AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891980 MtrunA17_Chr6g0473881 88.158 228 23 2 1 225 48 274 1.13e-142 400
Msa0891980 MtrunA17_Chr6g0473781 76.995 213 35 2 26 228 19 227 9.22e-116 330
Msa0891980 MtrunA17_Chr6g0473971 72.273 220 51 4 3 220 1 212 3.56e-107 308
Msa0891980 MtrunA17_Chr6g0473961 75.393 191 42 3 39 228 29 215 6.59e-106 304
Msa0891980 MtrunA17_Chr6g0474001 68.493 219 60 2 3 220 1 211 1.74e-102 297
Msa0891980 MtrunA17_Chr6g0473981 75.135 185 45 1 37 220 27 211 2.37e-100 291
Msa0891980 MtrunA17_Chr6g0473741 73.558 208 49 3 23 228 25 228 4.81e-99 287
Msa0891980 MtrunA17_Chr6g0473931 70.854 199 47 3 36 228 5 198 3.31e-93 271
Msa0891980 MtrunA17_Chr6g0473941 70.673 208 42 3 36 228 5 208 1.48e-92 270
Msa0891980 MtrunA17_Chr6g0473861 55.159 252 53 4 33 228 32 279 4.14e-79 238
Msa0891980 MtrunA17_Chr1g0203861 64.767 193 63 2 36 228 16 203 3.71e-77 231
Msa0891980 MtrunA17_Chr6g0473771 73.913 115 30 0 23 137 2 116 8.27e-59 181
Msa0891980 MtrunA17_Chr5g0398081 46.154 208 87 6 39 228 24 224 1.74e-53 171
Msa0891980 MtrunA17_Chr6g0473791 87.640 89 11 0 24 112 17 105 1.97e-52 166
Msa0891980 MtrunA17_Chr5g0398091 41.850 227 107 5 19 228 9 227 3.58e-51 166
Msa0891980 MtrunA17_Chr5g0398061 41.778 225 105 6 22 228 6 222 2.31e-48 158
Msa0891980 MtrunA17_Chr4g0057231 71.963 107 27 2 36 139 16 122 1.41e-47 154
Msa0891980 MtrunA17_Chr8g0334801 67.949 78 25 0 61 138 49 126 7.20e-34 120
Msa0891980 MtrunA17_Chr3g0140161 58.333 96 40 0 59 154 38 133 7.44e-34 120
Msa0891980 MtrunA17_Chr7g0232261 66.667 81 27 0 58 138 55 135 1.67e-33 120
Msa0891980 MtrunA17_Chr7g0265851 40.741 189 94 4 55 228 15 200 5.31e-33 118
Msa0891980 MtrunA17_Chr7g0275841 63.750 80 29 0 59 138 23 102 2.23e-31 113
Msa0891980 MtrunA17_Chr5g0399441 63.291 79 29 0 60 138 24 102 8.18e-31 112
Msa0891980 MtrunA17_Chr2g0321071 40.964 166 71 5 58 198 41 204 1.34e-30 112
Msa0891980 MtrunA17_Chr2g0331231 53.465 101 41 2 44 138 15 115 3.80e-30 111
Msa0891980 MtrunA17_Chr8g0390091 55.556 99 44 0 54 152 27 125 2.44e-29 109
Msa0891980 MtrunA17_Chr8g0340311 54.639 97 43 1 43 138 25 121 4.10e-29 108
Msa0891980 MtrunA17_Chr6g0486701 60.256 78 31 0 61 138 41 118 4.04e-28 106
Msa0891980 MtrunA17_Chr8g0346741 54.000 100 40 2 42 138 20 116 4.36e-28 104
Msa0891980 MtrunA17_Chr4g0057241 40.571 175 80 6 60 228 11 167 3.31e-27 102
Msa0891980 MtrunA17_Chr4g0055951 60.256 78 31 0 61 138 71 148 3.74e-26 102
Msa0891980 MtrunA17_Chr6g0486711 49.123 114 48 1 42 145 17 130 3.99e-24 96.3
Msa0891980 MtrunA17_Chr4g0017851 44.715 123 61 2 23 145 84 199 1.11e-23 96.3
Msa0891980 MtrunA17_Chr1g0146191 60.759 79 31 0 60 138 43 121 6.57e-22 90.9
Msa0891980 MtrunA17_Chr5g0396181 48.000 100 50 1 64 161 21 120 1.00e-20 86.3
Msa0891980 MtrunA17_Chr5g0396191 36.364 176 100 3 64 227 11 186 2.73e-19 82.0
Msa0891980 MtrunA17_Chr1g0150631 33.548 155 89 3 33 174 1 154 6.09e-19 82.4
Msa0891980 MtrunA17_Chr2g0295421 37.795 127 77 1 8 134 42 166 2.06e-18 81.3
Msa0891980 MtrunA17_Chr1g0150671 34.884 129 73 3 63 182 45 171 3.04e-17 78.6
Msa0891980 MtrunA17_Chr3g0134161 58.929 56 23 0 64 119 45 100 4.02e-17 75.9
Msa0891980 MtrunA17_Chr5g0437671 60.345 58 23 0 64 121 85 142 7.18e-17 78.6
Msa0891980 MtrunA17_Chr1g0179161 33.140 172 70 6 48 198 3 150 7.75e-17 75.1
Msa0891980 MtrunA17_Chr1g0196781 43.820 89 44 1 59 147 147 229 1.61e-16 77.0
Msa0891980 MtrunA17_Chr2g0301191 44.706 85 47 0 63 147 18 102 1.78e-16 75.1
Msa0891980 MtrunA17_Chr1g0150691 31.387 137 85 2 59 186 17 153 2.36e-16 75.1
Msa0891980 MtrunA17_Chr5g0425561 57.627 59 25 0 63 121 172 230 3.53e-16 76.6
Msa0891980 MtrunA17_Chr1g0153151 43.333 90 43 1 64 145 44 133 4.02e-16 73.6
Msa0891980 MtrunA17_Chr3g0115631 59.649 57 23 0 63 119 149 205 4.08e-16 75.9
Msa0891980 MtrunA17_Chr2g0334031 43.333 90 46 1 52 136 105 194 4.24e-16 76.3
Msa0891980 MtrunA17_Chr7g0221471 54.688 64 28 1 57 119 43 106 5.44e-16 73.2
Msa0891980 MtrunA17_Chr1g0203831 41.135 141 72 3 64 194 57 196 5.97e-16 73.6
Msa0891980 MtrunA17_Chr8g0382491 47.368 76 37 1 63 135 112 187 6.56e-16 74.7
Msa0891980 MtrunA17_Chr2g0324131 57.627 59 25 0 63 121 217 275 7.11e-16 75.9
Msa0891980 MtrunA17_Chr7g0221501 54.688 64 28 1 57 119 43 106 1.26e-15 72.0
Msa0891980 MtrunA17_Chr1g0186731 59.649 57 22 1 64 119 21 77 1.30e-15 71.2
Msa0891980 MtrunA17_Chr8g0375031 39.785 93 55 1 64 155 125 217 1.33e-15 73.2
Msa0891980 MtrunA17_Chr3g0136551 41.860 86 46 1 64 145 65 150 1.41e-15 73.9
Msa0891980 MtrunA17_Chr4g0044911 58.929 56 23 0 64 119 96 151 1.54e-15 73.2
Msa0891980 MtrunA17_Chr2g0301171 40.659 91 54 0 63 153 18 108 2.57e-15 72.0
Msa0891980 MtrunA17_Chr8g0383591 53.333 60 28 0 64 123 145 204 2.73e-15 73.6
Msa0891980 MtrunA17_Chr5g0401871 55.357 56 25 0 64 119 25 80 2.97e-15 71.2
Msa0891980 MtrunA17_Chr2g0323171 58.929 56 23 0 64 119 65 120 3.26e-15 71.2
Msa0891980 MtrunA17_Chr4g0044881 43.158 95 46 1 25 119 83 169 3.32e-15 72.4
Msa0891980 MtrunA17_Chr3g0099871 56.667 60 26 0 60 119 23 82 3.50e-15 72.0
Msa0891980 MtrunA17_Chr2g0316931 58.929 56 23 0 64 119 31 86 3.71e-15 71.6
Msa0891980 MtrunA17_Chr1g0195151 47.059 68 36 0 54 121 67 134 4.06e-15 72.8
Msa0891980 MtrunA17_Chr8g0344961 43.902 82 43 1 54 135 114 192 4.09e-15 73.6
Msa0891980 MtrunA17_Chr1g0150661 51.667 60 29 0 63 122 34 93 4.24e-15 71.6
Msa0891980 MtrunA17_Chr4g0044871 57.143 56 24 0 64 119 96 151 4.46e-15 71.6
Msa0891980 MtrunA17_Chr4g0044901 57.143 56 24 0 64 119 96 151 5.03e-15 71.6
Msa0891980 MtrunA17_Chr2g0282651 36.134 119 67 3 3 119 14 125 5.70e-15 71.6
Msa0891980 MtrunA17_Chr5g0437371 60.714 56 22 0 64 119 66 121 5.91e-15 72.8
Msa0891980 MtrunA17_Chr1g0158971 42.683 82 42 1 64 145 115 191 6.13e-15 72.8
Msa0891980 MtrunA17_Chr4g0023411 57.143 56 24 0 64 119 65 120 1.22e-14 70.1
Msa0891980 MtrunA17_Chr7g0225131 53.333 60 25 1 63 122 28 84 1.85e-14 66.6
Msa0891980 MtrunA17_Chr7g0257911 58.929 56 23 0 64 119 31 86 2.12e-14 70.9
Msa0891980 MtrunA17_Chr3g0136541 41.667 84 45 1 66 145 42 125 3.25e-14 69.7
Msa0891980 MtrunA17_Chr2g0297331 57.627 59 24 1 64 121 14 72 3.75e-14 67.0
Msa0891980 MtrunA17_Chr1g0189941 48.000 75 39 0 48 122 8 82 6.01e-14 67.4
Msa0891980 MtrunA17_Chr5g0396911 49.333 75 28 2 51 119 97 167 6.05e-14 69.7
Msa0891980 MtrunA17_Chr2g0283181 49.275 69 34 1 52 119 137 205 6.84e-14 69.3
Msa0891980 MtrunA17_Chr3g0126321 39.560 91 46 1 40 130 98 179 9.92e-14 69.3
Msa0891980 MtrunA17_Chr1g0170531 37.500 104 62 2 17 119 44 145 1.03e-13 68.2
Msa0891980 MtrunA17_Chr1g0184081 54.386 57 25 1 64 119 21 77 1.09e-13 66.2
Msa0891980 MtrunA17_Chr4g0055801 43.373 83 46 1 38 119 128 210 1.23e-13 68.6
Msa0891980 MtrunA17_Chr3g0137174 58.929 56 23 0 64 119 8 63 1.52e-13 66.6
Msa0891980 MtrunA17_Chr4g0002631 58.929 56 23 0 64 119 8 63 1.83e-13 66.6
Msa0891980 MtrunA17_Chr1g0186671 56.140 57 24 1 64 119 19 75 2.43e-13 65.1
Msa0891980 MtrunA17_Chr1g0186681 52.459 61 27 1 61 119 16 76 2.64e-13 64.7
Msa0891980 MtrunA17_Chr2g0301181 40.000 85 51 0 63 147 18 102 2.65e-13 67.0
Msa0891980 MtrunA17_Chr2g0282621 57.143 56 24 0 64 119 15 70 3.61e-13 65.5
Msa0891980 MtrunA17_Chr4g0063751 53.571 56 26 0 64 119 7 62 4.98e-13 65.9
Msa0891980 MtrunA17_Chr4g0055781 56.140 57 24 1 64 119 102 158 5.20e-13 66.2
Msa0891980 MtrunA17_Chr5g0438831 41.667 96 47 2 24 119 15 101 6.72e-13 66.2
Msa0891980 MtrunA17_Chr4g0003421 53.571 56 26 0 64 119 40 95 1.17e-12 65.5
Msa0891980 MtrunA17_Chr3g0114761 39.815 108 61 2 45 148 6 113 1.58e-12 64.7
Msa0891980 MtrunA17_Chr2g0333011 51.786 56 27 0 64 119 7 62 2.48e-12 63.2
Msa0891980 MtrunA17_Chr8g0387801 39.785 93 50 1 33 119 70 162 3.35e-12 64.7
Msa0891980 MtrunA17_Chr5g0438801 53.571 56 26 0 64 119 51 106 5.26e-12 63.9
Msa0891980 MtrunA17_Chr1g0196871 50.000 62 28 2 59 119 13 72 5.87e-12 60.5
Msa0891980 MtrunA17_Chr8g0367911 51.786 56 27 0 64 119 44 99 8.83e-12 63.2
Msa0891980 MtrunA17_Chr5g0432821 46.667 60 32 0 60 119 120 179 1.07e-11 63.2
Msa0891980 MtrunA17_Chr4g0046161 52.632 57 26 1 64 119 57 113 1.14e-11 60.1
Msa0891980 MtrunA17_Chr6g0453661 39.326 89 46 1 31 119 13 93 1.22e-11 63.5
Msa0891980 MtrunA17_Chr4g0026881 46.154 65 34 1 56 119 89 153 2.03e-11 61.6
Msa0891980 MtrunA17_Chr8g0335331 50.877 57 27 1 64 119 125 181 2.07e-11 61.2
Msa0891980 MtrunA17_Chr6g0461271 45.833 72 38 1 49 120 19 89 2.38e-11 62.4
Msa0891980 MtrunA17_Chr5g0412641 52.632 57 27 0 64 120 46 102 2.40e-11 62.4
Msa0891980 MtrunA17_Chr4g0055761 54.386 57 25 1 64 119 145 201 3.69e-11 61.2
Msa0891980 MtrunA17_Chr8g0350701 49.123 57 29 0 64 120 27 83 3.83e-11 61.6
Msa0891980 MtrunA17_Chr7g0253424 50.000 56 28 0 64 119 39 94 4.07e-11 61.2
Msa0891980 MtrunA17_Chr2g0283171 50.877 57 27 1 64 119 63 119 5.79e-11 58.9
Msa0891980 MtrunA17_Chr3g0129421 55.714 70 30 1 64 132 170 239 6.57e-11 61.2
Msa0891980 MtrunA17_Chr1g0183981 50.000 58 28 1 64 120 75 132 7.94e-11 59.7
Msa0891980 MtrunA17_Chr1g0183961 59.649 57 22 1 64 119 27 83 8.34e-11 58.5
Msa0891980 MtrunA17_Chr8g0335311 50.877 57 27 1 64 119 96 152 8.42e-11 59.3
Msa0891980 MtrunA17_Chr7g0261151 47.887 71 33 2 53 119 6 76 8.75e-11 58.2
Msa0891980 MtrunA17_Chr4g0062551 44.068 59 33 0 64 122 53 111 9.02e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891980 AT4G25470.1 55.102 196 73 3 41 228 28 216 2.75e-67 206
Msa0891980 AT4G25480.1 56.186 194 72 3 42 228 29 216 7.01e-64 198
Msa0891980 AT5G51990.1 51.000 200 78 4 41 228 31 222 1.21e-62 195
Msa0891980 AT4G25490.1 56.633 196 68 4 42 228 26 213 1.88e-60 189
Msa0891980 AT1G63030.2 48.980 196 83 3 35 228 1 181 6.44e-59 184
Msa0891980 AT1G63030.1 48.980 196 83 3 35 228 1 181 6.44e-59 184
Msa0891980 AT1G12610.1 66.379 116 39 0 35 150 1 116 2.90e-55 176
Msa0891980 AT5G25810.1 62.791 86 32 0 60 145 32 117 7.91e-34 121
Msa0891980 AT5G11590.1 61.628 86 33 0 60 145 47 132 5.15e-32 117
Msa0891980 AT4G32800.1 51.402 107 46 1 51 151 6 112 6.75e-32 116
Msa0891980 AT2G44940.1 61.290 93 36 0 53 145 89 181 9.36e-32 117
Msa0891980 AT2G35700.1 48.551 138 63 2 59 193 40 172 1.46e-31 114
Msa0891980 AT3G16280.1 60.759 79 31 0 60 138 57 135 2.24e-28 107
Msa0891980 AT4G16750.1 59.259 81 33 0 59 139 35 115 2.78e-28 105
Msa0891980 AT3G16280.2 60.759 79 31 0 60 138 75 153 3.48e-28 107
Msa0891980 AT1G01250.1 50.467 107 50 1 35 138 13 119 4.46e-28 105
Msa0891980 AT2G36450.1 40.104 192 89 6 52 228 3 183 5.34e-27 102
Msa0891980 AT3G60490.1 61.333 75 29 0 64 138 71 145 2.05e-26 103
Msa0891980 AT2G25820.1 61.842 76 29 0 63 138 25 100 2.18e-26 102
Msa0891980 AT5G52020.1 40.113 177 92 5 60 228 61 231 2.48e-25 99.8
Msa0891980 AT1G71450.1 44.068 118 57 1 64 172 24 141 3.75e-22 90.1
Msa0891980 AT2G47520.1 44.330 97 50 1 23 119 13 105 5.41e-21 86.7
Msa0891980 AT1G77200.1 46.218 119 61 2 20 138 2 117 1.34e-19 84.7
Msa0891980 AT1G21910.1 47.826 92 41 1 64 148 50 141 1.73e-19 84.0
Msa0891980 AT4G13620.1 41.860 129 59 4 6 121 164 289 7.04e-19 84.7
Msa0891980 AT3G16770.1 53.846 78 29 1 44 121 66 136 1.61e-18 81.6
Msa0891980 AT1G33760.1 35.673 171 94 3 64 227 20 181 2.10e-18 80.1
Msa0891980 AT1G46768.3 57.143 63 26 1 59 121 27 88 2.33e-18 79.0
Msa0891980 AT1G46768.1 57.143 63 26 1 59 121 27 88 2.71e-18 79.0
Msa0891980 AT1G46768.2 57.143 63 26 1 59 121 27 88 2.71e-18 79.0
Msa0891980 AT1G12630.1 39.791 191 80 7 60 228 15 192 1.46e-17 78.2
Msa0891980 AT4G39780.1 57.377 61 26 0 59 119 88 148 1.72e-17 79.3
Msa0891980 AT5G21960.1 46.429 84 45 0 62 145 5 88 1.97e-17 78.2
Msa0891980 AT1G74930.1 44.186 86 48 0 64 149 21 106 2.34e-17 77.4
Msa0891980 AT1G19210.1 33.544 158 87 2 64 221 12 151 2.40e-17 77.4
Msa0891980 AT1G22190.1 59.322 59 24 0 63 121 82 140 2.93e-17 78.6
Msa0891980 AT3G50260.1 34.646 127 71 3 64 190 21 135 6.39e-17 75.5
Msa0891980 AT2G33710.1 48.750 80 36 1 59 133 65 144 7.46e-17 76.6
Msa0891980 AT2G33710.2 47.561 82 38 1 59 135 65 146 7.50e-17 77.0
Msa0891980 AT4G06746.1 51.613 62 30 0 64 125 36 97 1.16e-16 74.7
Msa0891980 AT4G28140.1 46.914 81 38 1 46 121 120 200 1.35e-16 77.4
Msa0891980 AT2G22200.1 57.627 59 25 0 63 121 70 128 1.67e-16 76.6
Msa0891980 AT4G36900.1 55.000 60 27 0 60 119 26 85 2.97e-16 74.7
Msa0891980 AT1G78080.1 57.627 59 25 0 63 121 151 209 4.06e-16 76.3
Msa0891980 AT2G23340.1 57.143 56 24 0 64 119 28 83 4.91e-16 73.6
Msa0891980 AT5G67190.1 55.357 56 25 0 64 119 21 76 6.20e-16 73.6
Msa0891980 AT2G20880.1 34.586 133 80 2 40 172 165 290 6.93e-16 75.9
Msa0891980 AT3G11020.1 54.545 66 30 0 58 123 72 137 8.73e-16 75.5
Msa0891980 AT3G57600.1 58.929 56 23 0 64 119 28 83 1.01e-15 74.7
Msa0891980 AT1G36060.1 59.649 57 23 0 63 119 142 198 1.17e-15 74.7
Msa0891980 AT5G05410.2 57.627 59 25 0 64 122 79 137 1.25e-15 74.7
Msa0891980 AT5G65130.1 44.211 95 41 2 39 121 74 168 1.29e-15 74.3
Msa0891980 AT5G65130.2 44.211 95 41 2 39 121 76 170 1.47e-15 74.3
Msa0891980 AT5G05410.1 58.929 56 23 0 64 119 79 134 1.75e-15 74.7
Msa0891980 AT5G13330.1 50.685 73 31 2 60 132 37 104 5.60e-15 71.6
Msa0891980 AT1G71520.1 33.333 147 72 5 58 192 8 140 7.15e-15 69.7
Msa0891980 AT3G15210.1 58.929 56 23 0 64 119 25 80 7.89e-15 71.2
Msa0891980 AT5G61890.1 55.000 60 25 1 60 119 88 145 1.71e-14 70.9
Msa0891980 AT5G44210.1 57.143 56 24 0 64 119 33 88 1.74e-14 70.1
Msa0891980 AT1G72360.1 50.000 66 30 1 54 119 18 80 1.91e-14 70.1
Msa0891980 AT3G23230.1 56.140 57 24 1 64 119 20 76 1.92e-14 68.6
Msa0891980 AT5G07580.1 39.370 127 69 4 15 135 58 182 2.33e-14 69.7
Msa0891980 AT3G61630.1 35.211 142 80 3 64 195 105 244 2.57e-14 71.2
Msa0891980 AT4G11140.1 39.785 93 43 2 64 149 87 173 3.64e-14 70.5
Msa0891980 AT5G64750.1 39.394 99 54 2 74 172 195 287 3.67e-14 71.2
Msa0891980 AT1G03800.1 35.294 102 66 0 18 119 7 108 4.09e-14 69.7
Msa0891980 AT1G72360.2 50.000 68 30 2 52 119 68 131 4.32e-14 70.1
Msa0891980 AT1G72360.3 50.000 68 30 2 52 119 66 129 4.44e-14 69.7
Msa0891980 AT1G22810.1 39.785 93 41 2 64 148 14 99 4.96e-14 67.4
Msa0891980 AT4G27950.1 55.357 56 25 0 64 119 118 173 5.10e-14 70.5
Msa0891980 AT5G51190.1 53.846 65 29 1 56 119 64 128 5.43e-14 68.9
Msa0891980 AT5G18450.1 55.172 58 26 0 63 120 33 90 8.90e-14 69.7
Msa0891980 AT5G47230.1 54.688 64 26 2 57 119 151 212 9.67e-14 69.3
Msa0891980 AT1G75490.1 38.835 103 62 1 33 134 10 112 9.99e-14 68.2
Msa0891980 AT5G61600.1 57.377 61 23 2 60 119 86 144 1.28e-13 68.2
Msa0891980 AT5G43410.1 53.333 60 27 1 61 119 12 71 1.63e-13 65.9
Msa0891980 AT2G46310.1 32.576 132 82 3 64 192 99 226 2.12e-13 68.2
Msa0891980 AT1G15360.1 55.357 56 25 0 64 119 7 62 2.98e-13 66.6
Msa0891980 AT1G15360.2 55.357 56 25 0 64 119 7 62 2.98e-13 66.6
Msa0891980 AT5G25390.2 53.571 56 26 0 64 119 7 62 3.78e-13 66.2
Msa0891980 AT4G31060.1 50.000 56 28 0 64 119 27 82 3.89e-13 65.9
Msa0891980 AT5G19790.1 47.436 78 37 2 45 121 5 79 4.21e-13 67.0
Msa0891980 AT5G53290.1 40.909 88 51 1 33 120 95 181 4.80e-13 67.8
Msa0891980 AT3G20310.1 52.459 61 29 0 59 119 22 82 6.56e-13 66.2
Msa0891980 AT5G25190.1 57.143 56 24 0 64 119 8 63 9.10e-13 64.7
Msa0891980 AT4G17490.1 53.125 64 27 2 57 119 132 193 1.27e-12 65.9
Msa0891980 AT1G28360.1 57.143 56 24 0 64 119 12 67 1.34e-12 64.7
Msa0891980 AT1G28370.1 53.571 56 26 0 64 119 20 75 1.37e-12 63.9
Msa0891980 AT4G23750.2 50.877 57 28 0 64 120 122 178 2.48e-12 65.5
Msa0891980 AT4G23750.1 50.877 57 28 0 64 120 122 178 2.48e-12 65.5
Msa0891980 AT1G28370.2 53.571 56 26 0 64 119 58 113 3.06e-12 63.9
Msa0891980 AT1G50640.1 55.357 56 25 0 64 119 28 83 3.06e-12 64.3
Msa0891980 AT2G40340.2 51.786 56 27 0 64 119 14 69 3.83e-12 64.7
Msa0891980 AT2G40340.5 51.786 56 27 0 64 119 14 69 3.83e-12 64.7
Msa0891980 AT2G40340.4 51.786 56 27 0 64 119 14 69 3.83e-12 64.7
Msa0891980 AT1G12890.1 43.590 78 41 1 42 119 2 76 4.66e-12 63.5
Msa0891980 AT5G47220.1 54.386 57 25 1 64 119 117 173 4.67e-12 63.9
Msa0891980 AT1G77640.1 47.778 90 41 2 64 147 43 132 5.06e-12 63.9
Msa0891980 AT2G40340.3 51.786 56 27 0 64 119 72 127 5.38e-12 64.3
Msa0891980 AT2G40340.1 51.786 56 27 0 64 119 72 127 7.23e-12 64.3
Msa0891980 AT2G40340.6 51.786 56 27 0 64 119 79 134 8.40e-12 64.3
Msa0891980 AT5G61590.1 48.276 87 42 2 50 135 95 179 2.40e-11 61.2
Msa0891980 AT2G40350.2 44.444 72 33 1 64 135 74 138 3.33e-11 60.1
Msa0891980 AT4G17500.1 54.386 57 25 1 64 119 148 204 3.52e-11 61.6
Msa0891980 AT2G40350.1 44.444 72 33 1 64 135 67 131 3.93e-11 60.1
Msa0891980 AT3G23240.1 48.276 58 29 1 64 120 82 139 4.18e-11 60.8
Msa0891980 AT1G12980.1 53.571 56 26 0 64 119 57 112 4.94e-11 61.6
Msa0891980 AT5G07310.1 53.125 64 28 1 60 123 90 151 5.29e-11 61.2
Msa0891980 AT1G24590.1 52.632 57 27 0 64 120 58 114 8.74e-11 60.8

Find 69 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTCTCGGTGGAATT+TGG 0.218037 6_1:-69374864 None:intergenic
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6_1:-69374954 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6_1:+69375018 Msa0891980:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6_1:-69375059 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6_1:+69375373 Msa0891980:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6_1:-69375461 None:intergenic
GCCTGAGTGGTGGCAGGTAC+AGG 0.317511 6_1:-69375194 None:intergenic
AGACTCGCCACCCGGTATAT+AGG 0.350439 6_1:+69374988 Msa0891980:CDS
CGGTGGAATTTGGAGAAAAC+TGG 0.366649 6_1:-69374854 None:intergenic
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6_1:+69374887 Msa0891980:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6_1:+69375060 Msa0891980:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6_1:+69375019 Msa0891980:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6_1:+69374965 Msa0891980:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6_1:+69375401 Msa0891980:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6_1:+69375402 Msa0891980:CDS
CGCAGCAACATCATGTGCTC+GGG 0.465490 6_1:-69375114 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6_1:-69374983 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6_1:-69374999 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6_1:+69375322 Msa0891980:CDS
TCGCAGCAACATCATGTGCT+CGG 0.489406 6_1:-69375115 None:intergenic
CCTGAGTGGTGGCAGGTACA+GGG 0.491147 6_1:-69375193 None:intergenic
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6_1:+69374948 Msa0891980:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6_1:+69375232 Msa0891980:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6_1:+69375003 Msa0891980:CDS
CGGGCTGCCATCTCTGCTGT+CGG 0.502616 6_1:-69375095 None:intergenic
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6_1:+69374949 Msa0891980:CDS
TGTTGCTGCGATGGCATTGA+GGG 0.505227 6_1:+69375127 Msa0891980:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6_1:+69375244 Msa0891980:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6_1:+69375471 Msa0891980:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6_1:+69375328 Msa0891980:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6_1:-69375374 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6_1:+69374888 Msa0891980:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6_1:-69375263 None:intergenic
TTGTATGGAAGAGGAAGAAG+AGG 0.527030 6_1:+69375337 Msa0891980:CDS
GGCTATTGCCACCTCTTCTA+CGG 0.529658 6_1:+69375298 Msa0891980:CDS
TGAATTCGCAAATGAACTCT+CGG 0.541132 6_1:-69374874 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6_1:+69375034 Msa0891980:CDS
CCCTGTACCTGCCACCACTC+AGG 0.544765 6_1:+69375193 Msa0891980:CDS
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6_1:+69374879 Msa0891980:CDS
AGAGTCTGCAAAGTTGAGAC+AGG 0.553063 6_1:-69375159 None:intergenic
AGCACATGATGTTGCTGCGA+TGG 0.555409 6_1:+69375118 Msa0891980:CDS
ATGTTGCTGCGATGGCATTG+AGG 0.567345 6_1:+69375126 Msa0891980:CDS
CTTCTACGGAGGAGCAGAGT+AGG 0.569439 6_1:+69375312 Msa0891980:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.571780 6_1:-69374922 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6_1:+69375065 Msa0891980:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6_1:-69374998 None:intergenic
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6_1:+69375033 Msa0891980:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6_1:+69374878 Msa0891980:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.597402 6_1:+69375366 Msa0891980:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6_1:-69375407 None:intergenic
CTGCTCCTCCGTAGAAGAGG+TGG 0.604805 6_1:-69375306 None:intergenic
ACTCTGCTCCTCCGTAGAAG+AGG 0.607637 6_1:-69375309 None:intergenic
CAATTTCCAACGAGGAAGTG+AGG 0.611060 6_1:+69374916 Msa0891980:CDS
TATTGCCACCTCTTCTACGG+AGG 0.628091 6_1:+69375301 Msa0891980:CDS
CAAAGTTGAGACAGGCGTAG+TGG 0.644365 6_1:-69375151 None:intergenic
GTTGCTGCGATGGCATTGAG+GGG 0.648611 6_1:+69375128 Msa0891980:CDS
TCAACTTTGCAGACTCTGCG+TGG 0.652025 6_1:+69375165 Msa0891980:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6_1:+69374997 Msa0891980:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6_1:-69375246 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.673911 6_1:+69375338 Msa0891980:CDS
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6_1:+69374952 Msa0891980:CDS
ATTCGCAAATGAACTCTCGG+TGG 0.692873 6_1:-69374871 None:intergenic
GAATTTGGAGAAAACTGGTG+TGG 0.699539 6_1:-69374849 None:intergenic
GATGACTAATGACATTGACA+CGG 0.709180 6_1:+69375277 Msa0891980:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6_1:+69374889 Msa0891980:CDS
GTATGGAAGAGGAAGAAGAG+GGG 0.733030 6_1:+69375339 Msa0891980:CDS
ACTTTGCAGACTCTGCGTGG+CGG 0.741409 6_1:+69375168 Msa0891980:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6_1:-69374995 None:intergenic
GGGGATGTCAATTTCCAACG+AGG 0.782366 6_1:+69374908 Msa0891980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
GAAGAGGAACTTAGATAAAT+GGG + chr6_1:69375019-69375038 Msa0891980:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6_1:69375062-69375081 None:intergenic 30.0%
CAAACAAGAAGACTAAGATT+TGG + chr6_1:69375060-69375079 Msa0891980:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG + chr6_1:69375214-69375233 Msa0891980:CDS 30.0%
TGAATTCGCAAATGAACTCT+CGG - chr6_1:69374877-69374896 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6_1:69374879-69374898 Msa0891980:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_1:69375018-69375037 Msa0891980:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6_1:69375033-69375052 Msa0891980:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6_1:69375034-69375053 Msa0891980:CDS 35.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6_1:69375065-69375084 Msa0891980:CDS 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6_1:69375210-69375229 None:intergenic 35.0%
GATGACTAATGACATTGACA+CGG + chr6_1:69375277-69375296 Msa0891980:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6_1:69375460-69375479 Msa0891980:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6_1:69375464-69375483 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6_1:69375471-69375490 Msa0891980:CDS 35.0%
GAATTTGGAGAAAACTGGTG+TGG - chr6_1:69374852-69374871 None:intergenic 40.0%
AATGAACTCTCGGTGGAATT+TGG - chr6_1:69374867-69374886 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6_1:69374878-69374897 Msa0891980:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6_1:69375207-69375226 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6_1:69375266-69375285 None:intergenic 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6_1:69375337-69375356 Msa0891980:CDS 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6_1:69375338-69375357 Msa0891980:CDS 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6_1:69375401-69375420 Msa0891980:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6_1:69375402-69375421 Msa0891980:CDS 40.0%
TGATACCCAAAGCTATGTGT+AGG - chr6_1:69375410-69375429 None:intergenic 40.0%
CGGTGGAATTTGGAGAAAAC+TGG - chr6_1:69374857-69374876 None:intergenic 45.0%
ATTCGCAAATGAACTCTCGG+TGG - chr6_1:69374874-69374893 None:intergenic 45.0%
CAATTTCCAACGAGGAAGTG+AGG + chr6_1:69374916-69374935 Msa0891980:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6_1:69375002-69375021 None:intergenic 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6_1:69375003-69375022 Msa0891980:CDS 45.0%
AGAGTCTGCAAAGTTGAGAC+AGG - chr6_1:69375162-69375181 None:intergenic 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6_1:69375223-69375242 Msa0891980:CDS 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6_1:69375328-69375347 Msa0891980:CDS 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6_1:69375339-69375358 Msa0891980:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6_1:69375366-69375385 Msa0891980:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6_1:69375373-69375392 Msa0891980:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6_1:69375377-69375396 None:intergenic 45.0%
GGGGATGTCAATTTCCAACG+AGG + chr6_1:69374908-69374927 Msa0891980:CDS 50.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6_1:69374925-69374944 None:intergenic 50.0%
TCCTCACACCCCTATATACC+GGG - chr6_1:69375001-69375020 None:intergenic 50.0%
! CACTTTTCCGACAGCAGAGA+TGG + chr6_1:69375088-69375107 Msa0891980:CDS 50.0%
TCGCAGCAACATCATGTGCT+CGG - chr6_1:69375118-69375137 None:intergenic 50.0%
AGCACATGATGTTGCTGCGA+TGG + chr6_1:69375118-69375137 Msa0891980:CDS 50.0%
ATGTTGCTGCGATGGCATTG+AGG + chr6_1:69375126-69375145 Msa0891980:CDS 50.0%
! TGTTGCTGCGATGGCATTGA+GGG + chr6_1:69375127-69375146 Msa0891980:CDS 50.0%
CAAAGTTGAGACAGGCGTAG+TGG - chr6_1:69375154-69375173 None:intergenic 50.0%
TCAACTTTGCAGACTCTGCG+TGG + chr6_1:69375165-69375184 Msa0891980:CDS 50.0%
GGCTATTGCCACCTCTTCTA+CGG + chr6_1:69375298-69375317 Msa0891980:CDS 50.0%
TATTGCCACCTCTTCTACGG+AGG + chr6_1:69375301-69375320 Msa0891980:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6_1:69375322-69375341 Msa0891980:CDS 50.0%
TGCGAATTCAGAGGGCTCTC+AGG + chr6_1:69374887-69374906 Msa0891980:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG + chr6_1:69374888-69374907 Msa0891980:CDS 55.0%
CGAATTCAGAGGGCTCTCAG+GGG + chr6_1:69374889-69374908 Msa0891980:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG + chr6_1:69374948-69374967 Msa0891980:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG + chr6_1:69374949-69374968 Msa0891980:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG - chr6_1:69374957-69374976 None:intergenic 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG + chr6_1:69374965-69374984 Msa0891980:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6_1:69374988-69375007 Msa0891980:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6_1:69374989-69375008 Msa0891980:CDS 55.0%
ACTCGCCACCCGGTATATAG+GGG + chr6_1:69374990-69375009 Msa0891980:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6_1:69374998-69375017 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6_1:69374997-69375016 Msa0891980:CDS 55.0%
CGCAGCAACATCATGTGCTC+GGG - chr6_1:69375117-69375136 None:intergenic 55.0%
! GTTGCTGCGATGGCATTGAG+GGG + chr6_1:69375128-69375147 Msa0891980:CDS 55.0%
ACTTTGCAGACTCTGCGTGG+CGG + chr6_1:69375168-69375187 Msa0891980:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6_1:69375203-69375222 None:intergenic 55.0%
ACTCTGCTCCTCCGTAGAAG+AGG - chr6_1:69375312-69375331 None:intergenic 55.0%
CTTCTACGGAGGAGCAGAGT+AGG + chr6_1:69375312-69375331 Msa0891980:CDS 55.0%
! CTCCAAAGAAGCGTGCTGGG+AGG + chr6_1:69374952-69374971 Msa0891980:CDS 60.0%
CCTGAGTGGTGGCAGGTACA+GGG - chr6_1:69375196-69375215 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6_1:69375249-69375268 None:intergenic 60.0%
CTGCTCCTCCGTAGAAGAGG+TGG - chr6_1:69375309-69375328 None:intergenic 60.0%
GTTCCAGGAGACTCGCCACC+CGG + chr6_1:69374980-69374999 Msa0891980:CDS 65.0%
ATACCGGGTGGCGAGTCTCC+TGG - chr6_1:69374986-69375005 None:intergenic 65.0%
CGGGCTGCCATCTCTGCTGT+CGG - chr6_1:69375098-69375117 None:intergenic 65.0%
CCCTGTACCTGCCACCACTC+AGG + chr6_1:69375193-69375212 Msa0891980:CDS 65.0%
GCCTGAGTGGTGGCAGGTAC+AGG - chr6_1:69375197-69375216 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6_1:69375244-69375263 Msa0891980:CDS 65.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6_1:69375232-69375251 Msa0891980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 69374816 69375502 69374816 ID=Msa0891980;Name=Msa0891980
chr6_1 mRNA 69374816 69375502 69374816 ID=Msa0891980-mRNA-1;Parent=Msa0891980;Name=Msa0891980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|228
chr6_1 exon 69374816 69375502 69374816 ID=Msa0891980-mRNA-1:exon:12173;Parent=Msa0891980-mRNA-1
chr6_1 CDS 69374816 69375502 69374816 ID=Msa0891980-mRNA-1:cds;Parent=Msa0891980-mRNA-1
Gene Sequence

>Msa0891980

ATGGATATGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCACCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTTCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCGACAGCAGAGATGGCAGCCCGAGCACATGATGTTGCTGCGATGGCATTGAGGGGCCACTACGCCTGTCTCAACTTTGCAGACTCTGCGTGGCGGCTCCCTGTACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTTCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGACGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA
Protein sequence

>Msa0891980

MDMLTTNNSSYPHQFSPNSTESSFANSEGSQGMSISNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGHYACLNFADSAWRLPVPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATSSTEEQSRTCMEEEEEGTMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY*