AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891970 MtrunA17_Chr6g0473881 87.281 228 23 3 1 223 48 274 1.45e-139 393
Msa0891970 MtrunA17_Chr6g0473781 76.995 213 33 3 26 226 19 227 2.35e-113 323
Msa0891970 MtrunA17_Chr6g0473971 72.727 220 48 5 3 218 1 212 8.07e-107 307
Msa0891970 MtrunA17_Chr6g0473961 74.359 195 43 4 35 226 25 215 9.63e-105 301
Msa0891970 MtrunA17_Chr6g0474001 73.936 188 46 2 34 218 24 211 5.70e-101 293
Msa0891970 MtrunA17_Chr6g0473981 75.000 188 44 2 34 218 24 211 2.54e-99 288
Msa0891970 MtrunA17_Chr6g0473741 74.038 208 46 4 23 226 25 228 2.91e-97 283
Msa0891970 MtrunA17_Chr6g0473931 71.212 198 44 4 37 226 6 198 2.02e-92 269
Msa0891970 MtrunA17_Chr6g0473941 71.014 207 39 4 37 226 6 208 9.69e-91 265
Msa0891970 MtrunA17_Chr6g0473861 54.365 252 53 4 33 226 32 279 7.68e-78 235
Msa0891970 MtrunA17_Chr1g0203861 64.171 187 60 3 42 226 22 203 4.35e-76 228
Msa0891970 MtrunA17_Chr6g0473771 73.913 115 30 0 23 137 2 116 4.28e-58 179
Msa0891970 MtrunA17_Chr5g0398081 45.411 207 88 6 39 226 24 224 1.61e-52 169
Msa0891970 MtrunA17_Chr5g0398091 40.889 225 110 4 19 226 9 227 1.45e-51 166
Msa0891970 MtrunA17_Chr6g0473791 86.517 89 12 0 24 112 17 105 2.38e-51 163
Msa0891970 MtrunA17_Chr5g0398061 40.807 223 108 5 22 226 6 222 3.36e-49 160
Msa0891970 MtrunA17_Chr4g0057231 64.228 123 35 3 21 140 7 123 5.04e-47 152
Msa0891970 MtrunA17_Chr3g0140161 56.250 96 42 0 59 154 38 133 1.25e-32 117
Msa0891970 MtrunA17_Chr7g0265851 60.714 84 33 0 55 138 15 98 4.75e-32 115
Msa0891970 MtrunA17_Chr8g0334801 65.385 78 27 0 61 138 49 126 5.59e-32 115
Msa0891970 MtrunA17_Chr7g0232261 64.198 81 29 0 58 138 55 135 1.61e-31 115
Msa0891970 MtrunA17_Chr7g0275841 63.750 80 29 0 59 138 23 102 5.03e-31 112
Msa0891970 MtrunA17_Chr5g0399441 62.025 79 30 0 60 138 24 102 4.06e-30 110
Msa0891970 MtrunA17_Chr2g0321071 57.778 90 36 2 58 145 41 130 1.18e-29 110
Msa0891970 MtrunA17_Chr8g0340311 53.608 97 44 1 43 138 25 121 5.70e-29 107
Msa0891970 MtrunA17_Chr8g0390091 52.475 101 48 0 54 154 27 127 2.18e-28 107
Msa0891970 MtrunA17_Chr2g0331231 51.485 101 43 2 44 138 15 115 3.43e-28 105
Msa0891970 MtrunA17_Chr6g0486701 58.974 78 32 0 61 138 41 118 1.67e-27 104
Msa0891970 MtrunA17_Chr8g0346741 52.000 100 42 2 42 138 20 116 2.28e-27 102
Msa0891970 MtrunA17_Chr4g0057241 39.884 173 82 6 60 226 11 167 3.49e-27 102
Msa0891970 MtrunA17_Chr4g0055951 58.974 78 32 0 61 138 71 148 1.60e-25 100
Msa0891970 MtrunA17_Chr6g0486711 47.368 114 50 1 42 145 17 130 2.96e-23 93.6
Msa0891970 MtrunA17_Chr1g0146191 59.494 79 32 0 60 138 43 121 4.98e-22 90.9
Msa0891970 MtrunA17_Chr4g0017851 46.392 97 47 1 49 145 108 199 1.12e-21 90.9
Msa0891970 MtrunA17_Chr5g0396191 48.624 109 55 1 64 172 11 118 6.48e-19 81.3
Msa0891970 MtrunA17_Chr5g0396181 45.000 100 53 1 64 161 21 120 7.42e-19 81.3
Msa0891970 MtrunA17_Chr1g0150631 41.053 95 49 1 63 150 37 131 5.07e-18 79.7
Msa0891970 MtrunA17_Chr1g0150671 36.800 125 63 2 63 183 45 157 1.15e-17 79.7
Msa0891970 MtrunA17_Chr2g0295421 37.008 127 78 1 8 134 42 166 1.84e-17 78.6
Msa0891970 MtrunA17_Chr3g0136551 45.349 86 43 1 64 145 65 150 4.41e-17 77.8
Msa0891970 MtrunA17_Chr3g0134161 40.541 111 59 3 64 172 45 150 8.34e-17 75.1
Msa0891970 MtrunA17_Chr1g0203831 39.007 141 73 2 64 192 57 196 1.14e-16 75.5
Msa0891970 MtrunA17_Chr1g0150691 37.383 107 60 1 59 158 17 123 2.43e-16 75.1
Msa0891970 MtrunA17_Chr5g0437671 58.621 58 24 0 64 121 85 142 2.53e-16 77.0
Msa0891970 MtrunA17_Chr1g0196781 42.697 89 45 1 59 147 147 229 5.64e-16 75.5
Msa0891970 MtrunA17_Chr2g0334031 42.222 90 47 1 52 136 105 194 1.02e-15 75.1
Msa0891970 MtrunA17_Chr3g0136541 45.238 84 42 1 66 145 42 125 1.19e-15 73.6
Msa0891970 MtrunA17_Chr7g0221471 53.125 64 29 1 57 119 43 106 1.25e-15 72.0
Msa0891970 MtrunA17_Chr3g0115631 42.105 95 43 2 63 146 149 242 1.31e-15 74.7
Msa0891970 MtrunA17_Chr2g0301191 43.529 85 48 0 63 147 18 102 1.37e-15 72.8
Msa0891970 MtrunA17_Chr8g0382491 46.053 76 38 1 63 135 112 187 1.58e-15 73.9
Msa0891970 MtrunA17_Chr5g0425561 55.932 59 26 0 63 121 172 230 1.65e-15 74.3
Msa0891970 MtrunA17_Chr1g0195151 35.772 123 74 2 11 131 25 144 1.77e-15 73.9
Msa0891970 MtrunA17_Chr1g0150661 40.000 90 47 1 63 145 34 123 1.90e-15 72.4
Msa0891970 MtrunA17_Chr1g0153151 43.333 90 43 1 64 145 44 133 2.06e-15 71.6
Msa0891970 MtrunA17_Chr8g0383591 55.000 60 27 0 64 123 145 204 2.07e-15 73.9
Msa0891970 MtrunA17_Chr1g0179161 31.977 172 70 6 48 196 3 150 2.18e-15 71.2
Msa0891970 MtrunA17_Chr7g0221501 53.125 64 29 1 57 119 43 106 2.65e-15 71.2
Msa0891970 MtrunA17_Chr2g0324131 55.932 59 26 0 63 121 217 275 2.86e-15 73.9
Msa0891970 MtrunA17_Chr8g0375031 55.357 56 25 0 64 119 125 180 4.23e-15 71.6
Msa0891970 MtrunA17_Chr4g0044911 57.143 56 24 0 64 119 96 151 6.71e-15 71.2
Msa0891970 MtrunA17_Chr5g0401871 55.357 56 25 0 64 119 25 80 7.91e-15 70.1
Msa0891970 MtrunA17_Chr1g0158971 44.737 76 37 1 64 139 115 185 1.03e-14 72.0
Msa0891970 MtrunA17_Chr5g0437371 58.929 56 23 0 64 119 66 121 1.22e-14 71.6
Msa0891970 MtrunA17_Chr3g0099871 55.000 60 27 0 60 119 23 82 1.39e-14 70.1
Msa0891970 MtrunA17_Chr2g0323171 57.143 56 24 0 64 119 65 120 1.57e-14 69.3
Msa0891970 MtrunA17_Chr8g0344961 35.849 106 63 2 54 157 114 216 1.74e-14 71.6
Msa0891970 MtrunA17_Chr2g0316931 57.143 56 24 0 64 119 31 86 1.79e-14 69.7
Msa0891970 MtrunA17_Chr2g0301171 39.560 91 55 0 63 153 18 108 1.91e-14 69.3
Msa0891970 MtrunA17_Chr4g0044871 55.357 56 25 0 64 119 96 151 2.01e-14 70.1
Msa0891970 MtrunA17_Chr4g0044881 42.105 95 47 1 25 119 83 169 2.30e-14 70.1
Msa0891970 MtrunA17_Chr4g0044901 55.357 56 25 0 64 119 96 151 2.52e-14 69.7
Msa0891970 MtrunA17_Chr1g0170531 37.500 104 62 2 17 119 44 145 3.08e-14 69.3
Msa0891970 MtrunA17_Chr7g0225131 53.333 60 25 1 63 122 28 84 3.31e-14 66.2
Msa0891970 MtrunA17_Chr1g0189941 49.333 75 38 0 48 122 8 82 4.01e-14 67.8
Msa0891970 MtrunA17_Chr4g0023411 55.357 56 25 0 64 119 65 120 4.96e-14 68.2
Msa0891970 MtrunA17_Chr7g0257911 57.143 56 24 0 64 119 31 86 6.10e-14 69.3
Msa0891970 MtrunA17_Chr1g0186731 56.140 57 24 1 64 119 21 77 7.31e-14 66.6
Msa0891970 MtrunA17_Chr2g0282651 34.454 119 69 3 3 119 14 125 1.05e-13 68.2
Msa0891970 MtrunA17_Chr2g0297331 55.932 59 25 1 64 121 14 72 1.80e-13 65.1
Msa0891970 MtrunA17_Chr2g0283181 47.826 69 35 1 52 119 137 205 2.27e-13 67.8
Msa0891970 MtrunA17_Chr4g0063751 46.479 71 31 1 64 134 7 70 2.33e-13 66.6
Msa0891970 MtrunA17_Chr5g0396911 48.000 75 29 2 51 119 97 167 2.62e-13 67.8
Msa0891970 MtrunA17_Chr3g0126321 39.560 91 46 1 40 130 98 179 3.39e-13 67.8
Msa0891970 MtrunA17_Chr3g0114761 41.667 108 59 2 45 148 6 113 3.47e-13 66.2
Msa0891970 MtrunA17_Chr3g0137174 57.143 56 24 0 64 119 8 63 3.74e-13 65.9
Msa0891970 MtrunA17_Chr4g0055801 42.169 83 47 1 38 119 128 210 3.92e-13 67.4
Msa0891970 MtrunA17_Chr1g0184081 52.632 57 26 1 64 119 21 77 4.53e-13 64.3
Msa0891970 MtrunA17_Chr4g0002631 57.143 56 24 0 64 119 8 63 5.44e-13 65.5
Msa0891970 MtrunA17_Chr4g0003421 53.571 56 26 0 64 119 40 95 5.90e-13 66.2
Msa0891970 MtrunA17_Chr1g0186671 54.386 57 25 1 64 119 19 75 9.35e-13 63.5
Msa0891970 MtrunA17_Chr2g0333011 51.786 56 27 0 64 119 7 62 1.01e-12 64.3
Msa0891970 MtrunA17_Chr2g0282621 55.357 56 25 0 64 119 15 70 1.20e-12 63.9
Msa0891970 MtrunA17_Chr1g0186681 50.820 61 28 1 61 119 16 76 1.72e-12 62.4
Msa0891970 MtrunA17_Chr4g0055781 54.386 57 25 1 64 119 102 158 1.84e-12 64.7
Msa0891970 MtrunA17_Chr2g0301181 38.824 85 52 0 63 147 18 102 2.15e-12 64.3
Msa0891970 MtrunA17_Chr5g0438831 38.679 106 49 3 24 129 15 104 9.38e-12 63.2
Msa0891970 MtrunA17_Chr5g0438801 48.485 66 27 1 64 129 51 109 1.60e-11 62.4
Msa0891970 MtrunA17_Chr8g0387801 38.710 93 51 1 33 119 70 162 2.01e-11 62.4
Msa0891970 MtrunA17_Chr1g0196871 48.387 62 29 2 59 119 13 72 2.20e-11 58.5
Msa0891970 MtrunA17_Chr8g0367911 50.000 56 28 0 64 119 44 99 2.25e-11 62.0
Msa0891970 MtrunA17_Chr5g0432821 45.000 60 33 0 60 119 120 179 2.84e-11 61.6
Msa0891970 MtrunA17_Chr4g0062551 44.068 59 33 0 64 122 53 111 3.20e-11 59.3
Msa0891970 MtrunA17_Chr4g0046161 39.000 100 55 3 26 119 14 113 3.80e-11 58.5
Msa0891970 MtrunA17_Chr6g0453661 38.202 89 47 1 31 119 13 93 5.04e-11 61.6
Msa0891970 MtrunA17_Chr5g0412641 50.877 57 28 0 64 120 46 102 6.44e-11 61.2
Msa0891970 MtrunA17_Chr5g0396171 44.262 61 34 0 66 126 26 86 7.18e-11 57.4
Msa0891970 MtrunA17_Chr8g0335331 49.123 57 28 1 64 119 125 181 7.58e-11 59.7
Msa0891970 MtrunA17_Chr6g0461271 44.444 72 39 1 49 120 19 89 8.68e-11 60.5
Msa0891970 MtrunA17_Chr8g0350701 33.628 113 65 3 64 169 27 136 9.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891970 AT4G25470.1 55.102 196 71 4 41 226 28 216 1.09e-65 202
Msa0891970 AT4G25480.1 53.953 215 78 5 22 226 13 216 2.04e-64 199
Msa0891970 AT5G51990.1 51.000 200 76 4 41 226 31 222 3.36e-62 194
Msa0891970 AT4G25490.1 56.122 196 67 4 42 226 26 213 1.28e-59 187
Msa0891970 AT1G63030.2 50.000 192 81 4 37 226 3 181 3.89e-59 184
Msa0891970 AT1G63030.1 50.000 192 81 4 37 226 3 181 3.89e-59 184
Msa0891970 AT1G12610.1 68.421 114 36 0 37 150 3 116 8.64e-56 177
Msa0891970 AT5G25810.1 60.465 86 34 0 60 145 32 117 1.85e-32 117
Msa0891970 AT5G11590.1 48.780 123 59 1 27 145 10 132 7.20e-32 116
Msa0891970 AT2G35700.1 47.368 133 70 0 59 191 40 172 9.10e-32 115
Msa0891970 AT2G44940.1 53.333 105 49 0 53 157 89 193 1.63e-30 114
Msa0891970 AT4G32800.1 49.533 107 48 1 51 151 6 112 2.02e-30 112
Msa0891970 AT1G01250.1 60.000 80 32 0 59 138 40 119 7.59e-28 105
Msa0891970 AT3G16280.1 59.494 79 32 0 60 138 57 135 8.68e-28 105
Msa0891970 AT4G16750.1 58.025 81 34 0 59 139 35 115 1.41e-27 103
Msa0891970 AT3G16280.2 59.494 79 32 0 60 138 75 153 1.44e-27 105
Msa0891970 AT2G25820.1 60.526 76 30 0 63 138 25 100 1.31e-25 100
Msa0891970 AT2G36450.1 39.474 190 91 6 52 226 3 183 1.52e-25 99.0
Msa0891970 AT3G60490.1 60.000 75 30 0 64 138 71 145 1.62e-25 100
Msa0891970 AT5G52020.1 40.113 177 90 6 60 226 61 231 7.04e-25 98.2
Msa0891970 AT1G71450.1 37.778 135 84 0 64 198 24 158 5.39e-22 89.4
Msa0891970 AT1G77200.1 46.218 119 61 2 20 138 2 117 1.69e-20 87.0
Msa0891970 AT2G47520.1 43.299 97 51 1 23 119 13 105 2.14e-20 85.1
Msa0891970 AT1G33760.1 35.503 169 95 3 64 225 20 181 5.87e-20 84.3
Msa0891970 AT1G21910.1 48.913 92 40 1 64 148 50 141 6.79e-20 85.1
Msa0891970 AT1G12630.1 38.503 187 86 6 60 226 15 192 9.14e-19 81.3
Msa0891970 AT4G13620.1 41.085 129 60 4 6 121 164 289 2.16e-18 83.2
Msa0891970 AT1G46768.3 57.143 63 26 1 59 121 27 88 7.17e-18 77.4
Msa0891970 AT1G46768.1 57.143 63 26 1 59 121 27 88 8.15e-18 77.8
Msa0891970 AT1G46768.2 57.143 63 26 1 59 121 27 88 8.15e-18 77.8
Msa0891970 AT3G16770.1 52.564 78 30 1 44 121 66 136 8.68e-18 79.7
Msa0891970 AT5G21960.1 47.619 84 44 0 62 145 5 88 9.96e-18 79.0
Msa0891970 AT4G39780.1 55.738 61 27 0 59 119 88 148 5.62e-17 77.8
Msa0891970 AT1G22190.1 50.685 73 34 1 49 121 70 140 1.30e-16 76.6
Msa0891970 AT1G74930.1 41.860 86 50 0 64 149 21 106 2.32e-16 74.7
Msa0891970 AT1G19210.1 32.692 156 89 2 64 219 12 151 3.67e-16 73.9
Msa0891970 AT4G06746.1 51.613 62 30 0 64 125 36 97 4.12e-16 73.2
Msa0891970 AT2G22200.1 57.895 57 24 0 63 119 70 126 8.40e-16 74.7
Msa0891970 AT4G36900.1 55.000 60 27 0 60 119 26 85 8.49e-16 73.2
Msa0891970 AT1G78080.1 38.679 106 53 2 63 157 151 255 1.44e-15 74.7
Msa0891970 AT3G50260.1 34.646 127 69 4 64 188 21 135 1.52e-15 71.6
Msa0891970 AT2G23340.1 57.143 56 24 0 64 119 28 83 1.60e-15 72.0
Msa0891970 AT5G67190.1 55.357 56 25 0 64 119 21 76 1.86e-15 72.0
Msa0891970 AT3G11020.1 53.030 66 31 0 58 123 72 137 2.40e-15 73.9
Msa0891970 AT2G20880.1 46.250 80 41 1 40 119 165 242 3.13e-15 73.9
Msa0891970 AT3G61630.1 34.932 146 73 3 64 193 105 244 3.50e-15 73.6
Msa0891970 AT1G36060.1 41.905 105 47 3 63 156 142 243 3.83e-15 73.6
Msa0891970 AT1G71520.1 32.168 143 77 4 58 190 8 140 4.59e-15 70.1
Msa0891970 AT2G33710.1 46.250 80 38 1 59 133 65 144 5.31e-15 71.6
Msa0891970 AT5G65130.2 43.158 95 42 2 39 121 76 170 5.32e-15 72.8
Msa0891970 AT5G65130.1 43.158 95 42 2 39 121 74 168 5.36e-15 72.4
Msa0891970 AT2G33710.2 54.098 61 28 0 59 119 65 125 5.51e-15 72.0
Msa0891970 AT5G05410.2 55.932 59 26 0 64 122 79 137 6.38e-15 72.8
Msa0891970 AT4G28140.1 44.444 81 40 1 46 121 120 200 8.24e-15 72.4
Msa0891970 AT5G05410.1 57.143 56 24 0 64 119 79 134 8.26e-15 72.8
Msa0891970 AT5G13330.1 49.315 73 32 2 60 132 37 104 2.03e-14 70.1
Msa0891970 AT5G07580.1 38.583 127 70 4 15 135 58 182 2.43e-14 69.7
Msa0891970 AT3G15210.1 57.143 56 24 0 64 119 25 80 2.96e-14 69.7
Msa0891970 AT5G61890.1 53.333 60 26 1 60 119 88 145 4.71e-14 69.7
Msa0891970 AT3G57600.1 55.357 56 25 0 64 119 28 83 5.22e-14 69.7
Msa0891970 AT1G72360.1 41.379 87 45 2 54 140 18 98 6.61e-14 68.6
Msa0891970 AT5G44210.1 55.357 56 25 0 64 119 33 88 7.73e-14 68.2
Msa0891970 AT5G61600.1 57.377 61 23 2 60 119 86 144 7.95e-14 68.9
Msa0891970 AT4G31060.1 30.065 153 100 3 64 213 27 175 9.10e-14 67.8
Msa0891970 AT5G47230.1 33.766 154 88 6 57 204 151 296 1.02e-13 69.3
Msa0891970 AT1G72360.3 33.962 106 67 1 35 140 45 147 1.13e-13 68.6
Msa0891970 AT1G72360.2 41.573 89 45 3 52 140 68 149 1.43e-13 68.6
Msa0891970 AT1G15360.1 55.357 56 25 0 64 119 7 62 1.65e-13 67.4
Msa0891970 AT1G15360.2 55.357 56 25 0 64 119 7 62 1.65e-13 67.4
Msa0891970 AT5G51190.1 52.308 65 30 1 56 119 64 128 1.79e-13 67.4
Msa0891970 AT1G22810.1 38.710 93 42 2 64 148 14 99 1.80e-13 65.9
Msa0891970 AT4G11140.1 38.710 93 44 2 64 149 87 173 1.82e-13 68.6
Msa0891970 AT5G64750.1 47.143 70 36 1 74 143 195 263 1.93e-13 68.9
Msa0891970 AT4G27950.1 53.571 56 26 0 64 119 118 173 2.57e-13 68.6
Msa0891970 AT1G03800.1 47.059 68 33 1 52 119 44 108 3.86e-13 67.0
Msa0891970 AT5G43410.1 51.667 60 28 1 61 119 12 71 4.16e-13 64.7
Msa0891970 AT1G75490.1 45.833 72 39 0 63 134 41 112 5.22e-13 65.9
Msa0891970 AT5G19790.1 46.154 78 38 2 45 121 5 79 1.01e-12 65.9
Msa0891970 AT5G25390.2 51.786 56 27 0 64 119 7 62 1.27e-12 64.7
Msa0891970 AT3G23230.1 52.632 57 26 1 64 119 20 76 1.37e-12 63.5
Msa0891970 AT1G77640.1 50.000 90 39 2 64 147 43 132 1.43e-12 65.5
Msa0891970 AT3G20310.1 50.000 62 31 0 58 119 21 82 2.47e-12 64.7
Msa0891970 AT5G53290.1 50.877 57 28 0 64 120 125 181 2.66e-12 65.5
Msa0891970 AT5G25190.1 55.357 56 25 0 64 119 8 63 2.94e-12 63.5
Msa0891970 AT1G28360.1 55.357 56 25 0 64 119 12 67 3.69e-12 63.2
Msa0891970 AT5G18450.1 51.724 58 28 0 63 120 33 90 4.40e-12 64.7
Msa0891970 AT1G28370.1 51.786 56 27 0 64 119 20 75 5.62e-12 62.4
Msa0891970 AT4G17490.1 51.562 64 28 2 57 119 132 193 5.75e-12 63.9
Msa0891970 AT5G61590.1 48.276 87 42 2 50 135 95 179 7.35e-12 62.8
Msa0891970 AT1G28370.2 51.786 56 27 0 64 119 58 113 1.03e-11 62.4
Msa0891970 AT2G40340.2 50.000 56 28 0 64 119 14 69 1.07e-11 63.5
Msa0891970 AT2G40340.5 50.000 56 28 0 64 119 14 69 1.07e-11 63.5
Msa0891970 AT2G40340.4 50.000 56 28 0 64 119 14 69 1.07e-11 63.5
Msa0891970 AT4G23750.2 49.123 57 29 0 64 120 122 178 1.07e-11 63.9
Msa0891970 AT4G23750.1 49.123 57 29 0 64 120 122 178 1.07e-11 63.9
Msa0891970 AT1G12890.1 42.308 78 42 1 42 119 2 76 1.16e-11 62.4
Msa0891970 AT1G50640.1 53.571 56 26 0 64 119 28 83 1.20e-11 62.4
Msa0891970 AT2G40350.2 45.833 72 32 1 64 135 74 138 1.21e-11 61.2
Msa0891970 AT2G40350.1 45.833 72 32 1 64 135 67 131 1.33e-11 61.2
Msa0891970 AT2G40340.3 50.000 56 28 0 64 119 72 127 1.74e-11 62.8
Msa0891970 AT5G47220.1 52.632 57 26 1 64 119 117 173 1.75e-11 62.4
Msa0891970 AT2G40340.1 50.000 56 28 0 64 119 72 127 2.11e-11 62.8
Msa0891970 AT2G40340.6 50.000 56 28 0 64 119 79 134 2.44e-11 62.8
Msa0891970 AT2G46310.1 30.827 133 81 4 64 190 99 226 4.63e-11 61.6
Msa0891970 AT5G07310.1 51.562 64 29 1 60 123 90 151 6.79e-11 60.8

Find 73 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAGGCCGCAGAGGCTTTC+AGG 0.128293 6_1:+69357482 Msa0891970:CDS
AATGAACTCTCGGTGGAATT+TGG 0.218037 6_1:-69357106 None:intergenic
ATGTTGCTTCAATGGCATTA+AGG 0.227810 6_1:+69357368 Msa0891970:CDS
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6_1:-69357196 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6_1:+69357260 Msa0891970:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6_1:-69357301 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6_1:+69357609 Msa0891970:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6_1:-69357697 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6_1:-69357436 None:intergenic
AGACTCGCCACCCGGTATAT+AGG 0.350439 6_1:+69357230 Msa0891970:CDS
CCTGAGTGGTGGCAGGTATA+GGG 0.356312 6_1:-69357435 None:intergenic
CGGTGGAATTTGGAGAAAAC+TGG 0.366649 6_1:-69357096 None:intergenic
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6_1:-69357344 None:intergenic
TGTTGCTTCAATGGCATTAA+GGG 0.407611 6_1:+69357369 Msa0891970:CDS
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6_1:+69357339 Msa0891970:CDS
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6_1:+69357129 Msa0891970:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6_1:+69357302 Msa0891970:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6_1:+69357261 Msa0891970:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6_1:+69357207 Msa0891970:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6_1:+69357637 Msa0891970:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6_1:+69357360 Msa0891970:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6_1:+69357638 Msa0891970:CDS
GCTAACCTCACTTCCTCGTT+GGG 0.459051 6_1:-69357163 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6_1:-69357225 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6_1:-69357241 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6_1:+69357558 Msa0891970:CDS
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6_1:-69357337 None:intergenic
TTAGTCATTGAAGTCTTGTC+CGG 0.492787 6_1:-69357505 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6_1:-69357357 None:intergenic
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6_1:+69357190 Msa0891970:CDS
GGCCGCAGAGGCTTTCAGGC+CGG 0.500487 6_1:+69357486 Msa0891970:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6_1:+69357245 Msa0891970:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.500899 6_1:-69357164 None:intergenic
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6_1:+69357191 Msa0891970:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6_1:+69357707 Msa0891970:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6_1:+69357564 Msa0891970:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6_1:-69357610 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6_1:+69357130 Msa0891970:CDS
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6_1:+69357338 Msa0891970:CDS
TGAATTCGCAAATGAACTCT+CGG 0.541132 6_1:-69357116 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6_1:+69357276 Msa0891970:CDS
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6_1:-69357401 None:intergenic
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6_1:+69357121 Msa0891970:CDS
TTGTATGGAAGAGGAAGAAG+AGG 0.552825 6_1:+69357573 Msa0891970:CDS
CCCTATACCTGCCACCACTC+AGG 0.559517 6_1:+69357435 Msa0891970:CDS
CCACTACGGAGGAGCAGAGT+AGG 0.568284 6_1:+69357548 Msa0891970:CDS
TGAAGCAACATCATGTGCCC+GGG 0.576327 6_1:-69357356 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6_1:+69357307 Msa0891970:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6_1:-69357240 None:intergenic
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6_1:+69357275 Msa0891970:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6_1:+69357120 Msa0891970:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6_1:+69357602 Msa0891970:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6_1:-69357643 None:intergenic
TGACACGGCTATTGCCACTA+CGG 0.604979 6_1:+69357534 Msa0891970:CDS
GTTGCTTCAATGGCATTAAG+GGG 0.609844 6_1:+69357370 Msa0891970:CDS
AGTAGCTGCACAGGCCGCAG+AGG 0.626899 6_1:+69357474 Msa0891970:CDS
CCTACTCTGCTCCTCCGTAG+TGG 0.628033 6_1:-69357548 None:intergenic
CAATTCCCAACGAGGAAGTG+AGG 0.632492 6_1:+69357158 Msa0891970:CDS
TGTATGGAAGAGGAAGAAGA+GGG 0.637572 6_1:+69357574 Msa0891970:CDS
TATGGAAGAGGAAGAAGAGG+GGG 0.662829 6_1:+69357576 Msa0891970:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6_1:+69357239 Msa0891970:CDS
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6_1:+69357407 Msa0891970:CDS
GTCCGGCCTGAAAGCCTCTG+CGG 0.672100 6_1:-69357488 None:intergenic
CACGGCTATTGCCACTACGG+AGG 0.684552 6_1:+69357537 Msa0891970:CDS
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6_1:+69357194 Msa0891970:CDS
ATTCGCAAATGAACTCTCGG+TGG 0.692873 6_1:-69357113 None:intergenic
GAATTTGGAGAAAACTGGTG+TGG 0.699539 6_1:-69357091 None:intergenic
AATGACTAATGATATTGACA+CGG 0.707724 6_1:+69357519 Msa0891970:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6_1:+69357131 Msa0891970:CDS
GTATGGAAGAGGAAGAAGAG+GGG 0.730904 6_1:+69357575 Msa0891970:CDS
AGGTATAGGGAGTCGCCACG+CGG 0.731956 6_1:-69357422 None:intergenic
GGGGATGTCAATTCCCAACG+AGG 0.739386 6_1:+69357150 Msa0891970:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6_1:-69357237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATGACTAATGATATTGACA+CGG + chr6_1:69357519-69357538 Msa0891970:CDS 25.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6_1:69357261-69357280 Msa0891970:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6_1:69357304-69357323 None:intergenic 30.0%
CAAACAAGAAGACTAAGATT+TGG + chr6_1:69357302-69357321 Msa0891970:CDS 30.0%
TGAATTCGCAAATGAACTCT+CGG - chr6_1:69357119-69357138 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6_1:69357121-69357140 Msa0891970:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_1:69357260-69357279 Msa0891970:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6_1:69357275-69357294 Msa0891970:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6_1:69357276-69357295 Msa0891970:CDS 35.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6_1:69357307-69357326 Msa0891970:CDS 35.0%
! ATGTTGCTTCAATGGCATTA+AGG + chr6_1:69357368-69357387 Msa0891970:CDS 35.0%
! TGTTGCTTCAATGGCATTAA+GGG + chr6_1:69357369-69357388 Msa0891970:CDS 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6_1:69357452-69357471 None:intergenic 35.0%
TATACAAAAAGTAGCTGCAC+AGG + chr6_1:69357465-69357484 Msa0891970:CDS 35.0%
! TTAGTCATTGAAGTCTTGTC+CGG - chr6_1:69357508-69357527 None:intergenic 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6_1:69357696-69357715 Msa0891970:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6_1:69357700-69357719 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6_1:69357707-69357726 Msa0891970:CDS 35.0%
GAATTTGGAGAAAACTGGTG+TGG - chr6_1:69357094-69357113 None:intergenic 40.0%
AATGAACTCTCGGTGGAATT+TGG - chr6_1:69357109-69357128 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6_1:69357120-69357139 Msa0891970:CDS 40.0%
GTTGCTTCAATGGCATTAAG+GGG + chr6_1:69357370-69357389 Msa0891970:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6_1:69357449-69357468 None:intergenic 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6_1:69357573-69357592 Msa0891970:CDS 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6_1:69357574-69357593 Msa0891970:CDS 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6_1:69357637-69357656 Msa0891970:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6_1:69357638-69357657 Msa0891970:CDS 40.0%
TGATACCCAAAGCTATGTGT+AGG - chr6_1:69357646-69357665 None:intergenic 40.0%
CGGTGGAATTTGGAGAAAAC+TGG - chr6_1:69357099-69357118 None:intergenic 45.0%
ATTCGCAAATGAACTCTCGG+TGG - chr6_1:69357116-69357135 None:intergenic 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6_1:69357244-69357263 None:intergenic 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6_1:69357245-69357264 Msa0891970:CDS 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6_1:69357360-69357379 None:intergenic 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6_1:69357360-69357379 Msa0891970:CDS 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6_1:69357564-69357583 Msa0891970:CDS 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6_1:69357575-69357594 Msa0891970:CDS 45.0%
TATGGAAGAGGAAGAAGAGG+GGG + chr6_1:69357576-69357595 Msa0891970:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6_1:69357602-69357621 Msa0891970:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6_1:69357609-69357628 Msa0891970:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6_1:69357613-69357632 None:intergenic 45.0%
CAATTCCCAACGAGGAAGTG+AGG + chr6_1:69357158-69357177 Msa0891970:CDS 50.0%
GCTAACCTCACTTCCTCGTT+GGG - chr6_1:69357166-69357185 None:intergenic 50.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6_1:69357167-69357186 None:intergenic 50.0%
TCCTCACACCCCTATATACC+GGG - chr6_1:69357243-69357262 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6_1:69357330-69357349 Msa0891970:CDS 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6_1:69357359-69357378 None:intergenic 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6_1:69357404-69357423 None:intergenic 50.0%
TGACACGGCTATTGCCACTA+CGG + chr6_1:69357534-69357553 Msa0891970:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6_1:69357558-69357577 Msa0891970:CDS 50.0%
TGCGAATTCAGAGGGCTCTC+AGG + chr6_1:69357129-69357148 Msa0891970:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG + chr6_1:69357130-69357149 Msa0891970:CDS 55.0%
CGAATTCAGAGGGCTCTCAG+GGG + chr6_1:69357131-69357150 Msa0891970:CDS 55.0%
GGGGATGTCAATTCCCAACG+AGG + chr6_1:69357150-69357169 Msa0891970:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG + chr6_1:69357190-69357209 Msa0891970:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG + chr6_1:69357191-69357210 Msa0891970:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG - chr6_1:69357199-69357218 None:intergenic 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG + chr6_1:69357207-69357226 Msa0891970:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6_1:69357230-69357249 Msa0891970:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6_1:69357231-69357250 Msa0891970:CDS 55.0%
ACTCGCCACCCGGTATATAG+GGG + chr6_1:69357232-69357251 Msa0891970:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6_1:69357240-69357259 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6_1:69357239-69357258 Msa0891970:CDS 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6_1:69357407-69357426 Msa0891970:CDS 55.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6_1:69357438-69357457 None:intergenic 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6_1:69357445-69357464 None:intergenic 55.0%
! CTCCAAAGAAGCGTGCTGGG+AGG + chr6_1:69357194-69357213 Msa0891970:CDS 60.0%
AGGTATAGGGAGTCGCCACG+CGG - chr6_1:69357425-69357444 None:intergenic 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6_1:69357435-69357454 Msa0891970:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6_1:69357439-69357458 None:intergenic 60.0%
CACGGCTATTGCCACTACGG+AGG + chr6_1:69357537-69357556 Msa0891970:CDS 60.0%
CCTACTCTGCTCCTCCGTAG+TGG - chr6_1:69357551-69357570 None:intergenic 60.0%
CCACTACGGAGGAGCAGAGT+AGG + chr6_1:69357548-69357567 Msa0891970:CDS 60.0%
GTTCCAGGAGACTCGCCACC+CGG + chr6_1:69357222-69357241 Msa0891970:CDS 65.0%
ATACCGGGTGGCGAGTCTCC+TGG - chr6_1:69357228-69357247 None:intergenic 65.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6_1:69357338-69357357 Msa0891970:CDS 65.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6_1:69357339-69357358 Msa0891970:CDS 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6_1:69357347-69357366 None:intergenic 65.0%
AGTAGCTGCACAGGCCGCAG+AGG + chr6_1:69357474-69357493 Msa0891970:CDS 65.0%
CACAGGCCGCAGAGGCTTTC+AGG + chr6_1:69357482-69357501 Msa0891970:CDS 65.0%
GTCCGGCCTGAAAGCCTCTG+CGG - chr6_1:69357491-69357510 None:intergenic 65.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6_1:69357340-69357359 None:intergenic 70.0%
GGCCGCAGAGGCTTTCAGGC+CGG + chr6_1:69357486-69357505 Msa0891970:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 69357058 69357738 69357058 ID=Msa0891970;Name=Msa0891970
chr6_1 mRNA 69357058 69357738 69357058 ID=Msa0891970-mRNA-1;Parent=Msa0891970;Name=Msa0891970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|226
chr6_1 exon 69357058 69357738 69357058 ID=Msa0891970-mRNA-1:exon:12174;Parent=Msa0891970-mRNA-1
chr6_1 CDS 69357058 69357738 69357058 ID=Msa0891970-mRNA-1:cds;Parent=Msa0891970-mRNA-1
Gene Sequence

>Msa0891970

ATGGATATGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCACCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTCCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGACTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGTAGCTGCACAGGCCGCAGAGGCTTTCAGGCCGGACAAGACTTCAATGACTAATGATATTGACACGGCTATTGCCACTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA
Protein sequence

>Msa0891970

MDMLTTNNSSYPHQFSPNSTESSFANSEGSQGMSIPNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPIPATTQAKDIQKVAAQAAEAFRPDKTSMTNDIDTAIATTEEQSRTCMEEEEEGAMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY*