AlfalfaGEDB | Msa0157290

M. sativa cultivar zhongmu-4 / Msa0157290

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157290	I3T478	97.425	233	4	1	1	231	1	233	5.87e-152	431

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0157290	0.859507	3.943753e-63	-8.615850e-47
Msa0000550	Msa0157290	-0.857348	1.734993e-62	-8.615850e-47
Msa0001590	Msa0157290	0.819101	1.385955e-52	-8.615850e-47
Msa0001780	Msa0157290	0.854880	9.169039e-62	-8.615850e-47
Msa0001790	Msa0157290	0.809293	2.032374e-50	-8.615850e-47
Msa0002490	Msa0157290	0.822692	2.067218e-53	-8.615850e-47
Msa0002930	Msa0157290	0.839408	1.613133e-57	-8.615850e-47
Msa0003700	Msa0157290	0.871365	7.224041e-67	-8.615850e-47
Msa0003890	Msa0157290	0.863185	2.981041e-64	-8.615850e-47
Msa0004640	Msa0157290	0.820742	5.840755e-53	-8.615850e-47

Showing 1 to 10 of 2,919 entries

Previous1 2 3 4 5…292Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157290	MtrunA17_Chr1g0168941	97.425	233	4	1	1	231	1	233	1.13e-155	431

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157290	AT4G13540.1	46.061	165	71	4	49	212	37	184	1.13e-32	118
Msa0157290	AT3G23930.1	41.279	172	78	4	52	212	40	199	1.15e-23	95.1

Showing 1 to 2 of 2 entries

Previous1Next

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGATAATAATTAAG+AGG	0.425100	1_4:+24295792	None:intergenic
AAAAGCTCAATTAGGTTCAG+TGG	0.518823	1_4:-24294565	Msa0157290:CDS
AAACTACAACACTTGTCACA+AGG	0.585905	1_4:-24295750	Msa0157290:five_prime_UTR
AAAGAGGATAATAATTAAGA+GGG	0.562833	1_4:+24295793	None:intergenic
AAAGCTTTAAAAGCTCAATT+AGG	0.297525	1_4:-24294573	Msa0157290:CDS
AAAGGAGATAATGTGTGATA+GGG	0.526845	1_4:-24295613	Msa0157290:CDS
AAAGGGAATTTGACTTGTTA+AGG	0.331176	1_4:-24294521	Msa0157290:CDS
AAATCTAAAATTGGTTGAAT+AGG	0.347060	1_4:-24294373	Msa0157290:three_prime_UTR
AACTACAACACTTGTCACAA+GGG	0.607391	1_4:-24295749	Msa0157290:five_prime_UTR
AAGAAAGGTACAAACAAGAA+AGG	0.469395	1_4:-24294539	Msa0157290:CDS

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTATAGTGAGAGATGAAAAG+AGG	+	chr1_4:24294168-24294187	None:intergenic	30.0%
TAAAGGAGATAATGTGTGAT+AGG	-	chr1_4:24294328-24294347	Msa0157290:three_prime_UTR	30.0%
AAAGGAGATAATGTGTGATA+GGG	-	chr1_4:24294329-24294348	Msa0157290:three_prime_UTR	30.0%
TCTTGCAATTAAGAATGAGT+TGG	-	chr1_4:24294629-24294648	Msa0157290:CDS	30.0%
ACTTACCATCATATGTTCTT+TGG	+	chr1_4:24294665-24294684	None:intergenic	30.0%
GAAAAGGACACAAAATATGA+AGG	-	chr1_4:24295714-24295733	Msa0157290:CDS	30.0%
TTATAGTGAGAGATGAAAAG+AGG	+	chr1_4:24294168-24294187	None:intergenic	30.0%
TAAAGGAGATAATGTGTGAT+AGG	-	chr1_4:24294328-24294347	Msa0157290:three_prime_UTR	30.0%
AAAGGAGATAATGTGTGATA+GGG	-	chr1_4:24294329-24294348	Msa0157290:three_prime_UTR	30.0%
TCTTGCAATTAAGAATGAGT+TGG	-	chr1_4:24294629-24294648	Msa0157290:CDS	30.0%

Showing 1 to 10 of 197 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	24294115	24295849	24294115	ID=Msa0157290;Name=Msa0157290
chr1_4	mRNA	24294115	24295849	24294115	ID=Msa0157290-mRNA-1;Parent=Msa0157290;Name=Msa0157290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113\|1\|1\|1\|1\|1\|2\|322\|231
chr1_4	exon	24294115	24294681	24294115	ID=Msa0157290-mRNA-1:exon:8432;Parent=Msa0157290-mRNA-1
chr1_4	exon	24295286	24295849	24295286	ID=Msa0157290-mRNA-1:exon:8431;Parent=Msa0157290-mRNA-1
chr1_4	five_prime_UTR	24295737	24295849	24295737	ID=Msa0157290-mRNA-1:five_prime_utr;Parent=Msa0157290-mRNA-1
chr1_4	CDS	24295286	24295736	24295286	ID=Msa0157290-mRNA-1:cds;Parent=Msa0157290-mRNA-1
chr1_4	CDS	24294437	24294681	24294437	ID=Msa0157290-mRNA-1:cds;Parent=Msa0157290-mRNA-1
chr1_4	three_prime_UTR	24294115	24294436	24294115	ID=Msa0157290-mRNA-1:three_prime_utr;Parent=Msa0157290-mRNA-1

Gene Sequence

>Msa0157290

ATGGGGGGAAGTGTTAGTGTTAGCAAGAAAAATGAGATAAAGTATCCACAAAAATATGTAATGAATTTGAAAGAGAAAGTGAGACTTCTACAAGAAGAAATAAAGGAGATAATGTGTGATAGGGAGAAAGAGAGTAGGAACTATGAGAGGGAGATAATGGTGTTTGCTTTCAAGGAGGCAGATTGGAAACAAGAGATGAAGAGGTTGAAAGAAGAGGTGAAGCAGTTGAGGGAAGTGGTGGAAGAGAAGGAAGAGAAGATAAGGGAGATGGAAGAGGTTGGAATGGTTGAGAAGAATTGTGAGAAAGAGTGGGAATTAATGGGGACTAAGCTTTTGGTTCAAGAGATGAAGGAGGAAAGAGCAAGGAGAGATGAAGCTGTTGAGAAGTGGAAACAACTTTATCTTGCAATTAAGAATGAGTTGGATGATCTCATCCAAAGAACATATGATGGAGATGGTTTGTATTGGAAAGCTGAGGAAAATGACATACAAATTGAAAATCTGAAGAGGGAATTGCAAGAGAAAGAAGAAAGCATAAAAGCTTTAAAAGCTCAATTAGGTTCAGTGGAGAAAGAAAGGTACAAACAAGAAAGGGAATTTGACTTGTTAAGGCAAAGCTTGAGGATCATGAATGGCAAGAAGAATCCAATTCAAACTAAAGAGAAGAAGAAGTTGAAAATCAAATTGGGAAAATAA

Protein sequence

>Msa0157290

MGGSVSVSKKNEIKYPQKYVMNLKEKVRLLQEEIKEIMCDREKESRNYEREIMVFAFKEADWKQEMKRLKEEVKQLREVVEEKEEKIREMEEVGMVEKNCEKEWELMGTKLLVQEMKEERARRDEAVEKWKQLYLAIKNELDDLIQRTYDGDGLYWKAEENDIQIENLKRELQEKEESIKALKAQLGSVEKERYKQEREFDLLRQSLRIMNGKKNPIQTKEKKKLKIKLGK*