AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142220 MtrunA17_Chr3g0098471 83.951 162 22 1 468 629 20 177 4.67e-73 233
Msa0142220 MtrunA17_Chr3g0098461 66.667 159 47 2 129 282 2 159 1.15e-64 210
Msa0142220 MtrunA17_Chr3g0098461 69.014 142 43 1 328 469 19 159 5.90e-61 200
Msa0142220 MtrunA17_Chr4g0038111 68.657 67 21 0 563 629 321 387 1.27e-22 102
Msa0142220 MtrunA17_Chr0c05g0492161 50.538 93 41 1 130 217 3 95 1.88e-21 90.5
Msa0142220 MtrunA17_Chr0c05g0492161 54.545 77 35 0 328 404 19 95 2.39e-20 87.4
Msa0142220 MtrunA17_Chr1g0163591 47.887 71 36 1 560 629 271 341 6.31e-14 75.1
Msa0142220 MtrunA17_Chr3g0090311 37.931 116 66 5 164 276 45 157 1.16e-12 67.0
Msa0142220 MtrunA17_Chr3g0090311 36.975 119 69 5 348 463 42 157 4.41e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142220 AT3G18610.1 45.714 70 37 1 558 627 362 430 1.04e-13 74.7
Msa0142220 AT3G18610.3 45.714 70 37 1 558 627 332 400 1.12e-13 74.7
Msa0142220 AT3G18610.2 45.714 70 37 1 558 627 302 370 1.20e-13 74.7
Msa0142220 AT1G48920.1 40.964 83 47 2 548 629 265 346 1.49e-12 70.9

Find 161 sgRNAs with CRISPR-Local

Find 702 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTGCATAACGAATTT+TGG 0.055280 1_4:+1050466 None:intergenic
CATAAGGATGGAAAGCTTAA+AGG 0.173752 1_4:-1043342 Msa0142220:CDS
GAAGCTGTTTCTTCTAAAAT+AGG 0.182499 1_4:-1050962 Msa0142220:CDS
TGCGGGTGCACTTCCTATTT+TGG 0.183725 1_4:+1043891 None:intergenic
TAAAGATCGTCTTTCTTTAC+AGG 0.196172 1_4:+1044106 None:intergenic
GAAGTTGTTCCTTCCAAAAT+AGG 0.222757 1_4:-1043904 Msa0142220:CDS
GAAGAAACAGCTTCTGCTTC+AGG 0.224450 1_4:+1050971 None:intergenic
GGAGGCTTTGTCAGGGGTTT+TGG 0.242686 1_4:-1051808 Msa0142220:intron
CAGAAGATTCGTCAGATTCT+TGG 0.263120 1_4:+1043848 None:intergenic
GAACTATCAGCCTTCTTTGC+GGG 0.314916 1_4:+1043874 None:intergenic
GTAGATATGGACGCCACTTC+CGG 0.331632 1_4:+1051987 None:intergenic
ACTCCTTCTCTCCGATAGAT+AGG 0.335350 1_4:+1050221 None:intergenic
TCATCTTCTGAAGAATCTTC+TGG 0.335928 1_4:-1044079 Msa0142220:CDS
ACTCCTTCTCTCCGAAAGAT+AGG 0.337370 1_4:+1046029 None:intergenic
TGACGTGGATCTTGAAAGTT+TGG 0.353226 1_4:-1046177 Msa0142220:CDS
TGACGTGGATCTTGAAAGTT+TGG 0.353226 1_4:-1050369 Msa0142220:CDS
CAAGAATCTGACGAATCTTC+TGG 0.369595 1_4:-1043847 Msa0142220:CDS
AAGCTGTTTCTTCTAAAATA+GGG 0.371461 1_4:-1050961 Msa0142220:CDS
GTGGCGGAGGAGGCTTTGTC+AGG 0.376610 1_4:-1051816 Msa0142220:CDS
ATCCATCAGAGTTGGTCTTC+GGG 0.381778 1_4:+1049915 None:intergenic
AACAGGCACTTGATAAGAAT+GGG 0.392124 1_4:-1052048 Msa0142220:intron
GATGGAAAGCTTAAAGGCTT+TGG 0.397596 1_4:-1043336 Msa0142220:CDS
TAGATATGGACGCCACTTCC+GGG 0.401365 1_4:+1051988 None:intergenic
GCAAGCTGAGGAAGAAGTTA+AGG 0.409404 1_4:-1047530 Msa0142220:CDS
ATTACTCTTCTTCGAAAAGA+TGG 0.410597 1_4:-1045698 Msa0142220:CDS
ATTACTCTTCTTCGAAAAGA+TGG 0.410597 1_4:-1049894 Msa0142220:CDS
GAGGAAATATACCTTGGTAT+AGG 0.412235 1_4:+1042899 None:intergenic
GCGTTTCTTAAGACCACATC+CGG 0.415976 1_4:+1050437 None:intergenic
TCTTCGTTAACCCTATCTTT+CGG 0.418866 1_4:-1046040 Msa0142220:CDS
TCAGAGTTGGTCTTCGGAAC+GGG 0.425090 1_4:+1045724 None:intergenic
AATCCATCAGAGTTGGTCTT+CGG 0.430864 1_4:+1049914 None:intergenic
TGTACGTCTTGCTTCTCATA+AGG 0.432229 1_4:-1043358 Msa0142220:CDS
GTGAAGAGCAATTATATTGA+TGG 0.434863 1_4:-1045658 Msa0142220:CDS
GTGAAGAGCAATTATATTGA+TGG 0.435563 1_4:-1049854 Msa0142220:CDS
TCCTTGAGGATGAGTAGATA+TGG 0.437849 1_4:+1051974 None:intergenic
TGAAAAGGACTTAAGGGATA+AGG 0.439015 1_4:-1045982 Msa0142220:intron
GAAAGTAGTCAAAATTAGTT+CGG 0.441030 1_4:-1047449 Msa0142220:CDS
TGAAAAGGACTTAAGGGATA+AGG 0.447385 1_4:-1050174 Msa0142220:intron
AAACGCTGAAAAGGACTTAA+GGG 0.449883 1_4:-1045988 Msa0142220:CDS
AAGAAACAGCTTCTGCTTCA+GGG 0.451779 1_4:+1050972 None:intergenic
GAAGGAACAACTTCTGCTGC+AGG 0.453852 1_4:+1043913 None:intergenic
AAGCGCTGAAAAGGACTTAA+GGG 0.454905 1_4:-1050180 Msa0142220:CDS
AAAACGCTGAAAAGGACTTA+AGG 0.455617 1_4:-1045989 Msa0142220:CDS
ACTTGTGGAAAACGCTGAAA+AGG 0.460488 1_4:-1045997 Msa0142220:CDS
TAACAGGCACTTGATAAGAA+TGG 0.463075 1_4:-1052049 Msa0142220:intron
ACTTGTGGAAAGCGCTGAAA+AGG 0.467490 1_4:-1050189 Msa0142220:CDS
AAAGCGCTGAAAAGGACTTA+AGG 0.468986 1_4:-1050181 Msa0142220:CDS
AAAGATAGGGTTAACGAAGA+TGG 0.472513 1_4:+1046043 None:intergenic
TATGTTGGGAACTTATCCTT+CGG 0.474371 1_4:-1043511 Msa0142220:CDS
TCAGCTGAAAGTGGCGGAGG+AGG 0.475866 1_4:-1051826 Msa0142220:CDS
TCAGAGTTGGTCTTCGGGAC+GGG 0.477721 1_4:+1049920 None:intergenic
GATCTTGAAAGTTTGGAGAA+TGG 0.482941 1_4:-1046170 Msa0142220:CDS
GATCTTGAAAGTTTGGAGAA+TGG 0.482941 1_4:-1050362 Msa0142220:intron
TTACTCTTCTTCGAAAAGAT+GGG 0.485859 1_4:-1045697 Msa0142220:CDS
TTACTCTTCTTCGAAAAGAT+GGG 0.485859 1_4:-1049893 Msa0142220:CDS
GACTTCAAGAAGCCCGGAAG+TGG 0.490497 1_4:-1052000 Msa0142220:CDS
TCCTGTGAAGTCTGGAACGG+AGG 0.492616 1_4:-1050495 Msa0142220:intron
CGAGGTTGCTGCCAAACAAA+AGG 0.496709 1_4:-1052618 Msa0142220:intron
AGGAAGTGCACCCGCAAAGA+AGG 0.501050 1_4:-1043884 Msa0142220:CDS
AACCCTATCTTTCGGAGAGA+AGG 0.502877 1_4:-1046032 Msa0142220:CDS
AGTTTCTTCAAAGAAGCAAA+AGG 0.509361 1_4:-1044354 Msa0142220:CDS
ATGGACTGTTACAGGCGTGC+AGG 0.513073 1_4:-1042937 Msa0142220:intron
GTGTGAAGACATTATATGTT+GGG 0.513802 1_4:-1043525 Msa0142220:CDS
AGTGACTTCAAAGAAGCAAA+AGG 0.513805 1_4:-1047506 Msa0142220:CDS
TGACCACAACCATTACTCTT+CGG 0.514416 1_4:+1046074 None:intergenic
TGACCACAACCATTACTCTT+CGG 0.514416 1_4:+1050266 None:intergenic
TGAGGTTGCTGCCAAACAAA+AGG 0.514624 1_4:-1044327 Msa0142220:intron
CGTGTGAAGACATTATATGT+TGG 0.515977 1_4:-1043526 Msa0142220:CDS
AATCCATCAGAGTTGGTCTT+CGG 0.518936 1_4:+1045718 None:intergenic
CGACATATTTAAGATTCTCG+TGG 0.520223 1_4:-1046213 Msa0142220:intron
CGACATATTTAAGATTCTCG+TGG 0.520223 1_4:-1050405 Msa0142220:CDS
AGAACTATCAGCCTTCTTTG+CGG 0.521392 1_4:+1043873 None:intergenic
AATATACCTTGGTATAGGCC+TGG 0.521736 1_4:+1042904 None:intergenic
TGAGGTTGCTGCTAAACAAA+AGG 0.528001 1_4:-1047476 Msa0142220:CDS
CGTCTTGCTTCTCATAAGGA+TGG 0.533795 1_4:-1043354 Msa0142220:CDS
AGTGACTTCAAAGAAGCAAA+AGG 0.536343 1_4:-1052645 Msa0142220:CDS
GTCCCGAAGACCAACTCTGA+TGG 0.538106 1_4:-1049917 Msa0142220:CDS
GTTCCGAAGACCAACTCTGA+TGG 0.541055 1_4:-1045721 Msa0142220:CDS
GCAAGCTGAGGAAGAAGTCA+AGG 0.547712 1_4:-1052669 Msa0142220:CDS
TGAAGAGCAATTATATTGAT+GGG 0.547887 1_4:-1045657 Msa0142220:CDS
TGAAGAGCAATTATATTGAT+GGG 0.547887 1_4:-1049853 Msa0142220:CDS
GAGCAATTATATTGATGGGA+AGG 0.549182 1_4:-1045653 Msa0142220:CDS
GAGCAATTATATTGATGGGA+AGG 0.549182 1_4:-1049849 Msa0142220:CDS
TTCTCCTGTGAAGTCTGGAA+CGG 0.549398 1_4:-1050498 Msa0142220:intron
AGGAGTCGCTTCTAAACTTG+TGG 0.551270 1_4:-1046012 Msa0142220:CDS
AGGAGTCGCTTCTAAACTTG+TGG 0.551270 1_4:-1050204 Msa0142220:CDS
ATCAGAGTTGGTCTTCGGGA+CGG 0.551912 1_4:+1049919 None:intergenic
CGTGCAGGATTCTATAAACC+AGG 0.552805 1_4:-1042922 Msa0142220:CDS
ATCAGAGTTGGTCTTCGGAA+CGG 0.553932 1_4:+1045723 None:intergenic
CTCCTTCTCTCCGAAAGATA+GGG 0.554373 1_4:+1046030 None:intergenic
AACTCAGCTGAAAGTGGCGG+AGG 0.557051 1_4:-1051829 Msa0142220:CDS
CGTTTCTTAAGACCACATCC+GGG 0.561543 1_4:+1050438 None:intergenic
GGCGGAGGAGGCTTTGTCAG+GGG 0.562222 1_4:-1051814 Msa0142220:CDS
AAGAAATGTGTCCCCGGATG+TGG 0.566003 1_4:-1050450 Msa0142220:CDS
AACCCTATCTATCGGAGAGA+AGG 0.566214 1_4:-1050224 Msa0142220:CDS
GATCGCCAAGACGCTATCCT+CGG 0.566309 1_4:-1046122 Msa0142220:CDS
GCAAGCTGTGGAAGAAGTCG+AGG 0.568949 1_4:-1044378 Msa0142220:CDS
TGGCGGAGGAGGCTTTGTCA+GGG 0.569871 1_4:-1051815 Msa0142220:CDS
AAACTTTCAAGATCCACGTC+AGG 0.572396 1_4:+1046179 None:intergenic
AAACTTTCAAGATCCACGTC+AGG 0.572396 1_4:+1050371 None:intergenic
ATCATGACGAAGAAGTTCGA+GGG 0.572521 1_4:-1045616 Msa0142220:CDS
ATCATGACGAAGAAGTTCGA+GGG 0.572521 1_4:-1049812 Msa0142220:CDS
CTCCTTCTCTCCGATAGATA+GGG 0.574815 1_4:+1050222 None:intergenic
CGAAAAGATGGGGTATGAGA+AGG 0.577206 1_4:-1045686 Msa0142220:CDS
CGAAAAGATGGGGTATGAGA+AGG 0.577206 1_4:-1049882 Msa0142220:CDS
ACTTCCGGGCTTCTTGAAGT+CGG 0.578288 1_4:+1052002 None:intergenic
GAAGAGTAATCCATCAGAGT+TGG 0.583113 1_4:+1045711 None:intergenic
GAAGAGTAATCCATCAGAGT+TGG 0.583113 1_4:+1049907 None:intergenic
TACTCTTCTTCGAAAAGATG+GGG 0.590062 1_4:-1045696 Msa0142220:CDS
TACTCTTCTTCGAAAAGATG+GGG 0.590062 1_4:-1049892 Msa0142220:CDS
CATCATGACGAAGAAGTTCG+AGG 0.591689 1_4:-1045617 Msa0142220:CDS
CATCATGACGAAGAAGTTCG+AGG 0.591689 1_4:-1049813 Msa0142220:CDS
CGTAACCGAGGATAGCGTCT+TGG 0.592411 1_4:+1046117 None:intergenic
GAAGCAAAAGGTAGATGATG+AGG 0.593633 1_4:-1047494 Msa0142220:CDS
ATGTCCGACTTCAAGAAGCC+CGG 0.593848 1_4:-1052006 Msa0142220:CDS
TCTTCGTTAACCCTATCTAT+CGG 0.594965 1_4:-1050232 Msa0142220:CDS
CGAATCTTCTGGTGAAGATG+AGG 0.595263 1_4:-1043836 Msa0142220:intron
GTTGTTGAACCGAAGAGTAA+TGG 0.596929 1_4:-1050275 Msa0142220:CDS
ATAGATAGGGTTAACGAAGA+GGG 0.600356 1_4:+1050235 None:intergenic
GATCGCCTAGACGCTATCCT+CGG 0.600406 1_4:-1050314 Msa0142220:CDS
AAAGAAGCAAAAGGTAGATG+AGG 0.604240 1_4:-1044345 Msa0142220:CDS
AGTAACAACTCAGCTGAAAG+TGG 0.605182 1_4:-1051835 Msa0142220:CDS
CACATCCTCAGATTCATGAA+AGG 0.607833 1_4:+1047420 None:intergenic
ATGCATTATGCGGAGACCCA+AGG 0.609027 1_4:-1045586 Msa0142220:intron
ATGCATTATGCGGAGACCGA+AGG 0.609027 1_4:-1049782 Msa0142220:intron
GAACCGAAGAGTAATGGTTG+TGG 0.611924 1_4:-1046077 Msa0142220:CDS
TTATGCAAGAAATGTGTCCC+CGG 0.612072 1_4:-1050456 Msa0142220:CDS
GGATTATCTCTTACCTGACG+TGG 0.613896 1_4:-1046192 Msa0142220:CDS
GGATTATCTCTTACCTGACG+TGG 0.613896 1_4:-1050384 Msa0142220:CDS
TCCATATCTACTCATCCTCA+AGG 0.618865 1_4:-1051975 Msa0142220:CDS
TTGACTTTGATATAGGCAAG+AGG 0.619505 1_4:-1044400 Msa0142220:intron
TTGACTTTGATATAGGCAAG+AGG 0.619505 1_4:-1047552 Msa0142220:intron
GGAATCTTCTGATGAAGATG+AGG 0.626607 1_4:-1050891 Msa0142220:intron
GTCGTTGAACCGAAGAGTAA+TGG 0.627136 1_4:-1046083 Msa0142220:CDS
GATGGGGTATGAGAAGGAGG+CGG 0.628374 1_4:-1049876 Msa0142220:CDS
GGAATCCTTTCATGAATCTG+AGG 0.630260 1_4:-1047425 Msa0142220:CDS
AAAGATGGGGTATGAGAAGG+AGG 0.631960 1_4:-1045683 Msa0142220:CDS
AAAGATGGGGTATGAGAAGG+AGG 0.631960 1_4:-1049879 Msa0142220:CDS
AGTAGTCAAAATTAGTTCGG+AGG 0.632406 1_4:-1047446 Msa0142220:CDS
CGTAACCGAGGATAGCGTCT+AGG 0.634116 1_4:+1050309 None:intergenic
GATAGATAGGGTTAACGAAG+AGG 0.635784 1_4:+1050234 None:intergenic
AAAACTGCTACCCTAGTCGT+CGG 0.640819 1_4:+1042654 None:intergenic
TATAGGCAAGAGGCAAGCTG+TGG 0.650683 1_4:-1044390 Msa0142220:intron
TGAATCTTCTGATGAAGATG+AGG 0.655782 1_4:-1044056 Msa0142220:intron
GGGGAAGCAGATGCATTATG+CGG 0.657065 1_4:-1045596 Msa0142220:CDS
GGGGAAGCAGATGCATTATG+CGG 0.657065 1_4:-1049792 Msa0142220:CDS
GAACCGAAGAGTAATGGTTG+TGG 0.671387 1_4:-1050269 Msa0142220:CDS
GAGTGCACCTGAAAAGAAAG+CGG 0.672655 1_4:-1050939 Msa0142220:CDS
AACAACTCAGCTGAAAGTGG+CGG 0.672747 1_4:-1051832 Msa0142220:CDS
ACAGGCACTTGATAAGAATG+GGG 0.678990 1_4:-1052047 Msa0142220:intron
TATAGGCAAGAGGCAAGCTG+AGG 0.681134 1_4:-1047542 Msa0142220:intron
TATAGGCAAGAGGCAAGCTG+AGG 0.681134 1_4:-1052681 None:intergenic
TATAAACCAGGCCTATACCA+AGG 0.685036 1_4:-1042910 Msa0142220:intron
CATCAAAGATGACGTAACCG+AGG 0.686654 1_4:+1050297 None:intergenic
GTTTCTTAAGACCACATCCG+GGG 0.688273 1_4:+1050439 None:intergenic
AAAGAAGCAAAAGGTAGACG+AGG 0.690556 1_4:-1052636 Msa0142220:CDS
TCATGACGAAGAAGTTCGAG+GGG 0.691102 1_4:-1045615 Msa0142220:CDS
TCATGACGAAGAAGTTCGAG+GGG 0.691102 1_4:-1049811 Msa0142220:CDS
CATCAAAGATGACGTAACCG+AGG 0.714623 1_4:+1046105 None:intergenic
TAAGATTCTTCAAGTCATCG+CGG 0.762237 1_4:-1046147 Msa0142220:CDS
TAAGATTCTTCAAGTCATCG+CGG 0.762237 1_4:-1050339 Msa0142220:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAATGATATAAAAAA+GGG + chr1_4:1044515-1044534 None:intergenic 10.0%
!! CAAAAATGTTTAATTAAAAA+GGG + chr1_4:1044555-1044574 None:intergenic 10.0%
!! ACAAAAATGTTTAATTAAAA+AGG + chr1_4:1044556-1044575 None:intergenic 10.0%
!!! TAGTTTTTTCTTTTTTTTTT+TGG - chr1_4:1046735-1046754 Msa0142220:intron 10.0%
!! ATACAATGATATAAAATTAA+GGG + chr1_4:1048582-1048601 None:intergenic 10.0%
!! AATACAATGATATAAAATTA+AGG + chr1_4:1048583-1048602 None:intergenic 10.0%
!! AGAAAAATGTTTAATTAAAA+CGG + chr1_4:1048626-1048645 None:intergenic 10.0%
!! TTACAATGATATAAAATAAA+GGG + chr1_4:1048804-1048823 None:intergenic 10.0%
!! ATTACAATGATATAAAATAA+AGG + chr1_4:1048805-1048824 None:intergenic 10.0%
!! ATACATTGATATAAAATTAA+GGG + chr1_4:1051120-1051139 None:intergenic 10.0%
!! AATACATTGATATAAAATTA+AGG + chr1_4:1051121-1051140 None:intergenic 10.0%
!! ACAAAAATGTTTAATTAAAA+CGG + chr1_4:1044556-1044575 None:intergenic 10.0%
!! AAATCAATGATATAAAATTA+AGG + chr1_4:1051354-1051373 None:intergenic 10.0%
!! CAAAAAAGTTTAATTAAAAA+GGG + chr1_4:1051394-1051413 None:intergenic 10.0%
!! ACAAAAAAGTTTAATTAAAA+AGG + chr1_4:1051395-1051414 None:intergenic 10.0%
!! AATATATAAAAGAATAACTG+GGG + chr1_4:1043635-1043654 None:intergenic 15.0%
!! CAATATATAAAAGAATAACT+GGG + chr1_4:1043636-1043655 None:intergenic 15.0%
!! ACAATATATAAAAGAATAAC+TGG + chr1_4:1043637-1043656 None:intergenic 15.0%
!! ATACAATGATACAAAATTAA+GGG + chr1_4:1044294-1044313 None:intergenic 15.0%
!! AATACAATGATACAAAATTA+AGG + chr1_4:1044295-1044314 None:intergenic 15.0%
!!! TTTTGTATCATTGTATTTAA+TGG - chr1_4:1044298-1044317 Msa0142220:intron 15.0%
!! AGAAAAATGGTTAATTAAAA+CGG + chr1_4:1044337-1044356 None:intergenic 15.0%
!! CAATTACAATGATATAAAAA+AGG + chr1_4:1044516-1044535 None:intergenic 15.0%
!!! AATTAAACATTTTTGTTTCA+TGG - chr1_4:1044560-1044579 Msa0142220:intron 15.0%
!!! ACTACATATTATTGTTATTA+TGG + chr1_4:1044757-1044776 None:intergenic 15.0%
!! TAGTTAAAATCATATATGTT+AGG - chr1_4:1045282-1045301 Msa0142220:intron 15.0%
!! AAAATAAACAGCTAAAAAAA+GGG + chr1_4:1045624-1045643 None:intergenic 15.0%
!! TTATGAAAAAACAACTTTAT+TGG - chr1_4:1045655-1045674 Msa0142220:CDS 15.0%
!!! ATATAATTTCTTTTGATTCT+TGG - chr1_4:1046596-1046615 Msa0142220:intron 15.0%
!!! TATAATTTCTTTTGATTCTT+GGG - chr1_4:1046597-1046616 Msa0142220:intron 15.0%
!!! TTTAATTTACTTTTGAAACT+TGG - chr1_4:1046689-1046708 Msa0142220:intron 15.0%
!!! AGAATTTTCAACAATAAAAT+TGG + chr1_4:1047156-1047175 None:intergenic 15.0%
!!! TGATGTTGATTTTTTTTATT+GGG - chr1_4:1047763-1047782 Msa0142220:intron 15.0%
!!! TTTTATATCATTGTATTTAC+TGG - chr1_4:1048586-1048605 Msa0142220:intron 15.0%
!! GAAAAATGTTTAATTAAAAC+GGG + chr1_4:1048625-1048644 None:intergenic 15.0%
!!! ACTACATATTATTGTTATTA+TGG + chr1_4:1044757-1044776 None:intergenic 15.0%
!! TAGTTAAAATCATATATGTT+AGG - chr1_4:1045282-1045301 Msa0142220:intron 15.0%
!! AAAATAAACAGCTAAAAAAA+GGG + chr1_4:1045624-1045643 None:intergenic 15.0%
!!! TTTTATATCAATGTATTTAC+TGG - chr1_4:1051124-1051143 Msa0142220:intron 15.0%
!!! AATTAAACATTTTTGTATCA+TGG - chr1_4:1051167-1051186 Msa0142220:intron 15.0%
!!! ATTTTATATCATTGATTTAC+CGG - chr1_4:1051356-1051375 Msa0142220:intron 15.0%
!!! AATTAAACTTTTTTGTTTCA+TGG - chr1_4:1051399-1051418 Msa0142220:intron 15.0%
!! TTGAAAAAAGTAACAAATAA+TGG + chr1_4:1052327-1052346 None:intergenic 15.0%
!!! TATTTGTTACTTTTTTCAAT+AGG - chr1_4:1052328-1052347 Msa0142220:intron 15.0%
!! ATTCTGTTATGAATTTAATG+TGG - chr1_4:1042822-1042841 Msa0142220:intron 20.0%
!! TTACAATAACAAACAAATAC+AGG + chr1_4:1042853-1042872 None:intergenic 20.0%
!! ATCTTGGAAAAAATTTATTC+TGG + chr1_4:1043052-1043071 None:intergenic 20.0%
!!! ATAAATTTTTTCCAAGATTG+TGG - chr1_4:1043054-1043073 Msa0142220:intron 20.0%
!!! TGTTTGCATTTTTTAATAAC+AGG - chr1_4:1043278-1043297 Msa0142220:intron 20.0%
!! TATTAAAAGGCTTAAATGTA+AGG + chr1_4:1043481-1043500 None:intergenic 20.0%
!!! ATTTTAGAACAATGTTTCTA+AGG + chr1_4:1043671-1043690 None:intergenic 20.0%
!! TAATTAACTTAACTCATTAG+AGG - chr1_4:1043764-1043783 Msa0142220:intron 20.0%
!! AATTAACTTAACTCATTAGA+GGG - chr1_4:1043765-1043784 Msa0142220:intron 20.0%
!! GAAAAATGGTTAATTAAAAC+GGG + chr1_4:1044336-1044355 None:intergenic 20.0%
!!! TTTTATATCATTGTAATTGC+TGG - chr1_4:1044517-1044536 Msa0142220:intron 20.0%
!! TATGGTTATTGTGATATATA+TGG + chr1_4:1044739-1044758 None:intergenic 20.0%
!!! TATAATGTTTTGGTTTTTTG+TGG - chr1_4:1044802-1044821 Msa0142220:intron 20.0%
!!! ATAATGTTTTGGTTTTTTGT+GGG - chr1_4:1044803-1044822 Msa0142220:intron 20.0%
!! AAAATTATGACAGAATCAAT+CGG + chr1_4:1045210-1045229 None:intergenic 20.0%
!! TTAAAATCATATATGTTAGG+AGG - chr1_4:1045285-1045304 Msa0142220:intron 20.0%
!!! TGTGTCTTCTTTTAATTTAA+TGG - chr1_4:1045329-1045348 Msa0142220:intron 20.0%
!!! TTTTAATTTAATGGTGTGAT+TGG - chr1_4:1045338-1045357 Msa0142220:intron 20.0%
!! AAATAAACAGCTAAAAAAAG+GGG + chr1_4:1045623-1045642 None:intergenic 20.0%
!! GAAAATAAACAGCTAAAAAA+AGG + chr1_4:1045625-1045644 None:intergenic 20.0%
!!! GTATGAGATTTTAGTTTTAA+AGG - chr1_4:1045979-1045998 Msa0142220:intron 20.0%
!!! CTGATGTTGATTTTTTTTAT+TGG - chr1_4:1047762-1047781 Msa0142220:intron 20.0%
!! ATGTTGTTATGAATTTAATG+TGG - chr1_4:1047969-1047988 Msa0142220:intron 20.0%
!! TTACAATAACAAACAAATAC+AGG + chr1_4:1042853-1042872 None:intergenic 20.0%
!!! TTTTTGACTACATAAACAAA+TGG + chr1_4:1048182-1048201 None:intergenic 20.0%
!! AAAATCAAATTCTAATCAGA+AGG + chr1_4:1048279-1048298 None:intergenic 20.0%
!!! AATTAAACATTTTTCTGTCA+TGG - chr1_4:1048630-1048649 Msa0142220:intron 20.0%
!!! TAATGTTTTTGGTTTTTTTG+TGG - chr1_4:1048995-1049014 Msa0142220:intron 20.0%
!! AAAATTATGACAGAATCAAT+CGG + chr1_4:1045210-1045229 None:intergenic 20.0%
!! TTAAAATCATATATGTTAGG+AGG - chr1_4:1045285-1045304 Msa0142220:intron 20.0%
!!! TGTGTCTTCTTTTTATTTAA+TGG - chr1_4:1049525-1049544 Msa0142220:intron 20.0%
!!! TTTTTATTTAATGGTGTGAT+TGG - chr1_4:1049534-1049553 Msa0142220:intron 20.0%
!! AAATAAACAGCTAAAAAAAG+GGG + chr1_4:1045623-1045642 None:intergenic 20.0%
!! GAAAATAAACAGCTAAAAAA+AGG + chr1_4:1045625-1045644 None:intergenic 20.0%
!!! GTATGAGATTTTAGTTTTAA+AGG - chr1_4:1045979-1045998 Msa0142220:intron 20.0%
!!! AGAGTTTTCAACAATAAAAT+TGG + chr1_4:1050860-1050879 None:intergenic 20.0%
!!! TATTTACTGGTTTTTTAAGA+TGG - chr1_4:1051137-1051156 Msa0142220:intron 20.0%
!!! TTTTGAAGTTTATTGCATAT+TGG - chr1_4:1051319-1051338 Msa0142220:intron 20.0%
!!! AAAAGGGAATTTTAAAAAAC+CGG + chr1_4:1051378-1051397 None:intergenic 20.0%
!!! ACTATTACCCTTTTAATATT+AGG - chr1_4:1052150-1052169 Msa0142220:intron 20.0%
!! TTAAGTGCCTAATATTAAAA+GGG + chr1_4:1052160-1052179 None:intergenic 20.0%
!! AGTAATTACCTGTTATTATT+AGG + chr1_4:1052253-1052272 None:intergenic 20.0%
!! GTAGTTAAAAGAAAATTTCT+TGG + chr1_4:1052280-1052299 None:intergenic 20.0%
!! GTATTAAAAACTTTACTTCA+TGG - chr1_4:1052387-1052406 Msa0142220:intron 20.0%
!! AAATATTGTTGAAAAACCAT+TGG + chr1_4:1052494-1052513 None:intergenic 20.0%
!!! AATTTAACTTGTCATTTTTC+AGG - chr1_4:1052649-1052668 Msa0142220:CDS 20.0%
!!! ATTTAACTTGTCATTTTTCA+GGG - chr1_4:1052650-1052669 Msa0142220:CDS 20.0%
! ATCATATAATCATGTGAAAC+AGG + chr1_4:1043258-1043277 None:intergenic 25.0%
! AATTACCTGTCAATAAAAAG+AGG + chr1_4:1043398-1043417 None:intergenic 25.0%
! TAATGGAATCAATACAAATG+AGG + chr1_4:1043456-1043475 None:intergenic 25.0%
! GTTACTGCAACAATATTAAA+AGG + chr1_4:1043494-1043513 None:intergenic 25.0%
!!! CATTGTTCTAAAATTCAGTT+TGG - chr1_4:1043677-1043696 Msa0142220:intron 25.0%
!! TAGTTTGTCATCATCAAAAA+GGG + chr1_4:1043716-1043735 None:intergenic 25.0%
!!! TTAGTTTGTCATCATCAAAA+AGG + chr1_4:1043717-1043736 None:intergenic 25.0%
! GAATCAAAATTCTAATCAGA+AGG + chr1_4:1043984-1044003 None:intergenic 25.0%
! TATCAAATTCAGGAAGATAT+AGG + chr1_4:1044185-1044204 None:intergenic 25.0%
! TTAGGTAGAAATTTGACATT+TGG - chr1_4:1044218-1044237 Msa0142220:intron 25.0%
!!! AATTAACCATTTTTCTGTCA+TGG - chr1_4:1044341-1044360 Msa0142220:CDS 25.0%
!!! AAGCTGTTTCTTCTAAAATA+GGG - chr1_4:1044382-1044401 Msa0142220:CDS 25.0%
! ATGAAAGGTTACAACTATTT+CGG + chr1_4:1044637-1044656 None:intergenic 25.0%
!! ACCTTTCTACTATAATGTTT+TGG - chr1_4:1044792-1044811 Msa0142220:intron 25.0%
! ACCAAAACATTATAGTAGAA+AGG + chr1_4:1044796-1044815 None:intergenic 25.0%
!! TTTCTTGCATAACGAATTTT+GGG + chr1_4:1044879-1044898 None:intergenic 25.0%
!! ATTTCTTGCATAACGAATTT+TGG + chr1_4:1044880-1044899 None:intergenic 25.0%
!! TGATTCTGTCATAATTTTGT+TGG - chr1_4:1045212-1045231 Msa0142220:intron 25.0%
! TAACTAACAATAGCAATAAC+AGG + chr1_4:1045264-1045283 None:intergenic 25.0%
! TGAAGAGCAATTATATTGAT+GGG - chr1_4:1045490-1045509 Msa0142220:intron 25.0%
! AATAAACAGCTAAAAAAAGG+GGG + chr1_4:1045622-1045641 None:intergenic 25.0%
!! TGAAAAGTTTTCTATAGTTG+AGG - chr1_4:1045700-1045719 Msa0142220:CDS 25.0%
! ACCTTGATCATTAAGAAATT+TGG - chr1_4:1045878-1045897 Msa0142220:intron 25.0%
! ACCAAATTTCTTAATGATCA+AGG + chr1_4:1045882-1045901 None:intergenic 25.0%
! ATCATTAAGAAATTTGGTAG+AGG - chr1_4:1045884-1045903 Msa0142220:intron 25.0%
! TCATTAAGAAATTTGGTAGA+GGG - chr1_4:1045885-1045904 Msa0142220:intron 25.0%
! ATTAAAGTTGTTCAATCTGA+TGG + chr1_4:1045926-1045945 None:intergenic 25.0%
!!! ACTTGTTTTCTGTGATTTTT+CGG + chr1_4:1046089-1046108 None:intergenic 25.0%
!! AAATCAGACAAGCTTTTATT+TGG - chr1_4:1046187-1046206 Msa0142220:CDS 25.0%
! AGGAACATTATTACATTGAT+AGG - chr1_4:1046334-1046353 Msa0142220:intron 25.0%
!! ACTAGAAATGTTTTCTTAAG+AGG - chr1_4:1046370-1046389 Msa0142220:intron 25.0%
!! TTTGAATCGATCAAATTTTC+CGG + chr1_4:1047082-1047101 None:intergenic 25.0%
!! AAAAGATTCATAACGGTTTT+CGG + chr1_4:1047227-1047246 None:intergenic 25.0%
!!! TTAGTGTGTAGTTTTACAAT+TGG - chr1_4:1047651-1047670 Msa0142220:intron 25.0%
!!! TAGTGTGTAGTTTTACAATT+GGG - chr1_4:1047652-1047671 Msa0142220:intron 25.0%
! TATGTTATAGAGTTGTTGAT+TGG - chr1_4:1047688-1047707 Msa0142220:intron 25.0%
!!! GGTTATTTTGACTTTGATAT+AGG - chr1_4:1047784-1047803 Msa0142220:intron 25.0%
! GAAAGTAGTCAAAATTAGTT+CGG - chr1_4:1047894-1047913 Msa0142220:intron 25.0%
! ATTGTATTCCAAACTCAAAT+CGG - chr1_4:1048066-1048085 Msa0142220:intron 25.0%
!!! AAATTCCCCATTTTAATTTG+AGG - chr1_4:1048091-1048110 Msa0142220:intron 25.0%
!!! AATTCCCCATTTTAATTTGA+GGG - chr1_4:1048092-1048111 Msa0142220:intron 25.0%
!!! AATGGAGAGAGTATTTATAA+GGG + chr1_4:1048164-1048183 None:intergenic 25.0%
!!! AAATGGAGAGAGTATTTATA+AGG + chr1_4:1048165-1048184 None:intergenic 25.0%
!!! TTGATTTTGAAGTTCTACTT+AGG - chr1_4:1048291-1048310 Msa0142220:intron 25.0%
!!! TGATTTTGAAGTTCTACTTA+GGG - chr1_4:1048292-1048311 Msa0142220:intron 25.0%
!!! AAGCTGTTTCTTCTAAAATA+GGG - chr1_4:1044382-1044401 Msa0142220:CDS 25.0%
! CCAAAAACATTATAGTAGAA+AGG + chr1_4:1048987-1049006 None:intergenic 25.0%
!! CCTTTCTACTATAATGTTTT+TGG - chr1_4:1044793-1044812 Msa0142220:intron 25.0%
!! TTTCTTGCATAACGAATTTT+GGG + chr1_4:1044879-1044898 None:intergenic 25.0%
!! ATTTCTTGCATAACGAATTT+TGG + chr1_4:1044880-1044899 None:intergenic 25.0%
!! TGATTCTGTCATAATTTTGT+TGG - chr1_4:1045212-1045231 Msa0142220:intron 25.0%
! TAACTAACAATAGCAATAAC+AGG + chr1_4:1045264-1045283 None:intergenic 25.0%
! TGAAGAGCAATTATATTGAT+GGG - chr1_4:1045490-1045509 Msa0142220:intron 25.0%
! AATAAACAGCTAAAAAAAGG+GGG + chr1_4:1045622-1045641 None:intergenic 25.0%
! GTAAACAATTCCAACTTTAT+TGG - chr1_4:1049855-1049874 Msa0142220:CDS 25.0%
!! AGAAAAGTTTTCTATAGTTG+AGG - chr1_4:1049900-1049919 Msa0142220:CDS 25.0%
! AGTCATTCTATTTATCAGAT+AGG - chr1_4:1049924-1049943 Msa0142220:CDS 25.0%
! ACCTTGATCATTATGAAATT+TGG - chr1_4:1050078-1050097 Msa0142220:intron 25.0%
! ACCAAATTTCATAATGATCA+AGG + chr1_4:1050082-1050101 None:intergenic 25.0%
! ATCATTATGAAATTTGGTAG+AGG - chr1_4:1050084-1050103 Msa0142220:intron 25.0%
! TCATTATGAAATTTGGTAGA+GGG - chr1_4:1050085-1050104 Msa0142220:intron 25.0%
!!! ACTTGTTTTCTGTGATTTTT+CGG + chr1_4:1046089-1046108 None:intergenic 25.0%
!!! TACTTAGTTTCAAAGCATTT+TGG - chr1_4:1050416-1050435 Msa0142220:CDS 25.0%
! AGCAACATTATTACATTGAT+AGG - chr1_4:1050529-1050548 Msa0142220:intron 25.0%
! TTTGAATTGATCAAATTCTC+CGG + chr1_4:1050786-1050805 None:intergenic 25.0%
!!! AGGATATAAAGATTTTTTCG+TGG + chr1_4:1050817-1050836 None:intergenic 25.0%
! AGAACATCAGAAAAAATTTC+CGG + chr1_4:1050907-1050926 None:intergenic 25.0%
!! TTTCTGATGTTCTTGTTTAT+TGG - chr1_4:1050914-1050933 Msa0142220:CDS 25.0%
!! TTCTGATGTTCTTGTTTATT+GGG - chr1_4:1050915-1050934 Msa0142220:CDS 25.0%
!!! GGTTATTTTGACTTTGATAT+AGG - chr1_4:1047784-1047803 Msa0142220:intron 25.0%
! AGAGTTAAAAGGTTACAATA+TGG + chr1_4:1051555-1051574 None:intergenic 25.0%
!!! TATTGTAACCTTTTAACTCT+TGG - chr1_4:1051555-1051574 Msa0142220:intron 25.0%
!! TAAAAGGGTAATAGTCATTT+TGG + chr1_4:1052145-1052164 None:intergenic 25.0%
! CTTAAGTGCCTAATATTAAA+AGG + chr1_4:1052161-1052180 None:intergenic 25.0%
! CATATACTCCTAATAATAAC+AGG - chr1_4:1052242-1052261 Msa0142220:intron 25.0%
! ATACAACATTAGAAGAAACA+GGG + chr1_4:1052371-1052390 None:intergenic 25.0%
! AATACAACATTAGAAGAAAC+AGG + chr1_4:1052372-1052391 None:intergenic 25.0%
! TACCTTCAATACCTTTTGTT+TGG + chr1_4:1042739-1042758 None:intergenic 30.0%
ACTTTCGAAGACAATATATG+TGG - chr1_4:1042920-1042939 Msa0142220:CDS 30.0%
CTTTCGAAGACAATATATGT+GGG - chr1_4:1042921-1042940 Msa0142220:CDS 30.0%
TTTCGAAGACAATATATGTG+GGG - chr1_4:1042922-1042941 Msa0142220:CDS 30.0%
!!! TTTTTTCCAAGATTGTGGAA+TGG - chr1_4:1043059-1043078 Msa0142220:intron 30.0%
! ACTCTTATTGATTGTTTCCA+TGG - chr1_4:1043214-1043233 Msa0142220:intron 30.0%
ATAAAAAGAGGATATCCTTG+AGG + chr1_4:1043386-1043405 None:intergenic 30.0%
! GATATCCTCTTTTTATTGAC+AGG - chr1_4:1043390-1043409 Msa0142220:CDS 30.0%
GGCTTAAATGTAAGGAATAA+TGG + chr1_4:1043473-1043492 None:intergenic 30.0%
ACTTAACAGCCTTAGATTTA+GGG + chr1_4:1043808-1043827 None:intergenic 30.0%
TACTTAACAGCCTTAGATTT+AGG + chr1_4:1043809-1043828 None:intergenic 30.0%
!! TTGATTCTGAAGTTCTTCTT+AGG - chr1_4:1043997-1044016 Msa0142220:intron 30.0%
!! TGATTCTGAAGTTCTTCTTA+GGG - chr1_4:1043998-1044017 Msa0142220:intron 30.0%
GGCAAAGAGAATTTAAGAAT+TGG - chr1_4:1044086-1044105 Msa0142220:CDS 30.0%
TATCTTCCTGAATTTGATAG+AGG - chr1_4:1044186-1044205 Msa0142220:intron 30.0%
TCAAATTTCTACCTAATCAG+GGG + chr1_4:1044214-1044233 None:intergenic 30.0%
GTCAAATTTCTACCTAATCA+GGG + chr1_4:1044215-1044234 None:intergenic 30.0%
TGTCAAATTTCTACCTAATC+AGG + chr1_4:1044216-1044235 None:intergenic 30.0%
TTTGACATTTGGAAATCCAT+AGG - chr1_4:1044229-1044248 Msa0142220:intron 30.0%
TCTAAACCATGACAGAAAAA+TGG + chr1_4:1044350-1044369 None:intergenic 30.0%
!! GAAGCTGTTTCTTCTAAAAT+AGG - chr1_4:1044381-1044400 Msa0142220:CDS 30.0%
!! TCATTTTGTTTCATCTAGTG+AGG - chr1_4:1044431-1044450 Msa0142220:intron 30.0%
!! AAAGTCGTTCCTTCTAAAAT+AGG - chr1_4:1044600-1044619 Msa0142220:intron 30.0%
!! AAGTCGTTCCTTCTAAAATA+GGG - chr1_4:1044601-1044620 Msa0142220:intron 30.0%
!! GAAGGTTACAACTATTTCTA+TGG + chr1_4:1044665-1044684 None:intergenic 30.0%
GTAACCTTCTAACTATTAGT+TGG - chr1_4:1044676-1044695 Msa0142220:intron 30.0%
AACACCAACTAATAGTTAGA+AGG + chr1_4:1044683-1044702 None:intergenic 30.0%
TCAAATCATACAACCATTAG+AGG + chr1_4:1044714-1044733 None:intergenic 30.0%
!! CTGTCATAATTTTGTTGGTT+TGG - chr1_4:1045217-1045236 Msa0142220:intron 30.0%
ATTACTCTTCTTCGAAAAGA+TGG - chr1_4:1045449-1045468 Msa0142220:intron 30.0%
TTACTCTTCTTCGAAAAGAT+GGG - chr1_4:1045450-1045469 Msa0142220:intron 30.0%
GTGAAGAGCAATTATATTGA+TGG - chr1_4:1045489-1045508 Msa0142220:intron 30.0%
! GCTAAAATGCTTGTGTTTTT+GGG + chr1_4:1045771-1045790 None:intergenic 30.0%
! TGCTAAAATGCTTGTGTTTT+TGG + chr1_4:1045772-1045791 None:intergenic 30.0%
CCTCATACACATCATAAAAA+TGG + chr1_4:1045852-1045871 None:intergenic 30.0%
!! CCATTTTTATGATGTGTATG+AGG - chr1_4:1045849-1045868 Msa0142220:intron 30.0%
AATCCAAGTAAAACGTGAAA+AGG - chr1_4:1046005-1046024 Msa0142220:CDS 30.0%
! TTGTTTTCTGTGATTTTTCG+GGG + chr1_4:1046087-1046106 None:intergenic 30.0%
!! CTTGTTTTCTGTGATTTTTC+GGG + chr1_4:1046088-1046107 None:intergenic 30.0%
AATCACAGAAAACAAGTTCA+AGG - chr1_4:1046092-1046111 Msa0142220:CDS 30.0%
ATCACAGAAAACAAGTTCAA+GGG - chr1_4:1046093-1046112 Msa0142220:CDS 30.0%
!!! TTTTTGAGTACGTCATAATG+AGG - chr1_4:1046238-1046257 Msa0142220:intron 30.0%
TAATGTAAAGCTCTTTCAAG+AGG + chr1_4:1046506-1046525 None:intergenic 30.0%
!! TGAATGGCATTGGAATTTTA+AGG + chr1_4:1047046-1047065 None:intergenic 30.0%
CAACAATAAAATTGGAGAAG+TGG + chr1_4:1047148-1047167 None:intergenic 30.0%
GGCAACAAAAAGATTCATAA+CGG + chr1_4:1047234-1047253 None:intergenic 30.0%
!! TCTTAACGAAAGATTAGTCT+TGG - chr1_4:1047443-1047462 Msa0142220:CDS 30.0%
CTTGAAAACTCCTTCATAAT+CGG + chr1_4:1047476-1047495 None:intergenic 30.0%
! AACACGTAATACAAGTATTG+CGG + chr1_4:1047551-1047570 None:intergenic 30.0%
! TTTTATGTGTGTATCTCGAT+GGG + chr1_4:1047630-1047649 None:intergenic 30.0%
! ATTTTATGTGTGTATCTCGA+TGG + chr1_4:1047631-1047650 None:intergenic 30.0%
! GATTGGTCGAACTAATTATA+TGG - chr1_4:1047705-1047724 Msa0142220:intron 30.0%
!!! ATTCCCCATTTTAATTTGAG+GGG - chr1_4:1048093-1048112 Msa0142220:intron 30.0%
AGTTCCCCTCAAATTAAAAT+GGG + chr1_4:1048100-1048119 None:intergenic 30.0%
TAGTTCCCCTCAAATTAAAA+TGG + chr1_4:1048101-1048120 None:intergenic 30.0%
! GAGTATTTATAAGGGTTAGT+TGG + chr1_4:1048156-1048175 None:intergenic 30.0%
!!! GATTTTGAAGTTCTACTTAG+GGG - chr1_4:1048293-1048312 Msa0142220:intron 30.0%
TATCAGATTCAGGAAGATAT+AGG + chr1_4:1048475-1048494 None:intergenic 30.0%
TATATCTTCCTGAATCTGAT+AGG - chr1_4:1048474-1048493 Msa0142220:intron 30.0%
TTAGGTAGAAGTTTGACATT+TGG - chr1_4:1048508-1048527 Msa0142220:intron 30.0%
!! GAAGCTGTTTCTTCTAAAAT+AGG - chr1_4:1044381-1044400 Msa0142220:CDS 30.0%
!! CTGTCATAATTTTGTTGGTT+TGG - chr1_4:1045217-1045236 Msa0142220:intron 30.0%
ATTACTCTTCTTCGAAAAGA+TGG - chr1_4:1045449-1045468 Msa0142220:intron 30.0%
TTACTCTTCTTCGAAAAGAT+GGG - chr1_4:1045450-1045469 Msa0142220:intron 30.0%
GTGAAGAGCAATTATATTGA+TGG - chr1_4:1045489-1045508 Msa0142220:intron 30.0%
ATCAAACTAGCCAATAAAGT+TGG + chr1_4:1045668-1045687 None:intergenic 30.0%
! GCTAAAATGCTTGTCTTTTT+GGG + chr1_4:1049971-1049990 None:intergenic 30.0%
! TGCTAAAATGCTTGTCTTTT+TGG + chr1_4:1049972-1049991 None:intergenic 30.0%
AATCCAAGTAAAACGTGAAA+AGG - chr1_4:1046005-1046024 Msa0142220:CDS 30.0%
TAACCACATGACAATTCAAT+AGG - chr1_4:1050250-1050269 Msa0142220:CDS 30.0%
! TTGTTTTCTGTGATTTTTCG+GGG + chr1_4:1046087-1046106 None:intergenic 30.0%
!! CTTGTTTTCTGTGATTTTTC+GGG + chr1_4:1046088-1046107 None:intergenic 30.0%
AAATCAGACAAGCGTTTATT+TGG - chr1_4:1050382-1050401 Msa0142220:CDS 30.0%
CGAAACTGTAAACTAGAAAA+CGG - chr1_4:1050554-1050573 Msa0142220:intron 30.0%
GAAACTGTAAACTAGAAAAC+GGG - chr1_4:1050555-1050574 Msa0142220:intron 30.0%
!!! TAAAGATTTTTTCGTGGAGA+TGG + chr1_4:1050811-1050830 None:intergenic 30.0%
CAACAATAAAATTGGAGAAG+TGG + chr1_4:1047148-1047167 None:intergenic 30.0%
AGTTTCTTCAAAGAAGCAAA+AGG - chr1_4:1050989-1051008 Msa0142220:intron 30.0%
! TACCTTCAATACCTTTTGTT+TGG + chr1_4:1042739-1042758 None:intergenic 30.0%
AAAGTTGTTCCATCCAAAAA+TGG - chr1_4:1051207-1051226 Msa0142220:intron 30.0%
AAGTTGTTCCATCCAAAAAT+GGG - chr1_4:1051208-1051227 Msa0142220:intron 30.0%
TAAAGATCGTCTTTCTTTAC+AGG + chr1_4:1051240-1051259 None:intergenic 30.0%
GTGTGAAGACATTATATGTT+GGG - chr1_4:1051818-1051837 Msa0142220:CDS 30.0%
TTTACTCATCATGTGATTCT+TGG - chr1_4:1051881-1051900 Msa0142220:intron 30.0%
GAAAAATTCTTCCAAGATTG+TGG - chr1_4:1051950-1051969 Msa0142220:intron 30.0%
! CAATAACTTTTCCACAATCT+TGG + chr1_4:1051964-1051983 None:intergenic 30.0%
! TTGACATCTTTTCAACTTTG+TGG - chr1_4:1052075-1052094 Msa0142220:intron 30.0%
TATTAGGCACTTAAGATGAA+TGG - chr1_4:1052166-1052185 Msa0142220:intron 30.0%
ATTAGGCACTTAAGATGAAT+GGG - chr1_4:1052167-1052186 Msa0142220:intron 30.0%
CAAAAAGAGGAAATATACCT+TGG + chr1_4:1052453-1052472 None:intergenic 30.0%
AGTGACTTCAAAGAAGCAAA+AGG - chr1_4:1042698-1042717 Msa0142220:intron 35.0%
!! TGCCAAACAAAAGGTATTGA+AGG - chr1_4:1042734-1042753 Msa0142220:intron 35.0%
TTTCTCACTCATGTGATTCT+TGG - chr1_4:1042986-1043005 Msa0142220:intron 35.0%
ATGGTTGTTGATGTATGTCT+TGG - chr1_4:1043078-1043097 Msa0142220:intron 35.0%
GTTGATGTATGTCTTGGTTA+TGG - chr1_4:1043084-1043103 Msa0142220:intron 35.0%
! TCGACATCTTTTCAACTTTG+TGG - chr1_4:1043180-1043199 Msa0142220:intron 35.0%
TAACAGGCACTTGATAAGAA+TGG - chr1_4:1043294-1043313 Msa0142220:intron 35.0%
AACAGGCACTTGATAAGAAT+GGG - chr1_4:1043295-1043314 Msa0142220:intron 35.0%
TAAGAATGGGGAAAAACTGT+TGG - chr1_4:1043308-1043327 Msa0142220:intron 35.0%
!! TTTTGGTAAGAGTAATGGAG+AGG - chr1_4:1043552-1043571 Msa0142220:CDS 35.0%
TTAACAGCCTTAGATTTAGG+GGG + chr1_4:1043806-1043825 None:intergenic 35.0%
CTTAACAGCCTTAGATTTAG+GGG + chr1_4:1043807-1043826 None:intergenic 35.0%
GCAGTTAAATTCAGATTCTG+TGG - chr1_4:1043906-1043925 Msa0142220:CDS 35.0%
!! GATTCTGAAGTTCTTCTTAG+GGG - chr1_4:1043999-1044018 Msa0142220:intron 35.0%
! ATGAAGCATTCATGTGTTCT+TGG - chr1_4:1044065-1044084 Msa0142220:CDS 35.0%
CATTTCCTTTACAGTTAGTG+TGG + chr1_4:1044116-1044135 None:intergenic 35.0%
TTCAGGAAGATATAGGAGAT+TGG + chr1_4:1044178-1044197 None:intergenic 35.0%
!! AAATCCATAGGAGTATCAAC+TGG - chr1_4:1044241-1044260 Msa0142220:intron 35.0%
! TGAATATCCGCTTTCTTTTC+AGG + chr1_4:1044414-1044433 None:intergenic 35.0%
ATTTCTATGGCTGCTATGAA+AGG + chr1_4:1044652-1044671 None:intergenic 35.0%
! GTGTTTTGTGATACCTCTAA+TGG - chr1_4:1044698-1044717 Msa0142220:intron 35.0%
! CGACATATTTAAGATTCTCG+TGG - chr1_4:1044938-1044957 Msa0142220:intron 35.0%
GATCTTGAAAGTTTGGAGAA+TGG - chr1_4:1044981-1045000 Msa0142220:intron 35.0%
TAAGATTCTTCAAGTCATCG+CGG - chr1_4:1045004-1045023 Msa0142220:intron 35.0%
ATAGATAGGGTTAACGAAGA+GGG + chr1_4:1045111-1045130 None:intergenic 35.0%
TCTTCGTTAACCCTATCTAT+CGG - chr1_4:1045111-1045130 Msa0142220:intron 35.0%
TGAAAAGGACTTAAGGGATA+AGG - chr1_4:1045169-1045188 Msa0142220:intron 35.0%
GATTGGTGTAGTCTGTAATA+TGG - chr1_4:1045355-1045374 Msa0142220:intron 35.0%
TACTCTTCTTCGAAAAGATG+GGG - chr1_4:1045451-1045470 Msa0142220:intron 35.0%
GAGCAATTATATTGATGGGA+AGG - chr1_4:1045494-1045513 Msa0142220:intron 35.0%
AAAGTTGTTCAATCTGATGG+TGG + chr1_4:1045923-1045942 None:intergenic 35.0%
! ATGCCTTTTCACGTTTTACT+TGG + chr1_4:1046011-1046030 None:intergenic 35.0%
TCACAGAAAACAAGTTCAAG+GGG - chr1_4:1046094-1046113 Msa0142220:CDS 35.0%
ACAGTAATAGAGTCAGATGA+GGG - chr1_4:1046127-1046146 Msa0142220:CDS 35.0%
GATTGCCATATGCTATACAA+AGG - chr1_4:1046275-1046294 Msa0142220:intron 35.0%
GTTCACCTTTGTATAGCATA+TGG + chr1_4:1046283-1046302 None:intergenic 35.0%
GTGAACAAGAGTTGTTTGTA+GGG - chr1_4:1046297-1046316 Msa0142220:intron 35.0%
TACAAGATGCACAACAAACT+CGG - chr1_4:1046788-1046807 Msa0142220:intron 35.0%
!!! TTTTCTGTTTAGGCTCTAGA+GGG + chr1_4:1046878-1046897 None:intergenic 35.0%
! TCTAGAGCCTAAACAGAAAA+CGG - chr1_4:1046878-1046897 Msa0142220:intron 35.0%
! AAAGATTTTGTCGTGGAGAT+GGG + chr1_4:1047106-1047125 None:intergenic 35.0%
! TAAAGATTTTGTCGTGGAGA+TGG + chr1_4:1047107-1047126 None:intergenic 35.0%
! AGGAGATAAAGATTTTGTCG+TGG + chr1_4:1047113-1047132 None:intergenic 35.0%
! ATAACGGTTTTCGGATGATT+TGG + chr1_4:1047218-1047237 None:intergenic 35.0%
ACCAAATCTGTTCCTGTTAT+GGG + chr1_4:1047277-1047296 None:intergenic 35.0%
TAGATTGTGTGATGTGTGAA+GGG + chr1_4:1047398-1047417 None:intergenic 35.0%
TTAGATTGTGTGATGTGTGA+AGG + chr1_4:1047399-1047418 None:intergenic 35.0%
ACACATCACACAATCTAAAG+AGG - chr1_4:1047401-1047420 Msa0142220:intron 35.0%
ACACAATCTAAAGAGGTTTC+CGG - chr1_4:1047408-1047427 Msa0142220:intron 35.0%
GTTAAGACAAGTCCTATTAC+CGG + chr1_4:1047430-1047449 None:intergenic 35.0%
!! TAACGAAAGATTAGTCTTGG+TGG - chr1_4:1047446-1047465 Msa0142220:CDS 35.0%
!! AACGAAAGATTAGTCTTGGT+GGG - chr1_4:1047447-1047466 Msa0142220:CDS 35.0%
! AAGTATTGCGGGTATTCTTT+AGG + chr1_4:1047539-1047558 None:intergenic 35.0%
! ACACGTAATACAAGTATTGC+GGG + chr1_4:1047550-1047569 None:intergenic 35.0%
TTGACTTTGATATAGGCAAG+AGG - chr1_4:1047791-1047810 Msa0142220:intron 35.0%
AGTGACTTCAAAGAAGCAAA+AGG - chr1_4:1042698-1042717 Msa0142220:intron 35.0%
AGTAGTCAAAATTAGTTCGG+AGG - chr1_4:1047897-1047916 Msa0142220:intron 35.0%
!! GAATTTCACCGATTTGAGTT+TGG + chr1_4:1048077-1048096 None:intergenic 35.0%
GTTCCCCTCAAATTAAAATG+GGG + chr1_4:1048099-1048118 None:intergenic 35.0%
GAACATTCTGCATAATAGGT+AGG + chr1_4:1048257-1048276 None:intergenic 35.0%
GAAGGAACATTCTGCATAAT+AGG + chr1_4:1048261-1048280 None:intergenic 35.0%
! ATGAAGCATTCATGTGTTCT+TGG - chr1_4:1044065-1044084 Msa0142220:CDS 35.0%
TTCAGGAAGATATAGGAGAT+TGG + chr1_4:1044178-1044197 None:intergenic 35.0%
TGTCAAACTTCTACCTAATC+AGG + chr1_4:1048506-1048525 None:intergenic 35.0%
AGTTTGACATTTGGATCTTC+AGG - chr1_4:1048517-1048536 Msa0142220:intron 35.0%
! TGAATATCCGCTTTCTTTTC+AGG + chr1_4:1044414-1044433 None:intergenic 35.0%
! TCATTTTGTTCCATCTAGTG+AGG - chr1_4:1048720-1048739 Msa0142220:intron 35.0%
GTCAATCATACAACCATTAG+AGG + chr1_4:1048857-1048876 None:intergenic 35.0%
! CGACATATTTAAGATTCTCG+TGG - chr1_4:1044938-1044957 Msa0142220:intron 35.0%
GATCTTGAAAGTTTGGAGAA+TGG - chr1_4:1044981-1045000 Msa0142220:intron 35.0%
TAAGATTCTTCAAGTCATCG+CGG - chr1_4:1045004-1045023 Msa0142220:intron 35.0%
AAAGATAGGGTTAACGAAGA+TGG + chr1_4:1049303-1049322 None:intergenic 35.0%
TCTTCGTTAACCCTATCTTT+CGG - chr1_4:1049303-1049322 Msa0142220:intron 35.0%
AAAACGCTGAAAAGGACTTA+AGG - chr1_4:1049354-1049373 Msa0142220:intron 35.0%
AAACGCTGAAAAGGACTTAA+GGG - chr1_4:1049355-1049374 Msa0142220:intron 35.0%
TGAAAAGGACTTAAGGGATA+AGG - chr1_4:1045169-1045188 Msa0142220:intron 35.0%
GATTGGTGTAGTCTGTAATA+TGG - chr1_4:1045355-1045374 Msa0142220:intron 35.0%
TACTCTTCTTCGAAAAGATG+GGG - chr1_4:1045451-1045470 Msa0142220:intron 35.0%
GAGCAATTATATTGATGGGA+AGG - chr1_4:1045494-1045513 Msa0142220:intron 35.0%
CCTCACACACATCATAAAAA+TGG + chr1_4:1050052-1050071 None:intergenic 35.0%
!! CCATTTTTATGATGTGTGTG+AGG - chr1_4:1050049-1050068 Msa0142220:intron 35.0%
ATTAAAGTTGCCCAATCTGA+TGG + chr1_4:1050124-1050143 None:intergenic 35.0%
! ATGCCTTTTCACGTTTTACT+TGG + chr1_4:1046011-1046030 None:intergenic 35.0%
AATCACAGAAAACAAGTTCG+AGG - chr1_4:1050287-1050306 Msa0142220:CDS 35.0%
ATCACAGAAAACAAGTTCGA+GGG - chr1_4:1050288-1050307 Msa0142220:CDS 35.0%
!!! TTTTGGAGTACGTCATAATG+AGG - chr1_4:1050433-1050452 Msa0142220:CDS 35.0%
GATTGCCATATGCTATACAA+AGG - chr1_4:1046275-1046294 Msa0142220:intron 35.0%
GTTCACCTTTGTATAGCATA+TGG + chr1_4:1046283-1046302 None:intergenic 35.0%
GTGAACAAGAGTTGTTTGTA+GGG - chr1_4:1046297-1046316 Msa0142220:intron 35.0%
!! TGTTTGTTGTTTGCTTAGAG+AGG + chr1_4:1050701-1050720 None:intergenic 35.0%
TGAATGTCATTGGAATCCAA+AGG + chr1_4:1050750-1050769 None:intergenic 35.0%
GTCTGTTCTATGAATGTCAT+TGG + chr1_4:1050760-1050779 None:intergenic 35.0%
TTGACTTTGATATAGGCAAG+AGG - chr1_4:1047791-1047810 Msa0142220:intron 35.0%
AAAGAAGCAAAAGGTAGATG+AGG - chr1_4:1047846-1047865 Msa0142220:intron 35.0%
!! TGCCAAACAAAAGGTATTGA+AGG - chr1_4:1042734-1042753 Msa0142220:intron 35.0%
! ATGGAACAACTTTTGTTGCA+GGG + chr1_4:1051200-1051219 None:intergenic 35.0%
! TCATCTTCTGAAGAATCTTC+TGG - chr1_4:1051264-1051283 Msa0142220:intron 35.0%
TGAATCTTCTGATGAAGATG+AGG - chr1_4:1051287-1051306 Msa0142220:intron 35.0%
GAAGTTGTTCCTTCCAAAAT+AGG - chr1_4:1051439-1051458 Msa0142220:intron 35.0%
TACAATATGGCTGATATGGA+AGG + chr1_4:1051542-1051561 None:intergenic 35.0%
AGGTTACAATATGGCTGATA+TGG + chr1_4:1051546-1051565 None:intergenic 35.0%
!! GTAACCTTTTAACTCTTGGT+TGG - chr1_4:1051559-1051578 Msa0142220:intron 35.0%
AACACCAACCAAGAGTTAAA+AGG + chr1_4:1051566-1051585 None:intergenic 35.0%
GGACATATGTTGAAATGTTG+AGG + chr1_4:1051597-1051616 None:intergenic 35.0%
ATATGTCCTACATTCATTCG+TGG - chr1_4:1051609-1051628 Msa0142220:intron 35.0%
TATGTCCTACATTCATTCGT+GGG - chr1_4:1051610-1051629 Msa0142220:intron 35.0%
ATATGGTCTTCAACCCATTA+GGG + chr1_4:1051639-1051658 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG + chr1_4:1051673-1051692 None:intergenic 35.0%
AGAAGTTGCAATCACGTTAA+GGG + chr1_4:1051724-1051743 None:intergenic 35.0%
AAGAAGTTGCAATCACGTTA+AGG + chr1_4:1051725-1051744 None:intergenic 35.0%
!! TTTTGTGTAGCTGGAGTATT+AGG + chr1_4:1051787-1051806 None:intergenic 35.0%
CGTGTGAAGACATTATATGT+TGG - chr1_4:1051817-1051836 Msa0142220:CDS 35.0%
TATGTTGGGAACTTATCCTT+CGG - chr1_4:1051832-1051851 Msa0142220:CDS 35.0%
CATAAGGATGGAAAGCTTAA+AGG - chr1_4:1052001-1052020 Msa0142220:CDS 35.0%
ATGTCAAGAGCTTACGTATT+GGG + chr1_4:1052062-1052081 None:intergenic 35.0%
! TTTACTTCATGGACTGTTAC+AGG - chr1_4:1052398-1052417 Msa0142220:intron 35.0%
GAGGAAATATACCTTGGTAT+AGG + chr1_4:1052447-1052466 None:intergenic 35.0%
CATAGTACAACAGCAAAAAG+AGG + chr1_4:1052466-1052485 None:intergenic 35.0%
TGAACAACTTCTCGATGAAT+AGG - chr1_4:1052516-1052535 Msa0142220:intron 35.0%
GAACAACTTCTCGATGAATA+GGG - chr1_4:1052517-1052536 Msa0142220:intron 35.0%
AAAGAAGCAAAAGGTAGACG+AGG - chr1_4:1042707-1042726 Msa0142220:intron 40.0%
AGGTAGTCGAAATTAGTTCG+AGG - chr1_4:1042754-1042773 Msa0142220:intron 40.0%
GGAATCCTTTGATGAATCTG+AGG - chr1_4:1042775-1042794 Msa0142220:intron 40.0%
TGTGGGGAACTTATCATTCA+AGG - chr1_4:1042938-1042957 Msa0142220:intron 40.0%
CAACAACCATTCCACAATCT+TGG + chr1_4:1043068-1043087 None:intergenic 40.0%
GGTAAGAGAAAAAAGCCACT+AGG - chr1_4:1043105-1043124 Msa0142220:intron 40.0%
ACAGGCACTTGATAAGAATG+GGG - chr1_4:1043296-1043315 Msa0142220:intron 40.0%
TCCATATCTACTCATCCTCA+AGG - chr1_4:1043368-1043387 Msa0142220:CDS 40.0%
TCCTTGAGGATGAGTAGATA+TGG + chr1_4:1043372-1043391 None:intergenic 40.0%
AGTAACAACTCAGCTGAAAG+TGG - chr1_4:1043508-1043527 Msa0142220:CDS 40.0%
!! AGGGGTTTTGGTAAGAGTAA+TGG - chr1_4:1043547-1043566 Msa0142220:CDS 40.0%
! TAAGAGTAATGGAGAGGATG+AGG - chr1_4:1043558-1043577 Msa0142220:CDS 40.0%
GCTTACCACACTAACTGTAA+AGG - chr1_4:1044108-1044127 Msa0142220:CDS 40.0%
GGAAGATATAGGAGATTGGT+TGG + chr1_4:1044174-1044193 None:intergenic 40.0%
AAGAAACAGCTTCTGCTTCA+GGG + chr1_4:1044374-1044393 None:intergenic 40.0%
GGAATCTTCTGATGAAGATG+AGG - chr1_4:1044452-1044471 Msa0142220:intron 40.0%
TTATGCAAGAAATGTGTCCC+CGG - chr1_4:1044887-1044906 Msa0142220:intron 40.0%
AAACTTTCAAGATCCACGTC+AGG + chr1_4:1044975-1044994 None:intergenic 40.0%
TGACGTGGATCTTGAAAGTT+TGG - chr1_4:1044974-1044993 Msa0142220:intron 40.0%
GTTGTTGAACCGAAGAGTAA+TGG - chr1_4:1045068-1045087 Msa0142220:intron 40.0%
TGACCACAACCATTACTCTT+CGG + chr1_4:1045080-1045099 None:intergenic 40.0%
GATAGATAGGGTTAACGAAG+AGG + chr1_4:1045112-1045131 None:intergenic 40.0%
!! AAAGCGCTGAAAAGGACTTA+AGG - chr1_4:1045162-1045181 Msa0142220:intron 40.0%
!! AAGCGCTGAAAAGGACTTAA+GGG - chr1_4:1045163-1045182 Msa0142220:intron 40.0%
!! AATCCATCAGAGTTGGTCTT+CGG + chr1_4:1045432-1045451 None:intergenic 40.0%
GAAGAGTAATCCATCAGAGT+TGG + chr1_4:1045439-1045458 None:intergenic 40.0%
ATCATGACGAAGAAGTTCGA+GGG - chr1_4:1045531-1045550 Msa0142220:intron 40.0%
! AGTGCCTTTTGCATTACCTT+CGG + chr1_4:1045580-1045599 None:intergenic 40.0%
!! CATTTTAGCATGAGCAAGCA+AGG - chr1_4:1045782-1045801 Msa0142220:intron 40.0%
TGCCTTTGCATTCTTTCAAC+TGG - chr1_4:1045825-1045844 Msa0142220:intron 40.0%
GACCAGTTGAAAGAATGCAA+AGG + chr1_4:1045830-1045849 None:intergenic 40.0%
CAACCACATGACGATTCAAT+AGG - chr1_4:1046055-1046074 Msa0142220:CDS 40.0%
GAAAACAAGTTCAAGGGGTT+TGG - chr1_4:1046099-1046118 Msa0142220:CDS 40.0%
GACAGTAATAGAGTCAGATG+AGG - chr1_4:1046126-1046145 Msa0142220:CDS 40.0%
GTTGTCTTGGTAAAACCCAT+AGG + chr1_4:1046156-1046175 None:intergenic 40.0%
TTTCGCTCTTCATGTTGTCT+TGG + chr1_4:1046169-1046188 None:intergenic 40.0%
GGTGAACAAGAGTTGTTTGT+AGG - chr1_4:1046296-1046315 Msa0142220:intron 40.0%
GTAGGGACAATTGTTCAACA+AGG - chr1_4:1046314-1046333 Msa0142220:intron 40.0%
CTACAAGCTAGATTAGCAGT+GGG - chr1_4:1046410-1046429 Msa0142220:intron 40.0%
ATTAGCAGTGGGAATCTAAG+AGG - chr1_4:1046421-1046440 Msa0142220:intron 40.0%
ACAAGATGCACAACAAACTC+GGG - chr1_4:1046789-1046808 Msa0142220:intron 40.0%
!! TTTCTGTTTAGGCTCTAGAG+GGG + chr1_4:1046877-1046896 None:intergenic 40.0%
!! GTTTTCTGTTTAGGCTCTAG+AGG + chr1_4:1046879-1046898 None:intergenic 40.0%
CTAGAGCCTAAACAGAAAAC+GGG - chr1_4:1046879-1046898 Msa0142220:intron 40.0%
! ATAGTGCCCGTTTTCTGTTT+AGG + chr1_4:1046888-1046907 None:intergenic 40.0%
!!! TGTCTGCTGTTTTCATAGAG+AGG + chr1_4:1047001-1047020 None:intergenic 40.0%
GTCTGTTCTATGAATGGCAT+TGG + chr1_4:1047056-1047075 None:intergenic 40.0%
CATTCATAGAACAGACAAGC+CGG - chr1_4:1047060-1047079 Msa0142220:intron 40.0%
! AAGATTTTGTCGTGGAGATG+GGG + chr1_4:1047105-1047124 None:intergenic 40.0%
! ATGAATCTTTTTGTTGCCCG+AGG - chr1_4:1047236-1047255 Msa0142220:intron 40.0%
TCCCATAACAGGAACAGATT+TGG - chr1_4:1047273-1047292 Msa0142220:intron 40.0%
CACCAAATCTGTTCCTGTTA+TGG + chr1_4:1047278-1047297 None:intergenic 40.0%
CATAACAGGAACAGATTTGG+TGG - chr1_4:1047276-1047295 Msa0142220:intron 40.0%
GATAGTGTTATGAGATGGGT+GGG + chr1_4:1047318-1047337 None:intergenic 40.0%
GTGGGATAGTGTTATGAGAT+GGG + chr1_4:1047322-1047341 None:intergenic 40.0%
TGTGGGATAGTGTTATGAGA+TGG + chr1_4:1047323-1047342 None:intergenic 40.0%
ACTCACAATGGAGGAACAAA+TGG - chr1_4:1047355-1047374 Msa0142220:intron 40.0%
AGATTGTGTGATGTGTGAAG+GGG + chr1_4:1047397-1047416 None:intergenic 40.0%
CTAAAGAGGTTTCCGGTAAT+AGG - chr1_4:1047415-1047434 Msa0142220:intron 40.0%
!! TGCGGGTATTCTTTAGGATT+TGG + chr1_4:1047533-1047552 None:intergenic 40.0%
GAAGCAAAAGGTAGATGATG+AGG - chr1_4:1047849-1047868 Msa0142220:intron 40.0%
TGAGGTTGCTGCTAAACAAA+AGG - chr1_4:1047867-1047886 Msa0142220:intron 40.0%
GGAATCCTTTCATGAATCTG+AGG - chr1_4:1047918-1047937 Msa0142220:intron 40.0%
CACATCCTCAGATTCATGAA+AGG + chr1_4:1047926-1047945 None:intergenic 40.0%
CTTTCATGAATCTGAGGATG+TGG - chr1_4:1047924-1047943 Msa0142220:intron 40.0%
ACTTACCACACTAACTGCAA+AGG - chr1_4:1048401-1048420 Msa0142220:intron 40.0%
CATTTCCTTTGCAGTTAGTG+TGG + chr1_4:1048409-1048428 None:intergenic 40.0%
GGAAGATATAGGAGATTGGT+TGG + chr1_4:1044174-1044193 None:intergenic 40.0%
CAAACTTCTACCTAATCAGG+AGG + chr1_4:1048503-1048522 None:intergenic 40.0%
AAGAAACAGCTTCTGCTTCA+GGG + chr1_4:1044374-1044393 None:intergenic 40.0%
TCAGAAGATTCCTCACTAGA+TGG + chr1_4:1044444-1044463 None:intergenic 40.0%
GGAATCTTCTGATGAAGATG+AGG - chr1_4:1044452-1044471 Msa0142220:intron 40.0%
!! CCATTAGAGGTATCACTAGA+TGG + chr1_4:1048844-1048863 None:intergenic 40.0%
CCATCTAGTGATACCTCTAA+TGG - chr1_4:1048841-1048860 Msa0142220:intron 40.0%
TTATGCAAGAAATGTGTCCC+CGG - chr1_4:1044887-1044906 Msa0142220:intron 40.0%
AAACTTTCAAGATCCACGTC+AGG + chr1_4:1044975-1044994 None:intergenic 40.0%
TGACGTGGATCTTGAAAGTT+TGG - chr1_4:1044974-1044993 Msa0142220:intron 40.0%
TGACCACAACCATTACTCTT+CGG + chr1_4:1045080-1045099 None:intergenic 40.0%
ACTTGTGGAAAACGCTGAAA+AGG - chr1_4:1049346-1049365 Msa0142220:intron 40.0%
CTTGCTACTAACACAGTAAC+AGG + chr1_4:1049579-1049598 None:intergenic 40.0%
CTGTTACTGTGTTAGTAGCA+AGG - chr1_4:1049577-1049596 Msa0142220:intron 40.0%
!! AATCCATCAGAGTTGGTCTT+CGG + chr1_4:1045432-1045451 None:intergenic 40.0%
GAAGAGTAATCCATCAGAGT+TGG + chr1_4:1045439-1045458 None:intergenic 40.0%
ATCATGACGAAGAAGTTCGA+GGG - chr1_4:1045531-1045550 Msa0142220:intron 40.0%
! AGTGCCTTTTGCATTACCTT+GGG + chr1_4:1045580-1045599 None:intergenic 40.0%
! AAGTGCCTTTTGCATTACCT+TGG + chr1_4:1045581-1045600 None:intergenic 40.0%
!! AAGACAAGCATTTTAGCACG+AGG - chr1_4:1049974-1049993 Msa0142220:intron 40.0%
CATAGGCACATTGTTGAAAC+TGG + chr1_4:1050013-1050032 None:intergenic 40.0%
TGCCTATGCATTCTTTCAAC+TGG - chr1_4:1050025-1050044 Msa0142220:intron 40.0%
GACCAGTTGAAAGAATGCAT+AGG + chr1_4:1050030-1050049 None:intergenic 40.0%
ACAATTCACCACCATCAGAT+TGG - chr1_4:1045912-1045931 Msa0142220:intron 40.0%
CAATTCACCACCATCAGATT+GGG - chr1_4:1045913-1045932 Msa0142220:intron 40.0%
GCACCTATTGAATTGTCATG+TGG + chr1_4:1050256-1050275 None:intergenic 40.0%
CATGACAATTCAATAGGTGC+AGG - chr1_4:1050256-1050275 Msa0142220:CDS 40.0%
TCACAGAAAACAAGTTCGAG+GGG - chr1_4:1050289-1050308 Msa0142220:CDS 40.0%
ACAGTAGTAGAGTCAGATGA+GGG - chr1_4:1050322-1050341 Msa0142220:CDS 40.0%
GTTGTCTTGGTTAAACCCAT+AGG + chr1_4:1050351-1050370 None:intergenic 40.0%
TTTCGCTCTTCATGTTGTCT+TGG + chr1_4:1046169-1046188 None:intergenic 40.0%
GGTGAACAAGAGTTGTTTGT+AGG - chr1_4:1046296-1046315 Msa0142220:intron 40.0%
!!! TTTTGTTTTGCTGCTGCAGA+GGG + chr1_4:1050609-1050628 None:intergenic 40.0%
TGTCATTGGAATCCAAAGGA+AGG + chr1_4:1050746-1050765 None:intergenic 40.0%
CATTCATAGAACAGACAAGC+CGG - chr1_4:1047060-1047079 Msa0142220:intron 40.0%
GGTAGTCAAAATTAGTTCGC+AGG - chr1_4:1051046-1051065 Msa0142220:intron 40.0%
GGAATCCTTTCATGAATCTG+AGG - chr1_4:1047918-1047937 Msa0142220:intron 40.0%
CACATCCTCAGATTCATGAA+AGG + chr1_4:1047926-1047945 None:intergenic 40.0%
CTTTCATGAATCTGAGGATG+TGG - chr1_4:1047924-1047943 Msa0142220:intron 40.0%
! GATGGAACAACTTTTGTTGC+AGG + chr1_4:1051201-1051220 None:intergenic 40.0%
AGAACTATCAGCCTTCTTTG+CGG + chr1_4:1051473-1051492 None:intergenic 40.0%
CAGAAGATTCGTCAGATTCT+TGG + chr1_4:1051498-1051517 None:intergenic 40.0%
CAAGAATCTGACGAATCTTC+TGG - chr1_4:1051496-1051515 Msa0142220:intron 40.0%
TATGGTCTTCAACCCATTAG+GGG + chr1_4:1051638-1051657 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG + chr1_4:1051640-1051659 None:intergenic 40.0%
AGATGGAAGACCTGTTGATA+TGG + chr1_4:1051656-1051675 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG - chr1_4:1051664-1051683 Msa0142220:intron 40.0%
! CTGTTCACATTTTGTGTAGC+TGG + chr1_4:1051796-1051815 None:intergenic 40.0%
TGTACGTCTTGCTTCTCATA+AGG - chr1_4:1051985-1052004 Msa0142220:CDS 40.0%
GATGGAAAGCTTAAAGGCTT+TGG - chr1_4:1052007-1052026 Msa0142220:CDS 40.0%
GATGTCAAGAGCTTACGTAT+TGG + chr1_4:1052063-1052082 None:intergenic 40.0%
ACTCTTGTCTATTGTGTCGA+AGG - chr1_4:1052109-1052128 Msa0142220:intron 40.0%
TAATGGAATCGACACAAGTG+AGG + chr1_4:1052310-1052329 None:intergenic 40.0%
TATAAACCAGGCCTATACCA+AGG - chr1_4:1052433-1052452 Msa0142220:intron 40.0%
AATATACCTTGGTATAGGCC+TGG + chr1_4:1052442-1052461 None:intergenic 40.0%
GTTGTACTATGTTCTGCCAA+TGG - chr1_4:1052475-1052494 Msa0142220:intron 40.0%
! ATACATTGTTGCTTCAAGCG+TGG - chr1_4:1052610-1052629 Msa0142220:intron 40.0%
CACGTCCTCAGATTCATCAA+AGG + chr1_4:1042783-1042802 None:intergenic 45.0%
CTTTGATGAATCTGAGGACG+TGG - chr1_4:1042781-1042800 Msa0142220:intron 45.0%
! GTGTGAGTTTGAAACTGCAG+AGG - chr1_4:1043138-1043157 Msa0142220:intron 45.0%
GTTTCCATGGCACTTGTTTC+TGG - chr1_4:1043227-1043246 Msa0142220:intron 45.0%
GAATCCAGAAACAAGTGCCA+TGG + chr1_4:1043234-1043253 None:intergenic 45.0%
AACAACTCAGCTGAAAGTGG+CGG - chr1_4:1043511-1043530 Msa0142220:CDS 45.0%
TCACTGTGCATGAGCTGAAA+GGG + chr1_4:1043597-1043616 None:intergenic 45.0%
ATCACTGTGCATGAGCTGAA+AGG + chr1_4:1043598-1043617 None:intergenic 45.0%
! CATGCCAGTTGATACTCCTA+TGG + chr1_4:1044248-1044267 None:intergenic 45.0%
GAAGAAACAGCTTCTGCTTC+AGG + chr1_4:1044375-1044394 None:intergenic 45.0%
GAGTGCACCTGAAAAGAAAG+CGG - chr1_4:1044404-1044423 Msa0142220:intron 45.0%
!! GCTGCACTCCCTATTTTAGA+AGG + chr1_4:1044612-1044631 None:intergenic 45.0%
!! GTTGTTTCTCCTGTGAAGTC+TGG - chr1_4:1044840-1044859 Msa0142220:intron 45.0%
TTCTCCTGTGAAGTCTGGAA+CGG - chr1_4:1044845-1044864 Msa0142220:intron 45.0%
GTTTCTTAAGACCACATCCG+GGG + chr1_4:1044907-1044926 None:intergenic 45.0%
CGTTTCTTAAGACCACATCC+GGG + chr1_4:1044908-1044927 None:intergenic 45.0%
GCGTTTCTTAAGACCACATC+CGG + chr1_4:1044909-1044928 None:intergenic 45.0%
GGATTATCTCTTACCTGACG+TGG - chr1_4:1044959-1044978 Msa0142220:intron 45.0%
CATCAAAGATGACGTAACCG+AGG + chr1_4:1045049-1045068 None:intergenic 45.0%
GAACCGAAGAGTAATGGTTG+TGG - chr1_4:1045074-1045093 Msa0142220:intron 45.0%
AACCCTATCTATCGGAGAGA+AGG - chr1_4:1045119-1045138 Msa0142220:intron 45.0%
CTCCTTCTCTCCGATAGATA+GGG + chr1_4:1045124-1045143 None:intergenic 45.0%
ACTCCTTCTCTCCGATAGAT+AGG + chr1_4:1045125-1045144 None:intergenic 45.0%
AGGAGTCGCTTCTAAACTTG+TGG - chr1_4:1045139-1045158 Msa0142220:intron 45.0%
!! ACTTGTGGAAAGCGCTGAAA+AGG - chr1_4:1045154-1045173 Msa0142220:intron 45.0%
CTTGCTACTAACACAGCAAC+AGG + chr1_4:1045383-1045402 None:intergenic 45.0%
CTGTTGCTGTGTTAGTAGCA+AGG - chr1_4:1045381-1045400 Msa0142220:intron 45.0%
!! ATCCATCAGAGTTGGTCTTC+GGG + chr1_4:1045431-1045450 None:intergenic 45.0%
CGAAAAGATGGGGTATGAGA+AGG - chr1_4:1045461-1045480 Msa0142220:intron 45.0%
AAAGATGGGGTATGAGAAGG+AGG - chr1_4:1045464-1045483 Msa0142220:intron 45.0%
CATCATGACGAAGAAGTTCG+AGG - chr1_4:1045530-1045549 Msa0142220:intron 45.0%
TCATGACGAAGAAGTTCGAG+GGG - chr1_4:1045532-1045551 Msa0142220:intron 45.0%
GAGACCGAAGGTAATGCAAA+AGG - chr1_4:1045573-1045592 Msa0142220:intron 45.0%
GCACCTATTGAATCGTCATG+TGG + chr1_4:1046061-1046080 None:intergenic 45.0%
CATGACGATTCAATAGGTGC+AGG - chr1_4:1046061-1046080 Msa0142220:CDS 45.0%
AGTCAGATGAGGGTAACCTA+TGG - chr1_4:1046137-1046156 Msa0142220:CDS 45.0%
GTCAGATGAGGGTAACCTAT+GGG - chr1_4:1046138-1046157 Msa0142220:CDS 45.0%
GCATATGGCAATCGTAGACT+TGG + chr1_4:1046268-1046287 None:intergenic 45.0%
GCTACAAGCTAGATTAGCAG+TGG - chr1_4:1046409-1046428 Msa0142220:intron 45.0%
GGTTTGAACAACATGCTGAG+AGG - chr1_4:1046442-1046461 Msa0142220:intron 45.0%
TGAACAACATGCTGAGAGGA+AGG - chr1_4:1046446-1046465 Msa0142220:intron 45.0%
GATGATGAAACCGATCACAG+TGG - chr1_4:1046471-1046490 Msa0142220:intron 45.0%
GCTCTTTCAAGAGGTTCTCT+TGG + chr1_4:1046497-1046516 None:intergenic 45.0%
CAAGATGCACAACAAACTCG+GGG - chr1_4:1046790-1046809 Msa0142220:intron 45.0%
AAGATGCACAACAAACTCGG+GGG - chr1_4:1046791-1046810 Msa0142220:intron 45.0%
! CTGTTTTCATAGAGAGGCTG+AGG + chr1_4:1046995-1047014 None:intergenic 45.0%
CGGCTTGTCTGTTCTATGAA+TGG + chr1_4:1047062-1047081 None:intergenic 45.0%
AGAAGTGGAAGAGCTAATGG+AGG + chr1_4:1047133-1047152 None:intergenic 45.0%
TGGAGAAGTGGAAGAGCTAA+TGG + chr1_4:1047136-1047155 None:intergenic 45.0%
! ATGCAGTGGTGTGGAGTATT+TGG + chr1_4:1047194-1047213 None:intergenic 45.0%
GTTCCTGTTATGGGAGAGTT+GGG + chr1_4:1047268-1047287 None:intergenic 45.0%
TGTTCCTGTTATGGGAGAGT+TGG + chr1_4:1047269-1047288 None:intergenic 45.0%
GGATAGTGTTATGAGATGGG+TGG + chr1_4:1047319-1047338 None:intergenic 45.0%
AACACTATCCCACACCTTCA+TGG - chr1_4:1047329-1047348 Msa0142220:intron 45.0%
! TGAGTTTGCCATGAAGGTGT+GGG + chr1_4:1047340-1047359 None:intergenic 45.0%
CCATTGTGAGTTTGCCATGA+AGG + chr1_4:1047346-1047365 None:intergenic 45.0%
CCTTCATGGCAAACTCACAA+TGG - chr1_4:1047343-1047362 Msa0142220:intron 45.0%
TCATGGCAAACTCACAATGG+AGG - chr1_4:1047346-1047365 Msa0142220:intron 45.0%
TGGTGGGAATCCGATTATGA+AGG - chr1_4:1047463-1047482 Msa0142220:CDS 45.0%
!! TGTGTCTCCTTCTAAAGTCG+CGG + chr1_4:1047505-1047524 None:intergenic 45.0%
GCAAGCTGAGGAAGAAGTTA+AGG - chr1_4:1047813-1047832 Msa0142220:intron 45.0%
TGATAGGACTCCTCCTGATT+AGG - chr1_4:1048490-1048509 Msa0142220:intron 45.0%
!! GGATCTTCAGGAGTATCAAC+TGG - chr1_4:1048529-1048548 Msa0142220:intron 45.0%
GAAGAAACAGCTTCTGCTTC+AGG + chr1_4:1044375-1044394 None:intergenic 45.0%
GAGTGCACCTGAAAAGAAAG+CGG - chr1_4:1044404-1044423 Msa0142220:intron 45.0%
!! GTTGTTTCTCCTGTGAAGTC+TGG - chr1_4:1044840-1044859 Msa0142220:intron 45.0%
GTTTCTTAAGACCACATCCG+GGG + chr1_4:1044907-1044926 None:intergenic 45.0%
CGTTTCTTAAGACCACATCC+GGG + chr1_4:1044908-1044927 None:intergenic 45.0%
GCGTTTCTTAAGACCACATC+CGG + chr1_4:1044909-1044928 None:intergenic 45.0%
GGATTATCTCTTACCTGACG+TGG - chr1_4:1044959-1044978 Msa0142220:intron 45.0%
CATCAAAGATGACGTAACCG+AGG + chr1_4:1045049-1045068 None:intergenic 45.0%
GTCGTTGAACCGAAGAGTAA+TGG - chr1_4:1049260-1049279 Msa0142220:intron 45.0%
GAACCGAAGAGTAATGGTTG+TGG - chr1_4:1045074-1045093 Msa0142220:intron 45.0%
AACCCTATCTTTCGGAGAGA+AGG - chr1_4:1049311-1049330 Msa0142220:intron 45.0%
CTCCTTCTCTCCGAAAGATA+GGG + chr1_4:1049316-1049335 None:intergenic 45.0%
ACTCCTTCTCTCCGAAAGAT+AGG + chr1_4:1049317-1049336 None:intergenic 45.0%
AGGAGTCGCTTCTAAACTTG+TGG - chr1_4:1045139-1045158 Msa0142220:intron 45.0%
!! ATCAGAGTTGGTCTTCGGAA+CGG + chr1_4:1049623-1049642 None:intergenic 45.0%
CGAAAAGATGGGGTATGAGA+AGG - chr1_4:1045461-1045480 Msa0142220:intron 45.0%
AAAGATGGGGTATGAGAAGG+AGG - chr1_4:1045464-1045483 Msa0142220:intron 45.0%
CATCATGACGAAGAAGTTCG+AGG - chr1_4:1045530-1045549 Msa0142220:intron 45.0%
TCATGACGAAGAAGTTCGAG+GGG - chr1_4:1045532-1045551 Msa0142220:intron 45.0%
GAGACCCAAGGTAATGCAAA+AGG - chr1_4:1049769-1049788 Msa0142220:intron 45.0%
!! CATTTTAGCACGAGGAAGCA+AGG - chr1_4:1049982-1050001 Msa0142220:intron 45.0%
GGCACATTGTTGAAACTGGT+TGG + chr1_4:1050009-1050028 None:intergenic 45.0%
AAAGTTGCCCAATCTGATGG+TGG + chr1_4:1050121-1050140 None:intergenic 45.0%
GACAGTAGTAGAGTCAGATG+AGG - chr1_4:1050321-1050340 Msa0142220:CDS 45.0%
AGTCAGATGAGGGTAACCTA+TGG - chr1_4:1046137-1046156 Msa0142220:CDS 45.0%
GTCAGATGAGGGTAACCTAT+GGG - chr1_4:1046138-1046157 Msa0142220:CDS 45.0%
GCATATGGCAATCGTAGACT+TGG + chr1_4:1046268-1046287 None:intergenic 45.0%
TAGAAAACGGGCACTATGAC+AGG - chr1_4:1050567-1050586 Msa0142220:intron 45.0%
!!! GTTTTGTTTTGCTGCTGCAG+AGG + chr1_4:1050610-1050629 None:intergenic 45.0%
TTGTTTGCTTAGAGAGGCTG+AGG + chr1_4:1050695-1050714 None:intergenic 45.0%
TCCTAGCTCGATTCAAAAGC+CGG - chr1_4:1050885-1050904 Msa0142220:intron 45.0%
TGAGGTTGCTGCCAAACAAA+AGG - chr1_4:1051016-1051035 Msa0142220:intron 45.0%
! TACAGGTGCACTCCCATTTT+TGG + chr1_4:1051223-1051242 None:intergenic 45.0%
!! GGTGCACTTCCTATTTTGGA+AGG + chr1_4:1051451-1051470 None:intergenic 45.0%
GAACTATCAGCCTTCTTTGC+GGG + chr1_4:1051472-1051491 None:intergenic 45.0%
CGAATCTTCTGGTGAAGATG+AGG - chr1_4:1051507-1051526 Msa0142220:intron 45.0%
GGGTTGAAGACCATATCAAC+AGG - chr1_4:1051643-1051662 Msa0142220:intron 45.0%
! GTCAGATTTTTGCACACCGA+AGG + chr1_4:1051851-1051870 None:intergenic 45.0%
CGTCTTGCTTCTCATAAGGA+TGG - chr1_4:1051989-1052008 Msa0142220:CDS 45.0%
TGTTGAGTTTGCAACTGCAG+AGG - chr1_4:1052033-1052052 Msa0142220:CDS 45.0%
! CTGTCCGACTTGATTTAGCT+CGG - chr1_4:1052209-1052228 Msa0142220:intron 45.0%
! TGTCCGACTTGATTTAGCTC+GGG - chr1_4:1052210-1052229 Msa0142220:intron 45.0%
TCTCCCGAGCTAAATCAAGT+CGG + chr1_4:1052216-1052235 None:intergenic 45.0%
! ACTTGATTTAGCTCGGGAGA+GGG - chr1_4:1052216-1052235 Msa0142220:intron 45.0%
CGTGCAGGATTCTATAAACC+AGG - chr1_4:1052421-1052440 Msa0142220:intron 45.0%
GCAAGCTGAGGAAGAAGTCA+AGG - chr1_4:1042674-1042693 Msa0142220:CDS 50.0%
CGAGGTTGCTGCCAAACAAA+AGG - chr1_4:1042725-1042744 Msa0142220:intron 50.0%
CACACATGTGCATAGCCTAG+TGG + chr1_4:1043123-1043142 None:intergenic 50.0%
ATGTCGAGAGCTTACGCGTT+TGG + chr1_4:1043167-1043186 None:intergenic 50.0%
ATGTCCGACTTCAAGAAGCC+CGG - chr1_4:1043337-1043356 Msa0142220:CDS 50.0%
ACTTCCGGGCTTCTTGAAGT+CGG + chr1_4:1043344-1043363 None:intergenic 50.0%
TAGATATGGACGCCACTTCC+GGG + chr1_4:1043358-1043377 None:intergenic 50.0%
GTAGATATGGACGCCACTTC+CGG + chr1_4:1043359-1043378 None:intergenic 50.0%
CACTGTGCATGAGCTGAAAG+GGG + chr1_4:1043596-1043615 None:intergenic 50.0%
GCAAGCTCCCCCTAAATCTA+AGG - chr1_4:1043796-1043815 Msa0142220:intron 50.0%
GGGGAGCCTCTATCAAATTC+AGG + chr1_4:1044195-1044214 None:intergenic 50.0%
TGATAGAGGCTCCCCTGATT+AGG - chr1_4:1044200-1044219 Msa0142220:intron 50.0%
AAGAAATGTGTCCCCGGATG+TGG - chr1_4:1044893-1044912 Msa0142220:intron 50.0%
!! ATCAGAGTTGGTCTTCGGGA+CGG + chr1_4:1045427-1045446 None:intergenic 50.0%
GGGGAAGCAGATGCATTATG+CGG - chr1_4:1045551-1045570 Msa0142220:intron 50.0%
ATGCATTATGCGGAGACCGA+AGG - chr1_4:1045561-1045580 Msa0142220:intron 50.0%
GTTCTCTTGGCCACTGTGAT+CGG + chr1_4:1046484-1046503 None:intergenic 50.0%
CGGTATGTCGGAGACTATGT+CGG + chr1_4:1046839-1046858 None:intergenic 50.0%
CGACATAGTCTCCGACATAC+CGG - chr1_4:1046837-1046856 Msa0142220:intron 50.0%
TCCGACATACCGGAAAACTC+CGG - chr1_4:1046847-1046866 Msa0142220:intron 50.0%
! ACCGGAGTTTTCCGGTATGT+CGG + chr1_4:1046851-1046870 None:intergenic 50.0%
! AGGGGTTTACCGGAGTTTTC+CGG + chr1_4:1046859-1046878 None:intergenic 50.0%
!! TAGGCTCTAGAGGGGTTTAC+CGG + chr1_4:1046869-1046888 None:intergenic 50.0%
CAGAAAACGGGCACTATGAC+AGG - chr1_4:1046891-1046910 Msa0142220:intron 50.0%
TATAGCAGAGGGCTTAGGCA+GGG + chr1_4:1046923-1046942 None:intergenic 50.0%
ATATAGCAGAGGGCTTAGGC+AGG + chr1_4:1046924-1046943 None:intergenic 50.0%
ACGCATATAGCAGAGGGCTT+AGG + chr1_4:1046928-1046947 None:intergenic 50.0%
GTCAGCACGCATATAGCAGA+GGG + chr1_4:1046934-1046953 None:intergenic 50.0%
TGTCAGCACGCATATAGCAG+AGG + chr1_4:1046935-1046954 None:intergenic 50.0%
! TGTGGAGTATTTGGCGAGCT+AGG + chr1_4:1047185-1047204 None:intergenic 50.0%
! TGATTTGGCATGCAGTGGTG+TGG + chr1_4:1047203-1047222 None:intergenic 50.0%
! TCGGATGATTTGGCATGCAG+TGG + chr1_4:1047208-1047227 None:intergenic 50.0%
CTGTTATGGGAGAGTTGGGA+CGG + chr1_4:1047264-1047283 None:intergenic 50.0%
GTGAGTTTGCCATGAAGGTG+TGG + chr1_4:1047341-1047360 None:intergenic 50.0%
TTGTGTGATGTGTGAAGGGG+AGG + chr1_4:1047394-1047413 None:intergenic 50.0%
GAGAATGCCGCGACTTTAGA+AGG - chr1_4:1047495-1047514 Msa0142220:CDS 50.0%
TATAGGCAAGAGGCAAGCTG+AGG - chr1_4:1047801-1047820 Msa0142220:intron 50.0%
GGAGGAGTCCTATCAGATTC+AGG + chr1_4:1048485-1048504 None:intergenic 50.0%
TTCTCCTGTGAAGTCTGGAG+CGG - chr1_4:1049037-1049056 Msa0142220:intron 50.0%
AAGAAATGTGTCCCCGGATG+TGG - chr1_4:1044893-1044912 Msa0142220:intron 50.0%
!! TCAGAGTTGGTCTTCGGAAC+GGG + chr1_4:1049622-1049641 None:intergenic 50.0%
GTTCCGAAGACCAACTCTGA+TGG - chr1_4:1049622-1049641 Msa0142220:intron 50.0%
GGGGAAGCAGATGCATTATG+CGG - chr1_4:1045551-1045570 Msa0142220:intron 50.0%
ATGCATTATGCGGAGACCCA+AGG - chr1_4:1049757-1049776 Msa0142220:intron 50.0%
GCGACAAACACTCCTTCCTT+TGG - chr1_4:1050731-1050750 Msa0142220:intron 50.0%
AGAAGTGGAAGAGCTAGTGG+AGG + chr1_4:1050837-1050856 None:intergenic 50.0%
TGGAGAAGTGGAAGAGCTAG+TGG + chr1_4:1050840-1050859 None:intergenic 50.0%
! TCCGGCTTTTGAATCGAGCT+AGG + chr1_4:1050889-1050908 None:intergenic 50.0%
TATAGGCAAGAGGCAAGCTG+TGG - chr1_4:1047801-1047820 Msa0142220:intron 50.0%
!! GGTGCACTCCCATTTTTGGA+TGG + chr1_4:1051219-1051238 None:intergenic 50.0%
GAAGGAACAACTTCTGCTGC+AGG + chr1_4:1051433-1051452 None:intergenic 50.0%
! TGCGGGTGCACTTCCTATTT+TGG + chr1_4:1051455-1051474 None:intergenic 50.0%
GGGTACCCACGAATGAATGT+AGG + chr1_4:1051618-1051637 None:intergenic 50.0%
TCATTCGTGGGTACCCCTAA+TGG - chr1_4:1051622-1051641 Msa0142220:intron 50.0%
CATTCGTGGGTACCCCTAAT+GGG - chr1_4:1051623-1051642 Msa0142220:intron 50.0%
! GACTTGATTTAGCTCGGGAG+AGG - chr1_4:1052215-1052234 Msa0142220:intron 50.0%
! CTTGATTTAGCTCGGGAGAG+GGG - chr1_4:1052217-1052236 Msa0142220:intron 50.0%
GACTTCAAGAAGCCCGGAAG+TGG - chr1_4:1043343-1043362 Msa0142220:CDS 55.0%
AACTCAGCTGAAAGTGGCGG+AGG - chr1_4:1043514-1043533 Msa0142220:CDS 55.0%
!! GGAGGCTTTGTCAGGGGTTT+TGG - chr1_4:1043535-1043554 Msa0142220:CDS 55.0%
! TCCTGTGAAGTCTGGAACGG+AGG - chr1_4:1044848-1044867 Msa0142220:intron 55.0%
TCCTCCGTTCCAGACTTCAC+AGG + chr1_4:1044852-1044871 None:intergenic 55.0%
GATCGCCTAGACGCTATCCT+CGG - chr1_4:1045029-1045048 Msa0142220:intron 55.0%
CGTAACCGAGGATAGCGTCT+AGG + chr1_4:1045037-1045056 None:intergenic 55.0%
!! TCAGAGTTGGTCTTCGGGAC+GGG + chr1_4:1045426-1045445 None:intergenic 55.0%
GTCCCGAAGACCAACTCTGA+TGG - chr1_4:1045426-1045445 Msa0142220:intron 55.0%
GATGGGGTATGAGAAGGAGG+CGG - chr1_4:1045467-1045486 Msa0142220:intron 55.0%
ATAGCAGAGGGCTTAGGCAG+GGG + chr1_4:1046922-1046941 None:intergenic 55.0%
! CGGTGTCTGCAGCTGCATTT+TGG + chr1_4:1046962-1046981 None:intergenic 55.0%
TCATAGAGAGGCTGAGGCTG+AGG + chr1_4:1046989-1047008 None:intergenic 55.0%
CGTCCCAACTCTCCCATAAC+AGG - chr1_4:1047262-1047281 Msa0142220:intron 55.0%
GTGTGAAGGGGAGGAGGAAT+CGG + chr1_4:1047385-1047404 None:intergenic 55.0%
TGTGATGTGTGAAGGGGAGG+AGG + chr1_4:1047391-1047410 None:intergenic 55.0%
GATCGCCAAGACGCTATCCT+CGG - chr1_4:1049221-1049240 Msa0142220:intron 55.0%
CGTAACCGAGGATAGCGTCT+TGG + chr1_4:1045037-1045056 None:intergenic 55.0%
TTTGCTGCTGCAGAGGGCTT+AGG + chr1_4:1050603-1050622 None:intergenic 55.0%
GCAAGCTGTGGAAGAAGTCG+AGG - chr1_4:1050965-1050984 Msa0142220:CDS 55.0%
! AGGAAGTGCACCCGCAAAGA+AGG - chr1_4:1051459-1051478 Msa0142220:intron 55.0%
! ATGGACTGTTACAGGCGTGC+AGG - chr1_4:1052406-1052425 Msa0142220:intron 55.0%
! TCAGCTGAAAGTGGCGGAGG+AGG - chr1_4:1043517-1043536 Msa0142220:CDS 60.0%
! TGGCGGAGGAGGCTTTGTCA+GGG - chr1_4:1043528-1043547 Msa0142220:CDS 60.0%
GAGGCTGAGGCTGAGGTTTG+CGG + chr1_4:1046982-1047001 None:intergenic 60.0%
! TCCTGTGAAGTCTGGAGCGG+AGG - chr1_4:1049040-1049059 Msa0142220:intron 60.0%
TCCTCCGCTCCAGACTTCAC+AGG + chr1_4:1049044-1049063 None:intergenic 60.0%
GCTTAGAGAGGCTGAGGCTG+AGG + chr1_4:1050689-1050708 None:intergenic 60.0%
! GTGGCGGAGGAGGCTTTGTC+AGG - chr1_4:1043527-1043546 Msa0142220:CDS 65.0%
! GGCGGAGGAGGCTTTGTCAG+GGG - chr1_4:1043529-1043548 Msa0142220:CDS 65.0%
GAGAGTTGGGACGGTGCCTC+GGG + chr1_4:1047255-1047274 None:intergenic 65.0%
GGAGAGTTGGGACGGTGCCT+CGG + chr1_4:1047256-1047275 None:intergenic 65.0%
TGCTGCAGAGGGCTTAGGCG+GGG + chr1_4:1050598-1050617 None:intergenic 65.0%
CTGCTGCAGAGGGCTTAGGC+GGG + chr1_4:1050599-1050618 None:intergenic 65.0%
GCTGCTGCAGAGGGCTTAGG+CGG + chr1_4:1050600-1050619 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1042669 1052696 1042669 ID=Msa0142220;Name=Msa0142220
chr1_4 mRNA 1042669 1052696 1042669 ID=Msa0142220-mRNA-1;Parent=Msa0142220;Name=Msa0142220-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.70|0.75|0.52|17|0|647
chr1_4 exon 1052619 1052696 1052619 ID=Msa0142220-mRNA-1:exon:337;Parent=Msa0142220-mRNA-1
chr1_4 exon 1051954 1052065 1051954 ID=Msa0142220-mRNA-1:exon:336;Parent=Msa0142220-mRNA-1
chr1_4 exon 1051809 1051855 1051809 ID=Msa0142220-mRNA-1:exon:335;Parent=Msa0142220-mRNA-1
chr1_4 exon 1050892 1050996 1050892 ID=Msa0142220-mRNA-1:exon:334;Parent=Msa0142220-mRNA-1
chr1_4 exon 1050363 1050507 1050363 ID=Msa0142220-mRNA-1:exon:333;Parent=Msa0142220-mRNA-1
chr1_4 exon 1050175 1050347 1050175 ID=Msa0142220-mRNA-1:exon:332;Parent=Msa0142220-mRNA-1
chr1_4 exon 1049783 1049966 1049783 ID=Msa0142220-mRNA-1:exon:331;Parent=Msa0142220-mRNA-1
chr1_4 exon 1047423 1047559 1047423 ID=Msa0142220-mRNA-1:exon:330;Parent=Msa0142220-mRNA-1
chr1_4 exon 1045983 1046222 1045983 ID=Msa0142220-mRNA-1:exon:329;Parent=Msa0142220-mRNA-1
chr1_4 exon 1045587 1045770 1045587 ID=Msa0142220-mRNA-1:exon:328;Parent=Msa0142220-mRNA-1
chr1_4 exon 1044328 1044407 1044328 ID=Msa0142220-mRNA-1:exon:327;Parent=Msa0142220-mRNA-1
chr1_4 exon 1044057 1044170 1044057 ID=Msa0142220-mRNA-1:exon:326;Parent=Msa0142220-mRNA-1
chr1_4 exon 1043837 1043938 1043837 ID=Msa0142220-mRNA-1:exon:325;Parent=Msa0142220-mRNA-1
chr1_4 exon 1043493 1043581 1043493 ID=Msa0142220-mRNA-1:exon:324;Parent=Msa0142220-mRNA-1
chr1_4 exon 1043327 1043416 1043327 ID=Msa0142220-mRNA-1:exon:323;Parent=Msa0142220-mRNA-1
chr1_4 exon 1042911 1042945 1042911 ID=Msa0142220-mRNA-1:exon:322;Parent=Msa0142220-mRNA-1
chr1_4 exon 1042669 1042694 1042669 ID=Msa0142220-mRNA-1:exon:321;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1052619 1052696 1052619 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1051954 1052065 1051954 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1051809 1051855 1051809 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1050892 1050996 1050892 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1050363 1050507 1050363 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1050175 1050347 1050175 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1049783 1049966 1049783 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1047423 1047559 1047423 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1045983 1046222 1045983 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1045587 1045770 1045587 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1044328 1044407 1044328 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1044057 1044170 1044057 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1043837 1043938 1043837 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1043493 1043581 1043493 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1043327 1043416 1043327 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1042911 1042945 1042911 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
chr1_4 CDS 1042669 1042694 1042669 ID=Msa0142220-mRNA-1:cds;Parent=Msa0142220-mRNA-1
Gene Sequence

>Msa0142220

AAGAGGCAAGCTGAGGAAGAAGTCAAGGCAGTGACTTCAAAGAAGCAAAAGGTAGACGAGGTTGCTGCCAAACAAAAGGCACTTGATAAGAATGGGGAAAAACTGTTGGATCGTGATGTCCGACTTCAAGAAGCCCGGAAGTGGCGTCCATATCTACTCATCCTCAAGGATATCCTCTTTTTATTGACAGTAACAACTCAGCTGAAAGTGGCGGAGGAGGCTTTGTCAGGGGTTTTGAACCCTGAAGCAGAAGCTGTTTCTTCTAAAATAGGGAGTGCACCTGAAAAGAAAGCGGATATTCATTTTGTTTCATCTAGTGAGGAATCTTCTGATGAAGATGAGTCTGGAACGGAGGAGTCACCCAAAATTCGTTATGCAAGAAATGTGTCCCCGGATGTGGTCTTAAGAAACGCAACATCTGACGACATATTTAAGATTCTCGTGGATTATCTCTTACCTGACGTGGATCTTGAAAGTTTGGAGAATGTCATCGCGGATGATCGCCTAGACGCTATCCTCGGTTACGTCATCTTTGATGTTGTTGAACCGAAGAGTAATGGTTGTGGTCATATCACTTCCCTCTTCGTTAACCCTATCTATCGGAGAGAAGGAGTCGCTTCTAAACTTGTGGAAAGCGCTGAAAAGGACTTAAGGGATAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTCCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCGGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGTTCGAGGGGAAGCAGATGCATTATGCGGAGACCGAAGGCAAGAGGCAAGCTGAGGAAGAAGTTAAGGAAGTGACTTCAAAGAAGCAAAAGGTAGATGATGAGGTTGCTGCTAAACAAAAGGTATTGAAAGTAGTCAAAATTAGTTCGGAGGAATCCTTTCATGAATCTGAGGATATTCTCGTGGATTATCTCTTACCTGACGTGGATCTTGAAAGTTTGGAGAATGGTAAGATTCTTCAAGTCATCGCGGATGATCGCCAAGACGCTATCCTCGGTTACGTCATCTTTGATGTCGTTGAACCGAAGAGTAATGGTTGTGGTCATATCACTTCCATCTTCGTTAACCCTATCTTTCGGAGAGAAGGAGTCGCTTCTAAACTTGTGGAAAACGCTGAAAAGGACTTAAGGGATAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTTCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCAGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGTTCGAGGGGAAGCAGATGCATTATGCGGAGACCCAAGGCAAGAGGCAAGCTGTGGAAGAAGTCGAGGAAGTTTCTTCAAAGAAGCAAAAGGTAGATGAGGTTGCTGCCAAACAAAAGAACCCTGCAACAAAAGTTGTTCCATCCAAAAATGGGAGTGCACCTGTAAAGAAAGACGATCTTTATTATTCATCTTCTGAAGAATCTTCTGGTGAATCTTCTGATGAAGATGAGAAACCTGCAGCAGAAGTTGTTCCTTCCAAAATAGGAAGTGCACCCGCAAAGAAGGCTGATAGTTCTGACCAAGAATCTGACGAATCTTCTGGTGAAGATGAGCCTAATACTCCAGCTACACAAAATGTGAACAGTCGTGTGAAGACATTATATGTTGGGAACTTATCCTTCGGTGTGCAAAAATCTGACATAGAAAAATTCTTCCAAGATTGTGGAAAAGTTATTGATGTACGTCTTGCTTCTCATAAGGATGGAAAGCTTAAAGGCTTTGGACATGTTGAGCGTGCAGGATTCTATAAACCAGGCCTATACCAAGGGAAAAAGACTACTTTTGCCGACGAC

Protein sequence

>Msa0142220

KRQAEEEVKAVTSKKQKVDEVAAKQKALDKNGEKLLDRDVRLQEARKWRPYLLILKDILFLLTVTTQLKVAEEALSGVLNPEAEAVSSKIGSAPEKKADIHFVSSSEESSDEDESGTEESPKIRYARNVSPDVVLRNATSDDIFKILVDYLLPDVDLESLENVIADDRLDAILGYVIFDVVEPKSNGCGHITSLFVNPIYRREGVASKLVESAEKDLRDKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANVIMTKKFEGKQMHYAETEGKRQAEEEVKEVTSKKQKVDDEVAAKQKVLKVVKISSEESFHESEDILVDYLLPDVDLESLENGKILQVIADDRQDAILGYVIFDVVEPKSNGCGHITSIFVNPIFRREGVASKLVENAEKDLRDKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANVIMTKKFEGKQMHYAETQGKRQAVEEVEEVSSKKQKVDEVAAKQKNPATKVVPSKNGSAPVKKDDLYYSSSEESSGESSDEDEKPAAEVVPSKIGSAPAKKADSSDQESDESSGEDEPNTPATQNVNSRVKTLYVGNLSFGVQKSDIEKFFQDCGKVIDVRLASHKDGKLKGFGHVERAGFYKPGLYQGKKTTFADD