354800 | Msa0889310 | -0.831755 | 1.394496e-55 | -8.615850e-47 |
| Msa0536220 | Msa0889310 | 0.801430 | 9.039562e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889310 | MtrunA17_Chr6g0483981 | 70.635 | 126 | 35 | 1 | 16 | 139 | 1 | 126 | 1.93e-54 | 179 |
| Msa0889310 | MtrunA17_Chr4g0064041 | 62.687 | 134 | 48 | 2 | 16 | 147 | 1 | 134 | 5.54e-51 | 166 |
| Msa0889310 | MtrunA17_Chr4g0064041 | 55.000 | 100 | 45 | 0 | 41 | 140 | 190 | 289 | 3.27e-34 | 122 |
| Msa0889310 | MtrunA17_Chr2g0306461 | 46.154 | 117 | 61 | 2 | 23 | 139 | 9 | 123 | 7.17e-28 | 102 |
| Msa0889310 | MtrunA17_Chr5g0394321 | 37.903 | 124 | 75 | 1 | 24 | 147 | 8 | 129 | 1.70e-25 | 95.5 |
| Msa0889310 | MtrunA17_Chr4g0033131 | 35.833 | 120 | 75 | 1 | 23 | 140 | 9 | 128 | 2.44e-24 | 92.4 |
| Msa0889310 | MtrunA17_Chr4g0033531 | 35.833 | 120 | 75 | 1 | 23 | 140 | 9 | 128 | 2.44e-24 | 92.4 |
| Msa0889310 | MtrunA17_Chr1g0205701 | 35.200 | 125 | 77 | 2 | 21 | 145 | 6 | 126 | 7.31e-24 | 91.7 |
| Msa0889310 | MtrunA17_Chr3g0132441 | 40.336 | 119 | 66 | 3 | 21 | 139 | 5 | 118 | 3.26e-23 | 89.7 |
| Msa0889310 | MtrunA17_Chr2g0301431 | 39.167 | 120 | 63 | 4 | 23 | 140 | 12 | 123 | 4.99e-22 | 85.1 |
| Msa0889310 | MtrunA17_Chr8g0335531 | 40.650 | 123 | 66 | 4 | 23 | 143 | 5 | 122 | 1.23e-21 | 85.9 |
| Msa0889310 | MtrunA17_Chr3g0132431 | 37.607 | 117 | 68 | 3 | 21 | 137 | 5 | 116 | 5.84e-20 | 81.3 |
| Msa0889310 | MtrunA17_Chr8g0335571 | 39.024 | 123 | 68 | 3 | 23 | 143 | 5 | 122 | 6.46e-20 | 81.6 |
| Msa0889310 | MtrunA17_Chr3g0132701 | 36.364 | 121 | 72 | 2 | 20 | 139 | 4 | 120 | 9.64e-20 | 81.6 |
| Msa0889310 | MtrunA17_Chr3g0132511 | 36.667 | 120 | 71 | 2 | 21 | 139 | 5 | 120 | 1.17e-19 | 81.3 |
| Msa0889310 | MtrunA17_Chr2g0323021 | 44.304 | 79 | 43 | 1 | 62 | 140 | 42 | 119 | 1.52e-19 | 81.3 |
| Msa0889310 | MtrunA17_Chr8g0380901 | 37.288 | 118 | 64 | 3 | 23 | 140 | 12 | 119 | 4.13e-19 | 77.4 |
| Msa0889310 | MtrunA17_Chr8g0380711 | 35.294 | 102 | 60 | 1 | 39 | 140 | 25 | 120 | 6.96e-19 | 77.0 |
| Msa0889310 | MtrunA17_Chr7g0253631 | 36.885 | 122 | 72 | 3 | 20 | 140 | 3 | 120 | 7.81e-19 | 79.7 |
| Msa0889310 | MtrunA17_Chr1g0177341 | 34.454 | 119 | 70 | 3 | 23 | 140 | 9 | 120 | 1.24e-18 | 77.0 |
| Msa0889310 | MtrunA17_Chr1g0177331 | 34.454 | 119 | 70 | 3 | 23 | 140 | 9 | 120 | 1.24e-18 | 77.0 |
| Msa0889310 | MtrunA17_Chr7g0253681 | 39.216 | 102 | 57 | 2 | 39 | 139 | 24 | 121 | 1.30e-18 | 77.4 |
| Msa0889310 | MtrunA17_Chr7g0253641 | 36.441 | 118 | 70 | 2 | 24 | 140 | 7 | 120 | 4.24e-18 | 77.4 |
| Msa0889310 | MtrunA17_Chr7g0253761 | 35.897 | 117 | 70 | 2 | 24 | 139 | 7 | 119 | 4.46e-18 | 76.3 |
| Msa0889310 | MtrunA17_Chr7g0253701 | 36.937 | 111 | 65 | 2 | 30 | 139 | 14 | 120 | 5.74e-18 | 75.5 |
| Msa0889310 | MtrunA17_Chr7g0253671 | 36.937 | 111 | 65 | 2 | 30 | 139 | 14 | 120 | 5.74e-18 | 75.5 |
| Msa0889310 | MtrunA17_Chr4g0064031 | 38.318 | 107 | 62 | 4 | 39 | 142 | 25 | 130 | 1.24e-17 | 74.7 |
| Msa0889310 | MtrunA17_Chr7g0253731 | 32.759 | 116 | 74 | 1 | 20 | 135 | 3 | 114 | 1.47e-17 | 74.7 |
| Msa0889310 | MtrunA17_Chr3g0125761 | 33.051 | 118 | 72 | 2 | 23 | 140 | 14 | 124 | 5.32e-17 | 72.0 |
| Msa0889310 | MtrunA17_Chr3g0125791 | 35.644 | 101 | 58 | 2 | 39 | 139 | 30 | 123 | 7.99e-17 | 71.6 |
| Msa0889310 | MtrunA17_Chr1g0196801 | 40.594 | 101 | 55 | 2 | 39 | 139 | 20 | 115 | 2.23e-16 | 72.0 |
| Msa0889310 | MtrunA17_Chr8g0387804 | 30.769 | 117 | 80 | 1 | 23 | 139 | 10 | 125 | 9.55e-16 | 68.9 |
| Msa0889310 | MtrunA17_Chr1g0211101 | 31.933 | 119 | 76 | 2 | 23 | 140 | 14 | 128 | 1.20e-15 | 70.1 |
| Msa0889310 | MtrunA17_Chr2g0331181 | 35.922 | 103 | 63 | 2 | 39 | 140 | 24 | 124 | 2.41e-15 | 69.3 |
| Msa0889310 | MtrunA17_Chr1g0188981 | 34.343 | 99 | 64 | 1 | 42 | 139 | 29 | 127 | 7.93e-15 | 68.2 |
| Msa0889310 | MtrunA17_Chr1g0150131 | 32.231 | 121 | 80 | 2 | 26 | 144 | 8 | 128 | 1.04e-14 | 67.8 |
| Msa0889310 | MtrunA17_Chr3g0132411 | 35.922 | 103 | 61 | 2 | 37 | 139 | 60 | 157 | 1.59e-14 | 67.0 |
| Msa0889310 | MtrunA17_Chr6g0458331 | 36.082 | 97 | 59 | 2 | 42 | 137 | 37 | 131 | 3.63e-14 | 65.9 |
| Msa0889310 | MtrunA17_Chr6g0481491 | 30.172 | 116 | 76 | 2 | 24 | 139 | 10 | 120 | 4.02e-14 | 66.6 |
| Msa0889310 | MtrunA17_Chr4g0041811 | 29.565 | 115 | 78 | 1 | 25 | 139 | 18 | 129 | 5.18e-14 | 66.6 |
| Msa0889310 | MtrunA17_Chr3g0136871 | 32.000 | 100 | 67 | 1 | 39 | 137 | 24 | 123 | 1.14e-12 | 62.0 |
| Msa0889310 | MtrunA17_Chr8g0360371 | 32.231 | 121 | 78 | 2 | 23 | 143 | 7 | 123 | 3.38e-12 | 62.4 |
| Msa0889310 | MtrunA17_Chr4g0062341 | 31.304 | 115 | 75 | 2 | 27 | 139 | 17 | 129 | 6.33e-12 | 60.1 |
| Msa0889310 | MtrunA17_Chr4g0062311 | 31.304 | 115 | 75 | 2 | 27 | 139 | 17 | 129 | 6.33e-12 | 60.1 |
| Msa0889310 | MtrunA17_Chr4g0040291 | 32.075 | 106 | 70 | 1 | 39 | 144 | 22 | 125 | 2.72e-11 | 58.5 |
| Msa0889310 | MtrunA17_Chr2g0324721 | 32.673 | 101 | 66 | 1 | 39 | 139 | 24 | 122 | 6.54e-11 | 57.8 |
| Msa0889310 | MtrunA17_Chr4g0073901 | 26.400 | 125 | 91 | 1 | 16 | 139 | 3 | 127 | 8.49e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889310 | AT2G32300.2 | 39.855 | 138 | 79 | 1 | 9 | 146 | 23 | 156 | 6.07e-28 | 105 |
| Msa0889310 | AT5G20230.1 | 45.370 | 108 | 58 | 1 | 40 | 147 | 23 | 129 | 5.42e-27 | 100 |
| Msa0889310 | AT2G32300.1 | 41.935 | 124 | 68 | 1 | 23 | 146 | 7 | 126 | 2.34e-26 | 100 |
| Msa0889310 | AT2G31050.1 | 45.000 | 120 | 62 | 2 | 21 | 139 | 7 | 123 | 7.64e-25 | 94.7 |
| Msa0889310 | AT5G26330.1 | 37.600 | 125 | 76 | 1 | 23 | 147 | 5 | 127 | 3.95e-22 | 87.4 |
| Msa0889310 | AT2G25060.1 | 41.322 | 121 | 67 | 2 | 24 | 143 | 16 | 133 | 5.90e-22 | 86.7 |
| Msa0889310 | AT3G20570.1 | 34.646 | 127 | 79 | 2 | 16 | 139 | 1 | 126 | 1.59e-21 | 86.3 |
| Msa0889310 | AT3G17675.1 | 35.593 | 118 | 72 | 1 | 23 | 140 | 13 | 126 | 3.62e-21 | 83.2 |
| Msa0889310 | AT2G26720.1 | 40.000 | 115 | 65 | 3 | 26 | 139 | 12 | 123 | 7.29e-21 | 84.7 |
| Msa0889310 | AT3G60270.1 | 39.815 | 108 | 60 | 2 | 39 | 146 | 23 | 125 | 7.65e-20 | 81.6 |
| Msa0889310 | AT4G31840.1 | 37.815 | 119 | 72 | 2 | 23 | 139 | 7 | 125 | 6.16e-18 | 76.3 |
| Msa0889310 | AT1G79800.1 | 34.146 | 123 | 77 | 3 | 23 | 144 | 16 | 135 | 6.03e-17 | 73.9 |
| Msa0889310 | AT1G64640.1 | 31.452 | 124 | 83 | 2 | 15 | 137 | 5 | 127 | 3.31e-16 | 72.0 |
| Msa0889310 | AT5G53870.2 | 36.364 | 121 | 72 | 2 | 20 | 137 | 5 | 123 | 4.94e-15 | 70.9 |
| Msa0889310 | AT5G53870.1 | 36.364 | 121 | 72 | 2 | 20 | 137 | 5 | 123 | 6.57e-15 | 70.9 |
| Msa0889310 | AT2G02850.1 | 34.483 | 116 | 66 | 3 | 24 | 139 | 21 | 126 | 6.71e-15 | 67.0 |
| Msa0889310 | AT5G25090.1 | 37.895 | 95 | 59 | 0 | 45 | 139 | 30 | 124 | 9.35e-15 | 68.2 |
| Msa0889310 | AT5G07475.1 | 37.255 | 102 | 59 | 2 | 39 | 140 | 27 | 123 | 1.23e-14 | 67.8 |
| Msa0889310 | AT1G72230.1 | 40.000 | 80 | 47 | 1 | 60 | 139 | 37 | 115 | 1.90e-14 | 67.4 |
| Msa0889310 | AT1G45063.2 | 36.364 | 99 | 60 | 2 | 42 | 139 | 149 | 245 | 2.56e-14 | 68.2 |
| Msa0889310 | AT1G45063.2 | 31.897 | 116 | 75 | 3 | 25 | 139 | 12 | 124 | 5.66e-12 | 62.0 |
| Msa0889310 | AT4G30590.1 | 31.092 | 119 | 80 | 2 | 23 | 139 | 8 | 126 | 3.25e-14 | 66.6 |
| Msa0889310 | AT4G28365.1 | 33.884 | 121 | 77 | 3 | 23 | 143 | 11 | 128 | 4.69e-14 | 66.6 |
| Msa0889310 | AT1G45063.1 | 36.364 | 99 | 60 | 2 | 42 | 139 | 149 | 245 | 5.10e-14 | 68.2 |
| Msa0889310 | AT1G45063.1 | 31.897 | 116 | 75 | 3 | 25 | 139 | 12 | 124 | 1.03e-11 | 61.6 |
| Msa0889310 | AT2G44790.1 | 35.398 | 113 | 62 | 4 | 33 | 143 | 23 | 126 | 1.14e-13 | 65.5 |
| Msa0889310 | AT3G60280.1 | 38.614 | 101 | 57 | 2 | 39 | 139 | 21 | 116 | 1.74e-13 | 65.5 |
| Msa0889310 | AT4G27520.1 | 31.624 | 117 | 78 | 1 | 27 | 143 | 16 | 130 | 8.01e-13 | 64.7 |
| Msa0889310 | AT2G23990.1 | 29.565 | 115 | 79 | 2 | 27 | 139 | 12 | 126 | 2.46e-12 | 62.0 |
| Msa0889310 | AT1G22480.1 | 33.058 | 121 | 66 | 3 | 23 | 143 | 10 | 115 | 3.42e-12 | 61.2 |
| Msa0889310 | AT4G32490.1 | 30.392 | 102 | 69 | 1 | 42 | 143 | 31 | 130 | 4.91e-12 | 61.6 |
Find 35 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCATATGTACCTTTCC+TGG | 0.302641 | 6_1:-56411092 | Msa0889310:CDS |
| TTGCTACGGATCCATGAAAA+AGG | 0.306137 | 6_1:+56411446 | None:intergenic |
| TTTCCTGGTCACTGTTCTGC+TGG | 0.401958 | 6_1:-56411077 | Msa0889310:CDS |
| TAGACTTCGGATCCCTTGGC+TGG | 0.402341 | 6_1:+56411385 | None:intergenic |
| GATCCGAAGTCTATGCCAAC+TGG | 0.420089 | 6_1:-56411375 | Msa0889310:CDS |
| GGCATAGACTTCGGATCCCT+TGG | 0.433725 | 6_1:+56411381 | None:intergenic |
| TTCGGATCCCTTGGCTGGGA+TGG | 0.450055 | 6_1:+56411390 | None:intergenic |
| ACCATTCATGTTGCTTGCTA+TGG | 0.457665 | 6_1:+56411498 | None:intergenic |
| CTTCACCGTGGGTGATGACA+TGG | 0.470735 | 6_1:-56411419 | Msa0889310:CDS |
| CCAGCGACGGTGACTCTCAC+CGG | 0.512034 | 6_1:-56411128 | Msa0889310:CDS |
| TTGTTCTTACAAGTAATAAG+TGG | 0.513067 | 6_1:+56411532 | None:intergenic |
| GGGCTGGACCATCCCAGCCA+AGG | 0.526470 | 6_1:-56411398 | Msa0889310:CDS |
| ACGGTGACTCTCACCGGAGT+AGG | 0.531650 | 6_1:-56411122 | Msa0889310:CDS |
| TTCACTGTAGGTGACAATCT+TGG | 0.533049 | 6_1:-56411337 | Msa0889310:intron |
| TTCAAAACACGATGTGGCAA+AGG | 0.539358 | 6_1:-56411213 | Msa0889310:CDS |
| TCAGCTTTCGATAGTTGCAA+TGG | 0.542896 | 6_1:-56411182 | Msa0889310:CDS |
| CCGGTGAGAGTCACCGTCGC+TGG | 0.543264 | 6_1:+56411128 | None:intergenic |
| CCGTGGGTGATGACATGGGC+TGG | 0.546502 | 6_1:-56411414 | Msa0889310:CDS |
| CGGTGACTCTCACCGGAGTA+GGG | 0.549165 | 6_1:-56411121 | Msa0889310:CDS |
| GGCTGGACCATCCCAGCCAA+GGG | 0.550523 | 6_1:-56411397 | Msa0889310:CDS |
| GAAATATTGTTTCCCTACTC+CGG | 0.551702 | 6_1:+56411109 | None:intergenic |
| ACCATAGCAAGCAACATGAA+TGG | 0.562926 | 6_1:-56411499 | Msa0889310:CDS |
| TGCCCAGTTGGCATAGACTT+CGG | 0.568566 | 6_1:+56411372 | None:intergenic |
| AGCAGAACAGTGACCAGGAA+AGG | 0.575490 | 6_1:+56411079 | None:intergenic |
| CATGTCATCACCCACGGTGA+AGG | 0.580846 | 6_1:+56411420 | None:intergenic |
| AGACTTCGGATCCCTTGGCT+GGG | 0.581146 | 6_1:+56411386 | None:intergenic |
| CATACTAAAACCTTCACTGT+AGG | 0.599735 | 6_1:-56411349 | Msa0889310:CDS |
| TGCTAATTCAAAACACGATG+TGG | 0.601535 | 6_1:-56411219 | Msa0889310:CDS |
| CCAGCCCATGTCATCACCCA+CGG | 0.603422 | 6_1:+56411414 | None:intergenic |
| CAATGGAACAAACGCACTTG+CGG | 0.604289 | 6_1:-56411165 | Msa0889310:CDS |
| TGACCAGCAGAACAGTGACC+AGG | 0.608525 | 6_1:+56411074 | None:intergenic |
| AAGATTGTCACCTACAGTGA+AGG | 0.614101 | 6_1:+56411339 | None:intergenic |
| ATCCGAAGTCTATGCCAACT+GGG | 0.618490 | 6_1:-56411374 | Msa0889310:CDS |
| CATAACAAACACTCCAGCGA+CGG | 0.643148 | 6_1:-56411141 | Msa0889310:CDS |
| TTCACCGTGGGTGATGACAT+GGG | 0.693895 | 6_1:-56411418 | Msa0889310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGTTCTTACAAGTAATAAG+TGG | + | chr6_1:56411049-56411068 | None:intergenic | 25.0% |
| TATTTCATATGTACCTTTCC+TGG | - | chr6_1:56411486-56411505 | Msa0889310:CDS | 30.0% | |
| !! | TGTTTTTGCGTTGCTTGTTA+TGG | - | chr6_1:56411105-56411124 | Msa0889310:CDS | 35.0% |
| CATACTAAAACCTTCACTGT+AGG | - | chr6_1:56411229-56411248 | Msa0889310:CDS | 35.0% | |
| TGCTAATTCAAAACACGATG+TGG | - | chr6_1:56411359-56411378 | Msa0889310:CDS | 35.0% | |
| GAAATATTGTTTCCCTACTC+CGG | + | chr6_1:56411472-56411491 | None:intergenic | 35.0% | |
| ACCATAGCAAGCAACATGAA+TGG | - | chr6_1:56411079-56411098 | Msa0889310:CDS | 40.0% | |
| ! | ACCATTCATGTTGCTTGCTA+TGG | + | chr6_1:56411083-56411102 | None:intergenic | 40.0% |
| !!! | GTTATGGCTAGCCTTTTTCA+TGG | - | chr6_1:56411121-56411140 | Msa0889310:CDS | 40.0% |
| TTGCTACGGATCCATGAAAA+AGG | + | chr6_1:56411135-56411154 | None:intergenic | 40.0% | |
| AAGATTGTCACCTACAGTGA+AGG | + | chr6_1:56411242-56411261 | None:intergenic | 40.0% | |
| TTCACTGTAGGTGACAATCT+TGG | - | chr6_1:56411241-56411260 | Msa0889310:intron | 40.0% | |
| TTCAAAACACGATGTGGCAA+AGG | - | chr6_1:56411365-56411384 | Msa0889310:CDS | 40.0% | |
| TCAGCTTTCGATAGTTGCAA+TGG | - | chr6_1:56411396-56411415 | Msa0889310:CDS | 40.0% | |
| ! | CACGGTGAAGGTTTTTGCTA+CGG | + | chr6_1:56411149-56411168 | None:intergenic | 45.0% |
| GTAGCAAAAACCTTCACCGT+GGG | - | chr6_1:56411148-56411167 | Msa0889310:CDS | 45.0% | |
| ATCCGAAGTCTATGCCAACT+GGG | - | chr6_1:56411204-56411223 | Msa0889310:CDS | 45.0% | |
| !! | GGTTTTAGTATGTGCCCAGT+TGG | + | chr6_1:56411221-56411240 | None:intergenic | 45.0% |
| CAATGGAACAAACGCACTTG+CGG | - | chr6_1:56411413-56411432 | Msa0889310:CDS | 45.0% | |
| CATAACAAACACTCCAGCGA+CGG | - | chr6_1:56411437-56411456 | Msa0889310:CDS | 45.0% | |
| CGTAGCAAAAACCTTCACCG+TGG | - | chr6_1:56411147-56411166 | Msa0889310:CDS | 50.0% | |
| TTCACCGTGGGTGATGACAT+GGG | - | chr6_1:56411160-56411179 | Msa0889310:CDS | 50.0% | |
| GATCCGAAGTCTATGCCAAC+TGG | - | chr6_1:56411203-56411222 | Msa0889310:CDS | 50.0% | |
| TGCCCAGTTGGCATAGACTT+CGG | + | chr6_1:56411209-56411228 | None:intergenic | 50.0% | |
| AGCAGAACAGTGACCAGGAA+AGG | + | chr6_1:56411502-56411521 | None:intergenic | 50.0% | |
| TTTCCTGGTCACTGTTCTGC+TGG | - | chr6_1:56411501-56411520 | Msa0889310:CDS | 50.0% | |
| CATGTCATCACCCACGGTGA+AGG | + | chr6_1:56411161-56411180 | None:intergenic | 55.0% | |
| CTTCACCGTGGGTGATGACA+TGG | - | chr6_1:56411159-56411178 | Msa0889310:CDS | 55.0% | |
| AGACTTCGGATCCCTTGGCT+GGG | + | chr6_1:56411195-56411214 | None:intergenic | 55.0% | |
| TAGACTTCGGATCCCTTGGC+TGG | + | chr6_1:56411196-56411215 | None:intergenic | 55.0% | |
| GGCATAGACTTCGGATCCCT+TGG | + | chr6_1:56411200-56411219 | None:intergenic | 55.0% | |
| TGACCAGCAGAACAGTGACC+AGG | + | chr6_1:56411507-56411526 | None:intergenic | 55.0% | |
| CCAGCCCATGTCATCACCCA+CGG | + | chr6_1:56411167-56411186 | None:intergenic | 60.0% | |
| TTCGGATCCCTTGGCTGGGA+TGG | + | chr6_1:56411191-56411210 | None:intergenic | 60.0% | |
| ACGGTGACTCTCACCGGAGT+AGG | - | chr6_1:56411456-56411475 | Msa0889310:CDS | 60.0% | |
| CGGTGACTCTCACCGGAGTA+GGG | - | chr6_1:56411457-56411476 | Msa0889310:CDS | 60.0% | |
| CCGTGGGTGATGACATGGGC+TGG | - | chr6_1:56411164-56411183 | Msa0889310:CDS | 65.0% | |
| GGCTGGACCATCCCAGCCAA+GGG | - | chr6_1:56411181-56411200 | Msa0889310:CDS | 65.0% | |
| CCAGCGACGGTGACTCTCAC+CGG | - | chr6_1:56411450-56411469 | Msa0889310:CDS | 65.0% | |
| GGGCTGGACCATCCCAGCCA+AGG | - | chr6_1:56411180-56411199 | Msa0889310:CDS | 70.0% | |
| CCGGTGAGAGTCACCGTCGC+TGG | + | chr6_1:56411453-56411472 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 56411037 | 56411563 | 56411037 | ID=Msa0889310;Name=Msa0889310 |
| chr6_1 | mRNA | 56411037 | 56411563 | 56411037 | ID=Msa0889310-mRNA-1;Parent=Msa0889310;Name=Msa0889310-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0|0|1|1|0.5|2|0|147 |
| chr6_1 | exon | 56411338 | 56411563 | 56411338 | ID=Msa0889310-mRNA-1:exon:11143;Parent=Msa0889310-mRNA-1 |
| chr6_1 | exon | 56411037 | 56411251 | 56411037 | ID=Msa0889310-mRNA-1:exon:11142;Parent=Msa0889310-mRNA-1 |
| chr6_1 | CDS | 56411338 | 56411563 | 56411338 | ID=Msa0889310-mRNA-1:cds;Parent=Msa0889310-mRNA-1 |
| chr6_1 | CDS | 56411037 | 56411251 | 56411037 | ID=Msa0889310-mRNA-1:cds;Parent=Msa0889310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
