AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891350 MtrunA17_Chr1g0181131 94.444 108 6 0 49 156 74 181 1.14e-70 213
Msa0891350 MtrunA17_Chr7g0264181 93.519 108 7 0 49 156 75 182 2.50e-70 212
Msa0891350 MtrunA17_Chr4g0028871 87.037 108 14 0 49 156 74 181 4.83e-66 201
Msa0891350 MtrunA17_Chr2g0326841 86.111 108 15 0 49 156 74 181 2.11e-65 199
Msa0891350 MtrunA17_Chr3g0142491 64.085 142 46 1 49 185 76 217 2.95e-60 187
Msa0891350 MtrunA17_Chr1g0177391 75.000 108 27 0 49 156 70 177 1.79e-57 179
Msa0891350 MtrunA17_Chr1g0151201 66.667 108 36 0 49 156 72 179 2.02e-50 162
Msa0891350 MtrunA17_Chr1g0156401 57.692 78 12 1 49 105 35 112 7.30e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891350 AT2G28305.3 87.963 108 13 0 49 156 69 176 1.29e-67 205
Msa0891350 AT2G28305.1 87.963 108 13 0 49 156 69 176 4.48e-67 204
Msa0891350 AT2G37210.1 87.963 108 13 0 49 156 75 182 1.14e-66 203
Msa0891350 AT3G53450.1 87.037 108 14 0 49 156 75 182 4.14e-66 202
Msa0891350 AT5G06300.1 82.407 108 19 0 49 156 70 177 1.27e-61 191
Msa0891350 AT5G03270.2 83.333 108 18 0 49 156 80 187 6.91e-61 188
Msa0891350 AT5G03270.1 83.333 108 18 0 49 156 80 187 1.16e-60 187
Msa0891350 AT2G37210.2 71.212 132 14 1 49 156 75 206 1.42e-60 189
Msa0891350 AT4G35190.2 61.379 145 54 1 14 156 33 177 1.76e-58 182
Msa0891350 AT4G35190.1 61.379 145 54 1 14 156 33 177 5.56e-58 182
Msa0891350 AT2G35990.3 70.093 107 32 0 49 155 18 124 1.33e-52 166
Msa0891350 AT2G35990.2 70.093 107 32 0 49 155 18 124 1.33e-52 166
Msa0891350 AT2G35990.1 70.093 107 32 0 49 155 70 176 3.84e-52 166
Msa0891350 AT5G11950.4 65.741 108 37 0 49 156 18 125 4.24e-50 159
Msa0891350 AT5G11950.1 65.741 108 37 0 49 156 71 178 1.84e-49 159
Msa0891350 AT5G11950.2 65.741 108 37 0 49 156 71 178 1.84e-49 159
Msa0891350 AT5G11950.3 65.741 108 37 0 49 156 71 178 1.84e-49 159
Msa0891350 AT2G28305.2 95.588 68 3 0 49 116 69 136 3.63e-42 139
Msa0891350 AT5G26140.2 51.667 120 36 1 59 156 6 125 1.56e-34 120
Msa0891350 AT5G26140.1 50.000 106 31 1 73 156 1 106 1.21e-27 101
Msa0891350 AT5G26140.3 60.000 70 28 0 87 156 22 91 4.13e-24 92.4

Find 62 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTGTTATACCCTAATTT+TGG 0.249740 6_1:-65929372 Msa0891350:three_prime_UTR
AAATTACATGCAGGTGGTTA+TGG 0.290968 6_1:-65929895 Msa0891350:intron
TCAAGAGTTAGTGAAGAAAT+TGG 0.311954 6_1:-65929592 Msa0891350:CDS
CTTGAGATGTTATACTCTTC+AGG 0.312294 6_1:+65929403 None:intergenic
ACAATTATGTGGTGCGCATT+TGG 0.347076 6_1:+65929628 None:intergenic
AATTACATGCAGGTGGTTAT+GGG 0.415602 6_1:-65929894 Msa0891350:intron
GTTGAAGATGATGAGGTTAC+CGG 0.428312 6_1:-65932008 None:intergenic
ATTGAAAGAGACTTTGACAT+AGG 0.430120 6_1:+65929213 None:intergenic
CTCTCTAGGCATGAGTGTCT+TGG 0.437074 6_1:+65931670 None:intergenic
GTCATAACCTGGGCTCAACT+TGG 0.447889 6_1:-65929850 Msa0891350:CDS
TCTCTAGGCATGAGTGTCTT+GGG 0.451553 6_1:+65931671 None:intergenic
TATTTGCAAAATTCACATGC+AGG 0.454780 6_1:-65929252 Msa0891350:three_prime_UTR
AAGGTGGTGACGGTTGAAGT+TGG 0.456703 6_1:-65931941 Msa0891350:CDS
TCTTCACTAACTCTTGATGT+AGG 0.476926 6_1:+65929598 None:intergenic
GTGGGACTAGTAAATGTTGA+TGG 0.489170 6_1:-65929709 Msa0891350:CDS
CAGAGGTGTGGTGAAGGGAT+TGG 0.489512 6_1:-65931912 Msa0891350:CDS
TATAACATCTCAAGGTAGCT+AGG 0.494861 6_1:-65929394 Msa0891350:three_prime_UTR
GGTGACAGAGTTGTTATTGT+TGG 0.509678 6_1:-65931987 Msa0891350:CDS
ACTTGGGATTCACGACAAAC+CGG 0.510400 6_1:-65929833 Msa0891350:intron
TTCAAAGTTGAGCTGCAAGA+TGG 0.515322 6_1:-65929443 Msa0891350:CDS
AACAATAACAACTCTGTCAC+CGG 0.517942 6_1:+65931989 None:intergenic
TAGCTCAGGCTAACCTGGTA+AGG 0.520557 6_1:+65931086 None:intergenic
AGATGGCAGAGGTGTGGTGA+AGG 0.528423 6_1:-65931918 Msa0891350:CDS
ATTTGCAAAATTCACATGCA+GGG 0.532975 6_1:-65929251 Msa0891350:three_prime_UTR
ACTTATTCAAACTATTTGAA+AGG 0.538337 6_1:+65929169 None:intergenic
AACTTCTTGAAGTCATAACC+TGG 0.539956 6_1:-65929861 Msa0891350:CDS
GATGTTATACTCTTCAGGAT+AGG 0.549445 6_1:+65929408 None:intergenic
CTGTAGCAGATATGCATCAA+AGG 0.549564 6_1:-65931146 Msa0891350:CDS
TTTGCAGCTAACTGGTGAAA+CGG 0.551931 6_1:-65931184 Msa0891350:intron
TCATAACCTGGGCTCAACTT+GGG 0.556522 6_1:-65929849 Msa0891350:CDS
GTGACGAGGAAGGTGGTGAC+AGG 0.557480 6_1:-65931877 Msa0891350:intron
GTGAAGGGATTGGACGAAGA+AGG 0.563039 6_1:-65931902 Msa0891350:CDS
CTGAAGAGTATAACATCTCA+AGG 0.563428 6_1:-65929402 Msa0891350:exon
GCATCAAAGGAAGGCAGAGA+TGG 0.563589 6_1:-65931133 Msa0891350:CDS
TGAAGGCGAGGCGGATGAAG+AGG 0.569467 6_1:-65931964 Msa0891350:CDS
AGAGTTAGTGAAGAAATTGG+AGG 0.570910 6_1:-65929589 Msa0891350:intron
GAAGTAACGCCTTCGTGACA+AGG 0.577339 6_1:+65929463 None:intergenic
GATGGCAGAGGTGTGGTGAA+GGG 0.578304 6_1:-65931917 Msa0891350:CDS
AGAGTTGTTATTGTTGGTGA+AGG 0.587021 6_1:-65931981 Msa0891350:CDS
GTGAATCCCAAGTTGAGCCC+AGG 0.593707 6_1:+65929843 None:intergenic
CAGCTAACTGGTGAAACGGT+GGG 0.599390 6_1:-65931180 Msa0891350:CDS
CATCGACAAAGCTGTGCAAG+AGG 0.602935 6_1:-65929662 Msa0891350:CDS
GATGAAGAGGAAGGTGGTGA+CGG 0.603199 6_1:-65931951 Msa0891350:CDS
GTTGAAGTTGGAGATGGCAG+AGG 0.604674 6_1:-65931929 Msa0891350:CDS
TTTGCAAAATTCACATGCAG+GGG 0.610464 6_1:-65929250 Msa0891350:three_prime_UTR
GCAGCTAACTGGTGAAACGG+TGG 0.613685 6_1:-65931181 Msa0891350:intron
CAAGACACTCATGCCTAGAG+AGG 0.614658 6_1:-65931669 Msa0891350:intron
TGTTATTGTTGGTGAAGGCG+AGG 0.617928 6_1:-65931976 Msa0891350:CDS
AGCAGATATGCATCAAAGGA+AGG 0.629113 6_1:-65931142 Msa0891350:CDS
GTGACGGTTGAAGTTGGAGA+TGG 0.630101 6_1:-65931935 Msa0891350:CDS
GGCGAGGCGGATGAAGAGGA+AGG 0.641172 6_1:-65931960 Msa0891350:CDS
ATCGACAAAGCTGTGCAAGA+GGG 0.646090 6_1:-65929661 Msa0891350:CDS
GAAGAAGGTTGTGACGAGGA+AGG 0.648882 6_1:-65931887 Msa0891350:CDS
GAGGCGGATGAAGAGGAAGG+TGG 0.653696 6_1:-65931957 Msa0891350:CDS
GAAGGTTGTGACGAGGAAGG+TGG 0.661143 6_1:-65931884 Msa0891350:CDS
GATTATGTTCCTTGTCACGA+AGG 0.661791 6_1:-65929472 Msa0891350:CDS
ACTTCTTGAAGTCATAACCT+GGG 0.673767 6_1:-65929860 Msa0891350:CDS
AGGTGGTTATGGGACTCTAG+AGG 0.678112 6_1:-65929884 Msa0891350:CDS
AGTTGGAGATGGCAGAGGTG+TGG 0.679898 6_1:-65931924 Msa0891350:CDS
TAGGTGCTGATACAATTATG+TGG 0.681947 6_1:+65929617 None:intergenic
GGACGAAGAAGGTTGTGACG+AGG 0.699333 6_1:-65931891 Msa0891350:CDS
TATTGTTGGTGAAGGCGAGG+CGG 0.702358 6_1:-65931973 Msa0891350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGTAATAATAAACAAA+TGG - chr6_1:65929764-65929783 Msa0891350:intron 10.0%
!! ATGAAAAAAGTGAATAATAA+AGG + chr6_1:65929570-65929589 None:intergenic 15.0%
!!! TTAAAAAACATAAGTTTGTT+AGG + chr6_1:65930202-65930221 None:intergenic 15.0%
!! TCATTCACTATATAAAAAAT+GGG - chr6_1:65931057-65931076 Msa0891350:intron 15.0%
!! TGAACTACTTAATAATATTT+AGG + chr6_1:65931353-65931372 None:intergenic 15.0%
!!! AGAATTGAATTAGTATTTTT+AGG + chr6_1:65931786-65931805 None:intergenic 15.0%
!!! TTGTTAAAGTTAGTTTCTTT+TGG - chr6_1:65929675-65929694 Msa0891350:CDS 20.0%
!! TACATGATAAAACTAAAGAA+AGG + chr6_1:65930139-65930158 None:intergenic 20.0%
!!! TTTTAGCCAAATATGTTTAA+GGG + chr6_1:65930626-65930645 None:intergenic 20.0%
!!! ATTTTAGCCAAATATGTTTA+AGG + chr6_1:65930627-65930646 None:intergenic 20.0%
!!! TTTTCAAAGACTATTATTTC+TGG - chr6_1:65930847-65930866 Msa0891350:intron 20.0%
!! CTCATTCACTATATAAAAAA+TGG - chr6_1:65931056-65931075 Msa0891350:intron 20.0%
!! CATTCACTATATAAAAAATG+GGG - chr6_1:65931058-65931077 Msa0891350:intron 20.0%
!! GAATTTAATGCAAAAAACAT+AGG + chr6_1:65931201-65931220 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr6_1:65931773-65931792 None:intergenic 20.0%
!! ACTTATTCAAACTATTTGAA+AGG + chr6_1:65931965-65931984 None:intergenic 20.0%
! TTAACTTAAAGTACAGAACA+AGG + chr6_1:65929625-65929644 None:intergenic 25.0%
!!! AAAGTTAGTTTCTTTTGGAT+AGG - chr6_1:65929680-65929699 Msa0891350:CDS 25.0%
! TTAGAAGTAGTTATGATTGA+CGG - chr6_1:65930353-65930372 Msa0891350:intron 25.0%
! CTAGTATATGCTTTATGATT+TGG - chr6_1:65930427-65930446 Msa0891350:intron 25.0%
! ATTTGGAAGTCATTCATAAA+AGG - chr6_1:65930444-65930463 Msa0891350:intron 25.0%
! ACGAAAGTAGATGTAAAAAA+TGG + chr6_1:65930697-65930716 None:intergenic 25.0%
!!! TTTTTTACATCTACTTTCGT+TGG - chr6_1:65930697-65930716 Msa0891350:intron 25.0%
! TGTGTGCTATAATTATTGTA+TGG - chr6_1:65931120-65931139 Msa0891350:CDS 25.0%
! TTATTGTATGGAATCTGTTT+CGG - chr6_1:65931132-65931151 Msa0891350:CDS 25.0%
!! ATTTAGGTTCCTTAACAAAA+TGG + chr6_1:65931337-65931356 None:intergenic 25.0%
!! ATGCTATTACTAGTTTAACT+AGG - chr6_1:65931377-65931396 Msa0891350:intron 25.0%
! TATTATGTTTGATTCATCAC+AGG - chr6_1:65931637-65931656 Msa0891350:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr6_1:65931774-65931793 None:intergenic 25.0%
AAAGTACAGAACAAGGAAAT+AGG + chr6_1:65929618-65929637 None:intergenic 30.0%
!!! ACTCTTTTGTTTTACTTCAG+TGG - chr6_1:65929794-65929813 Msa0891350:intron 30.0%
AAGAATAGTACACCTTACTT+TGG - chr6_1:65930068-65930087 Msa0891350:intron 30.0%
AAGCATTAAAGACTGAGATA+TGG + chr6_1:65930169-65930188 None:intergenic 30.0%
!!! TTAAACCCTTTTGACTTAAG+AGG - chr6_1:65930218-65930237 Msa0891350:intron 30.0%
GTAAACCTCTTAAGTCAAAA+GGG + chr6_1:65930226-65930245 None:intergenic 30.0%
ACAATATTCATGATTAGGCA+TGG + chr6_1:65930248-65930267 None:intergenic 30.0%
TGGCAACAATATTCATGATT+AGG + chr6_1:65930253-65930272 None:intergenic 30.0%
AATCATGAATATTGTTGCCA+AGG - chr6_1:65930253-65930272 Msa0891350:intron 30.0%
GTCATTCATAAAAGGTAATG+AGG - chr6_1:65930452-65930471 Msa0891350:intron 30.0%
TTAATTAGTGCTCCACTTTA+AGG - chr6_1:65930476-65930495 Msa0891350:intron 30.0%
TGATTTGATTCTCCTTAAAG+TGG + chr6_1:65930491-65930510 None:intergenic 30.0%
AGGATATATGAAGTCACATT+TGG + chr6_1:65930543-65930562 None:intergenic 30.0%
! TTTTGTACCAAACTTACTCA+TGG - chr6_1:65930731-65930750 Msa0891350:intron 30.0%
ATCAAAACCATGAGTAAGTT+TGG + chr6_1:65930741-65930760 None:intergenic 30.0%
!!! CTCATGGTTTTGATATAGAA+AGG - chr6_1:65930747-65930766 Msa0891350:intron 30.0%
ACTATTTCATGACATGTTAC+AGG + chr6_1:65930822-65930841 None:intergenic 30.0%
AAATTAGTGACTGTTAGAGA+AGG - chr6_1:65930896-65930915 Msa0891350:intron 30.0%
CTTAAGGTCATCTAATAAAC+TGG + chr6_1:65931166-65931185 None:intergenic 30.0%
AACTTATGCAAATTACATGC+AGG - chr6_1:65931227-65931246 Msa0891350:intron 30.0%
AAATGGTACAAGTCAATTAC+CGG + chr6_1:65931320-65931339 None:intergenic 30.0%
!! TGACTTGTACCATTTTGTTA+AGG - chr6_1:65931325-65931344 Msa0891350:intron 30.0%
TCAAGAGTTAGTGAAGAAAT+TGG - chr6_1:65931539-65931558 Msa0891350:intron 30.0%
! GAGTTGTTATACCCTAATTT+TGG - chr6_1:65931759-65931778 Msa0891350:intron 30.0%
TATTTGCAAAATTCACATGC+AGG - chr6_1:65931879-65931898 Msa0891350:CDS 30.0%
ATTTGCAAAATTCACATGCA+GGG - chr6_1:65931880-65931899 Msa0891350:CDS 30.0%
ATTGAAAGAGACTTTGACAT+AGG + chr6_1:65931921-65931940 None:intergenic 30.0%
AACAATAACAACTCTGTCAC+CGG + chr6_1:65929145-65929164 None:intergenic 35.0%
! AGAGTTGTTATTGTTGGTGA+AGG - chr6_1:65929150-65929169 Msa0891350:three_prime_UTR 35.0%
! GATGATTTTATTGCCTTACC+AGG - chr6_1:65930032-65930051 Msa0891350:intron 35.0%
TCTGTAATGCAACCAAAGTA+AGG + chr6_1:65930083-65930102 None:intergenic 35.0%
GGTAAACCTCTTAAGTCAAA+AGG + chr6_1:65930227-65930246 None:intergenic 35.0%
ACAGTGTATCAGAAATACCT+TGG + chr6_1:65930273-65930292 None:intergenic 35.0%
TCTCTAATCATCATGGCATT+AGG + chr6_1:65930563-65930582 None:intergenic 35.0%
CAAATATGTTTAAGGGTCTC+AGG + chr6_1:65930619-65930638 None:intergenic 35.0%
CTGAGACCCTTAAACATATT+TGG - chr6_1:65930617-65930636 Msa0891350:intron 35.0%
!! AAGTTTTGTCTTTGTGTGAC+TGG + chr6_1:65930922-65930941 None:intergenic 35.0%
ACTTGTCATTCACTCTTTCT+TGG - chr6_1:65930938-65930957 Msa0891350:intron 35.0%
CTTGTCATTCACTCTTTCTT+GGG - chr6_1:65930939-65930958 Msa0891350:intron 35.0%
GTGCAACATGTAATCAATCT+CGG - chr6_1:65931002-65931021 Msa0891350:intron 35.0%
!! GACCATTGATTTAGATCGAA+TGG - chr6_1:65931083-65931102 Msa0891350:intron 35.0%
GACCATTCGATCTAAATCAA+TGG + chr6_1:65931088-65931107 None:intergenic 35.0%
TGCAAAAAACATAGGAGAAC+AGG + chr6_1:65931193-65931212 None:intergenic 35.0%
TTATGCAAATTACATGCAGG+TGG - chr6_1:65931230-65931249 Msa0891350:intron 35.0%
AAATTACATGCAGGTGGTTA+TGG - chr6_1:65931236-65931255 Msa0891350:intron 35.0%
AATTACATGCAGGTGGTTAT+GGG - chr6_1:65931237-65931256 Msa0891350:intron 35.0%
AACTTCTTGAAGTCATAACC+TGG - chr6_1:65931270-65931289 Msa0891350:intron 35.0%
ACTTCTTGAAGTCATAACCT+GGG - chr6_1:65931271-65931290 Msa0891350:intron 35.0%
!! TAGGTGCTGATACAATTATG+TGG + chr6_1:65931517-65931536 None:intergenic 35.0%
TCTTCACTAACTCTTGATGT+AGG + chr6_1:65931536-65931555 None:intergenic 35.0%
AGAGTTAGTGAAGAAATTGG+AGG - chr6_1:65931542-65931561 Msa0891350:intron 35.0%
GATGTTATACTCTTCAGGAT+AGG + chr6_1:65931726-65931745 None:intergenic 35.0%
CTTGAGATGTTATACTCTTC+AGG + chr6_1:65931731-65931750 None:intergenic 35.0%
! CTGAAGAGTATAACATCTCA+AGG - chr6_1:65931729-65931748 Msa0891350:intron 35.0%
TATAACATCTCAAGGTAGCT+AGG - chr6_1:65931737-65931756 Msa0891350:intron 35.0%
TTTGCAAAATTCACATGCAG+GGG - chr6_1:65931881-65931900 Msa0891350:CDS 35.0%
! GGTGACAGAGTTGTTATTGT+TGG - chr6_1:65929144-65929163 Msa0891350:three_prime_UTR 40.0%
CTCTGCAAGAGACAATAACA+TGG + chr6_1:65929435-65929454 None:intergenic 40.0%
! CTTTTCTCACATACCTCTCT+AGG + chr6_1:65929478-65929497 None:intergenic 40.0%
CTGTTCCATTTCTTGACCAT+TGG - chr6_1:65929917-65929936 Msa0891350:intron 40.0%
AGGATCCAATGGTCAAGAAA+TGG + chr6_1:65929925-65929944 None:intergenic 40.0%
AGCTGCAAAATAGGATCCAA+TGG + chr6_1:65929936-65929955 None:intergenic 40.0%
! GATCCTATTTTGCAGCTAAC+TGG - chr6_1:65929939-65929958 Msa0891350:intron 40.0%
TCACCAGTTAGCTGCAAAAT+AGG + chr6_1:65929945-65929964 None:intergenic 40.0%
TTTGCAGCTAACTGGTGAAA+CGG - chr6_1:65929947-65929966 Msa0891350:intron 40.0%
CTGTAGCAGATATGCATCAA+AGG - chr6_1:65929985-65930004 Msa0891350:intron 40.0%
AGCAGATATGCATCAAAGGA+AGG - chr6_1:65929989-65930008 Msa0891350:intron 40.0%
! GGTGTACTATTCTTTAGCTC+AGG + chr6_1:65930062-65930081 None:intergenic 40.0%
GGTGTAACAAGTCTTTACAC+TGG - chr6_1:65930374-65930393 Msa0891350:intron 40.0%
GTAACAAGTCTTTACACTGG+CGG - chr6_1:65930377-65930396 Msa0891350:intron 40.0%
GAGTCACTCTCTAATCATCA+TGG + chr6_1:65930570-65930589 None:intergenic 40.0%
AGAGAGTGACTCTTCAATAC+TGG - chr6_1:65930578-65930597 Msa0891350:intron 40.0%
! TCTGAGAAACCATGGTTTTC+TGG - chr6_1:65930663-65930682 Msa0891350:intron 40.0%
GTACTTCAACCAGAAAACCA+TGG + chr6_1:65930675-65930694 None:intergenic 40.0%
GGTGAGAAGGGATCTTAATT+TGG - chr6_1:65930980-65930999 Msa0891350:intron 40.0%
!! CTCGGCCATTGATTTGAAAT+CGG - chr6_1:65931020-65931039 Msa0891350:intron 40.0%
GTCGTCCGATTTCAAATCAA+TGG + chr6_1:65931028-65931047 None:intergenic 40.0%
TAGGAGAACAGGAACACTTA+AGG + chr6_1:65931182-65931201 None:intergenic 40.0%
! GTGGGACTAGTAAATGTTGA+TGG - chr6_1:65931422-65931441 Msa0891350:intron 40.0%
ACAATTATGTGGTGCGCATT+TGG + chr6_1:65931506-65931525 None:intergenic 40.0%
GATTATGTTCCTTGTCACGA+AGG - chr6_1:65931659-65931678 Msa0891350:intron 40.0%
TTCAAAGTTGAGCTGCAAGA+TGG - chr6_1:65931688-65931707 Msa0891350:intron 40.0%
! TGTTATTGTTGGTGAAGGCG+AGG - chr6_1:65929155-65929174 Msa0891350:three_prime_UTR 45.0%
TGGTGACAGGTGAAAGATGT+TGG - chr6_1:65929267-65929286 Msa0891350:three_prime_UTR 45.0%
GGTGACAGGTGAAAGATGTT+GGG - chr6_1:65929268-65929287 Msa0891350:three_prime_UTR 45.0%
GTGACAGGTGAAAGATGTTG+GGG - chr6_1:65929269-65929288 Msa0891350:three_prime_UTR 45.0%
GGTGAAAGATGTTGGGGTTA+AGG - chr6_1:65929275-65929294 Msa0891350:three_prime_UTR 45.0%
AGATGTTGGGGTTAAGGAGA+AGG - chr6_1:65929281-65929300 Msa0891350:three_prime_UTR 45.0%
TCTCTAGGCATGAGTGTCTT+GGG + chr6_1:65929463-65929482 None:intergenic 45.0%
! TTCTTTAGCTCAGGCTAACC+TGG + chr6_1:65930053-65930072 None:intergenic 45.0%
! GCTTTGACTCTGAGAAACCA+TGG - chr6_1:65930655-65930674 Msa0891350:intron 45.0%
TCTCACCCTCTATCTTGCAA+GGG + chr6_1:65930967-65930986 None:intergenic 45.0%
TTCTCACCCTCTATCTTGCA+AGG + chr6_1:65930968-65930987 None:intergenic 45.0%
TTGCAAGATAGAGGGTGAGA+AGG - chr6_1:65930967-65930986 Msa0891350:intron 45.0%
TGCAAGATAGAGGGTGAGAA+GGG - chr6_1:65930968-65930987 Msa0891350:intron 45.0%
TCATAACCTGGGCTCAACTT+GGG - chr6_1:65931282-65931301 Msa0891350:intron 45.0%
ACTTGGGATTCACGACAAAC+CGG - chr6_1:65931298-65931317 Msa0891350:intron 45.0%
ACATTTACTAGTCCCACCTG+CGG + chr6_1:65931419-65931438 None:intergenic 45.0%
ATCGACAAAGCTGTGCAAGA+GGG - chr6_1:65931470-65931489 Msa0891350:intron 45.0%
! TATTGTTGGTGAAGGCGAGG+CGG - chr6_1:65929158-65929177 Msa0891350:three_prime_UTR 50.0%
GATGAAGAGGAAGGTGGTGA+CGG - chr6_1:65929180-65929199 Msa0891350:three_prime_UTR 50.0%
!! AAGGTGGTGACGGTTGAAGT+TGG - chr6_1:65929190-65929209 Msa0891350:three_prime_UTR 50.0%
GTGACGGTTGAAGTTGGAGA+TGG - chr6_1:65929196-65929215 Msa0891350:three_prime_UTR 50.0%
GTTGAAGTTGGAGATGGCAG+AGG - chr6_1:65929202-65929221 Msa0891350:three_prime_UTR 50.0%
GTGAAGGGATTGGACGAAGA+AGG - chr6_1:65929229-65929248 Msa0891350:three_prime_UTR 50.0%
GAAGAAGGTTGTGACGAGGA+AGG - chr6_1:65929244-65929263 Msa0891350:three_prime_UTR 50.0%
TGTTGGGGTTAAGGAGAAGG+TGG - chr6_1:65929284-65929303 Msa0891350:three_prime_UTR 50.0%
CTCTCTAGGCATGAGTGTCT+TGG + chr6_1:65929464-65929483 None:intergenic 50.0%
CAAGACACTCATGCCTAGAG+AGG - chr6_1:65929462-65929481 Msa0891350:CDS 50.0%
CAGCTAACTGGTGAAACGGT+GGG - chr6_1:65929951-65929970 Msa0891350:intron 50.0%
GCATCAAAGGAAGGCAGAGA+TGG - chr6_1:65929998-65930017 Msa0891350:intron 50.0%
TAGCTCAGGCTAACCTGGTA+AGG + chr6_1:65930048-65930067 None:intergenic 50.0%
TAAGGGTCTCAGGCAAAGTC+AGG + chr6_1:65930609-65930628 None:intergenic 50.0%
TGGGATCCCTTGCAAGATAG+AGG - chr6_1:65930958-65930977 Msa0891350:intron 50.0%
GGGATCCCTTGCAAGATAGA+GGG - chr6_1:65930959-65930978 Msa0891350:intron 50.0%
AGGTGGTTATGGGACTCTAG+AGG - chr6_1:65931247-65931266 Msa0891350:intron 50.0%
GTCATAACCTGGGCTCAACT+TGG - chr6_1:65931281-65931300 Msa0891350:intron 50.0%
TTTGACATTCCACAACCCGC+AGG - chr6_1:65931400-65931419 Msa0891350:intron 50.0%
CATTTACTAGTCCCACCTGC+GGG + chr6_1:65931418-65931437 None:intergenic 50.0%
CATCGACAAAGCTGTGCAAG+AGG - chr6_1:65931469-65931488 Msa0891350:intron 50.0%
GAAGTAACGCCTTCGTGACA+AGG + chr6_1:65931671-65931690 None:intergenic 50.0%
AGTTGGAGATGGCAGAGGTG+TGG - chr6_1:65929207-65929226 Msa0891350:three_prime_UTR 55.0%
! AGATGGCAGAGGTGTGGTGA+AGG - chr6_1:65929213-65929232 Msa0891350:three_prime_UTR 55.0%
! GATGGCAGAGGTGTGGTGAA+GGG - chr6_1:65929214-65929233 Msa0891350:three_prime_UTR 55.0%
! CAGAGGTGTGGTGAAGGGAT+TGG - chr6_1:65929219-65929238 Msa0891350:three_prime_UTR 55.0%
GGACGAAGAAGGTTGTGACG+AGG - chr6_1:65929240-65929259 Msa0891350:three_prime_UTR 55.0%
GAAGGTTGTGACGAGGAAGG+TGG - chr6_1:65929247-65929266 Msa0891350:three_prime_UTR 55.0%
TGGGGTTAAGGAGAAGGTGG+CGG - chr6_1:65929287-65929306 Msa0891350:three_prime_UTR 55.0%
CATCGTCTCCAACCTTCCAC+CGG + chr6_1:65929329-65929348 None:intergenic 55.0%
GAAGGTTGGAGACGATGGTG+TGG - chr6_1:65929332-65929351 Msa0891350:three_prime_UTR 55.0%
GCAGCTAACTGGTGAAACGG+TGG - chr6_1:65929950-65929969 Msa0891350:intron 55.0%
! GTGAATCCCAAGTTGAGCCC+AGG + chr6_1:65931291-65931310 None:intergenic 55.0%
ACATTCCACAACCCGCAGGT+GGG - chr6_1:65931404-65931423 Msa0891350:intron 55.0%
TGAAGGCGAGGCGGATGAAG+AGG - chr6_1:65929167-65929186 Msa0891350:three_prime_UTR 60.0%
GAGGCGGATGAAGAGGAAGG+TGG - chr6_1:65929174-65929193 Msa0891350:three_prime_UTR 60.0%
GTGACGAGGAAGGTGGTGAC+AGG - chr6_1:65929254-65929273 Msa0891350:three_prime_UTR 60.0%
! GGTTAAGGAGAAGGTGGCGG+CGG - chr6_1:65929290-65929309 Msa0891350:three_prime_UTR 60.0%
CGGTGGAAGGTTGGAGACGA+TGG - chr6_1:65929327-65929346 Msa0891350:three_prime_UTR 60.0%
GACATTCCACAACCCGCAGG+TGG - chr6_1:65931403-65931422 Msa0891350:intron 60.0%
GGCGAGGCGGATGAAGAGGA+AGG - chr6_1:65929171-65929190 Msa0891350:three_prime_UTR 65.0%
! GAGAAGGTGGCGGCGGTTGT+GGG - chr6_1:65929297-65929316 Msa0891350:three_prime_UTR 65.0%
! CTAGTCCCACCTGCGGGTTG+TGG + chr6_1:65931412-65931431 None:intergenic 65.0%
! GGAGAAGGTGGCGGCGGTTG+TGG - chr6_1:65929296-65929315 Msa0891350:three_prime_UTR 70.0%
! AAGGTGGCGGCGGTTGTGGG+TGG - chr6_1:65929300-65929319 Msa0891350:three_prime_UTR 70.0%
! TGTGGGTGGTGGCCGGTGGA+AGG - chr6_1:65929314-65929333 Msa0891350:three_prime_UTR 70.0%
! GGTGGTGGCCGGTGGAAGGT+TGG - chr6_1:65929318-65929337 Msa0891350:three_prime_UTR 70.0%
GTGGCGGCGGTTGTGGGTGG+TGG - chr6_1:65929303-65929322 Msa0891350:three_prime_UTR 75.0%
! CGGCGGTTGTGGGTGGTGGC+CGG - chr6_1:65929307-65929326 Msa0891350:three_prime_UTR 75.0%
! CGGTTGTGGGTGGTGGCCGG+TGG - chr6_1:65929310-65929329 Msa0891350:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 65929133 65932020 65929133 ID=Msa0891350;Name=Msa0891350
chr6_1 mRNA 65929133 65932020 65929133 ID=Msa0891350-mRNA-1;Parent=Msa0891350;Name=Msa0891350-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.8|0.66|0.83|0.8|0.66|6|288|186
chr6_1 exon 65929133 65929494 65929133 ID=Msa0891350-mRNA-1:exon:11892;Parent=Msa0891350-mRNA-1
chr6_1 exon 65929590 65929731 65929590 ID=Msa0891350-mRNA-1:exon:11891;Parent=Msa0891350-mRNA-1
chr6_1 exon 65929834 65929904 65929834 ID=Msa0891350-mRNA-1:exon:11890;Parent=Msa0891350-mRNA-1
chr6_1 exon 65931100 65931199 65931100 ID=Msa0891350-mRNA-1:exon:11889;Parent=Msa0891350-mRNA-1
chr6_1 exon 65931670 65931700 65931670 ID=Msa0891350-mRNA-1:exon:11888;Parent=Msa0891350-mRNA-1
chr6_1 exon 65931878 65932020 65931878 ID=Msa0891350-mRNA-1:exon:11887;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65931878 65932020 65931878 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65931670 65931700 65931670 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65931100 65931199 65931100 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65929834 65929904 65929834 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65929590 65929731 65929590 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 CDS 65929421 65929494 65929421 ID=Msa0891350-mRNA-1:cds;Parent=Msa0891350-mRNA-1
chr6_1 three_prime_UTR 65929133 65929420 65929133 ID=Msa0891350-mRNA-1:three_prime_utr;Parent=Msa0891350-mRNA-1
Gene Sequence

>Msa0891350

ATGAGGTTACCGGTGACAGAGTTGTTATTGTTGGTGAAGGCGAGGCGGATGAAGAGGAAGGTGGTGACGGTTGAAGTTGGAGATGGCAGAGGTGTGGTGAAGGGATTGGACGAAGAAGGTTGTGACGAGGAAGGTGGTGACAGAGTTATTCCCAAGACACTCATGCCTAGAGAGCTAACTGGTGAAACGGTGGGAGAAGTAAAATCTGTAGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAAGCATTCAGATGATTTTATTGCCTTACCAGGTGGTTATGGGACTCTAGAGGAACTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATTCACGACAAACCGGTGGGACTAGTAAATGTTGATGGATACTTTAATTCGTTACTTTCATTCATCGACAAAGCTGTGCAAGAGGGATTAATTAGTCCAAATGCGCACCACATAATTGTATCAGCACCTACATCAAGAGTTAGTGAAGAAATTGGAGGATTATGTTCCTTGTCACGAAGGCGTTACTTCAAAGTTGAGCTGCAAGATGGAACAAGAGCTAGCCTATCCTGA
Protein sequence

>Msa0891350

MRLPVTELLLLVKARRMKRKVVTVEVGDGRGVVKGLDEEGCDEEGGDRVIPKTLMPRELTGETVGEVKSVADMHQRKAEMAKHSDDFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVQEGLISPNAHHIIVSAPTSRVSEEIGGLCSLSRRRYFKVELQDGTRASLS*