AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0157290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157290 MtrunA17_Chr1g0168941 97.425 233 4 1 1 231 1 233 1.13e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157290 AT4G13540.1 46.061 165 71 4 49 212 37 184 1.13e-32 118
Msa0157290 AT3G23930.1 41.279 172 78 4 52 212 40 199 1.15e-23 95.1

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATCTAAAATCTAAAAT+TGG 0.233307 1_4:-24294382 Msa0157290:three_prime_UTR
TGAGAAAGAGTGGGAATTAA+TGG 0.247721 1_4:-24295415 Msa0157290:CDS
ACTTACCATCATATGTTCTT+TGG 0.249382 1_4:+24295280 None:intergenic
GAAGAAGTTGAAAATCAAAT+TGG 0.250274 1_4:-24294445 Msa0157290:CDS
TTCTTCTCTTTAGTTTGAAT+TGG 0.254934 1_4:+24294465 None:intergenic
AAAGCTTTAAAAGCTCAATT+AGG 0.297525 1_4:-24294573 Msa0157290:CDS
GATAATGGTGTTTGCTTTCA+AGG 0.301137 1_4:-24295562 Msa0157290:CDS
ATTAATGGGGACTAAGCTTT+TGG 0.315398 1_4:-24295400 Msa0157290:CDS
AAAGGGAATTTGACTTGTTA+AGG 0.331176 1_4:-24294521 Msa0157290:CDS
AAATCTAAAATTGGTTGAAT+AGG 0.347060 1_4:-24294373 Msa0157290:three_prime_UTR
TAAAGGAGATAATGTGTGAT+AGG 0.355573 1_4:-24295614 Msa0157290:CDS
ATAATTAAGAGGGTTAAATA+TGG 0.372889 1_4:+24295803 None:intergenic
ACTTCTACAAGAAGAAATAA+AGG 0.374088 1_4:-24295631 Msa0157290:CDS
TACTGAATATGCCATGTCTA+AGG 0.379067 1_4:-24294164 Msa0157290:three_prime_UTR
GAACTATGAGAGGGAGATAA+TGG 0.387809 1_4:-24295577 Msa0157290:CDS
GAGAAAGAGTGGGAATTAAT+GGG 0.405188 1_4:-24295414 Msa0157290:CDS
AAAAGAGGATAATAATTAAG+AGG 0.425100 1_4:+24295792 None:intergenic
GAGGGAAGTGGTGGAAGAGA+AGG 0.429388 1_4:-24295487 Msa0157290:CDS
AAGAGAAGGAAGAGAAGATA+AGG 0.430927 1_4:-24295473 Msa0157290:CDS
AAGAAGTTGAAAATCAAATT+GGG 0.435875 1_4:-24294444 Msa0157290:CDS
GGTGAAGCAGTTGAGGGAAG+TGG 0.438865 1_4:-24295499 Msa0157290:CDS
AAGAAGAGGTGAAGCAGTTG+AGG 0.440787 1_4:-24295506 Msa0157290:CDS
TCACAGGAGATGGTTTGTAT+TGG 0.451338 1_4:-24294665 Msa0157290:intron
AAGTCCTTTGGATCTTGAAA+AGG 0.454440 1_4:-24294244 Msa0157290:three_prime_UTR
AGAAGAATTGTGAGAAAGAG+TGG 0.454742 1_4:-24295425 Msa0157290:CDS
ATAAGGGAGATGGAAGAGGT+TGG 0.460472 1_4:-24295456 Msa0157290:CDS
TTGCTTTCAAGGAGGCAGAT+TGG 0.464224 1_4:-24295551 Msa0157290:CDS
AAGAAAGGTACAAACAAGAA+AGG 0.469395 1_4:-24294539 Msa0157290:CDS
TTAAATATGGAGTTATGTAC+AGG 0.475012 1_4:+24295816 None:intergenic
TTATTATATAGATTTAAATA+CGG 0.476164 1_4:-24294115 Msa0157290:three_prime_UTR
AGAGAAGGAAGAGAAGATAA+GGG 0.476340 1_4:-24295472 Msa0157290:CDS
AGAAGAGGTGAAGCAGTTGA+GGG 0.480459 1_4:-24295505 Msa0157290:CDS
AAGAGAGTAGGAACTATGAG+AGG 0.487797 1_4:-24295587 Msa0157290:CDS
GAAGATAAGGGAGATGGAAG+AGG 0.488344 1_4:-24295460 Msa0157290:CDS
TATGGAGTTATGTACAGGTT+AGG 0.492116 1_4:+24295821 None:intergenic
TACAAATTGAAAATCTGAAG+AGG 0.492525 1_4:-24294623 Msa0157290:CDS
CTACAAGGAATTAAAATAAG+TGG 0.492578 1_4:+24294315 None:intergenic
GTGATAGGGAGAAAGAGAGT+AGG 0.501313 1_4:-24295599 Msa0157290:CDS
GGAAGAGAAGATAAGGGAGA+TGG 0.503969 1_4:-24295466 Msa0157290:CDS
TCTTGCAATTAAGAATGAGT+TGG 0.505081 1_4:-24295313 Msa0157290:CDS
GAGATGAAGCTGTTGAGAAG+TGG 0.508742 1_4:-24295347 Msa0157290:CDS
TAGGTTCAGTGGAGAAAGAA+AGG 0.512086 1_4:-24294554 Msa0157290:CDS
GAAGCAGTTGAGGGAAGTGG+TGG 0.513840 1_4:-24295496 Msa0157290:CDS
AAAAGCTCAATTAGGTTCAG+TGG 0.518823 1_4:-24294565 Msa0157290:CDS
AGAGAGTAGGAACTATGAGA+GGG 0.522297 1_4:-24295586 Msa0157290:CDS
CTCATCCAAAGAACATATGA+TGG 0.522947 1_4:-24295285 Msa0157290:intron
ACAAGGGGCCAATTCAAAGA+TGG 0.524101 1_4:-24295733 Msa0157290:exon
AAAGGAGATAATGTGTGATA+GGG 0.526845 1_4:-24295613 Msa0157290:CDS
GATGAAGAGGTTGAAAGAAG+AGG 0.528949 1_4:-24295520 Msa0157290:CDS
AGAAAGGTACAAACAAGAAA+GGG 0.530283 1_4:-24294538 Msa0157290:CDS
TTATAGTGAGAGATGAAAAG+AGG 0.531477 1_4:+24295777 None:intergenic
GAAAAGGACACAAAATATGA+AGG 0.534850 1_4:-24294228 Msa0157290:three_prime_UTR
CAAGGGGCCAATTCAAAGAT+GGG 0.538294 1_4:-24295732 Msa0157290:exon
GGAGATGGAAGAGGTTGGAA+TGG 0.546010 1_4:-24295451 Msa0157290:CDS
ACTTGTTAAGGCAAAGCTTG+AGG 0.554263 1_4:-24294509 Msa0157290:CDS
GGAAAATAAAATGCAAACAT+TGG 0.554585 1_4:-24294423 Msa0157290:exon
AAAGAGGATAATAATTAAGA+GGG 0.562833 1_4:+24295793 None:intergenic
ATTGGAAACAAGAGATGAAG+AGG 0.564436 1_4:-24295533 Msa0157290:CDS
CAAAGCTTGAGGATCATGAA+TGG 0.565818 1_4:-24294498 Msa0157290:CDS
CATTCACTACTCCTTAGACA+TGG 0.567542 1_4:+24294153 None:intergenic
AAACTACAACACTTGTCACA+AGG 0.585905 1_4:-24295750 Msa0157290:five_prime_UTR
ACAAATTGAAAATCTGAAGA+GGG 0.598118 1_4:-24294622 Msa0157290:CDS
GAAGAATTGTGAGAAAGAGT+GGG 0.599083 1_4:-24295424 Msa0157290:CDS
AACTACAACACTTGTCACAA+GGG 0.607391 1_4:-24295749 Msa0157290:five_prime_UTR
AAGGGGCCAATTCAAAGATG+GGG 0.610731 1_4:-24295731 Msa0157290:exon
AGAAAGAGTGGGAATTAATG+GGG 0.618319 1_4:-24295413 Msa0157290:CDS
AGATGAAGGAGGAAAGAGCA+AGG 0.618929 1_4:-24295371 Msa0157290:CDS
TGGTTTGTATTGGAAAGCTG+AGG 0.636251 1_4:-24294655 Msa0157290:CDS
ACTACATAAGCCAGTCCACA+AGG 0.639940 1_4:+24294187 None:intergenic
TTTGGTTCAAGAGATGAAGG+AGG 0.645416 1_4:-24295382 Msa0157290:CDS
AGGGGCCAATTCAAAGATGG+GGG 0.664758 1_4:-24295730 Msa0157290:exon
ACTACAACACTTGTCACAAG+GGG 0.671010 1_4:-24295748 Msa0157290:five_prime_UTR
AATGGTGTTTGCTTTCAAGG+AGG 0.717432 1_4:-24295559 Msa0157290:CDS
GGGGCCAATTCAAAGATGGG+GGG 0.731569 1_4:-24295729 Msa0157290:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCATTACATATTTTTG+TGG + chr1_4:24294276-24294295 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr1_4:24294923-24294942 None:intergenic 15.0%
!!! AAATTCATTACATATTTTTG+TGG + chr1_4:24294276-24294295 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr1_4:24294923-24294942 None:intergenic 15.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr1_4:24294142-24294161 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr1_4:24294152-24294171 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr1_4:24294153-24294172 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr1_4:24295034-24295053 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr1_4:24295132-24295151 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr1_4:24295133-24295152 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr1_4:24295158-24295177 Msa0157290:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr1_4:24295498-24295517 Msa0157290:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr1_4:24295560-24295579 Msa0157290:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr1_4:24295569-24295588 Msa0157290:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr1_4:24295659-24295678 Msa0157290:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr1_4:24295665-24295684 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr1_4:24295686-24295705 Msa0157290:CDS 20.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr1_4:24294142-24294161 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr1_4:24294152-24294171 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr1_4:24294153-24294172 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr1_4:24295034-24295053 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr1_4:24295132-24295151 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr1_4:24295133-24295152 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr1_4:24295158-24295177 Msa0157290:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr1_4:24295498-24295517 Msa0157290:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr1_4:24295560-24295579 Msa0157290:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr1_4:24295569-24295588 Msa0157290:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr1_4:24295659-24295678 Msa0157290:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr1_4:24295665-24295684 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr1_4:24295686-24295705 Msa0157290:CDS 20.0%
! TTAAATATGGAGTTATGTAC+AGG + chr1_4:24294129-24294148 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr1_4:24294311-24294330 Msa0157290:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr1_4:24295319-24295338 Msa0157290:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr1_4:24295320-24295339 Msa0157290:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr1_4:24295369-24295388 Msa0157290:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr1_4:24295480-24295499 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr1_4:24295497-24295516 Msa0157290:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr1_4:24295519-24295538 Msa0157290:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr1_4:24295630-24295649 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr1_4:24295645-24295664 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr1_4:24295740-24295759 Msa0157290:five_prime_UTR 25.0%
! TTAAATATGGAGTTATGTAC+AGG + chr1_4:24294129-24294148 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr1_4:24294311-24294330 Msa0157290:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr1_4:24295319-24295338 Msa0157290:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr1_4:24295320-24295339 Msa0157290:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr1_4:24295369-24295388 Msa0157290:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr1_4:24295480-24295499 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr1_4:24295497-24295516 Msa0157290:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr1_4:24295519-24295538 Msa0157290:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr1_4:24295630-24295649 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr1_4:24295645-24295664 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr1_4:24295740-24295759 Msa0157290:five_prime_UTR 25.0%
TTATAGTGAGAGATGAAAAG+AGG + chr1_4:24294168-24294187 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr1_4:24294328-24294347 Msa0157290:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr1_4:24294329-24294348 Msa0157290:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr1_4:24294629-24294648 Msa0157290:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr1_4:24294665-24294684 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr1_4:24295246-24295265 Msa0157290:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr1_4:24295403-24295422 Msa0157290:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr1_4:24295404-24295423 Msa0157290:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr1_4:24295421-24295440 Msa0157290:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr1_4:24295714-24295733 Msa0157290:CDS 30.0%
TTATAGTGAGAGATGAAAAG+AGG + chr1_4:24294168-24294187 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr1_4:24294328-24294347 Msa0157290:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr1_4:24294329-24294348 Msa0157290:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr1_4:24294629-24294648 Msa0157290:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr1_4:24294665-24294684 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr1_4:24295246-24295265 Msa0157290:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr1_4:24295403-24295422 Msa0157290:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr1_4:24295404-24295423 Msa0157290:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr1_4:24295421-24295440 Msa0157290:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr1_4:24295714-24295733 Msa0157290:CDS 30.0%
TATGGAGTTATGTACAGGTT+AGG + chr1_4:24294124-24294143 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr1_4:24294192-24294211 Msa0157290:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr1_4:24294193-24294212 Msa0157290:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr1_4:24294380-24294399 Msa0157290:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr1_4:24294409-24294428 Msa0157290:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr1_4:24294469-24294488 Msa0157290:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr1_4:24294470-24294489 Msa0157290:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr1_4:24294517-24294536 Msa0157290:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr1_4:24294518-24294537 Msa0157290:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr1_4:24294527-24294546 Msa0157290:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr1_4:24294528-24294547 Msa0157290:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr1_4:24294529-24294548 Msa0157290:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr1_4:24294542-24294561 Msa0157290:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr1_4:24294657-24294676 Msa0157290:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr1_4:24295261-24295280 Msa0157290:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr1_4:24295377-24295396 Msa0157290:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr1_4:24295698-24295717 Msa0157290:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr1_4:24295745-24295764 Msa0157290:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr1_4:24295778-24295797 Msa0157290:five_prime_UTR 35.0%
TATGGAGTTATGTACAGGTT+AGG + chr1_4:24294124-24294143 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr1_4:24294192-24294211 Msa0157290:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr1_4:24294193-24294212 Msa0157290:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr1_4:24294380-24294399 Msa0157290:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr1_4:24294409-24294428 Msa0157290:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr1_4:24294469-24294488 Msa0157290:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr1_4:24294470-24294489 Msa0157290:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr1_4:24294517-24294536 Msa0157290:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr1_4:24294518-24294537 Msa0157290:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr1_4:24294527-24294546 Msa0157290:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr1_4:24294528-24294547 Msa0157290:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr1_4:24294529-24294548 Msa0157290:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr1_4:24294542-24294561 Msa0157290:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr1_4:24294657-24294676 Msa0157290:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr1_4:24295261-24295280 Msa0157290:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr1_4:24295377-24295396 Msa0157290:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr1_4:24295698-24295717 Msa0157290:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr1_4:24295745-24295764 Msa0157290:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr1_4:24295778-24295797 Msa0157290:five_prime_UTR 35.0%
ACTACAACACTTGTCACAAG+GGG - chr1_4:24294194-24294213 Msa0157290:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr1_4:24294355-24294374 Msa0157290:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr1_4:24294356-24294375 Msa0157290:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr1_4:24294365-24294384 Msa0157290:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr1_4:24294383-24294402 Msa0157290:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr1_4:24294422-24294441 Msa0157290:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr1_4:24294557-24294576 Msa0157290:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr1_4:24294560-24294579 Msa0157290:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr1_4:24295095-24295114 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr1_4:24295096-24295115 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr1_4:24295099-24295118 Msa0157290:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr1_4:24295267-24295286 Msa0157290:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr1_4:24295277-24295296 Msa0157290:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr1_4:24295287-24295306 Msa0157290:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr1_4:24295388-24295407 Msa0157290:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr1_4:24295433-24295452 Msa0157290:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr1_4:24295444-24295463 Msa0157290:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr1_4:24295705-24295724 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr1_4:24295792-24295811 None:intergenic 40.0%
ACTACAACACTTGTCACAAG+GGG - chr1_4:24294194-24294213 Msa0157290:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr1_4:24294355-24294374 Msa0157290:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr1_4:24294356-24294375 Msa0157290:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr1_4:24294365-24294384 Msa0157290:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr1_4:24294383-24294402 Msa0157290:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr1_4:24294422-24294441 Msa0157290:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr1_4:24294557-24294576 Msa0157290:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr1_4:24294560-24294579 Msa0157290:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr1_4:24295095-24295114 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr1_4:24295096-24295115 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr1_4:24295099-24295118 Msa0157290:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr1_4:24295267-24295286 Msa0157290:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr1_4:24295277-24295296 Msa0157290:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr1_4:24295287-24295306 Msa0157290:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr1_4:24295388-24295407 Msa0157290:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr1_4:24295433-24295452 Msa0157290:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr1_4:24295444-24295463 Msa0157290:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr1_4:24295705-24295724 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr1_4:24295792-24295811 None:intergenic 40.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr1_4:24294209-24294228 Msa0157290:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr1_4:24294210-24294229 Msa0157290:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr1_4:24294211-24294230 Msa0157290:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr1_4:24294220-24294239 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr1_4:24294343-24294362 Msa0157290:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr1_4:24294391-24294410 Msa0157290:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr1_4:24294436-24294455 Msa0157290:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr1_4:24294437-24294456 Msa0157290:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr1_4:24294476-24294495 Msa0157290:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr1_4:24294482-24294501 Msa0157290:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr1_4:24294486-24294505 Msa0157290:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr1_4:24294571-24294590 Msa0157290:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr1_4:24294595-24294614 Msa0157290:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr1_4:24295091-24295110 Msa0157290:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr1_4:24295098-24295117 Msa0157290:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr1_4:24295100-24295119 Msa0157290:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr1_4:24295758-24295777 None:intergenic 45.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr1_4:24294209-24294228 Msa0157290:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr1_4:24294210-24294229 Msa0157290:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr1_4:24294211-24294230 Msa0157290:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr1_4:24294220-24294239 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr1_4:24294343-24294362 Msa0157290:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr1_4:24294391-24294410 Msa0157290:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr1_4:24294436-24294455 Msa0157290:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr1_4:24294437-24294456 Msa0157290:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr1_4:24294476-24294495 Msa0157290:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr1_4:24294482-24294501 Msa0157290:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr1_4:24294486-24294505 Msa0157290:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr1_4:24294571-24294590 Msa0157290:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr1_4:24294595-24294614 Msa0157290:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr1_4:24295091-24295110 Msa0157290:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr1_4:24295098-24295117 Msa0157290:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr1_4:24295100-24295119 Msa0157290:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr1_4:24295758-24295777 None:intergenic 45.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr1_4:24294949-24294968 None:intergenic 5.0%
!! TTATTATATAGATTTAAATA+CGG - chr1_4:24295827-24295846 Msa0157290:five_prime_UTR 5.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr1_4:24294949-24294968 None:intergenic 5.0%
AGGGGCCAATTCAAAGATGG+GGG - chr1_4:24294212-24294231 Msa0157290:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr1_4:24294491-24294510 Msa0157290:CDS 50.0%
AGGGGCCAATTCAAAGATGG+GGG - chr1_4:24294212-24294231 Msa0157290:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr1_4:24294491-24294510 Msa0157290:CDS 50.0%
GGGGCCAATTCAAAGATGGG+GGG - chr1_4:24294213-24294232 Msa0157290:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr1_4:24294443-24294462 Msa0157290:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr1_4:24294446-24294465 Msa0157290:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr1_4:24294455-24294474 Msa0157290:CDS 55.0%
GGGGCCAATTCAAAGATGGG+GGG - chr1_4:24294213-24294232 Msa0157290:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr1_4:24294443-24294462 Msa0157290:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr1_4:24294446-24294465 Msa0157290:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr1_4:24294455-24294474 Msa0157290:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 24294115 24295849 24294115 ID=Msa0157290;Name=Msa0157290
chr1_4 mRNA 24294115 24295849 24294115 ID=Msa0157290-mRNA-1;Parent=Msa0157290;Name=Msa0157290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|322|231
chr1_4 exon 24294115 24294681 24294115 ID=Msa0157290-mRNA-1:exon:8432;Parent=Msa0157290-mRNA-1
chr1_4 exon 24295286 24295849 24295286 ID=Msa0157290-mRNA-1:exon:8431;Parent=Msa0157290-mRNA-1
chr1_4 five_prime_UTR 24295737 24295849 24295737 ID=Msa0157290-mRNA-1:five_prime_utr;Parent=Msa0157290-mRNA-1
chr1_4 CDS 24295286 24295736 24295286 ID=Msa0157290-mRNA-1:cds;Parent=Msa0157290-mRNA-1
chr1_4 CDS 24294437 24294681 24294437 ID=Msa0157290-mRNA-1:cds;Parent=Msa0157290-mRNA-1
chr1_4 three_prime_UTR 24294115 24294436 24294115 ID=Msa0157290-mRNA-1:three_prime_utr;Parent=Msa0157290-mRNA-1
Gene Sequence

>Msa0157290

ATGGGGGGAAGTGTTAGTGTTAGCAAGAAAAATGAGATAAAGTATCCACAAAAATATGTAATGAATTTGAAAGAGAAAGTGAGACTTCTACAAGAAGAAATAAAGGAGATAATGTGTGATAGGGAGAAAGAGAGTAGGAACTATGAGAGGGAGATAATGGTGTTTGCTTTCAAGGAGGCAGATTGGAAACAAGAGATGAAGAGGTTGAAAGAAGAGGTGAAGCAGTTGAGGGAAGTGGTGGAAGAGAAGGAAGAGAAGATAAGGGAGATGGAAGAGGTTGGAATGGTTGAGAAGAATTGTGAGAAAGAGTGGGAATTAATGGGGACTAAGCTTTTGGTTCAAGAGATGAAGGAGGAAAGAGCAAGGAGAGATGAAGCTGTTGAGAAGTGGAAACAACTTTATCTTGCAATTAAGAATGAGTTGGATGATCTCATCCAAAGAACATATGATGGAGATGGTTTGTATTGGAAAGCTGAGGAAAATGACATACAAATTGAAAATCTGAAGAGGGAATTGCAAGAGAAAGAAGAAAGCATAAAAGCTTTAAAAGCTCAATTAGGTTCAGTGGAGAAAGAAAGGTACAAACAAGAAAGGGAATTTGACTTGTTAAGGCAAAGCTTGAGGATCATGAATGGCAAGAAGAATCCAATTCAAACTAAAGAGAAGAAGAAGTTGAAAATCAAATTGGGAAAATAA

Protein sequence

>Msa0157290

MGGSVSVSKKNEIKYPQKYVMNLKEKVRLLQEEIKEIMCDREKESRNYEREIMVFAFKEADWKQEMKRLKEEVKQLREVVEEKEEKIREMEEVGMVEKNCEKEWELMGTKLLVQEMKEERARRDEAVEKWKQLYLAIKNELDDLIQRTYDGDGLYWKAEENDIQIENLKRELQEKEESIKALKAQLGSVEKERYKQEREFDLLRQSLRIMNGKKNPIQTKEKKKLKIKLGK*