AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0892270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892270 MtrunA17_Chr6g0474321 82.298 322 28 3 1 310 387 691 1.69e-180 514
Msa0892270 MtrunA17_Chr1g0204071 43.260 319 130 14 8 307 352 638 3.64e-48 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892270 AT5G62170.3 32.812 320 178 9 2 303 251 551 2.04e-30 121
Msa0892270 AT5G62170.4 32.812 320 178 9 2 303 251 551 2.04e-30 121
Msa0892270 AT5G62170.2 32.812 320 178 9 2 303 251 551 2.04e-30 121
Msa0892270 AT5G62170.1 32.812 320 178 9 2 303 351 651 2.88e-30 120

Find 53 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGCATGAAACTATTT+TGG 0.178113 6_1:-71294150 Msa0892270:CDS
TACCTGTTTGAGAGGAATTT+TGG 0.210196 6_1:+71295468 None:intergenic
GTTCCTAATGTTCTCTCTAT+TGG 0.211895 6_1:-71295514 Msa0892270:CDS
ATTCTGGTTGGTTAGTTTCT+AGG 0.231792 6_1:+71294648 None:intergenic
TCGAAAATTGTTGTTTGATT+TGG 0.251032 6_1:-71294441 Msa0892270:CDS
TTCCTTCTTGTTTGTACCTT+TGG 0.251316 6_1:+71294738 None:intergenic
TTACGTTGGTGCTTGGTTCT+TGG 0.278732 6_1:+71294699 None:intergenic
TCAGTGATGTACTGAAATTC+TGG 0.322305 6_1:+71294632 None:intergenic
TTCCTAATGTTCTCTCTATT+GGG 0.325463 6_1:-71295513 Msa0892270:CDS
ATGTTTATATCTGATGTCTT+TGG 0.328430 6_1:+71295637 None:intergenic
GTGTGCGAAGTGTGAAGTTT+TGG 0.351331 6_1:-71294285 Msa0892270:CDS
AGCCAAATGGTAGCGATAAA+AGG 0.352290 6_1:-71294391 Msa0892270:CDS
AGAGTGTTGAAAAGAGTTGT+AGG 0.355881 6_1:-71294314 Msa0892270:CDS
TGGGACAAAGTCTTCTCATT+TGG 0.356913 6_1:-71295494 Msa0892270:CDS
TTCTGGTTGGTTAGTTTCTA+GGG 0.378769 6_1:+71294649 None:intergenic
AAATTTGTCTTCTATTACGT+TGG 0.397620 6_1:+71294685 None:intergenic
TTTGATTGAAGGAGAGGACT+TGG 0.400436 6_1:-71294249 Msa0892270:CDS
GACATTGATAATTTGATTGA+AGG 0.407555 6_1:-71294260 Msa0892270:CDS
TGAAGAAGAAAGAGAAGGAT+TGG 0.423291 6_1:-71294204 Msa0892270:CDS
GTCCCAATAGAGAGAACATT+AGG 0.423456 6_1:+71295511 None:intergenic
GTAATAGAAGACAAATTTAA+CGG 0.434091 6_1:-71294680 Msa0892270:CDS
TTTATATCTGATGTCTTTGG+AGG 0.435794 6_1:+71295640 None:intergenic
GAGTGTTGAAAAGAGTTGTA+GGG 0.439820 6_1:-71294313 Msa0892270:CDS
TATCATTAGTACTTTGTTCA+AGG 0.441254 6_1:+71294510 None:intergenic
TTGCGACCAATGGACAATTA+CGG 0.445049 6_1:-71294348 Msa0892270:CDS
TAGTACTTTGTTCAAGGTGG+TGG 0.446332 6_1:+71294516 None:intergenic
CACCAAAATTCCTCTCAAAC+AGG 0.453429 6_1:-71295470 Msa0892270:intron
TCTTCTATTACGTTGGTGCT+TGG 0.460533 6_1:+71294692 None:intergenic
TCAAGGTGGTGGAAGATTGA+TGG 0.479355 6_1:+71294527 None:intergenic
TTGGTTAGTTTCTAGGGTTG+TGG 0.479415 6_1:+71294655 None:intergenic
AGAAAGAGAAGGATTGGTGA+TGG 0.480333 6_1:-71294198 Msa0892270:CDS
ATAGAGAGAACATTAGGAAC+TGG 0.484701 6_1:+71295517 None:intergenic
CTTGCTCTAGAATTTGATGT+TGG 0.496153 6_1:+71295610 None:intergenic
GTTGGTGCTTGGTTCTTGGT+TGG 0.502681 6_1:+71294703 None:intergenic
AGTTTAGTTCAAGATTCAAA+AGG 0.506836 6_1:-71295663 Msa0892270:CDS
AAAACCAACTTGGTCATCGT+TGG 0.524487 6_1:-71294466 Msa0892270:CDS
TGATAATTTGATTGAAGGAG+AGG 0.525016 6_1:-71294255 Msa0892270:CDS
TTAGCTCCGTAATTGTCCAT+TGG 0.531572 6_1:+71294342 None:intergenic
GAAGATGAAGAAGAAAGAGA+AGG 0.544497 6_1:-71294209 Msa0892270:CDS
GGATTGGTGATGGAGATTCA+AGG 0.563109 6_1:-71294188 Msa0892270:CDS
TATCTAGTTGTATGTGCCAA+AGG 0.566420 6_1:-71294754 Msa0892270:CDS
GAAATTAGTACCTGTTTGAG+AGG 0.575253 6_1:+71295460 None:intergenic
GATTGGTGATGGAGATTCAA+GGG 0.583384 6_1:-71294187 Msa0892270:CDS
GATTCCAACGATGACCAAGT+TGG 0.584180 6_1:+71294462 None:intergenic
TGCCAAAGGTACAAACAAGA+AGG 0.589622 6_1:-71294740 Msa0892270:CDS
GAACTGGATTGATGTTGTTG+AGG 0.594213 6_1:+71295533 None:intergenic
CATTAGTACTTTGTTCAAGG+TGG 0.595640 6_1:+71294513 None:intergenic
TTGAGGAGATTGCTTGACAA+TGG 0.599115 6_1:+71295550 None:intergenic
CAAGGTGGTGGAAGATTGAT+GGG 0.600107 6_1:+71294528 None:intergenic
AGGGAACATATTAGACACAT+TGG 0.605305 6_1:-71294168 Msa0892270:CDS
AAAACTTCACACTTCGCACA+CGG 0.609246 6_1:+71294287 None:intergenic
TGATGTACTGAAATTCTGGT+TGG 0.630974 6_1:+71294636 None:intergenic
GGAAGATTGATGGGTCAAGT+AGG 0.639668 6_1:+71294537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAAAATTAAATTAT+GGG + chr6_1:71294434-71294453 None:intergenic 0.0%
!! AAATATATAAAATTAAATTA+TGG + chr6_1:71294435-71294454 None:intergenic 0.0%
!! AATATATAAAATTAAATTAT+GGG + chr6_1:71294434-71294453 None:intergenic 0.0%
!! AAATATATAAAATTAAATTA+TGG + chr6_1:71294435-71294454 None:intergenic 0.0%
!! TATGTAAAACAAAATTAAAA+TGG - chr6_1:71294764-71294783 Msa0892270:intron 10.0%
!! ATGTAAAACAAAATTAAAAT+GGG - chr6_1:71294765-71294784 Msa0892270:intron 10.0%
!!! GTTAATCTTTTTTTTTTTTT+TGG - chr6_1:71294956-71294975 Msa0892270:intron 10.0%
!!! TTTGTTTTTAATGTTTTTTT+TGG + chr6_1:71295047-71295066 None:intergenic 10.0%
!! TATGTAAAACAAAATTAAAA+TGG - chr6_1:71294764-71294783 Msa0892270:intron 10.0%
!! ATGTAAAACAAAATTAAAAT+GGG - chr6_1:71294765-71294784 Msa0892270:intron 10.0%
!!! GTTAATCTTTTTTTTTTTTT+TGG - chr6_1:71294956-71294975 Msa0892270:intron 10.0%
!!! TTTGTTTTTAATGTTTTTTT+TGG + chr6_1:71295047-71295066 None:intergenic 10.0%
!! ATCATTAATAAATGTTACAA+AGG + chr6_1:71294592-71294611 None:intergenic 15.0%
!!! TTTTTTACTAATTTACATGA+TGG + chr6_1:71294931-71294950 None:intergenic 15.0%
!!! AATCTTTTTTTTTTTTTTGG+TGG - chr6_1:71294959-71294978 Msa0892270:intron 15.0%
!!! ATCTTTTTTTTTTTTTTGGT+GGG - chr6_1:71294960-71294979 Msa0892270:intron 15.0%
!! ATCATTAATAAATGTTACAA+AGG + chr6_1:71294592-71294611 None:intergenic 15.0%
!!! TTTTTTACTAATTTACATGA+TGG + chr6_1:71294931-71294950 None:intergenic 15.0%
!!! AATCTTTTTTTTTTTTTTGG+TGG - chr6_1:71294959-71294978 Msa0892270:intron 15.0%
!!! ATCTTTTTTTTTTTTTTGGT+GGG - chr6_1:71294960-71294979 Msa0892270:intron 15.0%
!!! TACTTCTAACCTTTTTTTTT+TGG - chr6_1:71294617-71294636 Msa0892270:CDS 20.0%
!!! TCTTTTTTTTTTTTTTGGTG+GGG - chr6_1:71294961-71294980 Msa0892270:intron 20.0%
!! AAACAACATGAAAATACAAA+TGG + chr6_1:71295023-71295042 None:intergenic 20.0%
!! GTAATAGAAGACAAATTTAA+CGG - chr6_1:71295189-71295208 Msa0892270:intron 20.0%
!!! AAAATGTGTCTTTTAACAAA+TGG - chr6_1:71295295-71295314 Msa0892270:intron 20.0%
!!! TACTTCTAACCTTTTTTTTT+TGG - chr6_1:71294617-71294636 Msa0892270:CDS 20.0%
!!! TCTTTTTTTTTTTTTTGGTG+GGG - chr6_1:71294961-71294980 Msa0892270:intron 20.0%
!! AAACAACATGAAAATACAAA+TGG + chr6_1:71295023-71295042 None:intergenic 20.0%
!! GTAATAGAAGACAAATTTAA+CGG - chr6_1:71295189-71295208 Msa0892270:intron 20.0%
!!! AAAATGTGTCTTTTAACAAA+TGG - chr6_1:71295295-71295314 Msa0892270:intron 20.0%
!! TCTTGAACTAAACTTTTCAT+TGG + chr6_1:71294200-71294219 None:intergenic 25.0%
!! AGTTTAGTTCAAGATTCAAA+AGG - chr6_1:71294206-71294225 Msa0892270:CDS 25.0%
! ATGTTTATATCTGATGTCTT+TGG + chr6_1:71294235-71294254 None:intergenic 25.0%
!!! TTCTAACCTTTTTTTTTTGG+TGG - chr6_1:71294620-71294639 Msa0892270:CDS 25.0%
! GACAATGCATAAAATATGTA+AGG + chr6_1:71294668-71294687 None:intergenic 25.0%
! GCACACTGTTAAAATTAAAA+TGG + chr6_1:71294819-71294838 None:intergenic 25.0%
!!! GAAAATATTAAGTAGTGGAT+AGG + chr6_1:71294861-71294880 None:intergenic 25.0%
! CTACAGAAAATATTAAGTAG+TGG + chr6_1:71294866-71294885 None:intergenic 25.0%
! TTAAAAACAAAAACAGTCAC+AGG - chr6_1:71295056-71295075 Msa0892270:intron 25.0%
! AAATTTGTCTTCTATTACGT+TGG + chr6_1:71295187-71295206 None:intergenic 25.0%
! TATCATTAGTACTTTGTTCA+AGG + chr6_1:71295362-71295381 None:intergenic 25.0%
!!! TCGAAAATTGTTGTTTGATT+TGG - chr6_1:71295428-71295447 Msa0892270:intron 25.0%
!!! CGATAAAAGGTTATGTTTTT+TGG - chr6_1:71295491-71295510 Msa0892270:CDS 25.0%
!!! AAAAGGTTATGTTTTTTGGA+TGG - chr6_1:71295495-71295514 Msa0892270:CDS 25.0%
!!! AAAGGTTATGTTTTTTGGAT+GGG - chr6_1:71295496-71295515 Msa0892270:CDS 25.0%
!! GACATTGATAATTTGATTGA+AGG - chr6_1:71295609-71295628 Msa0892270:CDS 25.0%
!! TCTTGAACTAAACTTTTCAT+TGG + chr6_1:71294200-71294219 None:intergenic 25.0%
!! AGTTTAGTTCAAGATTCAAA+AGG - chr6_1:71294206-71294225 Msa0892270:CDS 25.0%
! ATGTTTATATCTGATGTCTT+TGG + chr6_1:71294235-71294254 None:intergenic 25.0%
!!! TTCTAACCTTTTTTTTTTGG+TGG - chr6_1:71294620-71294639 Msa0892270:CDS 25.0%
! GACAATGCATAAAATATGTA+AGG + chr6_1:71294668-71294687 None:intergenic 25.0%
! GCACACTGTTAAAATTAAAA+TGG + chr6_1:71294819-71294838 None:intergenic 25.0%
!!! GAAAATATTAAGTAGTGGAT+AGG + chr6_1:71294861-71294880 None:intergenic 25.0%
! CTACAGAAAATATTAAGTAG+TGG + chr6_1:71294866-71294885 None:intergenic 25.0%
! TTAAAAACAAAAACAGTCAC+AGG - chr6_1:71295056-71295075 Msa0892270:intron 25.0%
! AAATTTGTCTTCTATTACGT+TGG + chr6_1:71295187-71295206 None:intergenic 25.0%
! TATCATTAGTACTTTGTTCA+AGG + chr6_1:71295362-71295381 None:intergenic 25.0%
!!! TCGAAAATTGTTGTTTGATT+TGG - chr6_1:71295428-71295447 Msa0892270:intron 25.0%
!!! CGATAAAAGGTTATGTTTTT+TGG - chr6_1:71295491-71295510 Msa0892270:CDS 25.0%
!!! AAAAGGTTATGTTTTTTGGA+TGG - chr6_1:71295495-71295514 Msa0892270:CDS 25.0%
!!! AAAGGTTATGTTTTTTGGAT+GGG - chr6_1:71295496-71295515 Msa0892270:CDS 25.0%
!! GACATTGATAATTTGATTGA+AGG - chr6_1:71295609-71295628 Msa0892270:CDS 25.0%
TTTATATCTGATGTCTTTGG+AGG + chr6_1:71294232-71294251 None:intergenic 30.0%
TTCCTAATGTTCTCTCTATT+GGG - chr6_1:71294356-71294375 Msa0892270:CDS 30.0%
TAATACCCTCATCTTCATAT+GGG - chr6_1:71294500-71294519 Msa0892270:CDS 30.0%
!!! TAACCTTTTTTTTTTGGTGG+TGG - chr6_1:71294623-71294642 Msa0892270:CDS 30.0%
TGCATAAAATATGTAAGGTC+CGG + chr6_1:71294663-71294682 None:intergenic 30.0%
!! AGGCTTTGATTTTGTTATGT+AGG + chr6_1:71294841-71294860 None:intergenic 30.0%
ACAAATGGTTAGAAAAAGCA+AGG + chr6_1:71295008-71295027 None:intergenic 30.0%
TTTACGAGAAAAAACCAACT+TGG - chr6_1:71295393-71295412 Msa0892270:intron 30.0%
!!! ATTGAGATTTTGAAGCCAAA+TGG - chr6_1:71295465-71295484 Msa0892270:intron 30.0%
TGATAATTTGATTGAAGGAG+AGG - chr6_1:71295614-71295633 Msa0892270:CDS 30.0%
! ATTGGTGCATGAAACTATTT+TGG - chr6_1:71295719-71295738 Msa0892270:CDS 30.0%
TTTATATCTGATGTCTTTGG+AGG + chr6_1:71294232-71294251 None:intergenic 30.0%
TTCCTAATGTTCTCTCTATT+GGG - chr6_1:71294356-71294375 Msa0892270:CDS 30.0%
TAATACCCTCATCTTCATAT+GGG - chr6_1:71294500-71294519 Msa0892270:CDS 30.0%
!!! TAACCTTTTTTTTTTGGTGG+TGG - chr6_1:71294623-71294642 Msa0892270:CDS 30.0%
TGCATAAAATATGTAAGGTC+CGG + chr6_1:71294663-71294682 None:intergenic 30.0%
!! AGGCTTTGATTTTGTTATGT+AGG + chr6_1:71294841-71294860 None:intergenic 30.0%
ACAAATGGTTAGAAAAAGCA+AGG + chr6_1:71295008-71295027 None:intergenic 30.0%
TTTACGAGAAAAAACCAACT+TGG - chr6_1:71295393-71295412 Msa0892270:intron 30.0%
!!! ATTGAGATTTTGAAGCCAAA+TGG - chr6_1:71295465-71295484 Msa0892270:intron 30.0%
TGATAATTTGATTGAAGGAG+AGG - chr6_1:71295614-71295633 Msa0892270:CDS 30.0%
! ATTGGTGCATGAAACTATTT+TGG - chr6_1:71295719-71295738 Msa0892270:CDS 30.0%
!! CTTGCTCTAGAATTTGATGT+TGG + chr6_1:71294262-71294281 None:intergenic 35.0%
ATAGAGAGAACATTAGGAAC+TGG + chr6_1:71294355-71294374 None:intergenic 35.0%
GTTCCTAATGTTCTCTCTAT+TGG - chr6_1:71294355-71294374 Msa0892270:CDS 35.0%
! TACCTGTTTGAGAGGAATTT+TGG + chr6_1:71294404-71294423 None:intergenic 35.0%
GAAATTAGTACCTGTTTGAG+AGG + chr6_1:71294412-71294431 None:intergenic 35.0%
CTAATACCCTCATCTTCATA+TGG - chr6_1:71294499-71294518 Msa0892270:CDS 35.0%
CAAATCCCATATGAAGATGA+GGG + chr6_1:71294508-71294527 None:intergenic 35.0%
ACAAATCCCATATGAAGATG+AGG + chr6_1:71294509-71294528 None:intergenic 35.0%
CATAAAATATGTAAGGTCCG+GGG + chr6_1:71294661-71294680 None:intergenic 35.0%
GCATAAAATATGTAAGGTCC+GGG + chr6_1:71294662-71294681 None:intergenic 35.0%
GTTTGTACTTGTACATGCAA+TGG + chr6_1:71294897-71294916 None:intergenic 35.0%
TATCTAGTTGTATGTGCCAA+AGG - chr6_1:71295115-71295134 Msa0892270:intron 35.0%
! TTCCTTCTTGTTTGTACCTT+TGG + chr6_1:71295134-71295153 None:intergenic 35.0%
!! TTCTGGTTGGTTAGTTTCTA+GGG + chr6_1:71295223-71295242 None:intergenic 35.0%
!! ATTCTGGTTGGTTAGTTTCT+AGG + chr6_1:71295224-71295243 None:intergenic 35.0%
TGATGTACTGAAATTCTGGT+TGG + chr6_1:71295236-71295255 None:intergenic 35.0%
TCAGTGATGTACTGAAATTC+TGG + chr6_1:71295240-71295259 None:intergenic 35.0%
CATTAGTACTTTGTTCAAGG+TGG + chr6_1:71295359-71295378 None:intergenic 35.0%
! AACCTTTTATCGCTACCATT+TGG + chr6_1:71295483-71295502 None:intergenic 35.0%
!! AGAGTGTTGAAAAGAGTTGT+AGG - chr6_1:71295555-71295574 Msa0892270:CDS 35.0%
!! GAGTGTTGAAAAGAGTTGTA+GGG - chr6_1:71295556-71295575 Msa0892270:CDS 35.0%
GAAGATGAAGAAGAAAGAGA+AGG - chr6_1:71295660-71295679 Msa0892270:CDS 35.0%
TGAAGAAGAAAGAGAAGGAT+TGG - chr6_1:71295665-71295684 Msa0892270:CDS 35.0%
AGGGAACATATTAGACACAT+TGG - chr6_1:71295701-71295720 Msa0892270:CDS 35.0%
!! CTTGCTCTAGAATTTGATGT+TGG + chr6_1:71294262-71294281 None:intergenic 35.0%
ATAGAGAGAACATTAGGAAC+TGG + chr6_1:71294355-71294374 None:intergenic 35.0%
GTTCCTAATGTTCTCTCTAT+TGG - chr6_1:71294355-71294374 Msa0892270:CDS 35.0%
! TACCTGTTTGAGAGGAATTT+TGG + chr6_1:71294404-71294423 None:intergenic 35.0%
GAAATTAGTACCTGTTTGAG+AGG + chr6_1:71294412-71294431 None:intergenic 35.0%
CTAATACCCTCATCTTCATA+TGG - chr6_1:71294499-71294518 Msa0892270:CDS 35.0%
CAAATCCCATATGAAGATGA+GGG + chr6_1:71294508-71294527 None:intergenic 35.0%
ACAAATCCCATATGAAGATG+AGG + chr6_1:71294509-71294528 None:intergenic 35.0%
CATAAAATATGTAAGGTCCG+GGG + chr6_1:71294661-71294680 None:intergenic 35.0%
GCATAAAATATGTAAGGTCC+GGG + chr6_1:71294662-71294681 None:intergenic 35.0%
GTTTGTACTTGTACATGCAA+TGG + chr6_1:71294897-71294916 None:intergenic 35.0%
TATCTAGTTGTATGTGCCAA+AGG - chr6_1:71295115-71295134 Msa0892270:intron 35.0%
! TTCCTTCTTGTTTGTACCTT+TGG + chr6_1:71295134-71295153 None:intergenic 35.0%
!! TTCTGGTTGGTTAGTTTCTA+GGG + chr6_1:71295223-71295242 None:intergenic 35.0%
!! ATTCTGGTTGGTTAGTTTCT+AGG + chr6_1:71295224-71295243 None:intergenic 35.0%
TGATGTACTGAAATTCTGGT+TGG + chr6_1:71295236-71295255 None:intergenic 35.0%
TCAGTGATGTACTGAAATTC+TGG + chr6_1:71295240-71295259 None:intergenic 35.0%
CATTAGTACTTTGTTCAAGG+TGG + chr6_1:71295359-71295378 None:intergenic 35.0%
! AACCTTTTATCGCTACCATT+TGG + chr6_1:71295483-71295502 None:intergenic 35.0%
!! AGAGTGTTGAAAAGAGTTGT+AGG - chr6_1:71295555-71295574 Msa0892270:CDS 35.0%
!! GAGTGTTGAAAAGAGTTGTA+GGG - chr6_1:71295556-71295575 Msa0892270:CDS 35.0%
GAAGATGAAGAAGAAAGAGA+AGG - chr6_1:71295660-71295679 Msa0892270:CDS 35.0%
TGAAGAAGAAAGAGAAGGAT+TGG - chr6_1:71295665-71295684 Msa0892270:CDS 35.0%
AGGGAACATATTAGACACAT+TGG - chr6_1:71295701-71295720 Msa0892270:CDS 35.0%
TTGAGGAGATTGCTTGACAA+TGG + chr6_1:71294322-71294341 None:intergenic 40.0%
GAACTGGATTGATGTTGTTG+AGG + chr6_1:71294339-71294358 None:intergenic 40.0%
GTCCCAATAGAGAGAACATT+AGG + chr6_1:71294361-71294380 None:intergenic 40.0%
TGGGACAAAGTCTTCTCATT+TGG - chr6_1:71294375-71294394 Msa0892270:CDS 40.0%
! CTGTTTGAGAGGAATTTTGG+TGG + chr6_1:71294401-71294420 None:intergenic 40.0%
CACCAAAATTCCTCTCAAAC+AGG - chr6_1:71294399-71294418 Msa0892270:CDS 40.0%
!!! CTTTTTTTTTTGGTGGTGGC+CGG - chr6_1:71294627-71294646 Msa0892270:CDS 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr6_1:71294628-71294647 Msa0892270:CDS 40.0%
AGATAACTGTGAGCAGAGTT+TGG + chr6_1:71295100-71295119 None:intergenic 40.0%
! TGCCAAAGGTACAAACAAGA+AGG - chr6_1:71295129-71295148 Msa0892270:intron 40.0%
! TCTTCTATTACGTTGGTGCT+TGG + chr6_1:71295180-71295199 None:intergenic 40.0%
!! TTGGTTAGTTTCTAGGGTTG+TGG + chr6_1:71295217-71295236 None:intergenic 40.0%
TAGTACTTTGTTCAAGGTGG+TGG + chr6_1:71295356-71295375 None:intergenic 40.0%
AAAACCAACTTGGTCATCGT+TGG - chr6_1:71295403-71295422 Msa0892270:intron 40.0%
! AGCCAAATGGTAGCGATAAA+AGG - chr6_1:71295478-71295497 Msa0892270:CDS 40.0%
TTGCGACCAATGGACAATTA+CGG - chr6_1:71295521-71295540 Msa0892270:CDS 40.0%
TTAGCTCCGTAATTGTCCAT+TGG + chr6_1:71295530-71295549 None:intergenic 40.0%
AAAACTTCACACTTCGCACA+CGG + chr6_1:71295585-71295604 None:intergenic 40.0%
TTTGATTGAAGGAGAGGACT+TGG - chr6_1:71295620-71295639 Msa0892270:CDS 40.0%
! AGAAAGAGAAGGATTGGTGA+TGG - chr6_1:71295671-71295690 Msa0892270:CDS 40.0%
!! GATTGGTGATGGAGATTCAA+GGG - chr6_1:71295682-71295701 Msa0892270:CDS 40.0%
TTGAGGAGATTGCTTGACAA+TGG + chr6_1:71294322-71294341 None:intergenic 40.0%
GAACTGGATTGATGTTGTTG+AGG + chr6_1:71294339-71294358 None:intergenic 40.0%
GTCCCAATAGAGAGAACATT+AGG + chr6_1:71294361-71294380 None:intergenic 40.0%
TGGGACAAAGTCTTCTCATT+TGG - chr6_1:71294375-71294394 Msa0892270:CDS 40.0%
! CTGTTTGAGAGGAATTTTGG+TGG + chr6_1:71294401-71294420 None:intergenic 40.0%
CACCAAAATTCCTCTCAAAC+AGG - chr6_1:71294399-71294418 Msa0892270:CDS 40.0%
!!! CTTTTTTTTTTGGTGGTGGC+CGG - chr6_1:71294627-71294646 Msa0892270:CDS 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr6_1:71294628-71294647 Msa0892270:CDS 40.0%
AGATAACTGTGAGCAGAGTT+TGG + chr6_1:71295100-71295119 None:intergenic 40.0%
! TGCCAAAGGTACAAACAAGA+AGG - chr6_1:71295129-71295148 Msa0892270:intron 40.0%
! TCTTCTATTACGTTGGTGCT+TGG + chr6_1:71295180-71295199 None:intergenic 40.0%
!! TTGGTTAGTTTCTAGGGTTG+TGG + chr6_1:71295217-71295236 None:intergenic 40.0%
TAGTACTTTGTTCAAGGTGG+TGG + chr6_1:71295356-71295375 None:intergenic 40.0%
AAAACCAACTTGGTCATCGT+TGG - chr6_1:71295403-71295422 Msa0892270:intron 40.0%
! AGCCAAATGGTAGCGATAAA+AGG - chr6_1:71295478-71295497 Msa0892270:CDS 40.0%
TTGCGACCAATGGACAATTA+CGG - chr6_1:71295521-71295540 Msa0892270:CDS 40.0%
TTAGCTCCGTAATTGTCCAT+TGG + chr6_1:71295530-71295549 None:intergenic 40.0%
AAAACTTCACACTTCGCACA+CGG + chr6_1:71295585-71295604 None:intergenic 40.0%
TTTGATTGAAGGAGAGGACT+TGG - chr6_1:71295620-71295639 Msa0892270:CDS 40.0%
! AGAAAGAGAAGGATTGGTGA+TGG - chr6_1:71295671-71295690 Msa0892270:CDS 40.0%
!! GATTGGTGATGGAGATTCAA+GGG - chr6_1:71295682-71295701 Msa0892270:CDS 40.0%
CGGCCACCACCAAAAAAAAA+AGG + chr6_1:71294629-71294648 None:intergenic 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr6_1:71294629-71294648 Msa0892270:CDS 45.0%
! TGAGCTTCGTTCAGTTGGTA+TGG + chr6_1:71294690-71294709 None:intergenic 45.0%
! TTACGTTGGTGCTTGGTTCT+TGG + chr6_1:71295173-71295192 None:intergenic 45.0%
! GGAAGATTGATGGGTCAAGT+AGG + chr6_1:71295335-71295354 None:intergenic 45.0%
!! CAAGGTGGTGGAAGATTGAT+GGG + chr6_1:71295344-71295363 None:intergenic 45.0%
!! TCAAGGTGGTGGAAGATTGA+TGG + chr6_1:71295345-71295364 None:intergenic 45.0%
GATTCCAACGATGACCAAGT+TGG + chr6_1:71295410-71295429 None:intergenic 45.0%
! GTGTGCGAAGTGTGAAGTTT+TGG - chr6_1:71295584-71295603 Msa0892270:CDS 45.0%
!! GGATTGGTGATGGAGATTCA+AGG - chr6_1:71295681-71295700 Msa0892270:CDS 45.0%
CGGCCACCACCAAAAAAAAA+AGG + chr6_1:71294629-71294648 None:intergenic 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr6_1:71294629-71294648 Msa0892270:CDS 45.0%
! TGAGCTTCGTTCAGTTGGTA+TGG + chr6_1:71294690-71294709 None:intergenic 45.0%
! TTACGTTGGTGCTTGGTTCT+TGG + chr6_1:71295173-71295192 None:intergenic 45.0%
! GGAAGATTGATGGGTCAAGT+AGG + chr6_1:71295335-71295354 None:intergenic 45.0%
!! CAAGGTGGTGGAAGATTGAT+GGG + chr6_1:71295344-71295363 None:intergenic 45.0%
!! TCAAGGTGGTGGAAGATTGA+TGG + chr6_1:71295345-71295364 None:intergenic 45.0%
GATTCCAACGATGACCAAGT+TGG + chr6_1:71295410-71295429 None:intergenic 45.0%
! GTGTGCGAAGTGTGAAGTTT+TGG - chr6_1:71295584-71295603 Msa0892270:CDS 45.0%
!! GGATTGGTGATGGAGATTCA+AGG - chr6_1:71295681-71295700 Msa0892270:CDS 45.0%
! GTTGGTGCTTGGTTCTTGGT+TGG + chr6_1:71295169-71295188 None:intergenic 50.0%
!! TGGATGGGTTTTGCGACCAA+TGG - chr6_1:71295511-71295530 Msa0892270:CDS 50.0%
! GTTGGTGCTTGGTTCTTGGT+TGG + chr6_1:71295169-71295188 None:intergenic 50.0%
!! TGGATGGGTTTTGCGACCAA+TGG - chr6_1:71295511-71295530 Msa0892270:CDS 50.0%
CCTCGTGAGCTTCGTTCAGT+TGG + chr6_1:71294695-71294714 None:intergenic 55.0%
CCAACTGAACGAAGCTCACG+AGG - chr6_1:71294692-71294711 Msa0892270:CDS 55.0%
CCTCGTGAGCTTCGTTCAGT+TGG + chr6_1:71294695-71294714 None:intergenic 55.0%
CCAACTGAACGAAGCTCACG+AGG - chr6_1:71294692-71294711 Msa0892270:CDS 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr6_1:71294649-71294668 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr6_1:71294649-71294668 None:intergenic 60.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr6_1:71294641-71294660 Msa0892270:CDS 70.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr6_1:71294641-71294660 Msa0892270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 71294133 71295758 71294133 ID=Msa0892270;Name=Msa0892270
chr6_1 mRNA 71294133 71295758 71294133 ID=Msa0892270-mRNA-1;Parent=Msa0892270;Name=Msa0892270-mRNA-1;_AED=0.10;_eAED=0.72;_QI=0|0|0|1|1|1|2|0|310
chr6_1 exon 71294133 71294777 71294133 ID=Msa0892270-mRNA-1:exon:12317;Parent=Msa0892270-mRNA-1
chr6_1 exon 71295471 71295758 71295471 ID=Msa0892270-mRNA-1:exon:12316;Parent=Msa0892270-mRNA-1
chr6_1 CDS 71295471 71295758 71295471 ID=Msa0892270-mRNA-1:cds;Parent=Msa0892270-mRNA-1
chr6_1 CDS 71294133 71294777 71294133 ID=Msa0892270-mRNA-1:cds;Parent=Msa0892270-mRNA-1
Gene Sequence

>Msa0892270

TTTACATTGAAAGAAGAGCAAGAATCAAGTGACAAGAAATTAGTGTCAAAATGTAAGAAAGATGCCAATGAAAAGTTTAGTTCAAGATTCAAAAGGCCTCCAAAGACATCAGATATAAACATTCGTCCAACATCAAATTCTAGAGCAAGTGACATCAAAAGTAATACAAAAAGCAAGAGAATTCAACCATTGTCAAGCAATCTCCTCAACAACATCAATCCAGTTCCTAATGTTCTCTCTATTGGGACAAAGTCTTCTCATTTGGCCACCAAAATTCCTCTCAAACAGTTATCTAGTTGTATGTGCCAAAGGTACAAACAAGAAGGAACAGTGACACTCTCCAACCAAGAACCAAGCACCAACGTAATAGAAGACAAATTTAACGGTGCCACAACCCTAGAAACTAACCAACCAGAATTTCAGTACATCACTGAAATCTTAAACAAACATTGCACAATCACAACAACAAAAAATGTGTCTTTTAACAAATGGTTCTCTTCAACACACCTACTTGACCCATCAATCTTCCACCACCTTGAACAAAGTACTAATGATAATGATCGAAATTTTACGAGAAAAAACCAACTTGGTCATCGTTGGAATCGAAAATTGTTGTTTGATTTGGTCGATGAAGTTTTAATTGAGATTTTGAAGCCAAATGGTAGCGATAAAAGGTTATGTTTTTTGGATGGGTTTTGCGACCAATGGACAATTACGGAGCTAACAGAGAGAGTGTTGAAAAGAGTTGTAGGGTTTCCGTGTGCGAAGTGTGAAGTTTTGGATGACATTGATAATTTGATTGAAGGAGAGGACTTGGAGAAATTGATCAAAGTTGAAGATGAAGAAGAAAGAGAAGGATTGGTGATGGAGATTCAAGGGAACATATTAGACACATTGGTGCATGAAACTATTTTGGTTATGAGTATGATTTAA

Protein sequence

>Msa0892270

FTLKEEQESSDKKLVSKCKKDANEKFSSRFKRPPKTSDINIRPTSNSRASDIKSNTKSKRIQPLSSNLLNNINPVPNVLSIGTKSSHLATKIPLKQLSSCMCQRYKQEGTVTLSNQEPSTNVIEDKFNGATTLETNQPEFQYITEILNKHCTITTTKNVSFNKWFSSTHLLDPSIFHHLEQSTNDNDRNFTRKNQLGHRWNRKLLFDLVDEVLIEILKPNGSDKRLCFLDGFCDQWTITELTERVLKRVVGFPCAKCEVLDDIDNLIEGEDLEKLIKVEDEEEREGLVMEIQGNILDTLVHETILVMSMI*