Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892270 | XP_003620728.2 | 82.298 | 322 | 28 | 3 | 1 | 310 | 387 | 691 | 1.84e-176 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892270 | G7KQF2 | 82.298 | 322 | 28 | 3 | 1 | 310 | 387 | 691 | 8.79e-177 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0157290 | Msa0892270 | 0.800017 | 1.755638e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892270 | MtrunA17_Chr6g0474321 | 82.298 | 322 | 28 | 3 | 1 | 310 | 387 | 691 | 1.69e-180 | 514 |
| Msa0892270 | MtrunA17_Chr1g0204071 | 43.260 | 319 | 130 | 14 | 8 | 307 | 352 | 638 | 3.64e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892270 | AT5G62170.3 | 32.812 | 320 | 178 | 9 | 2 | 303 | 251 | 551 | 2.04e-30 | 121 |
| Msa0892270 | AT5G62170.4 | 32.812 | 320 | 178 | 9 | 2 | 303 | 251 | 551 | 2.04e-30 | 121 |
| Msa0892270 | AT5G62170.2 | 32.812 | 320 | 178 | 9 | 2 | 303 | 251 | 551 | 2.04e-30 | 121 |
| Msa0892270 | AT5G62170.1 | 32.812 | 320 | 178 | 9 | 2 | 303 | 351 | 651 | 2.88e-30 | 120 |
Find 53 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTGCATGAAACTATTT+TGG | 0.178113 | 6_1:-71294150 | Msa0892270:CDS |
| TACCTGTTTGAGAGGAATTT+TGG | 0.210196 | 6_1:+71295468 | None:intergenic |
| GTTCCTAATGTTCTCTCTAT+TGG | 0.211895 | 6_1:-71295514 | Msa0892270:CDS |
| ATTCTGGTTGGTTAGTTTCT+AGG | 0.231792 | 6_1:+71294648 | None:intergenic |
| TCGAAAATTGTTGTTTGATT+TGG | 0.251032 | 6_1:-71294441 | Msa0892270:CDS |
| TTCCTTCTTGTTTGTACCTT+TGG | 0.251316 | 6_1:+71294738 | None:intergenic |
| TTACGTTGGTGCTTGGTTCT+TGG | 0.278732 | 6_1:+71294699 | None:intergenic |
| TCAGTGATGTACTGAAATTC+TGG | 0.322305 | 6_1:+71294632 | None:intergenic |
| TTCCTAATGTTCTCTCTATT+GGG | 0.325463 | 6_1:-71295513 | Msa0892270:CDS |
| ATGTTTATATCTGATGTCTT+TGG | 0.328430 | 6_1:+71295637 | None:intergenic |
| GTGTGCGAAGTGTGAAGTTT+TGG | 0.351331 | 6_1:-71294285 | Msa0892270:CDS |
| AGCCAAATGGTAGCGATAAA+AGG | 0.352290 | 6_1:-71294391 | Msa0892270:CDS |
| AGAGTGTTGAAAAGAGTTGT+AGG | 0.355881 | 6_1:-71294314 | Msa0892270:CDS |
| TGGGACAAAGTCTTCTCATT+TGG | 0.356913 | 6_1:-71295494 | Msa0892270:CDS |
| TTCTGGTTGGTTAGTTTCTA+GGG | 0.378769 | 6_1:+71294649 | None:intergenic |
| AAATTTGTCTTCTATTACGT+TGG | 0.397620 | 6_1:+71294685 | None:intergenic |
| TTTGATTGAAGGAGAGGACT+TGG | 0.400436 | 6_1:-71294249 | Msa0892270:CDS |
| GACATTGATAATTTGATTGA+AGG | 0.407555 | 6_1:-71294260 | Msa0892270:CDS |
| TGAAGAAGAAAGAGAAGGAT+TGG | 0.423291 | 6_1:-71294204 | Msa0892270:CDS |
| GTCCCAATAGAGAGAACATT+AGG | 0.423456 | 6_1:+71295511 | None:intergenic |
| GTAATAGAAGACAAATTTAA+CGG | 0.434091 | 6_1:-71294680 | Msa0892270:CDS |
| TTTATATCTGATGTCTTTGG+AGG | 0.435794 | 6_1:+71295640 | None:intergenic |
| GAGTGTTGAAAAGAGTTGTA+GGG | 0.439820 | 6_1:-71294313 | Msa0892270:CDS |
| TATCATTAGTACTTTGTTCA+AGG | 0.441254 | 6_1:+71294510 | None:intergenic |
| TTGCGACCAATGGACAATTA+CGG | 0.445049 | 6_1:-71294348 | Msa0892270:CDS |
| TAGTACTTTGTTCAAGGTGG+TGG | 0.446332 | 6_1:+71294516 | None:intergenic |
| CACCAAAATTCCTCTCAAAC+AGG | 0.453429 | 6_1:-71295470 | Msa0892270:intron |
| TCTTCTATTACGTTGGTGCT+TGG | 0.460533 | 6_1:+71294692 | None:intergenic |
| TCAAGGTGGTGGAAGATTGA+TGG | 0.479355 | 6_1:+71294527 | None:intergenic |
| TTGGTTAGTTTCTAGGGTTG+TGG | 0.479415 | 6_1:+71294655 | None:intergenic |
| AGAAAGAGAAGGATTGGTGA+TGG | 0.480333 | 6_1:-71294198 | Msa0892270:CDS |
| ATAGAGAGAACATTAGGAAC+TGG | 0.484701 | 6_1:+71295517 | None:intergenic |
| CTTGCTCTAGAATTTGATGT+TGG | 0.496153 | 6_1:+71295610 | None:intergenic |
| GTTGGTGCTTGGTTCTTGGT+TGG | 0.502681 | 6_1:+71294703 | None:intergenic |
| AGTTTAGTTCAAGATTCAAA+AGG | 0.506836 | 6_1:-71295663 | Msa0892270:CDS |
| AAAACCAACTTGGTCATCGT+TGG | 0.524487 | 6_1:-71294466 | Msa0892270:CDS |
| TGATAATTTGATTGAAGGAG+AGG | 0.525016 | 6_1:-71294255 | Msa0892270:CDS |
| TTAGCTCCGTAATTGTCCAT+TGG | 0.531572 | 6_1:+71294342 | None:intergenic |
| GAAGATGAAGAAGAAAGAGA+AGG | 0.544497 | 6_1:-71294209 | Msa0892270:CDS |
| GGATTGGTGATGGAGATTCA+AGG | 0.563109 | 6_1:-71294188 | Msa0892270:CDS |
| TATCTAGTTGTATGTGCCAA+AGG | 0.566420 | 6_1:-71294754 | Msa0892270:CDS |
| GAAATTAGTACCTGTTTGAG+AGG | 0.575253 | 6_1:+71295460 | None:intergenic |
| GATTGGTGATGGAGATTCAA+GGG | 0.583384 | 6_1:-71294187 | Msa0892270:CDS |
| GATTCCAACGATGACCAAGT+TGG | 0.584180 | 6_1:+71294462 | None:intergenic |
| TGCCAAAGGTACAAACAAGA+AGG | 0.589622 | 6_1:-71294740 | Msa0892270:CDS |
| GAACTGGATTGATGTTGTTG+AGG | 0.594213 | 6_1:+71295533 | None:intergenic |
| CATTAGTACTTTGTTCAAGG+TGG | 0.595640 | 6_1:+71294513 | None:intergenic |
| TTGAGGAGATTGCTTGACAA+TGG | 0.599115 | 6_1:+71295550 | None:intergenic |
| CAAGGTGGTGGAAGATTGAT+GGG | 0.600107 | 6_1:+71294528 | None:intergenic |
| AGGGAACATATTAGACACAT+TGG | 0.605305 | 6_1:-71294168 | Msa0892270:CDS |
| AAAACTTCACACTTCGCACA+CGG | 0.609246 | 6_1:+71294287 | None:intergenic |
| TGATGTACTGAAATTCTGGT+TGG | 0.630974 | 6_1:+71294636 | None:intergenic |
| GGAAGATTGATGGGTCAAGT+AGG | 0.639668 | 6_1:+71294537 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATAAAATTAAATTAT+GGG | + | chr6_1:71294434-71294453 | None:intergenic | 0.0% |
| !! | AAATATATAAAATTAAATTA+TGG | + | chr6_1:71294435-71294454 | None:intergenic | 0.0% |
| !! | AATATATAAAATTAAATTAT+GGG | + | chr6_1:71294434-71294453 | None:intergenic | 0.0% |
| !! | AAATATATAAAATTAAATTA+TGG | + | chr6_1:71294435-71294454 | None:intergenic | 0.0% |
| !! | TATGTAAAACAAAATTAAAA+TGG | - | chr6_1:71294764-71294783 | Msa0892270:intron | 10.0% |
| !! | ATGTAAAACAAAATTAAAAT+GGG | - | chr6_1:71294765-71294784 | Msa0892270:intron | 10.0% |
| !!! | GTTAATCTTTTTTTTTTTTT+TGG | - | chr6_1:71294956-71294975 | Msa0892270:intron | 10.0% |
| !!! | TTTGTTTTTAATGTTTTTTT+TGG | + | chr6_1:71295047-71295066 | None:intergenic | 10.0% |
| !! | TATGTAAAACAAAATTAAAA+TGG | - | chr6_1:71294764-71294783 | Msa0892270:intron | 10.0% |
| !! | ATGTAAAACAAAATTAAAAT+GGG | - | chr6_1:71294765-71294784 | Msa0892270:intron | 10.0% |
| !!! | GTTAATCTTTTTTTTTTTTT+TGG | - | chr6_1:71294956-71294975 | Msa0892270:intron | 10.0% |
| !!! | TTTGTTTTTAATGTTTTTTT+TGG | + | chr6_1:71295047-71295066 | None:intergenic | 10.0% |
| !! | ATCATTAATAAATGTTACAA+AGG | + | chr6_1:71294592-71294611 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAATTTACATGA+TGG | + | chr6_1:71294931-71294950 | None:intergenic | 15.0% |
| !!! | AATCTTTTTTTTTTTTTTGG+TGG | - | chr6_1:71294959-71294978 | Msa0892270:intron | 15.0% |
| !!! | ATCTTTTTTTTTTTTTTGGT+GGG | - | chr6_1:71294960-71294979 | Msa0892270:intron | 15.0% |
| !! | ATCATTAATAAATGTTACAA+AGG | + | chr6_1:71294592-71294611 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAATTTACATGA+TGG | + | chr6_1:71294931-71294950 | None:intergenic | 15.0% |
| !!! | AATCTTTTTTTTTTTTTTGG+TGG | - | chr6_1:71294959-71294978 | Msa0892270:intron | 15.0% |
| !!! | ATCTTTTTTTTTTTTTTGGT+GGG | - | chr6_1:71294960-71294979 | Msa0892270:intron | 15.0% |
| !!! | TACTTCTAACCTTTTTTTTT+TGG | - | chr6_1:71294617-71294636 | Msa0892270:CDS | 20.0% |
| !!! | TCTTTTTTTTTTTTTTGGTG+GGG | - | chr6_1:71294961-71294980 | Msa0892270:intron | 20.0% |
| !! | AAACAACATGAAAATACAAA+TGG | + | chr6_1:71295023-71295042 | None:intergenic | 20.0% |
| !! | GTAATAGAAGACAAATTTAA+CGG | - | chr6_1:71295189-71295208 | Msa0892270:intron | 20.0% |
| !!! | AAAATGTGTCTTTTAACAAA+TGG | - | chr6_1:71295295-71295314 | Msa0892270:intron | 20.0% |
| !!! | TACTTCTAACCTTTTTTTTT+TGG | - | chr6_1:71294617-71294636 | Msa0892270:CDS | 20.0% |
| !!! | TCTTTTTTTTTTTTTTGGTG+GGG | - | chr6_1:71294961-71294980 | Msa0892270:intron | 20.0% |
| !! | AAACAACATGAAAATACAAA+TGG | + | chr6_1:71295023-71295042 | None:intergenic | 20.0% |
| !! | GTAATAGAAGACAAATTTAA+CGG | - | chr6_1:71295189-71295208 | Msa0892270:intron | 20.0% |
| !!! | AAAATGTGTCTTTTAACAAA+TGG | - | chr6_1:71295295-71295314 | Msa0892270:intron | 20.0% |
| !! | TCTTGAACTAAACTTTTCAT+TGG | + | chr6_1:71294200-71294219 | None:intergenic | 25.0% |
| !! | AGTTTAGTTCAAGATTCAAA+AGG | - | chr6_1:71294206-71294225 | Msa0892270:CDS | 25.0% |
| ! | ATGTTTATATCTGATGTCTT+TGG | + | chr6_1:71294235-71294254 | None:intergenic | 25.0% |
| !!! | TTCTAACCTTTTTTTTTTGG+TGG | - | chr6_1:71294620-71294639 | Msa0892270:CDS | 25.0% |
| ! | GACAATGCATAAAATATGTA+AGG | + | chr6_1:71294668-71294687 | None:intergenic | 25.0% |
| ! | GCACACTGTTAAAATTAAAA+TGG | + | chr6_1:71294819-71294838 | None:intergenic | 25.0% |
| !!! | GAAAATATTAAGTAGTGGAT+AGG | + | chr6_1:71294861-71294880 | None:intergenic | 25.0% |
| ! | CTACAGAAAATATTAAGTAG+TGG | + | chr6_1:71294866-71294885 | None:intergenic | 25.0% |
| ! | TTAAAAACAAAAACAGTCAC+AGG | - | chr6_1:71295056-71295075 | Msa0892270:intron | 25.0% |
| ! | AAATTTGTCTTCTATTACGT+TGG | + | chr6_1:71295187-71295206 | None:intergenic | 25.0% |
| ! | TATCATTAGTACTTTGTTCA+AGG | + | chr6_1:71295362-71295381 | None:intergenic | 25.0% |
| !!! | TCGAAAATTGTTGTTTGATT+TGG | - | chr6_1:71295428-71295447 | Msa0892270:intron | 25.0% |
| !!! | CGATAAAAGGTTATGTTTTT+TGG | - | chr6_1:71295491-71295510 | Msa0892270:CDS | 25.0% |
| !!! | AAAAGGTTATGTTTTTTGGA+TGG | - | chr6_1:71295495-71295514 | Msa0892270:CDS | 25.0% |
| !!! | AAAGGTTATGTTTTTTGGAT+GGG | - | chr6_1:71295496-71295515 | Msa0892270:CDS | 25.0% |
| !! | GACATTGATAATTTGATTGA+AGG | - | chr6_1:71295609-71295628 | Msa0892270:CDS | 25.0% |
| !! | TCTTGAACTAAACTTTTCAT+TGG | + | chr6_1:71294200-71294219 | None:intergenic | 25.0% |
| !! | AGTTTAGTTCAAGATTCAAA+AGG | - | chr6_1:71294206-71294225 | Msa0892270:CDS | 25.0% |
| ! | ATGTTTATATCTGATGTCTT+TGG | + | chr6_1:71294235-71294254 | None:intergenic | 25.0% |
| !!! | TTCTAACCTTTTTTTTTTGG+TGG | - | chr6_1:71294620-71294639 | Msa0892270:CDS | 25.0% |
| ! | GACAATGCATAAAATATGTA+AGG | + | chr6_1:71294668-71294687 | None:intergenic | 25.0% |
| ! | GCACACTGTTAAAATTAAAA+TGG | + | chr6_1:71294819-71294838 | None:intergenic | 25.0% |
| !!! | GAAAATATTAAGTAGTGGAT+AGG | + | chr6_1:71294861-71294880 | None:intergenic | 25.0% |
| ! | CTACAGAAAATATTAAGTAG+TGG | + | chr6_1:71294866-71294885 | None:intergenic | 25.0% |
| ! | TTAAAAACAAAAACAGTCAC+AGG | - | chr6_1:71295056-71295075 | Msa0892270:intron | 25.0% |
| ! | AAATTTGTCTTCTATTACGT+TGG | + | chr6_1:71295187-71295206 | None:intergenic | 25.0% |
| ! | TATCATTAGTACTTTGTTCA+AGG | + | chr6_1:71295362-71295381 | None:intergenic | 25.0% |
| !!! | TCGAAAATTGTTGTTTGATT+TGG | - | chr6_1:71295428-71295447 | Msa0892270:intron | 25.0% |
| !!! | CGATAAAAGGTTATGTTTTT+TGG | - | chr6_1:71295491-71295510 | Msa0892270:CDS | 25.0% |
| !!! | AAAAGGTTATGTTTTTTGGA+TGG | - | chr6_1:71295495-71295514 | Msa0892270:CDS | 25.0% |
| !!! | AAAGGTTATGTTTTTTGGAT+GGG | - | chr6_1:71295496-71295515 | Msa0892270:CDS | 25.0% |
| !! | GACATTGATAATTTGATTGA+AGG | - | chr6_1:71295609-71295628 | Msa0892270:CDS | 25.0% |
| TTTATATCTGATGTCTTTGG+AGG | + | chr6_1:71294232-71294251 | None:intergenic | 30.0% | |
| TTCCTAATGTTCTCTCTATT+GGG | - | chr6_1:71294356-71294375 | Msa0892270:CDS | 30.0% | |
| TAATACCCTCATCTTCATAT+GGG | - | chr6_1:71294500-71294519 | Msa0892270:CDS | 30.0% | |
| !!! | TAACCTTTTTTTTTTGGTGG+TGG | - | chr6_1:71294623-71294642 | Msa0892270:CDS | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | + | chr6_1:71294663-71294682 | None:intergenic | 30.0% | |
| !! | AGGCTTTGATTTTGTTATGT+AGG | + | chr6_1:71294841-71294860 | None:intergenic | 30.0% |
| ACAAATGGTTAGAAAAAGCA+AGG | + | chr6_1:71295008-71295027 | None:intergenic | 30.0% | |
| TTTACGAGAAAAAACCAACT+TGG | - | chr6_1:71295393-71295412 | Msa0892270:intron | 30.0% | |
| !!! | ATTGAGATTTTGAAGCCAAA+TGG | - | chr6_1:71295465-71295484 | Msa0892270:intron | 30.0% |
| TGATAATTTGATTGAAGGAG+AGG | - | chr6_1:71295614-71295633 | Msa0892270:CDS | 30.0% | |
| ! | ATTGGTGCATGAAACTATTT+TGG | - | chr6_1:71295719-71295738 | Msa0892270:CDS | 30.0% |
| TTTATATCTGATGTCTTTGG+AGG | + | chr6_1:71294232-71294251 | None:intergenic | 30.0% | |
| TTCCTAATGTTCTCTCTATT+GGG | - | chr6_1:71294356-71294375 | Msa0892270:CDS | 30.0% | |
| TAATACCCTCATCTTCATAT+GGG | - | chr6_1:71294500-71294519 | Msa0892270:CDS | 30.0% | |
| !!! | TAACCTTTTTTTTTTGGTGG+TGG | - | chr6_1:71294623-71294642 | Msa0892270:CDS | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | + | chr6_1:71294663-71294682 | None:intergenic | 30.0% | |
| !! | AGGCTTTGATTTTGTTATGT+AGG | + | chr6_1:71294841-71294860 | None:intergenic | 30.0% |
| ACAAATGGTTAGAAAAAGCA+AGG | + | chr6_1:71295008-71295027 | None:intergenic | 30.0% | |
| TTTACGAGAAAAAACCAACT+TGG | - | chr6_1:71295393-71295412 | Msa0892270:intron | 30.0% | |
| !!! | ATTGAGATTTTGAAGCCAAA+TGG | - | chr6_1:71295465-71295484 | Msa0892270:intron | 30.0% |
| TGATAATTTGATTGAAGGAG+AGG | - | chr6_1:71295614-71295633 | Msa0892270:CDS | 30.0% | |
| ! | ATTGGTGCATGAAACTATTT+TGG | - | chr6_1:71295719-71295738 | Msa0892270:CDS | 30.0% |
| !! | CTTGCTCTAGAATTTGATGT+TGG | + | chr6_1:71294262-71294281 | None:intergenic | 35.0% |
| ATAGAGAGAACATTAGGAAC+TGG | + | chr6_1:71294355-71294374 | None:intergenic | 35.0% | |
| GTTCCTAATGTTCTCTCTAT+TGG | - | chr6_1:71294355-71294374 | Msa0892270:CDS | 35.0% | |
| ! | TACCTGTTTGAGAGGAATTT+TGG | + | chr6_1:71294404-71294423 | None:intergenic | 35.0% |
| GAAATTAGTACCTGTTTGAG+AGG | + | chr6_1:71294412-71294431 | None:intergenic | 35.0% | |
| CTAATACCCTCATCTTCATA+TGG | - | chr6_1:71294499-71294518 | Msa0892270:CDS | 35.0% | |
| CAAATCCCATATGAAGATGA+GGG | + | chr6_1:71294508-71294527 | None:intergenic | 35.0% | |
| ACAAATCCCATATGAAGATG+AGG | + | chr6_1:71294509-71294528 | None:intergenic | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | + | chr6_1:71294661-71294680 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | + | chr6_1:71294662-71294681 | None:intergenic | 35.0% | |
| GTTTGTACTTGTACATGCAA+TGG | + | chr6_1:71294897-71294916 | None:intergenic | 35.0% | |
| TATCTAGTTGTATGTGCCAA+AGG | - | chr6_1:71295115-71295134 | Msa0892270:intron | 35.0% | |
| ! | TTCCTTCTTGTTTGTACCTT+TGG | + | chr6_1:71295134-71295153 | None:intergenic | 35.0% |
| !! | TTCTGGTTGGTTAGTTTCTA+GGG | + | chr6_1:71295223-71295242 | None:intergenic | 35.0% |
| !! | ATTCTGGTTGGTTAGTTTCT+AGG | + | chr6_1:71295224-71295243 | None:intergenic | 35.0% |
| TGATGTACTGAAATTCTGGT+TGG | + | chr6_1:71295236-71295255 | None:intergenic | 35.0% | |
| TCAGTGATGTACTGAAATTC+TGG | + | chr6_1:71295240-71295259 | None:intergenic | 35.0% | |
| CATTAGTACTTTGTTCAAGG+TGG | + | chr6_1:71295359-71295378 | None:intergenic | 35.0% | |
| ! | AACCTTTTATCGCTACCATT+TGG | + | chr6_1:71295483-71295502 | None:intergenic | 35.0% |
| !! | AGAGTGTTGAAAAGAGTTGT+AGG | - | chr6_1:71295555-71295574 | Msa0892270:CDS | 35.0% |
| !! | GAGTGTTGAAAAGAGTTGTA+GGG | - | chr6_1:71295556-71295575 | Msa0892270:CDS | 35.0% |
| GAAGATGAAGAAGAAAGAGA+AGG | - | chr6_1:71295660-71295679 | Msa0892270:CDS | 35.0% | |
| TGAAGAAGAAAGAGAAGGAT+TGG | - | chr6_1:71295665-71295684 | Msa0892270:CDS | 35.0% | |
| AGGGAACATATTAGACACAT+TGG | - | chr6_1:71295701-71295720 | Msa0892270:CDS | 35.0% | |
| !! | CTTGCTCTAGAATTTGATGT+TGG | + | chr6_1:71294262-71294281 | None:intergenic | 35.0% |
| ATAGAGAGAACATTAGGAAC+TGG | + | chr6_1:71294355-71294374 | None:intergenic | 35.0% | |
| GTTCCTAATGTTCTCTCTAT+TGG | - | chr6_1:71294355-71294374 | Msa0892270:CDS | 35.0% | |
| ! | TACCTGTTTGAGAGGAATTT+TGG | + | chr6_1:71294404-71294423 | None:intergenic | 35.0% |
| GAAATTAGTACCTGTTTGAG+AGG | + | chr6_1:71294412-71294431 | None:intergenic | 35.0% | |
| CTAATACCCTCATCTTCATA+TGG | - | chr6_1:71294499-71294518 | Msa0892270:CDS | 35.0% | |
| CAAATCCCATATGAAGATGA+GGG | + | chr6_1:71294508-71294527 | None:intergenic | 35.0% | |
| ACAAATCCCATATGAAGATG+AGG | + | chr6_1:71294509-71294528 | None:intergenic | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | + | chr6_1:71294661-71294680 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | + | chr6_1:71294662-71294681 | None:intergenic | 35.0% | |
| GTTTGTACTTGTACATGCAA+TGG | + | chr6_1:71294897-71294916 | None:intergenic | 35.0% | |
| TATCTAGTTGTATGTGCCAA+AGG | - | chr6_1:71295115-71295134 | Msa0892270:intron | 35.0% | |
| ! | TTCCTTCTTGTTTGTACCTT+TGG | + | chr6_1:71295134-71295153 | None:intergenic | 35.0% |
| !! | TTCTGGTTGGTTAGTTTCTA+GGG | + | chr6_1:71295223-71295242 | None:intergenic | 35.0% |
| !! | ATTCTGGTTGGTTAGTTTCT+AGG | + | chr6_1:71295224-71295243 | None:intergenic | 35.0% |
| TGATGTACTGAAATTCTGGT+TGG | + | chr6_1:71295236-71295255 | None:intergenic | 35.0% | |
| TCAGTGATGTACTGAAATTC+TGG | + | chr6_1:71295240-71295259 | None:intergenic | 35.0% | |
| CATTAGTACTTTGTTCAAGG+TGG | + | chr6_1:71295359-71295378 | None:intergenic | 35.0% | |
| ! | AACCTTTTATCGCTACCATT+TGG | + | chr6_1:71295483-71295502 | None:intergenic | 35.0% |
| !! | AGAGTGTTGAAAAGAGTTGT+AGG | - | chr6_1:71295555-71295574 | Msa0892270:CDS | 35.0% |
| !! | GAGTGTTGAAAAGAGTTGTA+GGG | - | chr6_1:71295556-71295575 | Msa0892270:CDS | 35.0% |
| GAAGATGAAGAAGAAAGAGA+AGG | - | chr6_1:71295660-71295679 | Msa0892270:CDS | 35.0% | |
| TGAAGAAGAAAGAGAAGGAT+TGG | - | chr6_1:71295665-71295684 | Msa0892270:CDS | 35.0% | |
| AGGGAACATATTAGACACAT+TGG | - | chr6_1:71295701-71295720 | Msa0892270:CDS | 35.0% | |
| TTGAGGAGATTGCTTGACAA+TGG | + | chr6_1:71294322-71294341 | None:intergenic | 40.0% | |
| GAACTGGATTGATGTTGTTG+AGG | + | chr6_1:71294339-71294358 | None:intergenic | 40.0% | |
| GTCCCAATAGAGAGAACATT+AGG | + | chr6_1:71294361-71294380 | None:intergenic | 40.0% | |
| TGGGACAAAGTCTTCTCATT+TGG | - | chr6_1:71294375-71294394 | Msa0892270:CDS | 40.0% | |
| ! | CTGTTTGAGAGGAATTTTGG+TGG | + | chr6_1:71294401-71294420 | None:intergenic | 40.0% |
| CACCAAAATTCCTCTCAAAC+AGG | - | chr6_1:71294399-71294418 | Msa0892270:CDS | 40.0% | |
| !!! | CTTTTTTTTTTGGTGGTGGC+CGG | - | chr6_1:71294627-71294646 | Msa0892270:CDS | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | - | chr6_1:71294628-71294647 | Msa0892270:CDS | 40.0% |
| AGATAACTGTGAGCAGAGTT+TGG | + | chr6_1:71295100-71295119 | None:intergenic | 40.0% | |
| ! | TGCCAAAGGTACAAACAAGA+AGG | - | chr6_1:71295129-71295148 | Msa0892270:intron | 40.0% |
| ! | TCTTCTATTACGTTGGTGCT+TGG | + | chr6_1:71295180-71295199 | None:intergenic | 40.0% |
| !! | TTGGTTAGTTTCTAGGGTTG+TGG | + | chr6_1:71295217-71295236 | None:intergenic | 40.0% |
| TAGTACTTTGTTCAAGGTGG+TGG | + | chr6_1:71295356-71295375 | None:intergenic | 40.0% | |
| AAAACCAACTTGGTCATCGT+TGG | - | chr6_1:71295403-71295422 | Msa0892270:intron | 40.0% | |
| ! | AGCCAAATGGTAGCGATAAA+AGG | - | chr6_1:71295478-71295497 | Msa0892270:CDS | 40.0% |
| TTGCGACCAATGGACAATTA+CGG | - | chr6_1:71295521-71295540 | Msa0892270:CDS | 40.0% | |
| TTAGCTCCGTAATTGTCCAT+TGG | + | chr6_1:71295530-71295549 | None:intergenic | 40.0% | |
| AAAACTTCACACTTCGCACA+CGG | + | chr6_1:71295585-71295604 | None:intergenic | 40.0% | |
| TTTGATTGAAGGAGAGGACT+TGG | - | chr6_1:71295620-71295639 | Msa0892270:CDS | 40.0% | |
| ! | AGAAAGAGAAGGATTGGTGA+TGG | - | chr6_1:71295671-71295690 | Msa0892270:CDS | 40.0% |
| !! | GATTGGTGATGGAGATTCAA+GGG | - | chr6_1:71295682-71295701 | Msa0892270:CDS | 40.0% |
| TTGAGGAGATTGCTTGACAA+TGG | + | chr6_1:71294322-71294341 | None:intergenic | 40.0% | |
| GAACTGGATTGATGTTGTTG+AGG | + | chr6_1:71294339-71294358 | None:intergenic | 40.0% | |
| GTCCCAATAGAGAGAACATT+AGG | + | chr6_1:71294361-71294380 | None:intergenic | 40.0% | |
| TGGGACAAAGTCTTCTCATT+TGG | - | chr6_1:71294375-71294394 | Msa0892270:CDS | 40.0% | |
| ! | CTGTTTGAGAGGAATTTTGG+TGG | + | chr6_1:71294401-71294420 | None:intergenic | 40.0% |
| CACCAAAATTCCTCTCAAAC+AGG | - | chr6_1:71294399-71294418 | Msa0892270:CDS | 40.0% | |
| !!! | CTTTTTTTTTTGGTGGTGGC+CGG | - | chr6_1:71294627-71294646 | Msa0892270:CDS | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | - | chr6_1:71294628-71294647 | Msa0892270:CDS | 40.0% |
| AGATAACTGTGAGCAGAGTT+TGG | + | chr6_1:71295100-71295119 | None:intergenic | 40.0% | |
| ! | TGCCAAAGGTACAAACAAGA+AGG | - | chr6_1:71295129-71295148 | Msa0892270:intron | 40.0% |
| ! | TCTTCTATTACGTTGGTGCT+TGG | + | chr6_1:71295180-71295199 | None:intergenic | 40.0% |
| !! | TTGGTTAGTTTCTAGGGTTG+TGG | + | chr6_1:71295217-71295236 | None:intergenic | 40.0% |
| TAGTACTTTGTTCAAGGTGG+TGG | + | chr6_1:71295356-71295375 | None:intergenic | 40.0% | |
| AAAACCAACTTGGTCATCGT+TGG | - | chr6_1:71295403-71295422 | Msa0892270:intron | 40.0% | |
| ! | AGCCAAATGGTAGCGATAAA+AGG | - | chr6_1:71295478-71295497 | Msa0892270:CDS | 40.0% |
| TTGCGACCAATGGACAATTA+CGG | - | chr6_1:71295521-71295540 | Msa0892270:CDS | 40.0% | |
| TTAGCTCCGTAATTGTCCAT+TGG | + | chr6_1:71295530-71295549 | None:intergenic | 40.0% | |
| AAAACTTCACACTTCGCACA+CGG | + | chr6_1:71295585-71295604 | None:intergenic | 40.0% | |
| TTTGATTGAAGGAGAGGACT+TGG | - | chr6_1:71295620-71295639 | Msa0892270:CDS | 40.0% | |
| ! | AGAAAGAGAAGGATTGGTGA+TGG | - | chr6_1:71295671-71295690 | Msa0892270:CDS | 40.0% |
| !! | GATTGGTGATGGAGATTCAA+GGG | - | chr6_1:71295682-71295701 | Msa0892270:CDS | 40.0% |
| CGGCCACCACCAAAAAAAAA+AGG | + | chr6_1:71294629-71294648 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | - | chr6_1:71294629-71294648 | Msa0892270:CDS | 45.0% |
| ! | TGAGCTTCGTTCAGTTGGTA+TGG | + | chr6_1:71294690-71294709 | None:intergenic | 45.0% |
| ! | TTACGTTGGTGCTTGGTTCT+TGG | + | chr6_1:71295173-71295192 | None:intergenic | 45.0% |
| ! | GGAAGATTGATGGGTCAAGT+AGG | + | chr6_1:71295335-71295354 | None:intergenic | 45.0% |
| !! | CAAGGTGGTGGAAGATTGAT+GGG | + | chr6_1:71295344-71295363 | None:intergenic | 45.0% |
| !! | TCAAGGTGGTGGAAGATTGA+TGG | + | chr6_1:71295345-71295364 | None:intergenic | 45.0% |
| GATTCCAACGATGACCAAGT+TGG | + | chr6_1:71295410-71295429 | None:intergenic | 45.0% | |
| ! | GTGTGCGAAGTGTGAAGTTT+TGG | - | chr6_1:71295584-71295603 | Msa0892270:CDS | 45.0% |
| !! | GGATTGGTGATGGAGATTCA+AGG | - | chr6_1:71295681-71295700 | Msa0892270:CDS | 45.0% |
| CGGCCACCACCAAAAAAAAA+AGG | + | chr6_1:71294629-71294648 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | - | chr6_1:71294629-71294648 | Msa0892270:CDS | 45.0% |
| ! | TGAGCTTCGTTCAGTTGGTA+TGG | + | chr6_1:71294690-71294709 | None:intergenic | 45.0% |
| ! | TTACGTTGGTGCTTGGTTCT+TGG | + | chr6_1:71295173-71295192 | None:intergenic | 45.0% |
| ! | GGAAGATTGATGGGTCAAGT+AGG | + | chr6_1:71295335-71295354 | None:intergenic | 45.0% |
| !! | CAAGGTGGTGGAAGATTGAT+GGG | + | chr6_1:71295344-71295363 | None:intergenic | 45.0% |
| !! | TCAAGGTGGTGGAAGATTGA+TGG | + | chr6_1:71295345-71295364 | None:intergenic | 45.0% |
| GATTCCAACGATGACCAAGT+TGG | + | chr6_1:71295410-71295429 | None:intergenic | 45.0% | |
| ! | GTGTGCGAAGTGTGAAGTTT+TGG | - | chr6_1:71295584-71295603 | Msa0892270:CDS | 45.0% |
| !! | GGATTGGTGATGGAGATTCA+AGG | - | chr6_1:71295681-71295700 | Msa0892270:CDS | 45.0% |
| ! | GTTGGTGCTTGGTTCTTGGT+TGG | + | chr6_1:71295169-71295188 | None:intergenic | 50.0% |
| !! | TGGATGGGTTTTGCGACCAA+TGG | - | chr6_1:71295511-71295530 | Msa0892270:CDS | 50.0% |
| ! | GTTGGTGCTTGGTTCTTGGT+TGG | + | chr6_1:71295169-71295188 | None:intergenic | 50.0% |
| !! | TGGATGGGTTTTGCGACCAA+TGG | - | chr6_1:71295511-71295530 | Msa0892270:CDS | 50.0% |
| CCTCGTGAGCTTCGTTCAGT+TGG | + | chr6_1:71294695-71294714 | None:intergenic | 55.0% | |
| CCAACTGAACGAAGCTCACG+AGG | - | chr6_1:71294692-71294711 | Msa0892270:CDS | 55.0% | |
| CCTCGTGAGCTTCGTTCAGT+TGG | + | chr6_1:71294695-71294714 | None:intergenic | 55.0% | |
| CCAACTGAACGAAGCTCACG+AGG | - | chr6_1:71294692-71294711 | Msa0892270:CDS | 55.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr6_1:71294649-71294668 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr6_1:71294649-71294668 | None:intergenic | 60.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr6_1:71294641-71294660 | Msa0892270:CDS | 70.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr6_1:71294641-71294660 | Msa0892270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 71294133 | 71295758 | 71294133 | ID=Msa0892270;Name=Msa0892270 |
| chr6_1 | mRNA | 71294133 | 71295758 | 71294133 | ID=Msa0892270-mRNA-1;Parent=Msa0892270;Name=Msa0892270-mRNA-1;_AED=0.10;_eAED=0.72;_QI=0|0|0|1|1|1|2|0|310 |
| chr6_1 | exon | 71294133 | 71294777 | 71294133 | ID=Msa0892270-mRNA-1:exon:12317;Parent=Msa0892270-mRNA-1 |
| chr6_1 | exon | 71295471 | 71295758 | 71295471 | ID=Msa0892270-mRNA-1:exon:12316;Parent=Msa0892270-mRNA-1 |
| chr6_1 | CDS | 71295471 | 71295758 | 71295471 | ID=Msa0892270-mRNA-1:cds;Parent=Msa0892270-mRNA-1 |
| chr6_1 | CDS | 71294133 | 71294777 | 71294133 | ID=Msa0892270-mRNA-1:cds;Parent=Msa0892270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
