AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536220 MtrunA17_Chr4g0002171 95.966 471 8 1 1 471 1 460 0.0 928
Msa0536220 MtrunA17_Chr2g0297971 27.962 422 247 19 32 442 216 591 2.62e-31 127
Msa0536220 MtrunA17_Chr2g0297971 28.111 217 129 8 230 444 282 473 2.91e-15 78.2
Msa0536220 MtrunA17_Chr8g0391901 26.905 420 252 17 32 442 238 611 1.60e-29 122
Msa0536220 MtrunA17_Chr1g0192821 28.679 265 150 12 183 445 25 252 4.89e-16 80.9
Msa0536220 MtrunA17_Chr1g0192821 28.173 323 180 16 118 438 25 297 2.74e-13 72.0
Msa0536220 MtrunA17_Chr1g0198221 30.916 262 153 12 183 442 17 252 1.05e-14 76.3
Msa0536220 MtrunA17_Chr2g0322121 26.302 384 209 17 99 446 2 347 3.23e-13 72.4
Msa0536220 MtrunA17_Chr2g0286241 27.119 236 142 8 214 444 59 269 5.56e-13 71.2
Msa0536220 MtrunA17_Chr1g0196221 26.441 295 182 11 164 446 8 279 1.77e-12 69.7
Msa0536220 MtrunA17_Chr1g0197401 26.549 226 123 8 230 442 14 209 2.25e-12 68.9
Msa0536220 MtrunA17_Chr4g0061581 23.387 372 216 16 116 470 20 339 4.42e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536220 AT1G51550.1 58.531 463 161 7 18 469 21 463 0.0 520
Msa0536220 AT2G18915.2 29.286 420 242 20 32 442 214 587 1.87e-34 136
Msa0536220 AT2G18915.1 29.286 420 242 20 32 442 204 577 2.05e-34 136
Msa0536220 AT5G57360.1 28.436 422 245 20 32 442 213 588 1.54e-31 128
Msa0536220 AT5G57360.2 28.436 422 245 20 32 442 213 588 1.76e-31 128
Msa0536220 AT1G68050.1 28.230 418 244 21 32 442 227 595 1.24e-30 125
Msa0536220 AT2G36360.2 30.612 294 147 15 161 442 4 252 6.06e-17 83.6
Msa0536220 AT2G36360.1 30.612 294 147 15 161 442 4 252 6.06e-17 83.6
Msa0536220 AT2G36360.5 30.435 299 150 15 161 442 4 261 6.48e-17 83.6
Msa0536220 AT2G36360.4 30.612 294 147 15 161 442 4 252 7.81e-17 83.6
Msa0536220 AT2G36360.3 30.612 294 147 15 161 442 4 252 7.96e-17 83.2
Msa0536220 AT1G08420.2 28.475 295 152 13 183 446 102 368 2.15e-13 73.2
Msa0536220 AT1G08420.1 28.475 295 152 13 183 446 102 368 2.48e-13 73.2
Msa0536220 AT1G18610.1 27.206 272 153 16 183 446 22 256 3.20e-13 72.4
Msa0536220 AT1G18610.1 26.460 291 169 14 183 462 75 331 1.61e-12 70.1
Msa0536220 AT1G18610.2 27.206 272 153 16 183 446 22 256 3.20e-13 72.4
Msa0536220 AT1G18610.2 26.460 291 169 14 183 462 75 331 1.61e-12 70.1
Msa0536220 AT2G27210.2 27.458 295 155 13 183 446 91 357 6.87e-13 71.6
Msa0536220 AT2G27210.1 27.458 295 155 13 183 446 91 357 7.00e-13 71.6

Find 125 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 4_1:-13022729 Msa0536220:CDS
GAGTGAGAAGCTCTTGCTTT+AGG 0.168448 4_1:+13024520 None:intergenic
CTAGTAGCATTATAGGTTTA+TGG 0.197523 4_1:-13022222 Msa0536220:three_prime_UTR
GGTGATTTCCTTGTTCTCTT+TGG 0.218840 4_1:-13023248 Msa0536220:CDS
GCATTGTCTAGTAGCATTAT+AGG 0.245048 4_1:-13022229 Msa0536220:three_prime_UTR
GACTTCACGGCCTTCGTTTA+GGG 0.260841 4_1:-13023040 Msa0536220:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 4_1:-13022859 Msa0536220:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 4_1:-13023041 Msa0536220:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 4_1:-13022489 Msa0536220:CDS
TCTTGAGGTATGTTGGTTAT+TGG 0.294095 4_1:+13024823 None:intergenic
AATACAGCAACTACTCAATT+AGG 0.317271 4_1:-13022281 Msa0536220:three_prime_UTR
CAGGGTTTGTTTGAGGTAGA+TGG 0.319353 4_1:+13025000 None:intergenic
AGTGAGAAGCTCTTGCTTTA+GGG 0.320830 4_1:+13024521 None:intergenic
AGAGAAAGAATTGCATCTAT+AGG 0.321173 4_1:+13024772 None:intergenic
TCTGACTGTCTTGTCTTGTT+TGG 0.342606 4_1:-13024484 Msa0536220:CDS
ATGGTAATCCATGGAGGAAT+TGG 0.346210 4_1:-13023062 Msa0536220:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 4_1:-13022483 Msa0536220:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 4_1:-13022523 Msa0536220:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 4_1:-13022920 Msa0536220:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 4_1:-13023290 Msa0536220:CDS
CTAGTGGTTTCTTCCATGTC+TGG 0.368544 4_1:+13024877 None:intergenic
TTTGAACTTGCCGTGGTTGA+AGG 0.370574 4_1:+13022645 None:intergenic
TCAACTCTAAGGACTAATTA+AGG 0.370650 4_1:-13022424 Msa0536220:exon
GGTCGTTATTTGTATGTGTT+TGG 0.379139 4_1:-13022531 Msa0536220:CDS
GAGAAAGAATTGCATCTATA+GGG 0.385396 4_1:+13024773 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 4_1:+13023324 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 4_1:-13022552 Msa0536220:CDS
GACTGTCTTGTCTTGTTTGG+TGG 0.399377 4_1:-13024481 Msa0536220:CDS
ATATGTCATATTGAAGATAA+TGG 0.402492 4_1:+13025062 None:intergenic
TTGTCAGATAGTCATTGTTT+CGG 0.403264 4_1:-13022999 Msa0536220:CDS
TGGTCATACATGTGTAGAAA+TGG 0.403859 4_1:-13023270 Msa0536220:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 4_1:-13023311 Msa0536220:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 4_1:-13022951 Msa0536220:CDS
GCTTGTGTTTGGCAGAAGAC+AGG 0.409294 4_1:+13024981 None:intergenic
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 4_1:-13023245 Msa0536220:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 4_1:-13022472 Msa0536220:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 4_1:-13023143 Msa0536220:CDS
TAGATGGTGTGGTAGAGAAT+TGG 0.419249 4_1:+13025016 None:intergenic
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 4_1:-13022435 Msa0536220:exon
CATGGAAAATGATAGATGTT+GGG 0.424832 4_1:-13023142 Msa0536220:CDS
AGTTATAATCAAAATTATAG+TGG 0.432532 4_1:-13024850 Msa0536220:CDS
TTGTTTGGTGGTGGCTGTGA+TGG 0.433357 4_1:-13024469 Msa0536220:CDS
ACTCAAGTCTCTCTTGCATA+AGG 0.439993 4_1:+13024693 None:intergenic
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 4_1:+13022483 None:intergenic
TGTCTTGTCTTGTTTGGTGG+TGG 0.453433 4_1:-13024478 Msa0536220:CDS
TGGAAACGATGGAAATCAAA+TGG 0.459866 4_1:-13022603 Msa0536220:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 4_1:-13023120 Msa0536220:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 4_1:-13022726 Msa0536220:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.461693 4_1:-13023328 Msa0536220:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 4_1:-13023203 Msa0536220:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 4_1:-13022516 Msa0536220:CDS
CAGAAGACAGGGTTTGTTTG+AGG 0.469784 4_1:+13024993 None:intergenic
CTTGTCAAGGTTACATGAGA+TGG 0.473461 4_1:-13022833 Msa0536220:CDS
ATGAAGTGCTTCATGATGTA+TGG 0.478974 4_1:-13022866 Msa0536220:CDS
GATGTAATCTTGAGGTATGT+TGG 0.481435 4_1:+13024816 None:intergenic
CTTGTGTTTGGCAGAAGACA+GGG 0.482677 4_1:+13024982 None:intergenic
CGTTATTTGTATGTGTTTGG+TGG 0.484542 4_1:-13022528 Msa0536220:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 4_1:-13022930 Msa0536220:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 4_1:+13022951 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 4_1:-13023230 Msa0536220:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 4_1:-13022623 Msa0536220:CDS
CACTCTCTTTGAACTTGCCG+TGG 0.493848 4_1:+13022638 None:intergenic
CATGGAGGAATTGGACTTCA+CGG 0.495304 4_1:-13023053 Msa0536220:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 4_1:-13022774 Msa0536220:CDS
CTTATCTGATTGAAAATACA+TGG 0.496690 4_1:+13022349 None:intergenic
TATGGTTTGATGATGCTTGT+TGG 0.497168 4_1:+13024925 None:intergenic
ATAGTCATTGTTTCGGCACA+TGG 0.499649 4_1:-13022992 Msa0536220:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 4_1:+13023110 None:intergenic
AAACTGATGAACATGGTGAT+TGG 0.504466 4_1:+13024630 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 4_1:-13023121 Msa0536220:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 4_1:-13022520 Msa0536220:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 4_1:-13022757 Msa0536220:CDS
CATAAATTGTCATACCCTCA+TGG 0.513611 4_1:-13024556 Msa0536220:CDS
TTTGAATCTCTTGCATGTCA+TGG 0.513878 4_1:+13024747 None:intergenic
CTAGGAAGTGAAATACCATC+TGG 0.516166 4_1:+13022780 None:intergenic
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 4_1:-13023039 Msa0536220:CDS
TTGCATCTATAGGGAGAAGA+AGG 0.528249 4_1:+13024782 None:intergenic
AACGTGGCGGAGGCGATGGA+TGG 0.538917 4_1:+13022955 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 4_1:+13022945 None:intergenic
ACTTGCCGTGGTTGAAGGAA+TGG 0.557428 4_1:+13022650 None:intergenic
CTATAAGCAAATATATCAGA+TGG 0.558115 4_1:-13024593 Msa0536220:CDS
GTAGCAGTGTGACCAACTCT+AGG 0.558419 4_1:+13022762 None:intergenic
ATATGCTACATATGACATAG+TGG 0.559609 4_1:+13022377 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 4_1:-13022704 Msa0536220:CDS
TGGTTATTGGATACTTGTCA+AGG 0.561263 4_1:-13022846 Msa0536220:CDS
TAGTTCCATTCCTTCAACCA+CGG 0.562370 4_1:-13022655 Msa0536220:CDS
TTGCATCGACGACAAGAGAA+TGG 0.566710 4_1:-13023081 Msa0536220:CDS
TTTGGTGGTGGCTGTGATGG+AGG 0.568418 4_1:-13024466 Msa0536220:intron
GGTCATACATGTGTAGAAAT+GGG 0.572564 4_1:-13023269 Msa0536220:CDS
AGACTTGAGTTCAACATGTG+TGG 0.574605 4_1:-13024680 Msa0536220:CDS
GACAAGAGAATGGTAATCCA+TGG 0.574745 4_1:-13023071 Msa0536220:CDS
GACGACACCTTGATGACACA+TGG 0.581104 4_1:-13023370 Msa0536220:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 4_1:-13023208 Msa0536220:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 4_1:-13023031 Msa0536220:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 4_1:+13023240 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 4_1:+13023104 None:intergenic
TTGATTATAACTAACACTAG+TGG 0.606440 4_1:+13024861 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 4_1:+13022474 None:intergenic
GATTTACAAAACATACCAGA+TGG 0.608221 4_1:-13022795 Msa0536220:CDS
TTTGTTTGAGGTAGATGGTG+TGG 0.609636 4_1:+13025005 None:intergenic
ATGCCACCCATGTGTCATCA+AGG 0.622366 4_1:+13023363 None:intergenic
GACACATGGGTGGCATACAT+TGG 0.624790 4_1:-13023356 Msa0536220:CDS
ACATACAAATAACGACCAGA+AGG 0.627124 4_1:+13022537 None:intergenic
GTATGACCAAATCTTCCACT+TGG 0.629532 4_1:+13023284 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 4_1:+13023054 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 4_1:+13023107 None:intergenic
ATGGCTTCTAGTGTTCGACC+AGG 0.645571 4_1:-13024355 Msa0536220:intron
GGAAATCTAAATCTCCATGA+GGG 0.645796 4_1:+13024542 None:intergenic
CGATGAAACGATCTAGACTT+CGG 0.657515 4_1:+13022573 None:intergenic
GTTACACACAATGAAAACAA+AGG 0.659251 4_1:-13023176 Msa0536220:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 4_1:+13022939 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 4_1:-13023299 Msa0536220:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 4_1:+13023030 None:intergenic
GGGAAATCTAAATCTCCATG+AGG 0.678724 4_1:+13024541 None:intergenic
ACACCTTGATGACACATGGG+TGG 0.680411 4_1:-13023366 Msa0536220:CDS
AGTGTTGCTCCACCACCTAG+GGG 0.681365 4_1:-13023119 Msa0536220:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 4_1:+13022548 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.688260 4_1:-13022629 Msa0536220:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 4_1:-13022614 Msa0536220:CDS
ATAGTGAAGATGTAATCTTG+AGG 0.705437 4_1:+13024808 None:intergenic
ACGACACCTTGATGACACAT+GGG 0.706425 4_1:-13023369 Msa0536220:CDS
AAGAGAATGGTAATCCATGG+AGG 0.711153 4_1:-13023068 Msa0536220:CDS
TAACTTCATCTGAAACACTG+TGG 0.716627 4_1:-13024720 Msa0536220:CDS
TCCATGAAAACTGATGAACA+TGG 0.770136 4_1:+13024623 None:intergenic
AACGTGTGTCCTGAACGTGG+CGG 0.807074 4_1:+13022942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTATGTTTTGTTTTTT+TGG + chr4_1:13022341-13022360 None:intergenic 15.0%
!! AGTTATAATCAAAATTATAG+TGG - chr4_1:13022443-13022462 Msa0536220:CDS 15.0%
!!! CTTTTATTTCTTTCTTTTTT+TGG - chr4_1:13022868-13022887 Msa0536220:CDS 15.0%
!! TATTATATAAAATGATAACC+TGG + chr4_1:13022959-13022978 None:intergenic 15.0%
!!! TTAAAAGTTTGTTATAGTTT+AGG - chr4_1:13023411-13023430 Msa0536220:intron 15.0%
!!! TATAAAGATTGATTTTTGAC+AGG + chr4_1:13022197-13022216 None:intergenic 20.0%
!! ATATGTCATATTGAAGATAA+TGG + chr4_1:13022234-13022253 None:intergenic 20.0%
!!! TTATGTTTTGTTTTTTTGGT+TGG + chr4_1:13022337-13022356 None:intergenic 20.0%
!! AAAAGAAAGAAATAAAAGCA+TGG + chr4_1:13022866-13022885 None:intergenic 20.0%
!! TTACAGTAATTGATGTAAAT+TGG - chr4_1:13023562-13023581 Msa0536220:intron 20.0%
!! TGTATAAATAATTCATATGG+TGG + chr4_1:13023713-13023732 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG + chr4_1:13023716-13023735 None:intergenic 20.0%
!!! GTGAAAATTGTAAAAACTTT+TGG - chr4_1:13025042-13025061 Msa0536220:five_prime_UTR 20.0%
!!! TTTTTTGTTGAAGCTATCTA+TGG + chr4_1:13022389-13022408 None:intergenic 25.0%
! AAAAAACAAAAAACCAGACA+TGG - chr4_1:13022403-13022422 Msa0536220:three_prime_UTR 25.0%
! TTGATTATAACTAACACTAG+TGG + chr4_1:13022435-13022454 None:intergenic 25.0%
! CTATAAGCAAATATATCAGA+TGG - chr4_1:13022700-13022719 Msa0536220:CDS 25.0%
! ATTATTTACCCTAAAGAGAA+AGG - chr4_1:13023024-13023043 Msa0536220:CDS 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG + chr4_1:13023035-13023054 None:intergenic 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG + chr4_1:13023036-13023055 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG - chr4_1:13023035-13023054 Msa0536220:CDS 25.0%
! GTCTTGACTTAAAAATTAGA+CGG + chr4_1:13023203-13023222 None:intergenic 25.0%
! AGGTAAATAAATCCTTCTTA+TGG + chr4_1:13023634-13023653 None:intergenic 25.0%
!! TTATTTATACACTGCCTTTT+TGG - chr4_1:13023722-13023741 Msa0536220:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG - chr4_1:13023901-13023920 Msa0536220:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG - chr4_1:13023965-13023984 Msa0536220:intron 25.0%
!! AGAAATAGGACAATACTTTT+TGG - chr4_1:13024387-13024406 Msa0536220:intron 25.0%
!! ACATAGGAAAAATGACTTTT+GGG - chr4_1:13024605-13024624 Msa0536220:CDS 25.0%
! CTTATCTGATTGAAAATACA+TGG + chr4_1:13024947-13024966 None:intergenic 25.0%
!! ATTGATTTTTGACAGGTTAG+TGG + chr4_1:13022190-13022209 None:intergenic 30.0%
ATAGTGAAGATGTAATCTTG+AGG + chr4_1:13022488-13022507 None:intergenic 30.0%
GAGAAAGAATTGCATCTATA+GGG + chr4_1:13022523-13022542 None:intergenic 30.0%
AGAGAAAGAATTGCATCTAT+AGG + chr4_1:13022524-13022543 None:intergenic 30.0%
! ATTTTCAGAAGTGATTCACA+TGG - chr4_1:13022919-13022938 Msa0536220:CDS 30.0%
! CGAGTAACAAAAGTGTAATT+AGG - chr4_1:13023381-13023400 Msa0536220:intron 30.0%
TACTTGATCTTACCATAAGA+AGG - chr4_1:13023619-13023638 Msa0536220:intron 30.0%
AAGAAGGATTTATTTACCTG+TGG - chr4_1:13023635-13023654 Msa0536220:intron 30.0%
CTAACTTTCAAGGACTATAT+AGG + chr4_1:13023664-13023683 None:intergenic 30.0%
CTATATAGTCCTTGAAAGTT+AGG - chr4_1:13023662-13023681 Msa0536220:intron 30.0%
! ATCTAGTTTGAAGTCCAAAA+AGG + chr4_1:13023739-13023758 None:intergenic 30.0%
ATTAGTCAAATCTCGACTAT+TGG - chr4_1:13023757-13023776 Msa0536220:intron 30.0%
TCTTCCATTTCAATATTCTC+TGG + chr4_1:13023972-13023991 None:intergenic 30.0%
! CAATCCATGTATCATTTTGA+CGG + chr4_1:13024092-13024111 None:intergenic 30.0%
GTTACACACAATGAAAACAA+AGG - chr4_1:13024117-13024136 Msa0536220:intron 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG - chr4_1:13024133-13024152 Msa0536220:intron 30.0%
TCATGGAAAATGATAGATGT+TGG - chr4_1:13024150-13024169 Msa0536220:intron 30.0%
CATGGAAAATGATAGATGTT+GGG - chr4_1:13024151-13024170 Msa0536220:intron 30.0%
TTGTCAGATAGTCATTGTTT+CGG - chr4_1:13024294-13024313 Msa0536220:intron 30.0%
!! AATAGGACAATACTTTTTGG+AGG - chr4_1:13024390-13024409 Msa0536220:intron 30.0%
GATTTACAAAACATACCAGA+TGG - chr4_1:13024498-13024517 Msa0536220:CDS 30.0%
! GACATAGGAAAAATGACTTT+TGG - chr4_1:13024604-13024623 Msa0536220:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG - chr4_1:13024834-13024853 Msa0536220:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG - chr4_1:13024835-13024854 Msa0536220:CDS 30.0%
! TCAACTCTAAGGACTAATTA+AGG - chr4_1:13024869-13024888 Msa0536220:CDS 30.0%
ATATGCTACATATGACATAG+TGG + chr4_1:13024919-13024938 None:intergenic 30.0%
AATACAGCAACTACTCAATT+AGG - chr4_1:13025012-13025031 Msa0536220:five_prime_UTR 30.0%
CTAGTAGCATTATAGGTTTA+TGG - chr4_1:13025071-13025090 Msa0536220:five_prime_UTR 30.0%
GGTAGAGAATTGGTAAAAAC+TGG + chr4_1:13022270-13022289 None:intergenic 35.0%
!!! TTTTTTGGTTGGCTTGTGTT+TGG + chr4_1:13022326-13022345 None:intergenic 35.0%
!! TATGGTTTGATGATGCTTGT+TGG + chr4_1:13022371-13022390 None:intergenic 35.0%
! TCTTGAGGTATGTTGGTTAT+TGG + chr4_1:13022473-13022492 None:intergenic 35.0%
GATGTAATCTTGAGGTATGT+TGG + chr4_1:13022480-13022499 None:intergenic 35.0%
TTTGAATCTCTTGCATGTCA+TGG + chr4_1:13022549-13022568 None:intergenic 35.0%
! TAACTTCATCTGAAACACTG+TGG - chr4_1:13022573-13022592 Msa0536220:CDS 35.0%
AAACTGATGAACATGGTGAT+TGG + chr4_1:13022666-13022685 None:intergenic 35.0%
! ACCATGTTCATCAGTTTTCA+TGG - chr4_1:13022669-13022688 Msa0536220:CDS 35.0%
TCCATGAAAACTGATGAACA+TGG + chr4_1:13022673-13022692 None:intergenic 35.0%
CATAAATTGTCATACCCTCA+TGG - chr4_1:13022737-13022756 Msa0536220:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG + chr4_1:13022754-13022773 None:intergenic 35.0%
ATTAGACGGTTAGTAGACAA+AGG + chr4_1:13023189-13023208 None:intergenic 35.0%
AGACTAACTTAGACCAACAT+TGG - chr4_1:13023219-13023238 Msa0536220:CDS 35.0%
AAGGACCTGATTGTAACAAT+TGG - chr4_1:13023286-13023305 Msa0536220:CDS 35.0%
AGGACCTGATTGTAACAATT+GGG - chr4_1:13023287-13023306 Msa0536220:CDS 35.0%
TTAAGCATTTCAACTTGCCT+AGG - chr4_1:13023589-13023608 Msa0536220:intron 35.0%
! GTGGCATATTTTCCAAAACT+GGG + chr4_1:13023694-13023713 None:intergenic 35.0%
AAATGGAAGACAGTTCATTC+AGG - chr4_1:13023982-13024001 Msa0536220:intron 35.0%
TGGTCATACATGTGTAGAAA+TGG - chr4_1:13024023-13024042 Msa0536220:intron 35.0%
GGTCATACATGTGTAGAAAT+GGG - chr4_1:13024024-13024043 Msa0536220:intron 35.0%
GAAACCGTCAAAATGATACA+TGG - chr4_1:13024085-13024104 Msa0536220:intron 35.0%
CGTCAAAATGATACATGGAT+TGG - chr4_1:13024090-13024109 Msa0536220:intron 35.0%
! TGACTTGCATTGGAAGAAAT+AGG - chr4_1:13024373-13024392 Msa0536220:intron 35.0%
!! ACAATACTTTTTGGAGGTAG+AGG - chr4_1:13024396-13024415 Msa0536220:intron 35.0%
! ATGAAGTGCTTCATGATGTA+TGG - chr4_1:13024427-13024446 Msa0536220:intron 35.0%
GCTTCATGATGTATGGTTAT+TGG - chr4_1:13024434-13024453 Msa0536220:intron 35.0%
TGGTTATTGGATACTTGTCA+AGG - chr4_1:13024447-13024466 Msa0536220:intron 35.0%
GGAGGTAGGTTGTTAATTTA+TGG - chr4_1:13024564-13024583 Msa0536220:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG - chr4_1:13024567-13024586 Msa0536220:CDS 35.0%
TGGAAACGATGGAAATCAAA+TGG - chr4_1:13024690-13024709 Msa0536220:CDS 35.0%
ACATACAAATAACGACCAGA+AGG + chr4_1:13024759-13024778 None:intergenic 35.0%
GGTCGTTATTTGTATGTGTT+TGG - chr4_1:13024762-13024781 Msa0536220:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG - chr4_1:13024765-13024784 Msa0536220:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG - chr4_1:13024770-13024789 Msa0536220:CDS 35.0%
TTATCAAATCCAAGTCCAGA+AGG + chr4_1:13024822-13024841 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG - chr4_1:13024821-13024840 Msa0536220:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG - chr4_1:13024836-13024855 Msa0536220:CDS 35.0%
GCATTGTCTAGTAGCATTAT+AGG - chr4_1:13025064-13025083 Msa0536220:five_prime_UTR 35.0%
TAGATGGTGTGGTAGAGAAT+TGG + chr4_1:13022280-13022299 None:intergenic 40.0%
! TTTGTTTGAGGTAGATGGTG+TGG + chr4_1:13022291-13022310 None:intergenic 40.0%
TTGCATCTATAGGGAGAAGA+AGG + chr4_1:13022514-13022533 None:intergenic 40.0%
ACTCAAGTCTCTCTTGCATA+AGG + chr4_1:13022603-13022622 None:intergenic 40.0%
AGACTTGAGTTCAACATGTG+TGG - chr4_1:13022613-13022632 Msa0536220:CDS 40.0%
GGGAAATCTAAATCTCCATG+AGG + chr4_1:13022755-13022774 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG + chr4_1:13022775-13022794 None:intergenic 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG - chr4_1:13022809-13022828 Msa0536220:CDS 40.0%
! TAGACCAACATTGGCTACTT+AGG - chr4_1:13023228-13023247 Msa0536220:CDS 40.0%
CTAGACCGTTAATAGACGAA+AGG - chr4_1:13023267-13023286 Msa0536220:CDS 40.0%
CAGGTCCTTTCGTCTATTAA+CGG + chr4_1:13023275-13023294 None:intergenic 40.0%
ACTGCCCAATTGTTACAATC+AGG + chr4_1:13023294-13023313 None:intergenic 40.0%
! GTGTCAGGATTGCACAATTT+TGG + chr4_1:13023360-13023379 None:intergenic 40.0%
! ACTTTTGTTACTCGAGTGTC+AGG + chr4_1:13023375-13023394 None:intergenic 40.0%
AGATCAAGTAGAAGTCTCCT+AGG + chr4_1:13023609-13023628 None:intergenic 40.0%
AGGACTATATAGGAATCCAC+AGG + chr4_1:13023654-13023673 None:intergenic 40.0%
GGGACATAACCTAACTTTCA+AGG + chr4_1:13023674-13023693 None:intergenic 40.0%
! GTTAGGTTATGTCCCAGTTT+TGG - chr4_1:13023679-13023698 Msa0536220:intron 40.0%
! GGTGGCATATTTTCCAAAAC+TGG + chr4_1:13023695-13023714 None:intergenic 40.0%
TTTCACTAAAGACGCTTCAG+AGG - chr4_1:13023841-13023860 Msa0536220:intron 40.0%
GTATGACCAAATCTTCCACT+TGG + chr4_1:13024012-13024031 None:intergenic 40.0%
GGTGATTTCCTTGTTCTCTT+TGG - chr4_1:13024045-13024064 Msa0536220:intron 40.0%
GATTTCCTTGTTCTCTTTGG+AGG - chr4_1:13024048-13024067 Msa0536220:intron 40.0%
!! TTTGGAGGCATCAATGATCA+TGG - chr4_1:13024063-13024082 Msa0536220:intron 40.0%
GACAAGAGAATGGTAATCCA+TGG - chr4_1:13024222-13024241 Msa0536220:intron 40.0%
AAGAGAATGGTAATCCATGG+AGG - chr4_1:13024225-13024244 Msa0536220:intron 40.0%
ATGGTAATCCATGGAGGAAT+TGG - chr4_1:13024231-13024250 Msa0536220:intron 40.0%
ATAGTCATTGTTTCGGCACA+TGG - chr4_1:13024301-13024320 Msa0536220:intron 40.0%
!! CTTTTTGGAGGTAGAGGTTT+AGG - chr4_1:13024402-13024421 Msa0536220:intron 40.0%
CTTGTCAAGGTTACATGAGA+TGG - chr4_1:13024460-13024479 Msa0536220:intron 40.0%
CTAGGAAGTGAAATACCATC+TGG + chr4_1:13024516-13024535 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG - chr4_1:13024519-13024538 Msa0536220:CDS 40.0%
! CACACTGCTACAATGGTTTT+AGG - chr4_1:13024543-13024562 Msa0536220:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG - chr4_1:13024546-13024565 Msa0536220:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG - chr4_1:13024550-13024569 Msa0536220:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG - chr4_1:13024589-13024608 Msa0536220:CDS 40.0%
TAGTTCCATTCCTTCAACCA+CGG - chr4_1:13024638-13024657 Msa0536220:CDS 40.0%
CGATGAAACGATCTAGACTT+CGG + chr4_1:13024723-13024742 None:intergenic 40.0%
! CAGGGTTTGTTTGAGGTAGA+TGG + chr4_1:13022296-13022315 None:intergenic 45.0%
! CAGAAGACAGGGTTTGTTTG+AGG + chr4_1:13022303-13022322 None:intergenic 45.0%
CTTGTGTTTGGCAGAAGACA+GGG + chr4_1:13022314-13022333 None:intergenic 45.0%
CTAGTGGTTTCTTCCATGTC+TGG + chr4_1:13022419-13022438 None:intergenic 45.0%
GAGTGAGAAGCTCTTGCTTT+AGG + chr4_1:13022776-13022795 None:intergenic 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG - chr4_1:13022812-13022831 Msa0536220:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG - chr4_1:13022815-13022834 Msa0536220:CDS 45.0%
AGAGCCTAAGTAGCCAATGT+TGG + chr4_1:13023235-13023254 None:intergenic 45.0%
! ACATTGGCTACTTAGGCTCT+TGG - chr4_1:13023235-13023254 Msa0536220:CDS 45.0%
!! CAATTGGGCAGTTTGCTGTA+TGG - chr4_1:13023302-13023321 Msa0536220:CDS 45.0%
AGTTCGCCCAATTGAAACAC+AGG - chr4_1:13023332-13023351 Msa0536220:CDS 45.0%
GTTCGCCCAATTGAAACACA+GGG - chr4_1:13023333-13023352 Msa0536220:CDS 45.0%
TTCGCCCAATTGAAACACAG+GGG - chr4_1:13023334-13023353 Msa0536220:CDS 45.0%
TTGGCCCCTGTGTTTCAATT+GGG + chr4_1:13023341-13023360 None:intergenic 45.0%
TTTGGCCCCTGTGTTTCAAT+TGG + chr4_1:13023342-13023361 None:intergenic 45.0%
! ACGACACCTTGATGACACAT+GGG - chr4_1:13023924-13023943 Msa0536220:intron 45.0%
GTTCATTCAGGCATACCAAG+TGG - chr4_1:13023994-13024013 Msa0536220:intron 45.0%
GGCATACCAAGTGGAAGATT+TGG - chr4_1:13024003-13024022 Msa0536220:intron 45.0%
TGATGCCTCCAAAGAGAACA+AGG + chr4_1:13024056-13024075 None:intergenic 45.0%
! TTGCATCGACGACAAGAGAA+TGG - chr4_1:13024212-13024231 Msa0536220:intron 45.0%
CATGGAGGAATTGGACTTCA+CGG - chr4_1:13024240-13024259 Msa0536220:intron 45.0%
AGTTGGTCACACTGCTACAA+TGG - chr4_1:13024536-13024555 Msa0536220:CDS 45.0%
TTTGAACTTGCCGTGGTTGA+AGG + chr4_1:13024651-13024670 None:intergenic 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG - chr4_1:13024664-13024683 Msa0536220:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG - chr4_1:13024773-13024792 Msa0536220:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG - chr4_1:13024804-13024823 Msa0536220:CDS 45.0%
GAGCTTGTGCTTCAACTCTA+AGG - chr4_1:13024858-13024877 Msa0536220:CDS 45.0%
GCTTGTGTTTGGCAGAAGAC+AGG + chr4_1:13022315-13022334 None:intergenic 50.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG - chr4_1:13022824-13022843 Msa0536220:CDS 50.0%
ATGGCTTCTAGTGTTCGACC+AGG - chr4_1:13022938-13022957 Msa0536220:CDS 50.0%
AGAGACTCAAGTCGCGCAAT+TGG + chr4_1:13023139-13023158 None:intergenic 50.0%
TTGCGCGACTTGAGTCTCTT+AGG - chr4_1:13023140-13023159 Msa0536220:CDS 50.0%
!! TTGGGCAGTTTGCTGTATGG+AGG - chr4_1:13023305-13023324 Msa0536220:CDS 50.0%
! GACGACACCTTGATGACACA+TGG - chr4_1:13023923-13023942 Msa0536220:intron 50.0%
! ACACCTTGATGACACATGGG+TGG - chr4_1:13023927-13023946 Msa0536220:intron 50.0%
ATGCCACCCATGTGTCATCA+AGG + chr4_1:13023933-13023952 None:intergenic 50.0%
GACACATGGGTGGCATACAT+TGG - chr4_1:13023937-13023956 Msa0536220:intron 50.0%
CGTGAAGTCCAATTCCTCCA+TGG + chr4_1:13024242-13024261 None:intergenic 50.0%
GACTTCACGGCCTTCGTTTA+GGG - chr4_1:13024253-13024272 Msa0536220:intron 50.0%
ACTTCACGGCCTTCGTTTAG+GGG - chr4_1:13024254-13024273 Msa0536220:intron 50.0%
TCCATGTGTCCCCTAAACGA+AGG + chr4_1:13024266-13024285 None:intergenic 50.0%
!! GGACACACGTTGACTTGCAT+TGG - chr4_1:13024363-13024382 Msa0536220:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG + chr4_1:13024534-13024553 None:intergenic 50.0%
ACTTGCCGTGGTTGAAGGAA+TGG + chr4_1:13024646-13024665 None:intergenic 50.0%
CACTCTCTTTGAACTTGCCG+TGG + chr4_1:13024658-13024677 None:intergenic 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG - chr4_1:13024670-13024689 Msa0536220:CDS 50.0%
TGACGAGGATGTGGAAACGA+TGG - chr4_1:13024679-13024698 Msa0536220:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG - chr4_1:13024777-13024796 Msa0536220:CDS 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG + chr4_1:13024813-13024832 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG - chr4_1:13024810-13024829 Msa0536220:CDS 50.0%
!! TTTGGTGGTGGCTGTGATGG+AGG - chr4_1:13022827-13022846 Msa0536220:CDS 55.0%
! GAGTGTTGCTCCACCACCTA+GGG - chr4_1:13024173-13024192 Msa0536220:intron 55.0%
! AGTGTTGCTCCACCACCTAG+GGG - chr4_1:13024174-13024193 Msa0536220:intron 55.0%
GGACTTCACGGCCTTCGTTT+AGG - chr4_1:13024252-13024271 Msa0536220:intron 55.0%
GCCTTCGTTTAGGGGACACA+TGG - chr4_1:13024262-13024281 Msa0536220:intron 55.0%
AACGTGTGTCCTGAACGTGG+CGG + chr4_1:13024354-13024373 None:intergenic 55.0%
GTCAACGTGTGTCCTGAACG+TGG + chr4_1:13024357-13024376 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG + chr4_1:13024748-13024767 None:intergenic 55.0%
!! GGAGTGTTGCTCCACCACCT+AGG - chr4_1:13024172-13024191 Msa0536220:intron 60.0%
CAAGCAGCATGAGCTCCCCT+AGG + chr4_1:13024192-13024211 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG - chr4_1:13024741-13024760 Msa0536220:CDS 60.0%
GCATGAGCTCCCCTAGGTGG+TGG + chr4_1:13024186-13024205 None:intergenic 65.0%
GCAGCATGAGCTCCCCTAGG+TGG + chr4_1:13024189-13024208 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG + chr4_1:13024341-13024360 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG + chr4_1:13024351-13024370 None:intergenic 65.0%
! CCTGAACGTGGCGGAGGCGA+TGG + chr4_1:13024345-13024364 None:intergenic 70.0%
CCATCGCCTCCGCCACGTTC+AGG - chr4_1:13024342-13024361 Msa0536220:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 13022187 13025128 13022187 ID=Msa0536220;Name=Msa0536220
chr4_1 mRNA 13022187 13025128 13022187 ID=Msa0536220-mRNA-1;Parent=Msa0536220;Name=Msa0536220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=235|0|0.66|0.66|1|1|3|250|471
chr4_1 exon 13022187 13023392 13022187 ID=Msa0536220-mRNA-1:exon:4140;Parent=Msa0536220-mRNA-1
chr4_1 exon 13024356 13024388 13024356 ID=Msa0536220-mRNA-1:exon:4139;Parent=Msa0536220-mRNA-1
chr4_1 exon 13024467 13025128 13024467 ID=Msa0536220-mRNA-1:exon:4138;Parent=Msa0536220-mRNA-1
chr4_1 five_prime_UTR 13024894 13025128 13024894 ID=Msa0536220-mRNA-1:five_prime_utr;Parent=Msa0536220-mRNA-1
chr4_1 CDS 13024467 13024893 13024467 ID=Msa0536220-mRNA-1:cds;Parent=Msa0536220-mRNA-1
chr4_1 CDS 13024356 13024388 13024356 ID=Msa0536220-mRNA-1:cds;Parent=Msa0536220-mRNA-1
chr4_1 CDS 13022437 13023392 13022437 ID=Msa0536220-mRNA-1:cds;Parent=Msa0536220-mRNA-1
chr4_1 three_prime_UTR 13022187 13022436 13022187 ID=Msa0536220-mRNA-1:three_prime_utr;Parent=Msa0536220-mRNA-1
Gene Sequence

>Msa0536220

ATGGAAGAAACCACTAGTGTTAGTTATAATCAAAATTATAGTGGATCACCAATAACCAACATACCTCAAGATTACATCTTCACTATTATCCTTCTTCTCCCTATAGATGCAATTCTTTCTCTTTCCATGACATGCAAGAGATTCAAAGCTTTAACTTCATCTGAAACACTGTGGAAATCCTTATGCAAGAGAGACTTGAGTTCAACATGTGTGGATTCACTAGTCAAGTCTTGTAATATTTCCAATCACCATGTTCATCAGTTTTCATGGATGAAACTCTATAAGCAAATATATCAGATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGAAGTGATTCACATGGCTTCTAGTGTTCGACCAGGACGACACCTTGATGACACATGGGTGGCATACATTGGTAGCGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTAGAAATGGGTGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTACACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGACGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTTGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGTCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACGGCAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>Msa0536220

MEETTSVSYNQNYSGSPITNIPQDYIFTIILLLPIDAILSLSMTCKRFKALTSSETLWKSLCKRDLSSTCVDSLVKSCNISNHHVHQFSWMKLYKQIYQMDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGEVIHMASSVRPGRHLDDTWVAYIGSDFQRILKWKTVHSGIPSGRFGHTCVEMGDFLVLFGGINDHGNRQNDTWIGKVTHNENKGITFSWKMIDVGSVAPPPRGAHAACCIDDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTASSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL*